Query psy6417
Match_columns 194
No_of_seqs 201 out of 291
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 17:29:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxk_C Protein (prefoldin); ar 99.7 4.8E-17 1.6E-21 124.9 6.8 67 18-84 58-124 (133)
2 2zdi_C Prefoldin subunit alpha 99.7 2.1E-17 7.2E-22 130.3 4.9 72 18-89 68-139 (151)
3 3i1m_R 30S ribosomal protein S 99.3 8.5E-13 2.9E-17 96.5 2.2 39 153-192 2-41 (75)
4 2vqe_R 30S ribosomal protein S 99.2 1.1E-11 3.7E-16 92.9 2.8 43 148-192 9-52 (88)
5 3bbn_R Ribosomal protein S18; 98.9 5.2E-10 1.8E-14 86.3 2.0 33 158-192 16-48 (103)
6 3r8n_R 30S ribosomal protein S 98.3 3.1E-07 1.1E-11 63.5 2.2 22 170-192 1-22 (55)
7 2zqm_A Prefoldin beta subunit 95.5 0.048 1.6E-06 39.9 7.2 57 27-84 50-106 (117)
8 1fxk_A Prefoldin; archaeal pro 95.1 0.081 2.8E-06 38.2 7.2 56 27-83 45-100 (107)
9 2elu_A Zinc finger protein 406 37.7 11 0.00039 23.9 1.0 24 157-184 7-30 (37)
10 1iym_A EL5; ring-H2 finger, ub 34.4 17 0.00056 22.2 1.4 14 157-170 41-54 (55)
11 1p7a_A BF3, BKLF, kruppel-like 32.4 30 0.001 18.5 2.2 24 161-188 13-36 (37)
12 3gpv_A Transcriptional regulat 30.8 56 0.0019 24.8 4.2 36 46-81 93-128 (148)
13 2kvf_A Zinc finger and BTB dom 30.7 35 0.0012 16.8 2.1 24 161-188 5-28 (28)
14 1pft_A TFIIB, PFTFIIBN; N-term 30.1 12 0.00039 23.8 0.1 30 159-192 5-35 (50)
15 2m0d_A Zinc finger and BTB dom 28.9 28 0.00097 17.1 1.6 24 161-188 5-28 (30)
16 2csy_A Zinc finger protein 183 28.2 26 0.0009 23.2 1.7 27 159-185 49-76 (81)
17 2elm_A Zinc finger protein 406 27.6 18 0.0006 19.8 0.6 25 161-189 11-36 (37)
18 3gp4_A Transcriptional regulat 24.2 64 0.0022 24.5 3.4 36 45-80 78-113 (142)
19 1gd2_E Transcription factor PA 23.2 1.1E+02 0.0038 21.4 4.2 32 50-81 31-62 (70)
20 2elv_A Zinc finger protein 406 22.8 56 0.0019 17.2 2.2 24 161-188 11-34 (36)
21 1znf_A 31ST zinc finger from X 21.4 74 0.0025 15.3 2.3 24 161-188 3-26 (27)
22 3mjh_B Early endosome antigen 21.0 34 0.0012 21.2 1.0 17 161-181 7-23 (34)
23 1srk_A Zinc finger protein ZFP 20.5 53 0.0018 17.1 1.7 25 161-189 9-33 (35)
24 3fx7_A Putative uncharacterize 20.4 1.1E+02 0.0039 22.8 4.0 33 50-82 51-83 (94)
25 1bor_A Transcription factor PM 20.4 26 0.00087 22.1 0.4 17 159-175 37-53 (56)
No 1
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=99.68 E-value=4.8e-17 Score=124.94 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=64.0
Q ss_pred ccceeeeecCCCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccceeEEe
Q psy6417 18 EAAKKNSSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTEVN 84 (194)
Q Consensus 18 d~lyakA~I~p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTtEVN 84 (194)
+++|.+|.|+++++|++|||+|+|+||+++||+++|+++++.++.+++.++++++|+++||++++--
T Consensus 58 ~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~ 124 (133)
T 1fxk_C 58 AGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQ 124 (133)
T ss_dssp TTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999987643
No 2
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=99.68 E-value=2.1e-17 Score=130.28 Aligned_cols=72 Identities=11% Similarity=0.177 Sum_probs=69.4
Q ss_pred ccceeeeecCCCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccceeEEeeeeee
Q psy6417 18 EAAKKNSSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTEVNMARVY 89 (194)
Q Consensus 18 d~lyakA~I~p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTtEVN~ARvY 89 (194)
+++|.+|.|+++++|++|||||+|+||+++||+++|+++++.++.+++.++++++++++||+++++++..++
T Consensus 68 ~~~yv~g~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 68 AGSFLKGVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp SSCEEEEECSCTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CCeEEEEEECCCCEEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999999987765
No 3
>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 4gaq_R* 4gas_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R ...
Probab=99.28 E-value=8.5e-13 Score=96.51 Aligned_cols=39 Identities=18% Similarity=0.516 Sum_probs=20.5
Q ss_pred CCcccCCceeeecCCCC-CCCCCCHHHHHhhccCCccceee
Q psy6417 153 NPFQKEKVVCILCKMKI-KPDYKNIKLLSQFVSAFTGRVCI 192 (194)
Q Consensus 153 ~Py~k~~k~C~lC~~~i-~iDYKNV~LLsqFiS~~tG~I~~ 192 (194)
.||++++|.|+||..++ .||||||+||+||||+ +|+|+.
T Consensus 2 ~~~~~r~k~C~fc~~~~~~iDYknv~lL~~Fis~-~GkIlp 41 (75)
T 3i1m_R 2 ARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITE-SGKIVP 41 (75)
T ss_dssp ------------------CCSTTCHHHHGGGBCT-TCCBCC
T ss_pred CccCCCCCCCCcccCCCCcCCcCCHHHHHHHcCc-CCCCcC
Confidence 47889999999999987 5999999999999999 899974
No 4
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R 1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R* 1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U* 1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Probab=99.15 E-value=1.1e-11 Score=92.94 Aligned_cols=43 Identities=21% Similarity=0.341 Sum_probs=32.2
Q ss_pred ccccCCCcccCCceeeecCCCC-CCCCCCHHHHHhhccCCccceee
Q psy6417 148 AEDLKNPFQKEKVVCILCKMKI-KPDYKNIKLLSQFVSAFTGRVCI 192 (194)
Q Consensus 148 ~~~~~~Py~k~~k~C~lC~~~i-~iDYKNV~LLsqFiS~~tG~I~~ 192 (194)
...|.+++ ++++.|+||..++ .||||||+||+||||+ +|+|+.
T Consensus 9 ~~~~~~~~-~r~k~C~~c~~~~~~iDYKnv~lL~~Fise-~GkIlp 52 (88)
T 2vqe_R 9 KKEAQRRP-SRKAKVKATLGEFDLRDYRNVEVLKRFLSE-TGKILP 52 (88)
T ss_dssp -------C-CCSCCTTTSCCCEETTCTTCHHHHGGGBCS-SSCBCC
T ss_pred cccccccC-CCCCCCCccCCCCCcCCcCCHHHHHHHccc-CCCCCc
Confidence 44555665 5669999999886 5999999999999999 899974
No 5
>3bbn_R Ribosomal protein S18; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=98.87 E-value=5.2e-10 Score=86.34 Aligned_cols=33 Identities=24% Similarity=0.445 Sum_probs=21.6
Q ss_pred CCceeeecCCCCCCCCCCHHHHHhhccCCccceee
Q psy6417 158 EKVVCILCKMKIKPDYKNIKLLSQFVSAFTGRVCI 192 (194)
Q Consensus 158 ~~k~C~lC~~~i~iDYKNV~LLsqFiS~~tG~I~~ 192 (194)
+++.||+|.. ..||||||+||+||||+ +|+|+.
T Consensus 16 rr~~cpi~~~-~~IDYKnv~lL~~FIse-~GKIlp 48 (103)
T 3bbn_R 16 RRRLPPIQSG-DRIDYRNMSLISRFISE-QGKILS 48 (103)
T ss_dssp ---------C-CSSCCSCHHHHTTTSCS-SSSCCC
T ss_pred cCCCCCcCCC-CcCCcCCHHHHHHHhcc-CCCCcC
Confidence 4579999984 56999999999999999 899974
No 6
>3r8n_R 30S ribosomal protein S18; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_R 3fih_R* 3iy8_R 3j18_R* 2wwl_R 3oar_R 3oaq_R 3ofb_R 3ofa_R 3ofp_R 3ofx_R 3ofy_R 3ofo_R 3r8o_R 4a2i_R 4gd1_R 4gd2_R
Probab=98.26 E-value=3.1e-07 Score=63.54 Aligned_cols=22 Identities=27% Similarity=0.676 Sum_probs=20.3
Q ss_pred CCCCCCHHHHHhhccCCccceee
Q psy6417 170 KPDYKNIKLLSQFVSAFTGRVCI 192 (194)
Q Consensus 170 ~iDYKNV~LLsqFiS~~tG~I~~ 192 (194)
+||||||+||+||||+ +|+|+.
T Consensus 1 ~iDYknv~lL~~Fis~-~GkIlp 22 (55)
T 3r8n_R 1 EIDYKDIATLKNYITE-SGKIVP 22 (55)
T ss_dssp CCCTTCHHHHGGGBCT-TCCBCC
T ss_pred CCCccCHHHHHHHcCC-CCCCcC
Confidence 4899999999999999 899974
No 7
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=95.51 E-value=0.048 Score=39.87 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=50.5
Q ss_pred CCCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccceeEEe
Q psy6417 27 PPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTEVN 84 (194)
Q Consensus 27 ~p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTtEVN 84 (194)
++..+||.=+| .|.++-+.+||...|+++++..+..++.++..++.+++++.-.+.+
T Consensus 50 ~~d~~vy~~iG-~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 50 PDDAVVYKTVG-TLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp CTTCCEEEEET-TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHhHHHhh-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557888888 8999999999999999999999999999999999999998755443
No 8
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=95.09 E-value=0.081 Score=38.16 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=49.1
Q ss_pred CCCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccceeEE
Q psy6417 27 PPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTEV 83 (194)
Q Consensus 27 ~p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTtEV 83 (194)
|+..+||-=+| .|.++-+.+||..-|+++++..+..++.++..++.+++++.-.+.
T Consensus 45 ~~d~~vy~~iG-~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 45 ADDAEVYKSSG-NILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp CTTCCEEEEET-TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHh-HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55557887777 899999999999999999999999999999999999998765443
No 9
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=37.71 E-value=11 Score=23.93 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=17.6
Q ss_pred cCCceeeecCCCCCCCCCCHHHHHhhcc
Q psy6417 157 KEKVVCILCKMKIKPDYKNIKLLSQFVS 184 (194)
Q Consensus 157 k~~k~C~lC~~~i~iDYKNV~LLsqFiS 184 (194)
+-++-|.||.++ |.+|+-|-+-|-
T Consensus 7 kikqhcrfckkk----ysdvknlikhir 30 (37)
T 2elu_A 7 GIKQHCRFCKKK----YSDVKNLIKHIR 30 (37)
T ss_dssp CCCCEETTTTEE----CSSHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 446789999974 778877766554
No 10
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=34.44 E-value=17 Score=22.22 Aligned_cols=14 Identities=21% Similarity=0.717 Sum_probs=10.2
Q ss_pred cCCceeeecCCCCC
Q psy6417 157 KEKVVCILCKMKIK 170 (194)
Q Consensus 157 k~~k~C~lC~~~i~ 170 (194)
+....||+|+..+.
T Consensus 41 ~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 41 GSHSTCPLCRLTVV 54 (55)
T ss_dssp TTCCSCSSSCCCSC
T ss_pred HcCCcCcCCCCEeE
Confidence 34568999998754
No 11
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=32.42 E-value=30 Score=18.46 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=17.7
Q ss_pred eeeecCCCCCCCCCCHHHHHhhccCCcc
Q psy6417 161 VCILCKMKIKPDYKNIKLLSQFVSAFTG 188 (194)
Q Consensus 161 ~C~lC~~~i~iDYKNV~LLsqFiS~~tG 188 (194)
.|+.|+. .|.....|.+-+.-|+|
T Consensus 13 ~C~~C~k----~f~~~~~l~~H~~~H~~ 36 (37)
T 1p7a_A 13 QCPDCDR----SFSRSDHLALHRKRHML 36 (37)
T ss_dssp CCTTTCC----CBSSHHHHHHHHGGGTC
T ss_pred cCCCCCc----ccCcHHHHHHHHHHhcc
Confidence 7999997 46677777776666665
No 12
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=30.79 E-value=56 Score=24.84 Aligned_cols=36 Identities=8% Similarity=0.151 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccee
Q psy6417 46 LTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTT 81 (194)
Q Consensus 46 ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTt 81 (194)
.++..++|..+++...+.++.+++-++.|.+.|...
T Consensus 93 ~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 93 ILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554433
No 13
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.65 E-value=35 Score=16.84 Aligned_cols=24 Identities=17% Similarity=0.445 Sum_probs=15.3
Q ss_pred eeeecCCCCCCCCCCHHHHHhhccCCcc
Q psy6417 161 VCILCKMKIKPDYKNIKLLSQFVSAFTG 188 (194)
Q Consensus 161 ~C~lC~~~i~iDYKNV~LLsqFiS~~tG 188 (194)
.|..|+.. |....-|.+-+.-|+|
T Consensus 5 ~C~~C~k~----f~~~~~l~~H~~~h~~ 28 (28)
T 2kvf_A 5 SCSVCGKR----FSLKHQMETHYRVHTG 28 (28)
T ss_dssp ECSSSCCE----ESCHHHHHHHHTTSCC
T ss_pred cCCCCCcc----cCCHHHHHHHHHhcCC
Confidence 79999873 5555666655555554
No 14
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=30.14 E-value=12 Score=23.81 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=20.7
Q ss_pred CceeeecCC-CCCCCCCCHHHHHhhccCCccceee
Q psy6417 159 KVVCILCKM-KIKPDYKNIKLLSQFVSAFTGRVCI 192 (194)
Q Consensus 159 ~k~C~lC~~-~i~iDYKNV~LLsqFiS~~tG~I~~ 192 (194)
..+||-|+. .+..|+.. ..++++.-|.+|.
T Consensus 5 ~~~CP~C~~~~l~~d~~~----gelvC~~CG~v~~ 35 (50)
T 1pft_A 5 QKVCPACESAELIYDPER----GEIVCAKCGYVIE 35 (50)
T ss_dssp CCSCTTTSCCCEEEETTT----TEEEESSSCCBCC
T ss_pred cEeCcCCCCcceEEcCCC----CeEECcccCCccc
Confidence 347999986 66667654 3467887887764
No 15
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.92 E-value=28 Score=17.10 Aligned_cols=24 Identities=8% Similarity=0.239 Sum_probs=17.4
Q ss_pred eeeecCCCCCCCCCCHHHHHhhccCCcc
Q psy6417 161 VCILCKMKIKPDYKNIKLLSQFVSAFTG 188 (194)
Q Consensus 161 ~C~lC~~~i~iDYKNV~LLsqFiS~~tG 188 (194)
.|..|+.. |....-|..-+.-|+|
T Consensus 5 ~C~~C~~~----f~~~~~l~~H~~~h~~ 28 (30)
T 2m0d_A 5 QCDYCGRS----FSDPTSKMRHLETHDT 28 (30)
T ss_dssp ECTTTCCE----ESCHHHHHHHHHTTCC
T ss_pred cCCCCCcc----cCCHHHHHHHHHHhcc
Confidence 79999973 6677777776666666
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.22 E-value=26 Score=23.23 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=18.9
Q ss_pred CceeeecCCCCC-CCCCCHHHHHhhccC
Q psy6417 159 KVVCILCKMKIK-PDYKNIKLLSQFVSA 185 (194)
Q Consensus 159 ~k~C~lC~~~i~-iDYKNV~LLsqFiS~ 185 (194)
...||+|+..+. +-..|.+|+.+|...
T Consensus 49 ~~~CP~Cr~~~~~~~~~~~~l~~~~~~~ 76 (81)
T 2csy_A 49 TPRCYICDQPTGGIFNPAKELMAKLQKS 76 (81)
T ss_dssp CSBCSSSCCBCCSCCEECHHHHHHHSSS
T ss_pred CCcCCCcCccccccCCcHHHHHHHHHhh
Confidence 468999998763 334577888777643
No 17
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.60 E-value=18 Score=19.85 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=17.5
Q ss_pred eeeecCCCCCCCCCCHHHHHhh-ccCCccc
Q psy6417 161 VCILCKMKIKPDYKNIKLLSQF-VSAFTGR 189 (194)
Q Consensus 161 ~C~lC~~~i~iDYKNV~LLsqF-iS~~tG~ 189 (194)
+|..|+.. |..-..|.+- +.-|+|.
T Consensus 11 ~C~~C~k~----f~~~~~L~~H~~~~H~~~ 36 (37)
T 2elm_A 11 YCSQCHYS----SITKNCLKRHVIQKHSNI 36 (37)
T ss_dssp ECSSSSCE----EECHHHHHHHHHHHTCCC
T ss_pred ECCCCCcc----cCCHHHHHHHHHHHccCc
Confidence 79999973 5666677766 5556664
No 18
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=24.22 E-value=64 Score=24.47 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=20.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccce
Q psy6417 45 NLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTT 80 (194)
Q Consensus 45 ~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITT 80 (194)
+.++..++|.++++.....++.+++-++.|...|..
T Consensus 78 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~ 113 (142)
T 3gp4_A 78 TLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDN 113 (142)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666666555543
No 19
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.25 E-value=1.1e+02 Score=21.41 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccee
Q psy6417 50 TALVQKNIEAAKKNLSYIEHDLDFLRDQFTTT 81 (194)
Q Consensus 50 ~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTt 81 (194)
++-|+.++...+.....+..+.++||+||..+
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888889999999998754
No 20
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.79 E-value=56 Score=17.21 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=17.8
Q ss_pred eeeecCCCCCCCCCCHHHHHhhccCCcc
Q psy6417 161 VCILCKMKIKPDYKNIKLLSQFVSAFTG 188 (194)
Q Consensus 161 ~C~lC~~~i~iDYKNV~LLsqFiS~~tG 188 (194)
.|..|+. -|.....|.+=+.-|+|
T Consensus 11 ~C~~C~k----~f~~~~~l~~H~~~H~~ 34 (36)
T 2elv_A 11 DCHICER----KFKNELDRDRHMLVHGD 34 (36)
T ss_dssp ECSSSCC----EESSHHHHHHHHTTTST
T ss_pred ECCCCCC----ccCCHHHHHHHHHHhcC
Confidence 7999997 36677777776666666
No 21
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=21.42 E-value=74 Score=15.27 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=16.5
Q ss_pred eeeecCCCCCCCCCCHHHHHhhccCCcc
Q psy6417 161 VCILCKMKIKPDYKNIKLLSQFVSAFTG 188 (194)
Q Consensus 161 ~C~lC~~~i~iDYKNV~LLsqFiS~~tG 188 (194)
.|..|+. .|....-|.+=+.-|+|
T Consensus 3 ~C~~C~k----~f~~~~~l~~H~~~h~~ 26 (27)
T 1znf_A 3 KCGLCER----SFVEKSALSRHQRVHKN 26 (27)
T ss_dssp BCSSSCC----BCSSHHHHHHHGGGTCC
T ss_pred cCCCCCC----cCCCHHHHHHHHHHcCC
Confidence 6899986 36666667666655665
No 22
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=20.98 E-value=34 Score=21.17 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=12.6
Q ss_pred eeeecCCCCCCCCCCHHHHHh
Q psy6417 161 VCILCKMKIKPDYKNIKLLSQ 181 (194)
Q Consensus 161 ~C~lC~~~i~iDYKNV~LLsq 181 (194)
.||+|.. |..|...|.+
T Consensus 7 iCP~C~~----~l~s~~~L~~ 23 (34)
T 3mjh_B 7 ICPQCMK----SLGSADELFK 23 (34)
T ss_dssp ECTTTCC----EESSHHHHHH
T ss_pred CCcHHHH----HcCCHHHHHH
Confidence 7999985 6777766654
No 23
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=20.53 E-value=53 Score=17.13 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=17.6
Q ss_pred eeeecCCCCCCCCCCHHHHHhhccCCccc
Q psy6417 161 VCILCKMKIKPDYKNIKLLSQFVSAFTGR 189 (194)
Q Consensus 161 ~C~lC~~~i~iDYKNV~LLsqFiS~~tG~ 189 (194)
.|..|+. -|.....|.+-+.-|+|.
T Consensus 9 ~C~~C~k----~f~~~~~l~~H~~~H~~~ 33 (35)
T 1srk_A 9 VCRICLS----AFTTKANCARHLKVHTDT 33 (35)
T ss_dssp ECSSSCC----EESSHHHHHHHHGGGTSC
T ss_pred eCCCCCc----ccCCHHHHHHHHHHcCCC
Confidence 7999987 366677777766656653
No 24
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=20.42 E-value=1.1e+02 Score=22.79 Aligned_cols=33 Identities=6% Similarity=0.158 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhccceeE
Q psy6417 50 TALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTE 82 (194)
Q Consensus 50 ~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTtE 82 (194)
.+.+++-++..+.-.+.+.+...||+++|-..|
T Consensus 51 ee~fe~l~s~l~~f~e~a~e~vp~L~~~i~vle 83 (94)
T 3fx7_A 51 SEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHhH
Confidence 345666667777777888999999999986543
No 25
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.40 E-value=26 Score=22.13 Aligned_cols=17 Identities=12% Similarity=0.327 Sum_probs=12.1
Q ss_pred CceeeecCCCCCCCCCC
Q psy6417 159 KVVCILCKMKIKPDYKN 175 (194)
Q Consensus 159 ~k~C~lC~~~i~iDYKN 175 (194)
...||+|+..+.++-..
T Consensus 37 ~~~CP~Cr~~~~~~~~~ 53 (56)
T 1bor_A 37 GMQCPICQAPWPLGADT 53 (56)
T ss_dssp SSSCSSCCSSSSCCSSC
T ss_pred CCCCCcCCcEeecCCcC
Confidence 56899999876555443
Done!