Query psy6420
Match_columns 169
No_of_seqs 41 out of 43
Neff 2.5
Searched_HMMs 29240
Date Fri Aug 16 17:34:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2le3_A Carnitine O-palmitoyltr 36.9 22 0.00075 23.0 2.3 19 24-42 7-25 (42)
2 2p9r_A Alpha-2-M, alpha-2-macr 30.1 31 0.0011 23.2 2.3 57 90-152 38-96 (102)
3 3nl4_L Antigen binding fragmen 24.1 1.1E+02 0.0039 20.9 4.4 29 34-63 130-158 (213)
4 2aw2_A B and T lymphocyte atte 21.6 2.2E+02 0.0076 21.9 5.9 64 33-97 26-113 (120)
5 3sob_L Antibody light chain; b 21.4 1.6E+02 0.0053 20.4 4.7 30 34-63 151-180 (237)
6 2l3b_A Conserved protein found 21.4 92 0.0031 24.3 3.8 22 78-99 14-41 (130)
7 2l7q_A Conserved protein found 19.8 94 0.0032 24.1 3.5 22 78-99 13-40 (124)
8 3q5y_A TCR N15 beta; IG, T cel 19.7 76 0.0026 22.5 2.8 30 34-63 138-167 (240)
9 1ss6_A P47, NSFL1 cofactor P47 19.6 63 0.0021 23.4 2.4 26 84-109 8-39 (102)
10 3jwd_A HIV-1 GP120 envelope gl 19.4 36 0.0012 30.5 1.2 25 75-104 8-32 (379)
No 1
>2le3_A Carnitine O-palmitoyltransferase 1, liver isoform; membrane protein, amphiphilic structure, membrane-protein interaction, structural switch; NMR {Homo sapiens}
Probab=36.93 E-value=22 Score=22.97 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=16.9
Q ss_pred eeeEEEEEeceEEEEEEcC
Q psy6420 24 KSSLHFVKRIHLLKIVFSS 42 (169)
Q Consensus 24 AaKFqFTaSyqEL~lEcT~ 42 (169)
|.-||||+|-+-++++++.
T Consensus 7 AVaf~ftvt~eG~~~~~~~ 25 (42)
T 2le3_A 7 AVAFQFTVTPDGIDLRLSH 25 (42)
T ss_dssp HCSEEEEEETTEEEEEECH
T ss_pred hheeeeeecCCCccccccH
Confidence 5569999999999999986
No 2
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=30.09 E-value=31 Score=23.16 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=29.6
Q ss_pred EEEEEeeCCCCCCCCCCCCCCcccceeEEEEEEec--ccCCceeeccCCCCceeeeeeccCceEE
Q psy6420 90 ISVTLFKDPRYQTFFPPKNGHKRSHSVKIKFKFSK--QLGNHRICSSKENGSMVGELLANGSFKV 152 (169)
Q Consensus 90 I~VTLYKDp~~~efEDKE~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (169)
+.|+|. ||+..+......-....-.....|..+. .+|+.+|-...++|. ....+|+|
T Consensus 38 ~~v~l~-dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~~~~-----~~~~~F~V 96 (102)
T 2p9r_A 38 PLVYIQ-DPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKSGG-----RTEHPFTV 96 (102)
T ss_dssp EEEEEE-CTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTTSC-----EEEEEEEE
T ss_pred eEEEEE-CCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEECCCC-----eEEEEEEE
Confidence 456665 7776654432111111112334555554 478888887765543 34556665
No 3
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=24.07 E-value=1.1e+02 Score=20.90 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCccCCeeEEEEEeecceecC
Q psy6420 34 HLLKIVFSSHPRTPSKLSIVWTRRSRRVVT 63 (169)
Q Consensus 34 qEL~lEcT~~KWqP~kL~VVWtRR~RRVsS 63 (169)
+.+.|+|....+.| ...|.|.+..+.+..
T Consensus 130 ~~v~l~C~~~g~~P-~~~v~W~k~g~~~~~ 158 (213)
T 3nl4_L 130 GTVTIVCVANKYFP-DVTVTWEVDGTTQTT 158 (213)
T ss_dssp SEEEEEEEEEEEBS-CCEEEEEETTEECCS
T ss_pred CcEeEEEEEecccC-CcEEEEEeCCccCCC
Confidence 47888998755688 789999987766543
No 4
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1
Probab=21.58 E-value=2.2e+02 Score=21.87 Aligned_cols=64 Identities=11% Similarity=0.201 Sum_probs=40.9
Q ss_pred ceEEEEEEcCCCccCCeeEEEEEeec----ceecCCCcccccCc----------------CCCCceEEEeeC----CCce
Q psy6420 33 IHLLKIVFSSHPRTPSKLSIVWTRRS----RRVVTEPMLWEPTM----------------TDPLRGVVVWAV----PENK 88 (169)
Q Consensus 33 yqEL~lEcT~~KWqP~kL~VVWtRR~----RRVsSK~~sWePsi----------------~NPyRG~VVWPv----PENi 88 (169)
=+.++|||.- +---+.=.|.|.+=+ -+....+++|+..- .-+||+.+=.++ -..+
T Consensus 26 G~~f~leCpv-~yc~~rP~VtWcKln~~~c~~L~~~~q~w~E~~N~s~fvLhf~~V~~sDsGsYRCsAn~~sg~ieSHsv 104 (120)
T 2aw2_A 26 GDPFELECPV-KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHST 104 (120)
T ss_dssp TSCEEEEEEE-ECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred CCeEEEEccE-EeccCCCceEEEecCCceEEECccccccceecCCeeEEEEEEeeeeEcCCcceEEEeeCCCCcEEeeEE
Confidence 3557889987 665556689999988 56667777776531 124566655554 3555
Q ss_pred EEEEEEeeC
Q psy6420 89 TISVTLFKD 97 (169)
Q Consensus 89 eI~VTLYKD 97 (169)
+|.||=||.
T Consensus 105 tI~Vt~~~~ 113 (120)
T 2aw2_A 105 TLYVTDVKH 113 (120)
T ss_dssp EEEEECGGG
T ss_pred EEEEEeccc
Confidence 555655554
No 5
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=21.40 E-value=1.6e+02 Score=20.43 Aligned_cols=30 Identities=10% Similarity=0.097 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCccCCeeEEEEEeecceecC
Q psy6420 34 HLLKIVFSSHPRTPSKLSIVWTRRSRRVVT 63 (169)
Q Consensus 34 qEL~lEcT~~KWqP~kL~VVWtRR~RRVsS 63 (169)
+.+.|+|....+.|....|.|.+....+..
T Consensus 151 ~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~ 180 (237)
T 3sob_L 151 GTASVVCLLNNFYPREAKVQWKVDNALQSG 180 (237)
T ss_dssp TEEEEEEEEEEEBSSCCEEEEEETTEECCS
T ss_pred CceEEEEEEcccCCCceEEEEEECCCCCCC
Confidence 368899987556786789999987665543
No 6
>2l3b_A Conserved protein found in conjugate transposon; beta, structural genomics, PSI-biology; NMR {Bacteroides thetaiotaomicron}
Probab=21.40 E-value=92 Score=24.28 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=18.1
Q ss_pred eEEEeeCC------CceEEEEEEeeCCC
Q psy6420 78 GVVVWAVP------ENKTISVTLFKDPR 99 (169)
Q Consensus 78 G~VVWPvP------ENieI~VTLYKDp~ 99 (169)
.+-+||+| |++||-.||=|+.+
T Consensus 14 ~v~tmPV~k~I~~GeTvEIR~~L~reG~ 41 (130)
T 2l3b_A 14 SIETMPVPKKLKVGETAEIRCQLHRDGR 41 (130)
T ss_dssp EEEECCCCSSCCTTCEEEEEEEEECSSC
T ss_pred eEEEeccccccCCCCeEEEEEEEecCce
Confidence 35699998 88999999987754
No 7
>2l7q_A Conserved protein found in conjugate transposon; NESG, structural genomics, PSI-biology; NMR {Bacteroides vulgatus}
Probab=19.80 E-value=94 Score=24.05 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=18.2
Q ss_pred eEEEeeCC------CceEEEEEEeeCCC
Q psy6420 78 GVVVWAVP------ENKTISVTLFKDPR 99 (169)
Q Consensus 78 G~VVWPvP------ENieI~VTLYKDp~ 99 (169)
.+-+||+| |++||-.+|=++.+
T Consensus 13 ~v~tmPV~k~I~~GeTvEIR~~L~reG~ 40 (124)
T 2l7q_A 13 TVESMPVADEIAGDETVEIRLEIKPSGN 40 (124)
T ss_dssp EEEECCCCSCCCSSEEEEEEEEEEECCC
T ss_pred eEEEeccccccCCCCeEEEEEEEecCce
Confidence 35699998 88999999988765
No 8
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=19.73 E-value=76 Score=22.54 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCccCCeeEEEEEeecceecC
Q psy6420 34 HLLKIVFSSHPRTPSKLSIVWTRRSRRVVT 63 (169)
Q Consensus 34 qEL~lEcT~~KWqP~kL~VVWtRR~RRVsS 63 (169)
+.+.|.|....|.|..+.|.|.+-.+.+.+
T Consensus 138 ~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~ 167 (240)
T 3q5y_A 138 QKATLVCLARGFFPDHVELSWWVNGKEVHS 167 (240)
T ss_dssp SEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred CceEEEEEEeeEECCCeEEEEEECCEECcC
Confidence 568888987667888888999886665543
No 9
>1ss6_A P47, NSFL1 cofactor P47, P47 protein, P97; , SEP, signaling protein; NMR {Homo sapiens} SCOP: d.245.1.1
Probab=19.65 E-value=63 Score=23.44 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=20.1
Q ss_pred CCCceEEEEEEeeCCC---C---CCCCCCCCC
Q psy6420 84 VPENKTISVTLFKDPR---Y---QTFFPPKNG 109 (169)
Q Consensus 84 vPENieI~VTLYKDp~---~---~efEDKE~~ 109 (169)
.|+.+.+.+|||+|.= + ..|+|.+|-
T Consensus 8 ~~~~~~~~ltlw~nGFtVdDGplR~ydDP~N~ 39 (102)
T 1ss6_A 8 SSQDVHVVLKLWKSGFSLDNGELRSYQDPSNA 39 (102)
T ss_dssp CCSCEEEEEEEESSEEEETTSCEEETTCTTTH
T ss_pred CCCCceEEEEEecCceEecCCCcccCCCHhHH
Confidence 4788999999999842 2 358999884
No 10
>3jwd_A HIV-1 GP120 envelope glycoprotein; HIV-1 viral spike, molecular motion, protein architecture, R triggered entry, type 1 fusion protein, cell membrane, DISU bond; HET: YCM NAG; 2.61A {Human immunodeficiency virus 1} PDB: 1meq_A
Probab=19.39 E-value=36 Score=30.48 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=20.1
Q ss_pred CCceEEEeeCCCceEEEEEEeeCCCCCCCC
Q psy6420 75 PLRGVVVWAVPENKTISVTLFKDPRYQTFF 104 (169)
Q Consensus 75 PyRG~VVWPvPENieI~VTLYKDp~~~efE 104 (169)
=|=|++||- |..+|||.-+++..|+
T Consensus 8 VyyGvPvWk-----~a~ttlfCasdak~~~ 32 (379)
T 3jwd_A 8 VYYGVPVWK-----EATTTLFCASDAKAYD 32 (379)
T ss_dssp CCCEEEEEE-----ECCCCCEEECCCCTTC
T ss_pred EEeCCcccc-----cCCCceeeccCccccc
Confidence 377999997 5667999988887776
Done!