RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6422
         (182 letters)



>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT;
           protein-protein complex, translation; HET: MSE; 2.20A
           {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
          Length = 291

 Score = 29.3 bits (66), Expect = 0.59
 Identities = 5/24 (20%), Positives = 9/24 (37%)

Query: 105 FSYVHPNIFLQWTIEQGISRIGVI 128
            SYVH  +         + + G +
Sbjct: 172 GSYVHGAMHSPSLHNLVLGKYGAL 195


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.142    0.409 

Gapped
Lambda     K      H
   0.267   0.0457    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,779,248
Number of extensions: 159377
Number of successful extensions: 488
Number of sequences better than 10.0: 1
Number of HSP's gapped: 488
Number of HSP's successfully gapped: 13
Length of query: 182
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 94
Effective length of database: 4,244,745
Effective search space: 399006030
Effective search space used: 399006030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (25.3 bits)