RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6425
         (68 letters)



>d1eu3a2 d.15.6.1 (A:97-209) Streptococcal superantigen Smez-2
          {Streptococcus pyogenes [TaxId: 1314]}
          Length = 113

 Score = 24.4 bits (53), Expect = 0.86
 Identities = 5/23 (21%), Positives = 9/23 (39%)

Query: 12 YGPYENVPPYTKANITIHYENNS 34
          +  Y +   Y    +  H  +NS
Sbjct: 49 HQLYSSGSSYKSGRLVFHTNDNS 71


>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 467

 Score = 24.7 bits (52), Expect = 0.98
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 36  FLVVTRLVRQIEVSHWGNPKNPDNDSIESGFIR 68
           FL +T +++   +    +PKN D   + +GF  
Sbjct: 421 FLFLTSILQNFNLKSLVDPKNLDTTPVVNGFAS 453


>d1ty0a2 d.15.6.1 (A:104-211) Streptococcal pyrogenic exotoxin
          Spe-J {Streptococcus pyogenes [TaxId: 1314]}
          Length = 108

 Score = 23.5 bits (51), Expect = 2.2
 Identities = 7/25 (28%), Positives = 9/25 (36%)

Query: 12 YGPYENVPPYTKANITIHYENNSPF 36
          Y  Y+   PY K  + I    N   
Sbjct: 43 YKIYDPNSPYIKGQLEIAINGNKHE 67


>d1enfa2 d.15.6.1 (A:102-213) Staphylococcal enterotoxin H, SEH
          {Staphylococcus aureus [TaxId: 1280]}
          Length = 112

 Score = 23.2 bits (50), Expect = 2.3
 Identities = 4/25 (16%), Positives = 7/25 (28%)

Query: 12 YGPYENVPPYTKANITIHYENNSPF 36
          Y  Y      +K  I    +    +
Sbjct: 49 YKIYYKDSEISKGLIEFDMKTPRDY 73


>d1yfoa_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 288

 Score = 23.2 bits (49), Expect = 3.4
 Identities = 9/60 (15%), Positives = 16/60 (26%)

Query: 2   PTTQVEQTITYGPYENVPPYTKANITIHYENNSPFLVVTRLVRQIEVSHWGNPKNPDNDS 61
             T     ++      +  YT     I    +       RL+ Q   + W +   P    
Sbjct: 143 CWTYGNVRVSVEDVTVLVDYTVRKFCIQQVGDVTNRKPQRLITQFHFTSWPDFGVPFTPI 202


>d1an8a2 d.15.6.1 (A:96-208) Streptococcal superantigen Spe-C
          {Streptococcus pyogenes [TaxId: 1314]}
          Length = 113

 Score = 22.8 bits (49), Expect = 3.4
 Identities = 6/25 (24%), Positives = 9/25 (36%)

Query: 12 YGPYENVPPYTKANITIHYENNSPF 36
          Y  Y+   PY    I I  ++    
Sbjct: 49 YKIYDATSPYVSGRIEIGTKDGKHE 73


>d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
          strains [TaxId: 11320]}
          Length = 317

 Score = 22.4 bits (48), Expect = 5.4
 Identities = 6/22 (27%), Positives = 9/22 (40%)

Query: 29 HYENNSPFLVVTRLVRQIEVSH 50
          +   NS   V T     + V+H
Sbjct: 7  YQSTNSTETVDTLTETNVPVTH 28


>d1jsma_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
          strains [TaxId: 11320]}
          Length = 321

 Score = 22.4 bits (48), Expect = 5.4
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 29 HYENNSPFLVVTRLVRQIEVSH 50
          ++ NNS   V T + + + V+H
Sbjct: 7  YHANNSTEQVDTIMEKNVTVTH 28


>d1rvxa_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
          strains [TaxId: 11320]}
          Length = 323

 Score = 22.0 bits (47), Expect = 7.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 29 HYENNSPFLVVTRLVRQIEVSH 50
          ++ NNS   V T L + + V+H
Sbjct: 7  YHANNSTDTVDTVLEKNVTVTH 28


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 262,201
Number of extensions: 9475
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 12
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)