Query psy6425
Match_columns 68
No_of_seqs 101 out of 194
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 17:41:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6425.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6425hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g31a_ b.35.1.1 (A:) GP31 co- 24.6 12 0.00087 21.8 1.0 11 46-56 93-104 (107)
2 d1pcfa_ d.18.1.1 (A:) Transcri 15.0 66 0.0048 16.6 2.6 19 43-61 8-29 (66)
3 d1jfxa_ c.1.8.8 (A:) Streptomy 13.8 36 0.0026 20.3 1.5 12 44-55 6-18 (217)
4 d1lo7a_ d.38.1.1 (A:) 4-hydrox 13.6 96 0.007 16.2 4.9 37 28-64 63-99 (140)
5 d2j8ga2 c.1.8.8 (A:2-190) N-te 11.0 41 0.003 19.4 1.0 11 45-55 7-18 (189)
6 d1pfoa_ f.9.1.1 (A:) Perfringo 10.5 28 0.002 24.8 0.1 13 43-55 450-463 (471)
7 d1mxaa2 d.130.1.1 (A:108-231) 10.3 38 0.0027 19.5 0.6 15 23-37 58-72 (124)
8 d1s5ua_ d.38.1.1 (A:) Hypothet 9.4 1.4E+02 0.01 15.4 4.6 39 27-65 58-96 (129)
9 d1tc5a_ c.110.1.1 (A:) probabl 9.3 1.1E+02 0.0079 18.7 2.7 30 5-41 157-186 (187)
10 d1twla_ b.40.5.1 (A:) Inorgani 9.1 85 0.0062 18.7 2.0 12 14-25 2-13 (173)
No 1
>d1g31a_ b.35.1.1 (A:) GP31 co-chaperonin {Bacteriophage T4 [TaxId: 10665]}
Probab=24.59 E-value=12 Score=21.85 Aligned_cols=11 Identities=18% Similarity=0.081 Sum_probs=8.7
Q ss_pred EEEe-cccccee
Q psy6425 46 IEVS-HWGNPKN 56 (68)
Q Consensus 46 IeVS-HWgni~v 56 (68)
-||+ ||-||++
T Consensus 93 ~~vt~HyK~I~~ 104 (107)
T d1g31a_ 93 KFVTCHYKAIPC 104 (107)
T ss_dssp CEEEEEGGGCCE
T ss_pred heeehhhcccee
Confidence 4888 9988765
No 2
>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.97 E-value=66 Score=16.58 Aligned_cols=19 Identities=16% Similarity=0.136 Sum_probs=15.4
Q ss_pred EEEEEEecc-c--cceeeeEEE
Q psy6425 43 VRQIEVSHW-G--NPKNPDNDS 61 (68)
Q Consensus 43 ~R~IeVSHW-g--ni~veE~y~ 61 (68)
.|-|.||-+ | -|.|-|+|.
T Consensus 8 ~rrvtV~~FkG~~~vdIReyY~ 29 (66)
T d1pcfa_ 8 MRYVSVRDFKGKVLIDIREYWM 29 (66)
T ss_dssp TEEEEEEEETTEEEEEEEEEEE
T ss_pred cEEEEEEEECCcEEEEEEEEEE
Confidence 367889999 6 499999993
No 3
>d1jfxa_ c.1.8.8 (A:) Streptomyces lysozyme {Streptomyces coelicolor, "mueller" dsm3030 [TaxId: 1902]}
Probab=13.82 E-value=36 Score=20.27 Aligned_cols=12 Identities=50% Similarity=1.074 Sum_probs=9.0
Q ss_pred EEEEEecc-ccce
Q psy6425 44 RQIEVSHW-GNPK 55 (68)
Q Consensus 44 R~IeVSHW-gni~ 55 (68)
+-|.|||| |+|.
T Consensus 6 ~GIDVS~~qg~id 18 (217)
T d1jfxa_ 6 QGIDVSHWQGSIN 18 (217)
T ss_dssp EEEEECGGGCSCC
T ss_pred EEEEeCCcCCCCC
Confidence 46899999 4664
No 4
>d1lo7a_ d.38.1.1 (A:) 4-hydroxybenzoyl-CoA thioesterase {Pseudomonas sp., CBS-3 [TaxId: 306]}
Probab=13.58 E-value=96 Score=16.20 Aligned_cols=37 Identities=8% Similarity=0.011 Sum_probs=27.2
Q ss_pred EEEecCCCceEEeEEEEEEEEeccccceeeeEEEeEE
Q psy6425 28 IHYENNSPFLVVTRLVRQIEVSHWGNPKNPDNDSIES 64 (68)
Q Consensus 28 VhYe~n~P~~~v~~L~R~IeVSHWgni~veE~y~l~n 64 (68)
++=+..+|+..-..+.=..+|++||+-++.=.|++.+
T Consensus 63 ~~~~y~~~~~~~d~l~v~~~v~~~g~~s~~~~~~i~~ 99 (140)
T d1lo7a_ 63 CNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR 99 (140)
T ss_dssp EEEEECSCCCTTCEEEEEEEEEEECSSEEEEEEEEEE
T ss_pred EEEeEEcccCCCCEEEEEEEEEEcCCEEEEEEEEEEE
Confidence 3445556666678899999999999777776677664
No 5
>d2j8ga2 c.1.8.8 (A:2-190) N-terminal domain of endolysin {Bacteriophage cp-1 [TaxId: 10747]}
Probab=10.96 E-value=41 Score=19.38 Aligned_cols=11 Identities=27% Similarity=0.311 Sum_probs=7.9
Q ss_pred EEEEecc-ccce
Q psy6425 45 QIEVSHW-GNPK 55 (68)
Q Consensus 45 ~IeVSHW-gni~ 55 (68)
-|.||+| |++.
T Consensus 7 gIDVS~~qg~~d 18 (189)
T d2j8ga2 7 FVDVSSHNGYDI 18 (189)
T ss_dssp EEEECGGGCSCC
T ss_pred EEEecCCCCccC
Confidence 4889999 5654
No 6
>d1pfoa_ f.9.1.1 (A:) Perfringolysin {Clostridium perfringens [TaxId: 1502]}
Probab=10.45 E-value=28 Score=24.83 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=10.2
Q ss_pred EEEEEEeccc-cce
Q psy6425 43 VRQIEVSHWG-NPK 55 (68)
Q Consensus 43 ~R~IeVSHWg-ni~ 55 (68)
.+.+.|++|| +|.
T Consensus 450 ~~~~~~~~~gttl~ 463 (471)
T d1pfoa_ 450 TNNINVSIWGTTLY 463 (471)
T ss_dssp CSEEEEEEEECSSS
T ss_pred cCceEEEecCceec
Confidence 5688899999 554
No 7
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]}
Probab=10.27 E-value=38 Score=19.47 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=12.4
Q ss_pred cccEEEEEecCCCce
Q psy6425 23 KANITIHYENNSPFL 37 (68)
Q Consensus 23 ~~p~~VhYe~n~P~~ 37 (68)
...++|.|+++.|.-
T Consensus 58 KsQVTv~Y~~~~P~~ 72 (124)
T d1mxaa2 58 KSQVTFQYDDGKIVG 72 (124)
T ss_dssp EEEEEEEESSSCEEE
T ss_pred CEEEEEEeeCCCCEE
Confidence 456999999999874
No 8
>d1s5ua_ d.38.1.1 (A:) Hypothetical protein YbgC {Escherichia coli [TaxId: 562]}
Probab=9.35 E-value=1.4e+02 Score=15.43 Aligned_cols=39 Identities=15% Similarity=0.064 Sum_probs=29.7
Q ss_pred EEEEecCCCceEEeEEEEEEEEeccccceeeeEEEeEEc
Q psy6425 27 TIHYENNSPFLVVTRLVRQIEVSHWGNPKNPDNDSIESG 65 (68)
Q Consensus 27 ~VhYe~n~P~~~v~~L~R~IeVSHWgni~veE~y~l~n~ 65 (68)
..+-+..+|+..-..|+-..++..+|+.++.=.|++.|.
T Consensus 58 ~~~~~y~~~~~~~d~l~v~~~i~~~~~~s~~~~~~i~~~ 96 (129)
T d1s5ua_ 58 KMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNA 96 (129)
T ss_dssp EEEEEECSCCCTTCEEEEEEEEEEECSSEEEEEEEEECT
T ss_pred EEeeeeeccccCCceeeEEEEEEEcCCeEEEEEEEEEcC
Confidence 455556677777889999999999998777777777653
No 9
>d1tc5a_ c.110.1.1 (A:) probable eukaryotic D-amino acid tRNA deacylase {Leishmania major [TaxId: 5664]}
Probab=9.32 E-value=1.1e+02 Score=18.75 Aligned_cols=30 Identities=13% Similarity=0.386 Sum_probs=22.7
Q ss_pred eecCeEEEcccCcCCCCCcccEEEEEecCCCceEEeE
Q psy6425 5 QVEQTITYGPYENVPPYTKANITIHYENNSPFLVVTR 41 (68)
Q Consensus 5 ~~g~~i~yGP~~~v~p~t~~p~~VhYe~n~P~~~v~~ 41 (68)
..+..+.-|-|. .-|.|..+|+.|+..+-.
T Consensus 157 ~~~~~V~~G~FG-------a~M~V~l~NdGPvT~~ld 186 (187)
T d1tc5a_ 157 KYNSRVISGTFG-------NRQGLRFESEGPFTHMFD 186 (187)
T ss_dssp CCCSCEEECCTT-------SCCCEEEEESCCCCEEEE
T ss_pred ccCceeeECCCC-------CCeEEEEEeCCCEEEEEe
Confidence 345668888885 568899999999977643
No 10
>d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus furiosus [TaxId: 2261]}
Probab=9.06 E-value=85 Score=18.70 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=8.0
Q ss_pred ccCcCCCCCccc
Q psy6425 14 PYENVPPYTKAN 25 (68)
Q Consensus 14 P~~~v~p~t~~p 25 (68)
||.|++|+...|
T Consensus 2 pwhdi~~~~~~p 13 (173)
T d1twla_ 2 PFHDLEPGPDVP 13 (173)
T ss_dssp HHHHSCSCSBTT
T ss_pred CccCCCCCCCCC
Confidence 677777766543
Done!