RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy6425
         (68 letters)



>gnl|CDD|218165 pfam04597, Ribophorin_I, Ribophorin I.  Ribophorin I is an
           essential subunit of oligosaccharyltransferase (OST),
           which is also known as
           Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase, (EC:2.4.1.119). OST catalyzes the
           transfer of an oligosaccharide from dolichol
           pyrophosphate to selected asparagine residues of nascent
           polypeptides as they are translocated into the lumen of
           the rough endoplasmic reticulum. Ribophorin I and OST48
           are though to be responsible for OST catalytic activity.
           Both yeast and mammalian proteins are glycosylated but
           the sites are not conserved. Glycosylation may
           contribute towards general solubility but is unlikely to
           be involved in a specific biochemical function Most
           family members are predicted to have a transmembrane
           helix at the C terminus of this region.
          Length = 429

 Score = 81.9 bits (203), Expect = 2e-20
 Identities = 32/52 (61%), Positives = 38/52 (73%)

Query: 2   PTTQVEQTITYGPYENVPPYTKANITIHYENNSPFLVVTRLVRQIEVSHWGN 53
           P T+   T+TYGPYENVP ++   IT+HYENN P + VT L R IEVSHWGN
Sbjct: 158 PPTRQGNTLTYGPYENVPAFSLEPITVHYENNKPLITVTNLERDIEVSHWGN 209


>gnl|CDD|214882 smart00882, CoA_trans, Coenzyme A transferase.  Coenzyme A (CoA)
          transferases belong to an evolutionary conserved family
          of enzymes catalyzing the reversible transfer of CoA
          from one carboxylic acid to another. They have been
          identified in many prokaryotes and in mammalian
          tissues. The bacterial enzymes are heterodimer of two
          subunits (A and B) of about 25 Kd each while eukaryotic
          SCOT consist of a single chain which is colinear with
          the two bacterial subunits.
          Length = 212

 Score = 28.7 bits (65), Expect = 0.16
 Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 3/36 (8%)

Query: 25 NITIHYENNSP---FLVVTRLVRQIEVSHWGNPKNP 57
          ++T+  EN       L     V++I   H G     
Sbjct: 40 DLTLISENGGLGLGLLAGEGDVKKIIAGHVGLTPLL 75


>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic
          pyrophosphatase; Provisional.
          Length = 546

 Score = 24.8 bits (55), Expect = 4.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)

Query: 55 KNPDNDSIES 64
          KNPD DSI S
Sbjct: 11 KNPDTDSICS 20


>gnl|CDD|214331 CHL00002, matK, maturase K.
          Length = 504

 Score = 24.1 bits (53), Expect = 6.2
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 24/67 (35%)

Query: 14 PYENVPPYTKANITIHYENNSPFLVVTRLVRQ--------IEVSH------WGNPKNPDN 59
            EN            Y+N    L+V RL+ +        I V+        G+ KN  +
Sbjct: 42 LLENS----------GYDNKYSLLIVKRLITRMYQQNHLIISVNDSNQNPFLGHNKNFYS 91

Query: 60 DSIESGF 66
            I  GF
Sbjct: 92 QMISEGF 98


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.314    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0784    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,407,989
Number of extensions: 239708
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 6
Length of query: 68
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 29
Effective length of database: 9,207,796
Effective search space: 267026084
Effective search space used: 267026084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.1 bits)