RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6420
         (169 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 33/179 (18%), Positives = 54/179 (30%), Gaps = 68/179 (37%)

Query: 21  KSWKSSLHFVKRIHL-LKIVFS----SH---PRTPSKLSIVWTRRSRRVVTE----PMLW 68
            SW+S   F   +   + ++F      +   P T    SI+          E    PML 
Sbjct: 287 DSWES---FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL---EDSLENNEGVPSPML- 339

Query: 69  EPTMTDPLRGVVVWAV-------PENKTISVTLFKDPRYQTFF----PPK-----NGHKR 112
             ++++  +  V   V       P  K + ++L    +         PP+     N   R
Sbjct: 340 --SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN---LVVSGPPQSLYGLNLTLR 394

Query: 113 SHSVKIKFKFSKQLGNHRICSSKENGSMVGELLANGSFKVLCIQYFVLVYLPNIT---H 168
                 K K    L   RI  S+               K+     F   +LP +    H
Sbjct: 395 ------KAKAPSGLDQSRIPFSER--------------KL----KFSNRFLP-VASPFH 428



 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 48/145 (33%)

Query: 1    MG--LYVTWKNWKSHGIRKL---AKKSWKSSLHFVKRIHLLKIVFSSHPRTPSKLSIVWT 55
            MG  LY T     S   + +   A   +K +  F     +L IV ++    P  L+I + 
Sbjct: 1631 MGMDLYKT-----SKAAQDVWNRADNHFKDTYGFS----ILDIVINN----PVNLTIHFG 1677

Query: 56   RRSRRVVTE---PMLWEPTMTDPLRGVVV------------WAVPE---NKT-------- 89
                + + E    M++E  +   L+   +            +   +   + T        
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737

Query: 90   -ISVTLFKDPRYQTFFPPKN---GH 110
             +    F+D + +   P      GH
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGH 1762



 Score = 26.6 bits (58), Expect = 6.3
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 13/45 (28%)

Query: 36  LKI-VFS----SHPRTPSK---LSIVWTRRSRRVVTEPMLWEPTM 72
           ++I V+     S  R  S      IV       ++  P+ WE T 
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIV-----DCIIRLPVKWETTT 494


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 47/175 (26%)

Query: 6   TWKNWKSHGIRKLAKKSWKSSLHFVK----RIHLLKI-VFSSHPRTPSK-LSIVWTRRSR 59
           TW NWK     KL     +SSL+ ++    R    ++ VF      P+  LS++W    +
Sbjct: 343 TWDNWKHVNCDKL-TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 60  RVVTEPMLWEPTMTDPLRGVVVWAVPENKTISVTLFKDPRYQTFFPPKNGHKRSHSV--K 117
               + M+    + + L            ++   + K         PK       S+  +
Sbjct: 402 S---DVMV----VVNKLH---------KYSL---VEKQ--------PKESTISIPSIYLE 434

Query: 118 IKFKFSKQLGNHRICSSKENGSMVGELLANGSFKVLCI-QYFV--LVYLPNITHM 169
           +K K   +   HR      N   + +   +       + QYF   + +     H+
Sbjct: 435 LKVKLENEYALHRSIVDHYN---IPKTFDSDDLIPPYLDQYFYSHIGH-----HL 481


>2zfn_A RTT109, regulator of TY1 transposition protein 109; histone H3
           lysine 56 acetylation, DNA damage, DNA repair, NU
           transcription; HET: ALY ACO; 1.90A {Saccharomyces
           cerevisiae} PDB: 2rim_A 3q33_A* 3q35_A* 3q66_C* 3q68_C*
           3d35_A* 3qm0_A* 3cz7_A*
          Length = 460

 Score = 26.8 bits (58), Expect = 4.9
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 30  VKRIHLLKIVFSSHPRTPSKLSIVWTRRSRRVVTEPMLWEPTMTDPLRGVVVWAVPENKT 89
           ++    +     S   TP++   +  RR ++  +  +    +        + +  P    
Sbjct: 151 IRSYKKISPELISAASTPARTLRILARRLKQSGSTVLKEIESPRFQQDLYLSFTCPREIL 210

Query: 90  ISVTLFKDPRYQTFFP--PKNGHKR 112
             + LF  P  Q  FP   KN  K 
Sbjct: 211 TKICLFTRPASQYLFPDSSKNSKKH 235


>2xki_A Neural hemoglobin; oxygen storage, metal-binding; HET: HEM SO4;
           1.30A {Cerebratulus lacteus} PDB: 1kr7_A* 1v07_A*
           2xkg_A* 2xkh_A* 2vyz_A* 2vyy_A*
          Length = 110

 Score = 25.0 bits (54), Expect = 8.7
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 11/59 (18%)

Query: 79  VVVWAVPENKTISVTLFK-DPRYQTFFP---------PKNGHKRSHSVKIKFKFSKQLG 127
           +V WA          LFK  P YQ  F            N   ++ + K     +  +G
Sbjct: 1   MVNWAAVV-DDFYQELFKAHPEYQNKFGFKGVALGSLKGNAAYKTQAGKTVDYINAAIG 58


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.135    0.435 

Gapped
Lambda     K      H
   0.267   0.0779    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,620,689
Number of extensions: 136903
Number of successful extensions: 224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 9
Length of query: 169
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 82
Effective length of database: 4,272,666
Effective search space: 350358612
Effective search space used: 350358612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.5 bits)