Query psy6425
Match_columns 68
No_of_seqs 101 out of 194
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 17:40:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hmc_A Putative prophage lambd 21.5 29 0.00099 22.3 0.8 16 41-56 3-19 (192)
2 4agh_A Mosub1, transcription c 21.5 69 0.0024 20.9 2.6 27 34-61 46-75 (158)
3 1pcf_A P15, transcriptional co 13.6 1.4E+02 0.0049 16.5 2.4 19 43-61 8-29 (66)
4 2x8r_A Glycosyl hydrolase; pep 13.5 89 0.003 20.1 1.7 14 43-56 4-18 (210)
5 2wag_A Lysozyme, putative; hyd 11.3 1E+02 0.0035 20.2 1.5 13 43-55 16-29 (220)
6 1o9a_B FNBB, fibronectin bindi 10.9 37 0.0013 17.0 -0.6 10 26-35 24-33 (36)
7 1jfx_A 1,4-beta-N-acetylmurami 10.6 1.1E+02 0.0038 19.6 1.5 12 44-55 6-18 (217)
8 2lyx_A Uncharacterized protein 9.4 36 0.0012 20.2 -1.2 11 48-58 12-22 (87)
9 2iec_A Uncharacterized protein 8.8 2.4E+02 0.0082 17.9 2.5 19 26-44 100-120 (131)
10 2hev_F Tumor necrosis factor l 8.8 3.9E+02 0.013 17.1 3.5 37 26-63 69-106 (137)
No 1
>3hmc_A Putative prophage lambdaba04, glycosyl hydrolase, 25; endolysin; HET: MES; 1.44A {Bacillus anthracis} SCOP: c.1.8.0 PDB: 2nw0_A
Probab=21.48 E-value=29 Score=22.30 Aligned_cols=16 Identities=25% Similarity=0.605 Sum_probs=11.9
Q ss_pred EEEEEEEEecc-cccee
Q psy6425 41 RLVRQIEVSHW-GNPKN 56 (68)
Q Consensus 41 ~L~R~IeVSHW-gni~v 56 (68)
.+.+-|.|||| |+|..
T Consensus 3 ~m~~GIDVS~~Qg~idw 19 (192)
T 3hmc_A 3 HMGHIIDISKWNGDINW 19 (192)
T ss_dssp CCCEEEEECGGGCSCCH
T ss_pred CCcEEEEcCCCCCCCCH
Confidence 35678999999 57654
No 2
>4agh_A Mosub1, transcription cofactor; ssDNA binding protein; 1.79A {Magnaporthe oryzae}
Probab=21.46 E-value=69 Score=20.89 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=19.6
Q ss_pred CCceEEeEEEEEEEEecc-c--cceeeeEEE
Q psy6425 34 SPFLVVTRLVRQIEVSHW-G--NPKNPDNDS 61 (68)
Q Consensus 34 ~P~~~v~~L~R~IeVSHW-g--ni~veE~y~ 61 (68)
.++-.+.+ .|-|-|+-| | -|.|-|+|+
T Consensus 46 ~~~~~Ls~-~rrvtV~~fkG~~~vdIREyY~ 75 (158)
T 4agh_A 46 NPFWEISD-KRRVGISQFKKMDFINIREYYE 75 (158)
T ss_dssp CEEEESSS-SEEEEEEEETTEEEEEEEEEEE
T ss_pred CEeEEcCC-CcEEEEEeeCCCEEEEeEeEEc
Confidence 34444544 455999999 6 499999996
No 3
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=13.62 E-value=1.4e+02 Score=16.52 Aligned_cols=19 Identities=16% Similarity=0.136 Sum_probs=15.6
Q ss_pred EEEEEEecc-c--cceeeeEEE
Q psy6425 43 VRQIEVSHW-G--NPKNPDNDS 61 (68)
Q Consensus 43 ~R~IeVSHW-g--ni~veE~y~ 61 (68)
.|-|-|+-| | -|.|-|+|.
T Consensus 8 ~rrvtv~~fkG~~~VdIRe~Y~ 29 (66)
T 1pcf_A 8 MRYVSVRDFKGKVLIDIREYWM 29 (66)
T ss_dssp TEEEEEEEETTEEEEEEEEEEE
T ss_pred CeEEEEEEeCCCEEEEEEEEEE
Confidence 477899999 6 399999994
No 4
>2x8r_A Glycosyl hydrolase; peptidoglycan cleavage, endo-N-acetylmuramidases, motif; 1.70A {Aspergillus fumigatus}
Probab=13.48 E-value=89 Score=20.06 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=10.3
Q ss_pred EEEEEEecc-cccee
Q psy6425 43 VRQIEVSHW-GNPKN 56 (68)
Q Consensus 43 ~R~IeVSHW-gni~v 56 (68)
.+-|.|||| |+|..
T Consensus 4 ~~GIDVS~~qg~idw 18 (210)
T 2x8r_A 4 VQGFDISNHQKSVNF 18 (210)
T ss_dssp EEEEEECTTCSCCCH
T ss_pred CeEEECCCCCCCCCH
Confidence 457999999 57653
No 5
>2wag_A Lysozyme, putative; hydrolase, GH25, lysin; 1.40A {Bacillus anthracis}
Probab=11.34 E-value=1e+02 Score=20.16 Aligned_cols=13 Identities=15% Similarity=0.659 Sum_probs=10.3
Q ss_pred EEEEEEecc-ccce
Q psy6425 43 VRQIEVSHW-GNPK 55 (68)
Q Consensus 43 ~R~IeVSHW-gni~ 55 (68)
.+-|.||+| |+|.
T Consensus 16 ~~GIDVS~~Qg~id 29 (220)
T 2wag_A 16 IKGVDVASYQGDID 29 (220)
T ss_dssp CEEEEECGGGCSCC
T ss_pred CeEEEeCCCCCCCC
Confidence 578999999 5764
No 6
>1o9a_B FNBB, fibronectin binding protein; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Streptococcus dysgalactiae}
Probab=10.93 E-value=37 Score=17.04 Aligned_cols=10 Identities=40% Similarity=1.035 Sum_probs=8.4
Q ss_pred EEEEEecCCC
Q psy6425 26 ITIHYENNSP 35 (68)
Q Consensus 26 ~~VhYe~n~P 35 (68)
+++||+|.-|
T Consensus 24 ~sihfdnewp 33 (36)
T 1o9a_B 24 LSIHFDNEWP 33 (36)
T ss_dssp CBCCCCCCCS
T ss_pred eEEeccCcCC
Confidence 8899998766
No 7
>1jfx_A 1,4-beta-N-acetylmuramidase M1; beta-alpha-barrel, cellosyl, lysozyme, hydrolase; 1.65A {Streptomyces coelicolor} SCOP: c.1.8.8
Probab=10.58 E-value=1.1e+02 Score=19.62 Aligned_cols=12 Identities=50% Similarity=1.074 Sum_probs=9.4
Q ss_pred EEEEEecc-ccce
Q psy6425 44 RQIEVSHW-GNPK 55 (68)
Q Consensus 44 R~IeVSHW-gni~ 55 (68)
+-|.|||| |+|.
T Consensus 6 ~GIDVS~~qg~id 18 (217)
T 1jfx_A 6 QGIDVSHWQGSIN 18 (217)
T ss_dssp EEEEECGGGCSCC
T ss_pred eEEEeCCCCCCCC
Confidence 56899999 5764
No 8
>2lyx_A Uncharacterized protein YQZG; PF13028, DUF3889, structural genomics, unknown function; NMR {Bacillus subtilis subsp}
Probab=9.44 E-value=36 Score=20.24 Aligned_cols=11 Identities=18% Similarity=0.474 Sum_probs=7.8
Q ss_pred Eeccccceeee
Q psy6425 48 VSHWGNPKNPD 58 (68)
Q Consensus 48 VSHWgni~veE 58 (68)
+.-||.||++|
T Consensus 12 ~aKWGrlA~~~ 22 (87)
T 2lyx_A 12 MSKWEEIAVKE 22 (87)
T ss_dssp CCSSTTHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45788888764
No 9
>2iec_A Uncharacterized protein conserved in archaea; tetramer with intra-molecular and inter-molecular disufide bonds, structural genomics, PSI-2; 2.33A {Methanopyrus kandleri} SCOP: d.316.1.1
Probab=8.78 E-value=2.4e+02 Score=17.90 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=14.6
Q ss_pred EEEEE--ecCCCceEEeEEEE
Q psy6425 26 ITIHY--ENNSPFLVVTRLVR 44 (68)
Q Consensus 26 ~~VhY--e~n~P~~~v~~L~R 44 (68)
..+.| |.+-|++.|.+.+|
T Consensus 100 ~~l~yi~el~YPLM~ve~i~~ 120 (131)
T 2iec_A 100 GKLEFIEELNYPLMWVEEIRR 120 (131)
T ss_dssp EEEEEEGGGTEEEEEEEEEEE
T ss_pred EEEEecccCCCceEEEEehhh
Confidence 55777 78899999987555
No 10
>2hev_F Tumor necrosis factor ligand superfamily member 4; cytokine, receptor-ligand complex, TNFSF, TNFRSF; HET: NAG; 2.41A {Homo sapiens} SCOP: b.22.1.1
Probab=8.77 E-value=3.9e+02 Score=17.07 Aligned_cols=37 Identities=19% Similarity=0.439 Sum_probs=20.3
Q ss_pred EEEEEecCC-CceEEeEEEEEEEEeccccceeeeEEEeE
Q psy6425 26 ITIHYENNS-PFLVVTRLVRQIEVSHWGNPKNPDNDSIE 63 (68)
Q Consensus 26 ~~VhYe~n~-P~~~v~~L~R~IeVSHWgni~veE~y~l~ 63 (68)
+.+||..+. ||....+ .|.|.----..++++|..-|.
T Consensus 69 I~l~YRk~~~p~~~L~~-~~~v~s~~Va~L~fKDkvyl~ 106 (137)
T 2hev_F 69 ISLHYQKDEEPLFQLKK-VRSVNSLMVASLTYKDKVYLN 106 (137)
T ss_dssp EEEESSTTSCCSEEEEE-EEEEEEEEEEEECTTCEEEEE
T ss_pred EEEEEecCCCchhhhcc-ceeEEEEEEEEEeeccEEEEE
Confidence 789998775 4553333 333322222357777766553
Done!