Query psy6420
Match_columns 169
No_of_seqs 41 out of 43
Neff 2.5
Searched_HMMs 13730
Date Fri Aug 16 17:34:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6420.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6420hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jata_ d.20.1.1 (A:) Ubiquiti 22.5 13 0.00096 25.8 1.0 45 58-105 5-49 (152)
2 d1ah9a_ b.40.4.5 (A:) Translat 21.8 22 0.0016 22.8 1.9 16 140-155 11-26 (71)
3 d1n26a1 b.1.1.4 (A:1-93) Inter 21.2 35 0.0025 21.1 2.9 30 34-64 22-51 (93)
4 d1ss6a_ d.245.1.1 (A:) NSFL1 ( 19.0 29 0.0021 23.6 2.3 25 85-109 9-39 (102)
5 d1iama1 b.1.1.3 (A:83-185) Int 18.7 43 0.0031 20.9 2.9 29 34-62 20-49 (103)
6 d2cb2a1 d.58.4.17 (A:2-308) Su 18.0 15 0.0011 30.1 0.5 11 4-14 76-86 (307)
7 d1hkfa_ b.1.1.1 (A:) NK cell a 18.0 77 0.0056 19.3 4.1 24 34-57 12-35 (108)
8 d1hyrc1 b.1.1.2 (C:181-274) Cl 15.0 59 0.0043 20.1 2.9 31 34-64 16-46 (94)
9 d1f2qa2 b.1.1.4 (A:86-174) IgE 14.5 79 0.0058 18.9 3.3 29 34-63 16-44 (89)
10 d2mhaa1 b.1.1.2 (A:182-270) Cl 14.0 80 0.0058 19.4 3.3 33 32-64 14-46 (89)
No 1
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Probab=22.47 E-value=13 Score=25.80 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=33.5
Q ss_pred cceecCCCcccccCcCCCCceEEEeeCCCceEEEEEEeeCCCCCCCCC
Q psy6420 58 SRRVVTEPMLWEPTMTDPLRGVVVWAVPENKTISVTLFKDPRYQTFFP 105 (169)
Q Consensus 58 ~RRVsSK~~sWePsi~NPyRG~VVWPvPENieI~VTLYKDp~~~efED 105 (169)
.||+..+..+++ +||..|..+.|.++|+..-..+...|...-||+
T Consensus 5 ~rRl~~E~~~l~---~~~~~g~~~~p~~~n~~~w~~~i~gp~~t~y~g 49 (152)
T d1jata_ 5 PKRIIKETEKLV---SDPVPGITAEPHDDNLRYFQVTIEGPEQSPYED 49 (152)
T ss_dssp CHHHHHHHHHHH---HSCCTTEEEEEETTEEEEEEEEEECCTTSTTTT
T ss_pred HHHHHHHHHHHH---hCCCCCEEEEEcCCccchhheeeeCCchhhhcC
Confidence 466766666665 578899999999888877655556777777864
No 2
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=21.81 E-value=22 Score=22.81 Aligned_cols=16 Identities=38% Similarity=0.260 Sum_probs=13.3
Q ss_pred eeeeeeccCceEEEEE
Q psy6420 140 MVGELLANGSFKVLCI 155 (169)
Q Consensus 140 ~~~~~~~~~~~~~~~~ 155 (169)
.|-|+|.||-|+|.|-
T Consensus 11 ~V~e~lg~~~f~V~l~ 26 (71)
T d1ah9a_ 11 TVLETLPNTMFRVELE 26 (71)
T ss_dssp EEEEECSSSEEEEEET
T ss_pred EEEEEcCCCEEEEEeC
Confidence 4668899999999884
No 3
>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.20 E-value=35 Score=21.08 Aligned_cols=30 Identities=7% Similarity=0.201 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCccCCeeEEEEEeecceecCC
Q psy6420 34 HLLKIVFSSHPRTPSKLSIVWTRRSRRVVTE 64 (169)
Q Consensus 34 qEL~lEcT~~KWqP~kL~VVWtRR~RRVsSK 64 (169)
+.+.|+|.. .=.|....|.|.|..+...+.
T Consensus 22 ~~v~L~C~~-~g~~~~~~i~W~k~~~~l~~~ 51 (93)
T d1n26a1 22 DSVTLTCPG-VEPEDNATVHWVLRKPAAGSH 51 (93)
T ss_dssp CCEEEECTT-SCTTCCSEEEEEEECSSSSCC
T ss_pred CcEEEEEEe-ecCCCCceEEEEEccccccce
Confidence 678999987 556767889999987766544
No 4
>d1ss6a_ d.245.1.1 (A:) NSFL1 (p97 ATPase) cofactor p47, SEP domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.01 E-value=29 Score=23.60 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=19.0
Q ss_pred CCceEEEEEEeeCCC---C---CCCCCCCCC
Q psy6420 85 PENKTISVTLFKDPR---Y---QTFFPPKNG 109 (169)
Q Consensus 85 PENieI~VTLYKDp~---~---~efEDKE~~ 109 (169)
++.++|.+|||+|.= + ..|+|.||-
T Consensus 9 ~~~v~v~l~lw~nGFtVdDGplR~yddP~N~ 39 (102)
T d1ss6a_ 9 SQDVHVVLKLWKSGFSLDNGELRSYQDPSNA 39 (102)
T ss_dssp CSCEEEEEEEESSEEEETTSCEEETTCTTTH
T ss_pred CCcceEEEEEecCceEecCCCcccCCCHhHH
Confidence 588999999999842 2 348888883
No 5
>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.70 E-value=43 Score=20.89 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCccC-CeeEEEEEeecceec
Q psy6420 34 HLLKIVFSSHPRTP-SKLSIVWTRRSRRVV 62 (169)
Q Consensus 34 qEL~lEcT~~KWqP-~kL~VVWtRR~RRVs 62 (169)
+++.|+|...--.| ..+.|.|.+..+.+.
T Consensus 20 ~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~ 49 (103)
T d1iama1 20 KQLTLRCQVEGGAPRAQLTVVLLRGEKELK 49 (103)
T ss_dssp SEEEEEEEEECCBCGGGEEEEEEETTEEEE
T ss_pred CEEEEEEEecCCCCCCceEEEEcccccccc
Confidence 67899998744677 568999988876653
No 6
>d2cb2a1 d.58.4.17 (A:2-308) Sulfur oxygenase reductase SOR {Acidianus ambivalens [TaxId: 2283]}
Probab=18.02 E-value=15 Score=30.15 Aligned_cols=11 Identities=55% Similarity=1.461 Sum_probs=9.3
Q ss_pred eEeeecccchh
Q psy6420 4 YVTWKNWKSHG 14 (169)
Q Consensus 4 ~~~~~~~~~~~ 14 (169)
|--||+||+|-
T Consensus 76 YTmWK~wkDHE 86 (307)
T d2cb2a1 76 YTFWKDWKDHE 86 (307)
T ss_dssp EEEESSHHHHH
T ss_pred eeeecccccHH
Confidence 67899999984
No 7
>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.99 E-value=77 Score=19.32 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=14.5
Q ss_pred eEEEEEEcCCCccCCeeEEEEEee
Q psy6420 34 HLLKIVFSSHPRTPSKLSIVWTRR 57 (169)
Q Consensus 34 qEL~lEcT~~KWqP~kL~VVWtRR 57 (169)
+.+.|.|+-+.-.++.-.+.|-|-
T Consensus 12 ~svtl~C~~~~~~~~~~~~~W~r~ 35 (108)
T d1hkfa_ 12 QTLTVRCQYPPTGSLYEKKGWCKE 35 (108)
T ss_dssp CCEEEEEECCCCTTCCCEEEEEEE
T ss_pred CCEEEEEEECCCCCCCCEEEEEEe
Confidence 457889975233344445678764
No 8
>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}
Probab=14.95 E-value=59 Score=20.12 Aligned_cols=31 Identities=6% Similarity=0.245 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCccCCeeEEEEEeecceecCC
Q psy6420 34 HLLKIVFSSHPRTPSKLSIVWTRRSRRVVTE 64 (169)
Q Consensus 34 qEL~lEcT~~KWqP~kL~VVWtRR~RRVsSK 64 (169)
.++.|.|.-.---|..+.|.|.+....+.+.
T Consensus 16 ~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~ 46 (94)
T d1hyrc1 16 GNITVTCRASGFYPWNITLSWRQDGVSLSHD 46 (94)
T ss_dssp SEEEEEEEEEEEBSSCCEEEEEETTEECCST
T ss_pred CCEEEEEEEEEEECCCcEEEEeECCeEcCCC
Confidence 4566777765688999999999877665544
No 9
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.45 E-value=79 Score=18.85 Aligned_cols=29 Identities=7% Similarity=0.038 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCccCCeeEEEEEeecceecC
Q psy6420 34 HLLKIVFSSHPRTPSKLSIVWTRRSRRVVT 63 (169)
Q Consensus 34 qEL~lEcT~~KWqP~kL~VVWtRR~RRVsS 63 (169)
+.+.|.|.. .-.|....+.|.|.++.+..
T Consensus 16 ~~v~L~C~~-~~~~~~~~~~w~k~g~~~~~ 44 (89)
T d1f2qa2 16 QPLFLRCHG-WRNWDVYKVIYYKDGEALKY 44 (89)
T ss_dssp SCEEEEEEE-GGGCCEEEEEEEETTEECCS
T ss_pred CEEEEEEEe-cCCCCCeEEEEEEeeecccc
Confidence 457899987 66677789999988876643
No 10
>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.04 E-value=80 Score=19.35 Aligned_cols=33 Identities=6% Similarity=0.236 Sum_probs=26.0
Q ss_pred eceEEEEEEcCCCccCCeeEEEEEeecceecCC
Q psy6420 32 RIHLLKIVFSSHPRTPSKLSIVWTRRSRRVVTE 64 (169)
Q Consensus 32 SyqEL~lEcT~~KWqP~kL~VVWtRR~RRVsSK 64 (169)
+=+++.|.|.-..--|..+.|.|.+.+..+.+.
T Consensus 14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~ 46 (89)
T d2mhaa1 14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQD 46 (89)
T ss_dssp CSSEEEEEEEEESCBSSCCEEEEEETTEEECTT
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCC
Confidence 346788899887889999999999877665543
Done!