BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6420
         (169 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2X7G|A Chain A, Structure Of Human Serine-Arginine-Rich Protein-Specific
          Kinase 2 (Srpk2) Bound To Purvalanol B
          Length = 389

 Score = 30.8 bits (68), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 6  TWKNWKSHGIRKLAKKSWKSSLHF----VKRIHLLKIVFSSHPRTPSKLSIV 53
           W  W   G R +A K  KS+ H+    +  I LLK V  S P  P+K  +V
Sbjct: 47 VWLCWDMQGKRFVAMKVVKSAQHYTETALDEIKLLKCVRESDPSDPNKDMVV 98


>pdb|1WBP|A Chain A, Srpk1 Bound To 9mer Docking Motif Peptide
 pdb|1WAK|A Chain A, X-Ray Structure Of Srpk1
          Length = 397

 Score = 28.9 bits (63), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 7   WKNWKSHGIRKLAKKSWKSSLHF----VKRIHLLKIVFSSHPRTPSKLSIV 53
           W +W   G + +A K  KS+ H+    +  I LLK V +S P  P++  +V
Sbjct: 54  WLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVV 104


>pdb|3BEG|A Chain A, Crystal Structure Of Sr Protein Kinase 1 Complexed To
          Its Substrate AsfSF2
          Length = 381

 Score = 28.5 bits (62), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 7  WKNWKSHGIRKLAKKSWKSSLHF----VKRIHLLKIVFSSHPRTPSKLSIV 53
          W +W   G + +A K  KS+ H+    +  I LLK V +S P  P++  +V
Sbjct: 38 WLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVV 88


>pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1
          From Arabidopsis Thaliana
 pdb|1U3D|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1
          From Arabidopsis Thaliana With Amppnp Bound
          Length = 509

 Score = 27.7 bits (60), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 16/35 (45%)

Query: 52 IVWTRRSRRVVTEPMLWEPTMTDPLRGVVVWAVPE 86
          IVW RR  RV   P L       P+  + VWA  E
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEE 49


>pdb|2QRU|A Chain A, Crystal Structure Of An Alpha/beta Hydrolase Superfamily
           Protein From Enterococcus Faecalis
          Length = 274

 Score = 26.9 bits (58), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 82  WAVPENKTISVTLFKDPRYQTFFPPKNGHKRSHSVKIKFKFSKQLG 127
           + +PEN   S     D   +TF PP      S   ++ F++SK++G
Sbjct: 189 YGLPENGDWSAYALSDETLKTF-PPCFSTASSSDEEVPFRYSKKIG 233


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.135    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,496,577
Number of Sequences: 62578
Number of extensions: 210928
Number of successful extensions: 321
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 320
Number of HSP's gapped (non-prelim): 6
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)