RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6417
         (194 letters)



>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 133

 Score = 54.2 bits (130), Expect = 2e-10
 Identities = 11/66 (16%), Positives = 25/66 (37%)

Query: 23  NSSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTE 82
            + +  T +V + +GA V ++ N  DA   ++      +  L  +  +L  + D      
Sbjct: 63  KAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLS 122

Query: 83  VNMARV 88
                +
Sbjct: 123 PQAEEL 128


>d2uubr1 a.4.8.1 (R:19-88) Ribosomal protein S18 {Thermus
           thermophilus [TaxId: 274]}
          Length = 70

 Score = 31.2 bits (71), Expect = 0.013
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 157 KEKVVCILCKMKIKPDYKNIKLLSQFVS 184
           K KV   L +  +  DY+N+++L +F+S
Sbjct: 1   KAKVKATLGEFDL-RDYRNVEVLKRFLS 27


>d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli
           [TaxId: 562]}
          Length = 55

 Score = 28.8 bits (65), Expect = 0.061
 Identities = 5/13 (38%), Positives = 9/13 (69%)

Query: 172 DYKNIKLLSQFVS 184
           DYK+I  L  +++
Sbjct: 3   DYKDIATLKNYIT 15


>d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing protein
           1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 60

 Score = 25.7 bits (56), Expect = 0.84
 Identities = 5/24 (20%), Positives = 9/24 (37%)

Query: 147 PAEDLKNPFQKEKVVCILCKMKIK 170
                    Q +K+ C +C  +I 
Sbjct: 10  DTNAEGCILQWKKIYCRICMAQIA 33


>d2pk8a1 d.274.1.1 (A:2-95) Hypothetical protein PF0899 {Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 94

 Score = 24.5 bits (53), Expect = 4.0
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 132 YEIDFTLGDPEASNKPAEDLKNPFQKEKVVCILCKMKI 169
           +  D  L   EA N  +  LK   ++E     +  +KI
Sbjct: 25  FNPDIILFGREAYNFLSNLLKKEMEEEGPFTHVSNIKI 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0717    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 678,389
Number of extensions: 29084
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 10
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.1 bits)