Query psy6422
Match_columns 182
No_of_seqs 134 out of 153
Neff 3.8
Searched_HMMs 13730
Date Fri Aug 16 17:37:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6422.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6422hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oufa1 a.292.1.1 (A:13-92) Hy 10.0 46 0.0034 22.2 1.1 14 85-98 4-17 (80)
2 d3e9va1 d.370.1.1 (A:9-128) NG 9.8 81 0.0059 22.2 2.5 39 50-88 9-48 (120)
3 d1zuna1 c.26.2.2 (A:1-211) Sul 7.0 81 0.0059 20.7 1.3 28 134-161 21-48 (211)
4 d1o9ra_ a.25.1.1 (A:) Dodecame 6.7 1.5E+02 0.011 20.2 2.8 33 61-93 7-60 (162)
5 d1prtf_ b.40.2.1 (F:) Pertussi 6.3 1E+02 0.0075 20.8 1.6 14 83-96 47-62 (98)
6 d1t77a1 a.169.1.1 (A:2186-2489 6.3 85 0.0062 25.0 1.3 30 66-95 216-246 (304)
7 d1olpa1 a.124.1.1 (A:1-249) Al 5.8 99 0.0072 24.1 1.4 31 62-92 211-244 (249)
8 d1iqpa1 a.80.1.1 (A:233-327) R 5.7 1.5E+02 0.011 18.7 2.1 42 59-100 48-89 (95)
9 d1z9ha1 a.45.1.1 (A:213-373) M 5.4 2.6E+02 0.019 20.0 3.6 28 49-76 72-99 (161)
10 d2hh6a1 a.69.4.1 (A:1-112) Unc 5.3 2.5E+02 0.018 19.2 3.3 44 63-106 26-70 (112)
No 1
>d2oufa1 a.292.1.1 (A:13-92) Hypothetical protein HP0242 {Helicobacter pylori [TaxId: 210]}
Probab=10.05 E-value=46 Score=22.22 Aligned_cols=14 Identities=36% Similarity=0.655 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHH
Q psy6422 85 HRWFDVIFLLSALS 98 (182)
Q Consensus 85 ~~WFD~iFliSal~ 98 (182)
|+|||-+|=++--+
T Consensus 4 dK~~dIif~An~~l 17 (80)
T d2oufa1 4 DKWNDIIFHASKKL 17 (80)
T ss_dssp HHHHHHHHHSCHHH
T ss_pred HHHHHHHHHhhHHH
Confidence 78999999766443
No 2
>d3e9va1 d.370.1.1 (A:9-128) NGF-inducible anti-proliferative protein PC3 (BTG2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.78 E-value=81 Score=22.17 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhcC-cccchhhhhH
Q psy6422 50 GMYFVSSVLLMRMNMPPEYRSIISKVLGD-LQFNFYHRWF 88 (182)
Q Consensus 50 G~YfISSvLLiRsNLP~e~r~~It~vLG~-lef~f~~~WF 88 (182)
++.|+++.|-...++|.+....-.+-|++ +.=.|=++||
T Consensus 9 av~Fl~~ll~~~~~l~~~~~~~F~~~L~~~L~~~y~~HWy 48 (120)
T d3e9va1 9 AVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWF 48 (120)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 67888886555667999998877777775 4445667777
No 3
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=6.95 E-value=81 Score=20.73 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=19.6
Q ss_pred HHHhhhhhhheeeccCCcchHHHHHHHH
Q psy6422 134 ALLSGFGAFFYAISSSKSSNIIVLVLAQ 161 (182)
Q Consensus 134 ~~l~~f~k~f~~~ss~~ss~~ivl~laq 161 (182)
.....+.+...++|++|.|.++.-++.+
T Consensus 21 ~~~~~~d~i~va~SGGKDS~vlL~L~~~ 48 (211)
T d1zuna1 21 EVAAEFDNPVMLYSIGKDSAVMLHLARK 48 (211)
T ss_dssp HHHHHCSSEEEECCSSHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEeCCcHHHHHHHHHHHh
Confidence 3455567888899999988876544444
No 4
>d1o9ra_ a.25.1.1 (A:) Dodecameric ferritin homolog {Agrobacterium tumefaciens, Dps [TaxId: 358]}
Probab=6.71 E-value=1.5e+02 Score=20.18 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=22.5
Q ss_pred HhcCChHHHHHHHHHhc---------------------CcccchhhhhHHHHHH
Q psy6422 61 RMNMPPEYRSIISKVLG---------------------DLQFNFYHRWFDVIFL 93 (182)
Q Consensus 61 RsNLP~e~r~~It~vLG---------------------~lef~f~~~WFD~iFl 93 (182)
+.+||++.+..+.+.|. +.+|.-+|..||..+-
T Consensus 7 ~~~l~~~~~~~~~~~Ln~~La~~~~l~~k~~~~HWnv~G~~F~~lH~~~~~~~~ 60 (162)
T d1o9ra_ 7 KNDLPSNAKSTVIGILNESLASVIDLALVTKQAHWNLKGPQFIAVHELLDTFRT 60 (162)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeCCChHHHHHhHHHHHH
Confidence 45678777777777662 3556677888887763
No 5
>d1prtf_ b.40.2.1 (F:) Pertussis toxin S5 subunit {Bordetella pertussis [TaxId: 520]}
Probab=6.30 E-value=1e+02 Score=20.75 Aligned_cols=14 Identities=43% Similarity=0.850 Sum_probs=9.2
Q ss_pred hhhhhHHHH--HHHHH
Q psy6422 83 FYHRWFDVI--FLLSA 96 (182)
Q Consensus 83 f~~~WFD~i--FliSa 96 (182)
-.+.|||.+ |.+|+
T Consensus 47 ~~~twfdtmlgfaisa 62 (98)
T d1prtf_ 47 EHDTWFDTMLGFAISA 62 (98)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH
Confidence 357899986 44443
No 6
>d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.26 E-value=85 Score=25.05 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCcc-cchhhhhHHHHHHHH
Q psy6422 66 PEYRSIISKVLGDLQ-FNFYHRWFDVIFLLS 95 (182)
Q Consensus 66 ~e~r~~It~vLG~le-f~f~~~WFD~iFliS 95 (182)
.+....-.++|..-. =.=+|+|.|.+|..-
T Consensus 216 ~~FV~~~R~aLES~~VS~~L~~WIDLiFG~k 246 (304)
T d1t77a1 216 EEFVHINRLALESEFVSCQLHQWIDLIFGYK 246 (304)
T ss_dssp HHHHHHHHHHHHSHHHHTTHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHhchHHHhHhhhhHHhhhccc
Confidence 455666666666322 236899999999763
No 7
>d1olpa1 a.124.1.1 (A:1-249) Alpha-toxin, N-terminal domain {Clostridium absonum [TaxId: 29369]}
Probab=5.82 E-value=99 Score=24.11 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=25.0
Q ss_pred hcCChHHHHHHHHHhcC---cccchhhhhHHHHH
Q psy6422 62 MNMPPEYRSIISKVLGD---LQFNFYHRWFDVIF 92 (182)
Q Consensus 62 sNLP~e~r~~It~vLG~---lef~f~~~WFD~iF 92 (182)
++.+.+++.++.+.|++ ..-.|+++||+.+.
T Consensus 211 ~~~~~~~~~~~~~~L~~Aq~~TAGfi~~f~~~v~ 244 (249)
T d1olpa1 211 SNSWDDWEYAASHGVGNAQKGVAGYLYRFLNDVS 244 (249)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 45677889999999995 55669999999863
No 8
>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=5.74 E-value=1.5e+02 Score=18.66 Aligned_cols=42 Identities=12% Similarity=0.319 Sum_probs=30.3
Q ss_pred HHHhcCChHHHHHHHHHhcCcccchhhhhHHHHHHHHHHHhH
Q psy6422 59 LMRMNMPPEYRSIISKVLGDLQFNFYHRWFDVIFLLSALSSI 100 (182)
Q Consensus 59 LiRsNLP~e~r~~It~vLG~lef~f~~~WFD~iFliSal~T~ 100 (182)
+.|.++|++.+..+-+.+++.|.+..+.==+.+=+.+-+..+
T Consensus 48 v~~~~~~~~~k~~ll~~la~~d~rL~~G~~e~iQL~alla~~ 89 (95)
T d1iqpa1 48 VFNLPIEEPKKVLLADKIGEYNFRLVEGANEIIQLEALLAQF 89 (95)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 458999999999999999988887766655555444443333
No 9
>d1z9ha1 a.45.1.1 (A:213-373) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}
Probab=5.36 E-value=2.6e+02 Score=19.98 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy6422 49 MGMYFVSSVLLMRMNMPPEYRSIISKVL 76 (182)
Q Consensus 49 mG~YfISSvLLiRsNLP~e~r~~It~vL 76 (182)
..||+|+--+.=|-++|++.+..+.+.|
T Consensus 72 ~~M~~I~krlkkk~~~~dd~r~~L~~~l 99 (161)
T d1z9ha1 72 AAMYLISKRLKSRHRLQDNVREDLYEAA 99 (161)
T ss_dssp HHHHHHHHHHHHHTTCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCchHHHHHHHHHH
Confidence 5789999999999999999988876655
No 10
>d2hh6a1 a.69.4.1 (A:1-112) Uncharacterized protein BH3980 {Bacillus halodurans [TaxId: 86665]}
Probab=5.29 E-value=2.5e+02 Score=19.19 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=33.8
Q ss_pred cCChHHHHHHHHHhcC-cccchhhhhHHHHHHHHHHHhHhHHhhe
Q psy6422 63 NMPPEYRSIISKVLGD-LQFNFYHRWFDVIFLLSALSSIVFLPFS 106 (182)
Q Consensus 63 NLP~e~r~~It~vLG~-lef~f~~~WFD~iFliSal~T~~~l~~~ 106 (182)
+||++|+..-++++.- ..+.....|-|...++..++....-.-+
T Consensus 26 ~Lp~dy~~~y~~I~~Yl~~~s~~~~~~~~~~il~~Il~l~eea~~ 70 (112)
T d2hh6a1 26 ALPKEYHHAYKAIQKYMWTSGGPTDWQDTKRIFGGILDLFEEGAA 70 (112)
T ss_dssp HSCHHHHHHHHHHHHHHSSTTSBCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998885 3455667788888888887776554443
Done!