RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6422
         (182 letters)



>d1dwka1 a.35.1.4 (A:1-86) Cyanase N-terminal domain {Escherichia
          coli [TaxId: 562]}
          Length = 86

 Score = 24.3 bits (53), Expect = 4.0
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 45 LAQIMGM--YFVSSVLLMRMNMPPEYRSIISKVLG 77
          +A   G+   FV++ LL +  +P +   ++   L 
Sbjct: 32 IADGTGLAEAFVTAALLGQQALPADAARLVGAKLD 66


>d2j7qa1 d.3.1.20 (A:1-232) Tegument protein M48; N-terminal domain
           {Murine cytomegalovirus (MCMV) [TaxId: 10366]}
          Length = 232

 Score = 25.2 bits (55), Expect = 4.1
 Identities = 12/122 (9%), Positives = 31/122 (25%), Gaps = 5/122 (4%)

Query: 27  TFFYAISSSKSSNIIVLVLAQIMGMYFVSSVLLMRMNM-PPEYRSII---SKVLGDLQFN 82
            +   I     +  +  VL     +  ++   + R  +    YR      + +       
Sbjct: 34  CYLMGIDPVLDTTSLDAVLDSGARLDAIADEKVKRQALTDHPYRLGTEIPTVIETPAG-I 92

Query: 83  FYHRWFDVIFLLSALSSIVFLPFSYVHPNIFLQWTIEQGISRIGVIGVTVMALLSGFGAF 142
             H         +    +       +   +         +  I  +GV    ++   GA 
Sbjct: 93  TGHALSRPFNGTAETQDLGGYKCLGILDFLTYARGKPLPVYIIVTVGVHTRGVIVARGAT 152

Query: 143 FY 144
           + 
Sbjct: 153 YV 154


>d1v02a_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Sorghum
           bicolor [TaxId: 4558]}
          Length = 484

 Score = 25.6 bits (55), Expect = 5.1
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 69  RSIISKVLGDLQFNFYHRWFDVIFLLSALSSIVFLPFSYVHPNIFLQWTIEQGISRIGV 127
             I+ +  GD+  + YH + + + LL  +    +  FS   P I  + T+  GI+   V
Sbjct: 51  EWIVDRSNGDVAADSYHMYAEDVRLLKEMGMDAY-RFSISWPRILPKGTLAGGINEKRV 108


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.142    0.409 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 656,408
Number of extensions: 27787
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 10
Length of query: 182
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,309,196
Effective search space: 133537992
Effective search space used: 133537992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.5 bits)