Query psy6422
Match_columns 182
No_of_seqs 134 out of 153
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 17:37:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6422.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6422hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kz5_E Protein SOPB; partition 22.0 31 0.0011 23.2 1.1 19 61-79 29-47 (52)
2 2k89_A PLA2P, PLAP, phospholip 18.5 1.1E+02 0.0039 21.8 3.5 25 52-76 42-66 (80)
3 3e9v_A Protein BTG2; B-cell tr 11.0 1.5E+02 0.005 22.4 2.5 39 50-88 9-48 (120)
4 1bcp_F Pertussis toxin; ADP-ri 10.9 1E+02 0.0034 22.5 1.4 13 84-96 49-63 (99)
5 2lh0_A Histone chaperone RTT10 10.6 2.2E+02 0.0077 19.9 3.1 29 62-90 10-40 (70)
6 2nl9_A Fusion protein consisti 8.1 2.6E+02 0.0088 21.2 2.9 20 6-25 89-108 (157)
7 1t77_A Lipopolysaccharide-resp 7.7 1.2E+02 0.0042 27.5 1.0 30 65-94 325-355 (414)
8 4hw4_A Induced myeloid leukemi 7.6 2.8E+02 0.0094 21.4 2.9 21 6-26 89-109 (157)
9 3e5a_B Targeting protein for X 7.6 1.4E+02 0.0048 19.3 1.0 11 80-90 28-38 (44)
10 2vof_A BCL-2-related protein A 7.0 3.1E+02 0.011 20.8 2.9 21 6-26 89-109 (157)
No 1
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=22.05 E-value=31 Score=23.18 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=16.8
Q ss_pred HhcCChHHHHHHHHHhcCc
Q psy6422 61 RMNMPPEYRSIISKVLGDL 79 (182)
Q Consensus 61 RsNLP~e~r~~It~vLG~l 79 (182)
|+++|.+...+|..+|.+.
T Consensus 29 ~~~iP~~~IeKIE~lL~e~ 47 (52)
T 3kz5_E 29 RSRVPTECIEKIEAILKEL 47 (52)
T ss_dssp TTTSCHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 7889999999999999853
No 2
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=18.53 E-value=1.1e+02 Score=21.79 Aligned_cols=25 Identities=12% Similarity=0.402 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHh
Q psy6422 52 YFVSSVLLMRMNMPPEYRSIISKVL 76 (182)
Q Consensus 52 YfISSvLLiRsNLP~e~r~~It~vL 76 (182)
|.++.--+-|.+||..|+.+|-+.+
T Consensus 42 ~~aAqkFi~~n~Lp~~yldqI~~FI 66 (80)
T 2k89_A 42 WLTAYNFLQKNDLNPMFLDQVAKFI 66 (80)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6777788899999999999887765
No 3
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=10.97 E-value=1.5e+02 Score=22.45 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhcC-cccchhhhhH
Q psy6422 50 GMYFVSSVLLMRMNMPPEYRSIISKVLGD-LQFNFYHRWF 88 (182)
Q Consensus 50 G~YfISSvLLiRsNLP~e~r~~It~vLG~-lef~f~~~WF 88 (182)
++.|+++.|--|.++|.+....-.+-|++ +.=.|=++||
T Consensus 9 av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~HW~ 48 (120)
T 3e9v_A 9 AVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWF 48 (120)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 77889888877777999987777777763 4444556665
No 4
>1bcp_F Pertussis toxin; ADP-ribosyltransferase, transferase, whooping cough; HET: ATP; 2.70A {Bordetella pertussis} SCOP: b.40.2.1 PDB: 1prt_F 1pto_F*
Probab=10.85 E-value=1e+02 Score=22.54 Aligned_cols=13 Identities=46% Similarity=1.014 Sum_probs=8.9
Q ss_pred hhhhHHHH--HHHHH
Q psy6422 84 YHRWFDVI--FLLSA 96 (182)
Q Consensus 84 ~~~WFD~i--FliSa 96 (182)
.|.|||.+ |.+|+
T Consensus 49 hdtwfdtmlgfaisa 63 (99)
T 1bcp_F 49 HDTWFDTMLGFAISA 63 (99)
T ss_dssp SCTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 58999986 44443
No 5
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=10.57 E-value=2.2e+02 Score=19.92 Aligned_cols=29 Identities=10% Similarity=0.266 Sum_probs=21.9
Q ss_pred hcCChHHHHHHHHHhcC--cccchhhhhHHH
Q psy6422 62 MNMPPEYRSIISKVLGD--LQFNFYHRWFDV 90 (182)
Q Consensus 62 sNLP~e~r~~It~vLG~--lef~f~~~WFD~ 90 (182)
.|||++.+.+|..+... ---.+++.-||.
T Consensus 10 ~~LP~~Lq~kV~aIV~~~PsSl~VF~~Ly~y 40 (70)
T 2lh0_A 10 DELPESLSRKIGTVVRVLPSSLEIFEELYKY 40 (70)
T ss_dssp GGSCHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 48999999999998874 222367777776
No 6
>2nl9_A Fusion protein consisting of induced myeloid LEUK differentiation protein MCL-1 homolog...; apoptosis, MCL-1, BIM; HET: MSE; 1.55A {Rattus norvegicus} PDB: 2nla_A 3d7v_A 3io9_A 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 1wsx_A 2jm6_B 2roc_A 2rod_A 2kbw_A 3mk8_B
Probab=8.12 E-value=2.6e+02 Score=21.17 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=16.1
Q ss_pred ccHHHHHHHHHhhhhHHHHH
Q psy6422 6 TTHRDLIALFLLELEPLTIL 25 (182)
Q Consensus 6 ~~~~~~~~~~~~~~~~L~sl 25 (182)
++|.|.++|+-.++.+...+
T Consensus 89 ~nWGRIValf~F~~~la~~~ 108 (157)
T 2nl9_A 89 TNWGRIVTLISFGAFVAKHL 108 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHH
Confidence 58999999999997665554
No 7
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Probab=7.68 E-value=1.2e+02 Score=27.47 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHhc-CcccchhhhhHHHHHHH
Q psy6422 65 PPEYRSIISKVLG-DLQFNFYHRWFDVIFLL 94 (182)
Q Consensus 65 P~e~r~~It~vLG-~lef~f~~~WFD~iFli 94 (182)
|.+...+-.++|. +..=.=.|.|.|.||..
T Consensus 325 p~~FI~~~R~aLES~~VS~~Lh~WIDLiFGy 355 (414)
T 1t77_A 325 SEEFVHINRLALESEFVSCQLHQWIDLIFGY 355 (414)
T ss_dssp HHHHHHHHHHHHHSHHHHTTHHHHHHHHTST
T ss_pred HHHHHHHHHHHHcChHhhhhhhhhhhhhcCc
Confidence 5677777778887 33334689999999964
No 8
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=7.64 E-value=2.8e+02 Score=21.37 Aligned_cols=21 Identities=14% Similarity=0.110 Sum_probs=17.8
Q ss_pred ccHHHHHHHHHhhhhHHHHHH
Q psy6422 6 TTHRDLIALFLLELEPLTILQ 26 (182)
Q Consensus 6 ~~~~~~~~~~~~~~~~L~sl~ 26 (182)
++|.|.++|+-.++.+.....
T Consensus 89 ~NWGRIVaLfaFgg~la~~~~ 109 (157)
T 4hw4_A 89 TNWGRIVTLISFGAFVAKHLK 109 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 699999999999998876654
No 9
>3e5a_B Targeting protein for XKLP2; aurora A, serine/threonine-protein kinase, cofactor, TPX2, V inhibitor, phosphorylation, ATP-binding, cell cycle; HET: TPO VX6; 2.30A {Homo sapiens} PDB: 3ha6_B* 1ol5_B*
Probab=7.62 E-value=1.4e+02 Score=19.31 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=8.3
Q ss_pred ccchhhhhHHH
Q psy6422 80 QFNFYHRWFDV 90 (182)
Q Consensus 80 ef~f~~~WFD~ 90 (182)
+..=+|.|||.
T Consensus 28 d~~n~DSWFee 38 (44)
T 3e5a_B 28 DTQNIDSWFEE 38 (44)
T ss_dssp CCGGGGHHHHH
T ss_pred cccchhHHHHH
Confidence 45567999996
No 10
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=7.01 E-value=3.1e+02 Score=20.79 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=17.4
Q ss_pred ccHHHHHHHHHhhhhHHHHHH
Q psy6422 6 TTHRDLIALFLLELEPLTILQ 26 (182)
Q Consensus 6 ~~~~~~~~~~~~~~~~L~sl~ 26 (182)
.||.|.++|+-.++.+-..+.
T Consensus 89 inWGRIVal~~F~g~la~~~~ 109 (157)
T 2vof_A 89 INWGRIVTIFAFGGVLLKKLK 109 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 689999999999888876655
Done!