Query psy6420
Match_columns 169
No_of_seqs 41 out of 43
Neff 2.5
Searched_HMMs 46136
Date Fri Aug 16 17:34:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10358 NT-C2: N-terminal C2 99.4 1.3E-12 2.7E-17 95.9 7.5 77 21-107 1-77 (143)
2 KOG0035|consensus 98.6 1.4E-09 3.1E-14 105.8 -4.1 88 14-109 4-92 (890)
3 cd05889 Ig1_DNAM-1_like First 88.0 1.7 3.7E-05 31.8 5.5 63 35-98 2-68 (96)
4 cd05887 Ig1_Nectin-3_like Firs 87.1 2.3 5E-05 31.2 5.7 62 35-97 2-67 (96)
5 cd05846 Ig1_MRC-OX-2_like Firs 85.3 2.7 5.8E-05 29.3 5.1 61 34-95 2-66 (97)
6 cd05886 Ig1_Nectin-1_like Firs 73.4 11 0.00024 27.5 5.3 49 48-96 17-69 (99)
7 cd05718 Ig1_PVR_like First imm 65.1 35 0.00076 22.9 6.0 25 35-59 2-27 (98)
8 PHA02987 Ig domain OX-2-like p 64.9 14 0.0003 31.4 4.8 67 32-101 29-96 (189)
9 cd05877 Ig_LP_like Immunoglobu 34.7 1E+02 0.0023 21.2 4.6 23 35-58 4-31 (106)
10 cd05714 Ig_CSPGs_LP Immunoglob 24.8 2E+02 0.0043 19.9 4.6 24 34-58 3-31 (106)
11 PF07654 C1-set: Immunoglobuli 22.4 1.1E+02 0.0023 20.6 2.8 28 34-61 9-36 (83)
12 PF12988 DUF3872: Domain of un 20.2 1.1E+02 0.0024 25.0 2.9 23 78-100 34-62 (137)
No 1
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=99.39 E-value=1.3e-12 Score=95.93 Aligned_cols=77 Identities=23% Similarity=0.368 Sum_probs=70.8
Q ss_pred cCceeeEEEEEeceEEEEEEcCCCccCCeeEEEEEeecceecCCCcccccCcCCCCceEEEeeCCCceEEEEEEeeCCCC
Q psy6420 21 KSWKSSLHFVKRIHLLKIVFSSHPRTPSKLSIVWTRRSRRVVTEPMLWEPTMTDPLRGVVVWAVPENKTISVTLFKDPRY 100 (169)
Q Consensus 21 nKkAaKFqFTaSyqEL~lEcT~~KWqP~kL~VVWtRR~RRVsSK~~sWePsi~NPyRG~VVWPvPENieI~VTLYKDp~~ 100 (169)
||+|.||+|+.++|+|...+. .+..+.|.|.|++++.. .+.+...++.+|.+.|+ |.+++.+|||+|..+
T Consensus 1 ~~~~~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~----~~~t~~~~~~~~~v~w~--e~~~~~~tl~~~~k~ 70 (143)
T PF10358_consen 1 KKKAVKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKG----SGTTSRANVKNGKVQWN--EEFSFPCTLYRDKKS 70 (143)
T ss_pred CCceeeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCcc----ceeeeeeeccccEEEEe--eEEEEEEEEEEcCCC
Confidence 689999999999999999988 59999999977777655 78889999999999999 999999999999999
Q ss_pred CCCCCCC
Q psy6420 101 QTFFPPK 107 (169)
Q Consensus 101 ~efEDKE 107 (169)
.+|++|+
T Consensus 71 ~~~~~K~ 77 (143)
T PF10358_consen 71 KEFQPKE 77 (143)
T ss_pred CcEeeEE
Confidence 9999997
No 2
>KOG0035|consensus
Probab=98.63 E-value=1.4e-09 Score=105.82 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=79.9
Q ss_pred hhhhh-hccCceeeEEEEEeceEEEEEEcCCCccCCeeEEEEEeecceecCCCcccccCcCCCCceEEEeeCCCceEEEE
Q psy6420 14 GIRKL-AKKSWKSSLHFVKRIHLLKIVFSSHPRTPSKLSIVWTRRSRRVVTEPMLWEPTMTDPLRGVVVWAVPENKTISV 92 (169)
Q Consensus 14 ~Irrl-~snKkAaKFqFTaSyqEL~lEcT~~KWqP~kL~VVWtRR~RRVsSK~~sWePsi~NPyRG~VVWPvPENieI~V 92 (169)
|-+++ +.+++|++|+|++++|+++..+.. +|.|.+|++ |..|+...|++.+.|+++|++.||++++..+..
T Consensus 4 ~~~~l~~e~~~a~~~~~~~~~e~~q~kTft-~W~~s~L~i-------r~~s~ie~~e~D~~n~lk~~~l~ev~~~e~l~~ 75 (890)
T KOG0035|consen 4 GLGRLQREEEWAAKFLLTPAWEKVQLKTFT-KWCNSKLRI-------RAGSSIEEIEEDFSNGLKLLILLEVISGENLPP 75 (890)
T ss_pred hhhccchhhHHHHHhhcCccHHHHhccccc-cccchhhhh-------cccCccchhhhhhhhhhhhhhhcccccCCccCC
Confidence 34556 679999999999999999999999 999999999 899999999999999999999999987777777
Q ss_pred EEeeCCCCCCCCCCCCC
Q psy6420 93 TLFKDPRYQTFFPPKNG 109 (169)
Q Consensus 93 TLYKDp~~~efEDKE~~ 109 (169)
+.+.+.+.|++||++-+
T Consensus 76 ~~~~~~r~hk~En~~~~ 92 (890)
T KOG0035|consen 76 PTRGKMRVHKLENVNKA 92 (890)
T ss_pred CCCCccchhhhccccce
Confidence 77779999999999875
No 3
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=88.02 E-value=1.7 Score=31.76 Aligned_cols=63 Identities=16% Similarity=0.307 Sum_probs=41.8
Q ss_pred EEEEEEcCCCccCCeeEEEEEeecceecCCCccc----ccCcCCCCceEEEeeCCCceEEEEEEeeCC
Q psy6420 35 LLKIVFSSHPRTPSKLSIVWTRRSRRVVTEPMLW----EPTMTDPLRGVVVWAVPENKTISVTLFKDP 98 (169)
Q Consensus 35 EL~lEcT~~KWqP~kL~VVWtRR~RRVsSK~~sW----ePsi~NPyRG~VVWPvPENieI~VTLYKDp 98 (169)
.+.|.|.- .+.-....|.|.++........-.+ .+.+..||+|+|.|..+..-+.+++|..-.
T Consensus 2 ~vtL~C~~-~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt 68 (96)
T cd05889 2 KMKLECVY-PKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNAT 68 (96)
T ss_pred CEEEEeEc-CCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCC
Confidence 46788888 5555677888998754211122333 556889999999998754456666665443
No 4
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=87.05 E-value=2.3 Score=31.18 Aligned_cols=62 Identities=6% Similarity=0.035 Sum_probs=42.7
Q ss_pred EEEEEEcCCCccCCeeEEEEEeecceecCCC----cccccCcCCCCceEEEeeCCCceEEEEEEeeC
Q psy6420 35 LLKIVFSSHPRTPSKLSIVWTRRSRRVVTEP----MLWEPTMTDPLRGVVVWAVPENKTISVTLFKD 97 (169)
Q Consensus 35 EL~lEcT~~KWqP~kL~VVWtRR~RRVsSK~----~sWePsi~NPyRG~VVWPvPENieI~VTLYKD 97 (169)
.+.|.|+= .+.+....|.|.++...-.... ..-.+.+..||+|.|.|..|+--+.+++|..-
T Consensus 2 ~vtL~C~~-~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv 67 (96)
T cd05887 2 NVTLKCRI-QVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENV 67 (96)
T ss_pred CEEEEEEe-cCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCC
Confidence 36788998 8888889999998753111111 12345577899999999777666777776544
No 5
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=85.26 E-value=2.7 Score=29.27 Aligned_cols=61 Identities=7% Similarity=0.051 Sum_probs=35.8
Q ss_pred eEEEEEEcCCCccCCeeEEEEEeecceecCCCc----ccccCcCCCCceEEEeeCCCceEEEEEEe
Q psy6420 34 HLLKIVFSSHPRTPSKLSIVWTRRSRRVVTEPM----LWEPTMTDPLRGVVVWAVPENKTISVTLF 95 (169)
Q Consensus 34 qEL~lEcT~~KWqP~kL~VVWtRR~RRVsSK~~----sWePsi~NPyRG~VVWPvPENieI~VTLY 95 (169)
+.+.|+|+- .-.++...|.|.+.......... .=...+.++|++.+.|..|+.-+.+++|-
T Consensus 2 ~~vtL~C~~-~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~ 66 (97)
T cd05846 2 GNVTLSCNL-TLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIW 66 (97)
T ss_pred CcEEEEEEe-CCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEe
Confidence 357899985 34455568999764332110101 12245677888888887776555555553
No 6
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=73.44 E-value=11 Score=27.45 Aligned_cols=49 Identities=14% Similarity=0.362 Sum_probs=30.1
Q ss_pred CeeEEEEEeecceecCCCccccc----CcCCCCceEEEeeCCCceEEEEEEee
Q psy6420 48 SKLSIVWTRRSRRVVTEPMLWEP----TMTDPLRGVVVWAVPENKTISVTLFK 96 (169)
Q Consensus 48 ~kL~VVWtRR~RRVsSK~~sWeP----si~NPyRG~VVWPvPENieI~VTLYK 96 (169)
+.+.|.|+++..--.....-..| .+..||+|.|.|..|+--+.+++|-.
T Consensus 17 ~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~n 69 (99)
T cd05886 17 KITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSR 69 (99)
T ss_pred CeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcC
Confidence 45679998653211111122333 57789999999987766666666643
No 7
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=65.15 E-value=35 Score=22.91 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=15.9
Q ss_pred EEEEEEcCCCcc-CCeeEEEEEeecc
Q psy6420 35 LLKIVFSSHPRT-PSKLSIVWTRRSR 59 (169)
Q Consensus 35 EL~lEcT~~KWq-P~kL~VVWtRR~R 59 (169)
.+.|.|+-..-. .+...|.|.+...
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~ 27 (98)
T cd05718 2 SVTLECSFPVPGPVQITQVTWMKITG 27 (98)
T ss_pred CEEEEeEeeCCCCceEEEEEEeeECC
Confidence 577888652112 1456899998764
No 8
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=64.89 E-value=14 Score=31.41 Aligned_cols=67 Identities=9% Similarity=0.176 Sum_probs=49.9
Q ss_pred eceEEEEEEcCCCccC-CeeEEEEEeecceecCCCcccccCcCCCCceEEEeeCCCceEEEEEEeeCCCCC
Q psy6420 32 RIHLLKIVFSSHPRTP-SKLSIVWTRRSRRVVTEPMLWEPTMTDPLRGVVVWAVPENKTISVTLFKDPRYQ 101 (169)
Q Consensus 32 SyqEL~lEcT~~KWqP-~kL~VVWtRR~RRVsSK~~sWePsi~NPyRG~VVWPvPENieI~VTLYKDp~~~ 101 (169)
..+++.|.|+. + .| +...|-|.+.+..+.+ -..-.|.+.|||++.+-++.|..-+..+++-+-...|
T Consensus 29 ege~VtLsCs~-t-~s~~~~qVtWkK~~~~Iat-Y~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sD 96 (189)
T PHA02987 29 EHVNVKISCNK-T-SSFNSILITWKKNNKTIAG-YGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKD 96 (189)
T ss_pred CCCCEEEEEec-C-CCCccceEEEEEcCCCEEE-EecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhh
Confidence 34569999998 5 34 6788999998666553 3345688999999999998887777777776655544
No 9
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=34.69 E-value=1e+02 Score=21.19 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=16.5
Q ss_pred EEEEEEcCCCcc-----CCeeEEEEEeec
Q psy6420 35 LLKIVFSSHPRT-----PSKLSIVWTRRS 58 (169)
Q Consensus 35 EL~lEcT~~KWq-----P~kL~VVWtRR~ 58 (169)
.+.|.|+- ... +..+.|.|.+..
T Consensus 4 ~vtL~C~~-~~~~~~~~~~~~~v~W~k~~ 31 (106)
T cd05877 4 NVTLPCRY-HYEPELSAPRKIRVKWTKLE 31 (106)
T ss_pred cEEEEeEe-ECCCcCCCCccceEEEEEec
Confidence 57889975 444 356789998875
No 10
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=24.84 E-value=2e+02 Score=19.86 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=17.2
Q ss_pred eEEEEEEcCCCcc-----CCeeEEEEEeec
Q psy6420 34 HLLKIVFSSHPRT-----PSKLSIVWTRRS 58 (169)
Q Consensus 34 qEL~lEcT~~KWq-----P~kL~VVWtRR~ 58 (169)
+.+.|.|+= ... +..+.|.|.+..
T Consensus 3 ~~V~L~C~~-~~~~~~~~~~~~~i~W~k~~ 31 (106)
T cd05714 3 GNVTLPCRF-HLEPALSAPHGPRIKWTKLE 31 (106)
T ss_pred CCEEEeEEe-ECCcccCCCCCcEEEEEEeC
Confidence 357888986 333 368899999874
No 11
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=22.43 E-value=1.1e+02 Score=20.55 Aligned_cols=28 Identities=11% Similarity=0.344 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccCCeeEEEEEeeccee
Q psy6420 34 HLLKIVFSSHPRTPSKLSIVWTRRSRRV 61 (169)
Q Consensus 34 qEL~lEcT~~KWqP~kL~VVWtRR~RRV 61 (169)
+++.|.|.-...-|..+.|.|.+....+
T Consensus 9 ~~~~L~C~v~~f~P~~i~v~W~~~~~~~ 36 (83)
T PF07654_consen 9 GSVTLTCLVSGFYPKDITVTWLKNGKEV 36 (83)
T ss_dssp SEEEEEEEEEEEBSSTEEEEEEETTEEE
T ss_pred CCEEEEEEEEEEECCCcEEEEEecccee
Confidence 4567888876799999999998765543
No 12
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=20.24 E-value=1.1e+02 Score=24.98 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=14.2
Q ss_pred eEEEeeCC------CceEEEEEEeeCCCC
Q psy6420 78 GVVVWAVP------ENKTISVTLFKDPRY 100 (169)
Q Consensus 78 G~VVWPvP------ENieI~VTLYKDp~~ 100 (169)
.+-+||+| |++||..+|=|+.+-
T Consensus 34 ~v~tmPVpk~I~~GeTvEIR~~l~reG~y 62 (137)
T PF12988_consen 34 TVETMPVPKKIKKGETVEIRCELKREGNY 62 (137)
T ss_dssp EEEE----SS--TTEEEEEEEEEEESS--
T ss_pred EEEEeccccccCCCCEEEEEEEEecCcee
Confidence 35699998 899999999887653
Done!