BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6426
         (74 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9VGP6|PFD3_DROME Probable prefoldin subunit 3 OS=Drosophila melanogaster GN=CG6719
          PE=3 SV=2
          Length = 185

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 39/48 (81%)

Query: 11 KSYGGIPEAVFVDDVDKYMSLPENDRIEVVLKKLDEEHNKYKFMEYSL 58
          K++ GIPEAVF++++D +MS PEN+  E VL++LDE+H KY+FM  +L
Sbjct: 9  KTFAGIPEAVFLEEIDTFMSQPENENCEKVLQRLDEQHGKYRFMACNL 56


>sp|Q2TBX2|PFD3_BOVIN Prefoldin subunit 3 OS=Bos taurus GN=VBP1 PE=2 SV=1
          Length = 197

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 37/45 (82%)

Query: 15 GIPEAVFVDDVDKYMSLPENDRIEVVLKKLDEEHNKYKFMEYSLS 59
          GIPEAVFV+DVD +M  P N+  ++VLKKLDE++ KYKFME +L+
Sbjct: 24 GIPEAVFVEDVDSFMKQPGNETADIVLKKLDEQYQKYKFMELNLA 68


>sp|P61759|PFD3_MOUSE Prefoldin subunit 3 OS=Mus musculus GN=Vbp1 PE=2 SV=2
          Length = 196

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 36/45 (80%)

Query: 15 GIPEAVFVDDVDKYMSLPENDRIEVVLKKLDEEHNKYKFMEYSLS 59
          GIPEAVFV+DVD +M  P N+  + VLKKLDE++ KYKFME +L+
Sbjct: 23 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLA 67


>sp|P61758|PFD3_HUMAN Prefoldin subunit 3 OS=Homo sapiens GN=VBP1 PE=1 SV=3
          Length = 197

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 36/45 (80%)

Query: 15 GIPEAVFVDDVDKYMSLPENDRIEVVLKKLDEEHNKYKFMEYSLS 59
          GIPEAVFV+DVD +M  P N+  + VLKKLDE++ KYKFME +L+
Sbjct: 24 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLA 68


>sp|Q5RCG9|PFD3_PONAB Prefoldin subunit 3 OS=Pongo abelii GN=VBP1 PE=2 SV=1
          Length = 197

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 36/45 (80%)

Query: 15 GIPEAVFVDDVDKYMSLPENDRIEVVLKKLDEEHNKYKFMEYSLS 59
          GIPEAVFV+DVD +M  P N+  + VLKKLDE++ KYKFME +L+
Sbjct: 24 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLA 68


>sp|P48363|PFD3_YEAST Prefoldin subunit 3 OS=Saccharomyces cerevisiae (strain ATCC
          204508 / S288c) GN=PAC10 PE=1 SV=1
          Length = 199

 Score = 34.7 bits (78), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 11 KSYGGIPEAVFVDDVDKYMSLPENDRIEVVLKKLDEEHNKYKFMEYS 57
          K+  GIP+A F+++V++ +  P +   E+   K  E  +KYKFM+ S
Sbjct: 10 KNARGIPQAPFIENVNEIIKDPSD--FELCFNKFQERLSKYKFMQES 54


>sp|Q54LS2|PFD3_DICDI Probable prefoldin subunit 3 OS=Dictyostelium discoideum GN=pfdn3
          PE=3 SV=1
          Length = 195

 Score = 33.9 bits (76), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 7  DKKVKSYGGIPEAVFVDDVDKYMSLPENDRIEVVLKKLDEEHNKYKFMEYSLS 59
          ++ +K+   IP   F+ +V++++   ++  +E V K+L E + KYKF E  LS
Sbjct: 15 EQDIKTATNIPMVTFISNVEEFV---KDKDVENVFKQLQEAYQKYKFFESKLS 64


>sp|Q8D2L6|SYY_WIGBR Tyrosine--tRNA ligase OS=Wigglesworthia glossinidia brevipalpis
           GN=tyrS PE=3 SV=2
          Length = 426

 Score = 30.4 bits (67), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 21  FVDDVDKYMSLPENDRIEVVLKKLDEEHNKYKFMEYSLSLL 61
           F+ D+ +++S+ +  R E+V KKL +E+    FME+S SLL
Sbjct: 136 FLRDIGRFISINKILRKEIVKKKL-KENQHISFMEFSYSLL 175


>sp|B3CLB3|LON_WOLPP Lon protease OS=Wolbachia pipientis subsp. Culex pipiens (strain
           wPip) GN=lon PE=3 SV=1
          Length = 818

 Score = 29.3 bits (64), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 21  FVDDVDKYMSLPENDRIEVVLKKLDEEHNKY---KFMEYSLSLLGVLFSLVGSASAL 74
            +D++DK  S    D    +L+ LD EHNK+    ++E    L  V+F  V +A++L
Sbjct: 435 LLDEIDKMGSDSRGDPASALLEVLDTEHNKHFTDHYLEVEFDLSSVMF--VATANSL 489


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.134    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,290,890
Number of Sequences: 539616
Number of extensions: 1008278
Number of successful extensions: 3075
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3065
Number of HSP's gapped (non-prelim): 16
length of query: 74
length of database: 191,569,459
effective HSP length: 45
effective length of query: 29
effective length of database: 167,286,739
effective search space: 4851315431
effective search space used: 4851315431
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)