RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6425
         (68 letters)



>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
           genomics of infec diseases, csgid, metal binding,
           transferase; 1.70A {Bacteroides thetaiotaomicron}
          Length = 199

 Score = 26.1 bits (58), Expect = 0.73
 Identities = 5/29 (17%), Positives = 13/29 (44%)

Query: 19  PPYTKANITIHYENNSPFLVVTRLVRQIE 47
           P YT+A    + +       +   V++++
Sbjct: 166 PFYTQAQYIFNADELEDRWQIESSVQRLQ 194


>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
           cerevisiae}
          Length = 231

 Score = 25.1 bits (54), Expect = 1.6
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 17/58 (29%)

Query: 10  ITYGPYEN----VPPYTKANITIHYENNSPFLVVTRLVRQIE--VSHWGNPKNPDNDS 61
           I Y P+EN    +P        I +  N+        V ++    + W      D  S
Sbjct: 166 IAYEPFENIAIELP-----PNEILFSENNDMDNNNDGVDELNKKCTFW------DAIS 212


>1fsg_A HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase;
           glycosyltransferase, purine salvage; HET: PRP 9DG; 1.05A
           {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1qk3_A* 1qk4_A*
           1qk5_A* 1dbr_A
          Length = 233

 Score = 24.9 bits (55), Expect = 1.7
 Identities = 4/54 (7%), Positives = 13/54 (24%), Gaps = 9/54 (16%)

Query: 24  ANITIHYENNSPFLV---------VTRLVRQIEVSHWGNPKNPDNDSIESGFIR 68
            +I   Y      ++            L+  +      + +          ++R
Sbjct: 64  YDIHRTYFGEELHIICILKGSRGFFNLLIDYLATIQKYSGRESSVPPFFEHYVR 117


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 24.0 bits (51), Expect = 4.7
 Identities = 5/31 (16%), Positives = 10/31 (32%)

Query: 28  IHYENNSPFLVVTRLVRQIEVSHWGNPKNPD 58
           I  E   P ++    + Q +  +  N     
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.314    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,032,781
Number of extensions: 46534
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 11
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.9 bits)