RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6420
         (169 letters)



>d1azoa_ c.52.1.14 (A:) DNA mismatch repair protein MutH from
           {Escherichia coli [TaxId: 562]}
          Length = 226

 Score = 25.9 bits (57), Expect = 2.3
 Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 9/58 (15%)

Query: 17  KLAKKSWKSSLHFVKRIHLLKIVFSSHPRTPSKLSIVWTRRSRRVVTEPMLWEPTMTD 74
             +  +W++S H   ++  +  +      +           ++R V  P+LW P   +
Sbjct: 99  GNSGVTWETS-HVRHKLKRVLWIPVEGEAS--------IPLAQRRVGSPLLWSPNEEE 147


>d1n7va_ b.126.1.1 (A:) Adsorption protein p2 {Bacteriophage prd1
           [TaxId: 10658]}
          Length = 555

 Score = 25.8 bits (56), Expect = 3.1
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 12/75 (16%)

Query: 65  PMLWEPTMT------DPLRGVVVWAVPENKTISVTLFKDPRYQTFFPP---KNGHKRSHS 115
           P  +E  +       +P+  V    VP  + I+V +F   ++ T  PP    N +     
Sbjct: 275 PCAYEAGIILVRQTSNPMNAVAGRLVPYVEDIAVDIFLTGKFFTLNPPLRITNNYFADDE 334

Query: 116 VKIKFKFSKQLGNHR 130
           VK   + +  +GN+ 
Sbjct: 335 VK---ENTVTIGNYT 346


>d1hw6a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A
           {Corynebacterium sp. [TaxId: 1720]}
          Length = 262

 Score = 25.0 bits (53), Expect = 5.7
 Identities = 7/56 (12%), Positives = 21/56 (37%)

Query: 7   WKNWKSHGIRKLAKKSWKSSLHFVKRIHLLKIVFSSHPRTPSKLSIVWTRRSRRVV 62
                +H ++  +        + +     +    ++H +TP++  + W  +   VV
Sbjct: 173 TDWAAAHDVKIESWGPLGQGKYDLFGAEPVTAAAAAHGKTPAQAVLRWHLQKGFVV 228


>d2cb2a1 d.58.4.17 (A:2-308) Sulfur oxygenase reductase SOR
          {Acidianus ambivalens [TaxId: 2283]}
          Length = 307

 Score = 24.4 bits (53), Expect = 8.9
 Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 2/22 (9%)

Query: 4  YVTWKNWKSHGIRKLAKKSWKS 25
          Y  WK+WK H   ++ +++W  
Sbjct: 76 YTFWKDWKDH--EEMHRQNWSY 95


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.435 

Gapped
Lambda     K      H
   0.267   0.0615    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 665,887
Number of extensions: 28886
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 6
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.3 bits)