Query psy6426
Match_columns 74
No_of_seqs 101 out of 175
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 17:41:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6426.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6426hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxk_C Protein (prefoldin); ar 74.5 2.8 9.7E-05 26.3 3.1 21 41-61 3-23 (133)
2 2yy0_A C-MYC-binding protein; 64.3 10 0.00034 21.2 3.7 38 22-59 4-43 (53)
3 3qf7_D MRE11; ABC-ATPase, ATPa 45.1 11 0.00038 21.0 1.6 37 16-53 4-40 (50)
4 3kmi_A Putative membrane prote 40.3 8.4 0.00029 25.9 0.8 41 13-55 103-143 (177)
5 2zdi_C Prefoldin subunit alpha 38.9 12 0.0004 24.1 1.2 22 40-61 10-31 (151)
6 3ubt_Y Modification methylase 37.6 12 0.00041 25.8 1.3 30 17-46 103-132 (331)
7 2jnu_A RGS14, regulator of G-p 37.2 26 0.0009 22.0 2.7 32 19-51 41-72 (154)
8 2ebz_A RGS12, regulator of G-p 36.8 27 0.00091 22.0 2.7 32 19-51 45-76 (155)
9 1p68_A De novo designed protei 36.6 19 0.00065 22.5 1.9 29 21-49 40-69 (102)
10 3b0c_W CENP-W, centromere prot 32.6 27 0.00092 20.1 2.1 18 35-52 58-75 (76)
11 2dae_A KIAA0733 protein; mitog 30.9 22 0.00076 21.5 1.5 36 16-56 24-59 (75)
12 1bm4_A Protein (moloney murine 28.3 18 0.00062 18.6 0.7 24 27-51 6-29 (32)
13 3kcn_A Adenylate cyclase homol 27.6 43 0.0015 19.5 2.4 35 25-61 100-134 (151)
14 4fyl_A Ribosome hibernation pr 26.3 50 0.0017 19.5 2.5 17 36-52 73-89 (95)
15 1wgx_A KIAA1903 protein; MYB D 26.0 31 0.001 20.4 1.5 28 20-50 32-59 (73)
16 1mp1_A Ser/Arg-related nuclear 25.8 17 0.0006 23.1 0.4 15 9-24 89-103 (111)
17 2vt8_A HPI31, PI31, proteasome 25.1 31 0.0011 22.2 1.6 29 24-52 109-137 (153)
18 3shg_B VBHA; ampylation, adeny 24.3 51 0.0017 19.2 2.2 32 15-48 26-57 (61)
19 3c7l_A Regulator of G-protein 24.1 65 0.0022 19.6 2.9 30 19-51 48-77 (137)
20 3a09_A ALGQ1; sugar binding pr 24.0 18 0.00063 25.4 0.3 15 37-51 475-489 (490)
21 3gzf_A Replicase polyprotein 1 22.5 25 0.00084 22.2 0.6 34 19-53 18-51 (96)
22 3v26_X ORF3, ORF95, probable s 22.4 64 0.0022 19.3 2.5 19 35-53 72-90 (101)
23 2dlv_A RGS18, regulator of G-p 22.2 61 0.0021 19.6 2.5 30 19-51 45-74 (140)
24 3f9u_A Putative exported cytoc 21.8 70 0.0024 19.4 2.7 41 12-52 127-169 (172)
25 3tqm_A Ribosome-associated fac 21.8 68 0.0023 18.7 2.5 17 36-52 73-89 (96)
26 3qwl_A TBC1 domain family memb 20.8 94 0.0032 22.0 3.5 35 18-52 253-287 (294)
27 2ihb_B Regulator of G-protein 20.7 69 0.0024 19.9 2.5 30 19-51 61-90 (153)
28 3l4q_C Phosphatidylinositol 3- 20.7 62 0.0021 22.0 2.4 18 35-52 10-27 (170)
29 3q4o_A Uncharacterized protein 20.5 1.2E+02 0.0043 20.9 4.0 44 22-65 128-172 (196)
30 1x4o_A Splicing factor 4; stru 20.1 23 0.00077 20.8 0.1 35 19-54 18-52 (78)
No 1
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=74.51 E-value=2.8 Score=26.26 Aligned_cols=21 Identities=14% Similarity=0.078 Sum_probs=18.3
Q ss_pred HHHHHHHHhhHHHHHHHhhhh
Q psy6426 41 LKKLDEEHNKYKFMEYSLSLL 61 (74)
Q Consensus 41 l~~lqE~~~KYKfME~~l~~~ 61 (74)
++++++++++|++++.++.++
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~ 23 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQ 23 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999988765
No 2
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=64.30 E-value=10 Score=21.15 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=22.5
Q ss_pred cccHHHhhc--CCCCCcHHHHHHHHHHHHhhHHHHHHHhh
Q psy6426 22 VDDVDKYMS--LPENDRIEVVLKKLDEEHNKYKFMEYSLS 59 (74)
Q Consensus 22 IedVe~fm~--~~~~~~~e~vl~~lqE~~~KYKfME~~l~ 59 (74)
+|-|..+++ .|...++|.+.+..+++-+||.-+...+.
T Consensus 4 lefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 4 LDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777 66557999999999999999986665543
No 3
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=45.13 E-value=11 Score=21.01 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=28.4
Q ss_pred CCcccccccHHHhhcCCCCCcHHHHHHHHHHHHhhHHH
Q psy6426 16 IPEAVFVDDVDKYMSLPENDRIEVVLKKLDEEHNKYKF 53 (74)
Q Consensus 16 IP~A~FIedVe~fm~~~~~~~~e~vl~~lqE~~~KYKf 53 (74)
|-+-.|.|=..+|+++.. .+-|.+++.|+|++..-|-
T Consensus 4 ~~kld~felfkey~k~r~-~~he~l~k~~~ell~evkk 40 (50)
T 3qf7_D 4 LDKLDYFELFKEYLKKRE-ENHEKLLKILDELLDEVKK 40 (50)
T ss_dssp ---CCHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHH
Confidence 556678888999998764 6899999999999876554
No 4
>3kmi_A Putative membrane protein COG4129; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.96A {Clostridium difficile}
Probab=40.28 E-value=8.4 Score=25.88 Aligned_cols=41 Identities=10% Similarity=-0.011 Sum_probs=33.9
Q ss_pred CCCCCcccccccHHHhhcCCCCCcHHHHHHHHHHHHhhHHHHH
Q psy6426 13 YGGIPEAVFVDDVDKYMSLPENDRIEVVLKKLDEEHNKYKFME 55 (74)
Q Consensus 13 ~rgIP~A~FIedVe~fm~~~~~~~~e~vl~~lqE~~~KYKfME 55 (74)
+.+.+-|.|++++..-+... +++...+..+.++...||-|+
T Consensus 103 ~q~~~iA~~~~~~a~~~~e~--n~a~~ll~~L~~l~~~fr~~~ 143 (177)
T 3kmi_A 103 PQAHILSAFIHKIGYTEFEA--ETGNLLLEELKRLMISMKNQP 143 (177)
T ss_dssp HHHHHHHHHHHHHHHCCCCT--THHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHHHHHhcCC
Confidence 34566788999999999753 589999999999999999765
No 5
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=38.86 E-value=12 Score=24.05 Aligned_cols=22 Identities=23% Similarity=0.049 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhHHHHHHHhhhh
Q psy6426 40 VLKKLDEEHNKYKFMEYSLSLL 61 (74)
Q Consensus 40 vl~~lqE~~~KYKfME~~l~~~ 61 (74)
-++.+.+.+++|++++.++.++
T Consensus 10 ~l~ql~~~~qql~~~~~~l~~~ 31 (151)
T 2zdi_C 10 ELEKLAYEYQVLQAQAQILAQN 31 (151)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888889998888777654
No 6
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=37.64 E-value=12 Score=25.79 Aligned_cols=30 Identities=17% Similarity=0.395 Sum_probs=21.5
Q ss_pred CcccccccHHHhhcCCCCCcHHHHHHHHHH
Q psy6426 17 PEAVFVDDVDKYMSLPENDRIEVVLKKLDE 46 (74)
Q Consensus 17 P~A~FIedVe~fm~~~~~~~~e~vl~~lqE 46 (74)
|++.++|||..++........+.+++.|.+
T Consensus 103 Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~ 132 (331)
T 3ubt_Y 103 PIFFLAENVKGMMAQRHNKAVQEFIQEFDN 132 (331)
T ss_dssp CSEEEEEECCGGGGCTTSHHHHHHHHHHHH
T ss_pred CeEEEeeeecccccccccchhhhhhhhhcc
Confidence 899999999999975433455556655554
No 7
>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein signalling domain, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=37.17 E-value=26 Score=21.97 Aligned_cols=32 Identities=6% Similarity=0.308 Sum_probs=24.0
Q ss_pred ccccccHHHhhcCCCCCcHHHHHHHHHHHHhhH
Q psy6426 19 AVFVDDVDKYMSLPENDRIEVVLKKLDEEHNKY 51 (74)
Q Consensus 19 A~FIedVe~fm~~~~~~~~e~vl~~lqE~~~KY 51 (74)
-.|..+|+.|-...+ .+.+......+..|.+|
T Consensus 41 l~Fw~~ve~~k~~~~-~~~~~~~~~a~~Iy~~y 72 (154)
T 2jnu_A 41 VTFWKACERFQQIPA-SDTQQLAQEARNIYQEF 72 (154)
T ss_dssp HHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccc-ccHHHHHHHHHHHHHHH
Confidence 468888888887542 45667778888888888
No 8
>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.78 E-value=27 Score=21.95 Aligned_cols=32 Identities=13% Similarity=0.260 Sum_probs=22.6
Q ss_pred ccccccHHHhhcCCCCCcHHHHHHHHHHHHhhH
Q psy6426 19 AVFVDDVDKYMSLPENDRIEVVLKKLDEEHNKY 51 (74)
Q Consensus 19 A~FIedVe~fm~~~~~~~~e~vl~~lqE~~~KY 51 (74)
-.|..+|+.|-..+. .+.+.+....+..|.+|
T Consensus 45 l~Fw~~ve~yk~~~~-~~~~~~~~~a~~Iy~~y 76 (155)
T 2ebz_A 45 ILFWQACEYFNHVPA-HDKKELSYRAREIFSKF 76 (155)
T ss_dssp HHHHHHHHHHHHSCS-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccc-ccHHHHHHHHHHHHHHH
Confidence 357788888886542 35566777788888777
No 9
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Probab=36.61 E-value=19 Score=22.45 Aligned_cols=29 Identities=10% Similarity=0.404 Sum_probs=19.8
Q ss_pred ccccHHHhhcCCC-CCcHHHHHHHHHHHHh
Q psy6426 21 FVDDVDKYMSLPE-NDRIEVVLKKLDEEHN 49 (74)
Q Consensus 21 FIedVe~fm~~~~-~~~~e~vl~~lqE~~~ 49 (74)
.|||+-+||...| ....++.++.||..+.
T Consensus 40 viedihdfmqgggsggklqemmkefqqvld 69 (102)
T 1p68_A 40 VIEDIHDFMQGGGSGGKLQEMMKEFQQVLD 69 (102)
T ss_dssp HHHHHHTTTTTSSTTTHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 5899999997544 2456666777766553
No 10
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=32.59 E-value=27 Score=20.08 Aligned_cols=18 Identities=11% Similarity=-0.044 Sum_probs=15.3
Q ss_pred CcHHHHHHHHHHHHhhHH
Q psy6426 35 DRIEVVLKKLDEEHNKYK 52 (74)
Q Consensus 35 ~~~e~vl~~lqE~~~KYK 52 (74)
-.++.++..+++++.|||
T Consensus 58 I~~~dI~~A~~~ll~k~~ 75 (76)
T 3b0c_W 58 IKPEHTIAAAKVILKKSR 75 (76)
T ss_dssp BCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 467888899999999986
No 11
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.88 E-value=22 Score=21.50 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=29.0
Q ss_pred CCcccccccHHHhhcCCCCCcHHHHHHHHHHHHhhHHHHHH
Q psy6426 16 IPEAVFVDDVDKYMSLPENDRIEVVLKKLDEEHNKYKFMEY 56 (74)
Q Consensus 16 IP~A~FIedVe~fm~~~~~~~~e~vl~~lqE~~~KYKfME~ 56 (74)
||.+. |.++|.+. +.+.+.+.+.|+.-..||-|+|-
T Consensus 24 vPd~V----Vsqc~~qN-~~Nl~aC~~~L~qES~kYLY~e~ 59 (75)
T 2dae_A 24 VPEVV----VSRCMLQN-NNNLDACCAVLSQESTRYLYGEG 59 (75)
T ss_dssp SCHHH----HHHHHTTT-TSCSHHHHHHHHHHHHHHTTTCC
T ss_pred CcHHH----HHHHHHHh-ccCHHHHHHHHHHhcccceeccc
Confidence 55554 67788765 36899999999999999999984
No 12
>1bm4_A Protein (moloney murine leukemia virus capsid); moloney murine leukemia virus capsid protein, momlv, MU-MLV, MHR, major homology region; NMR {Synthetic} SCOP: j.47.1.1
Probab=28.28 E-value=18 Score=18.63 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=17.7
Q ss_pred HhhcCCCCCcHHHHHHHHHHHHhhH
Q psy6426 27 KYMSLPENDRIEVVLKKLDEEHNKY 51 (74)
Q Consensus 27 ~fm~~~~~~~~e~vl~~lqE~~~KY 51 (74)
+.+..+ ++++-.-+++|.|.|..|
T Consensus 6 eV~Qg~-~EsPs~FlerL~eayR~y 29 (32)
T 1bm4_A 6 GITQGP-NESPSAFLERLKEAYRRY 29 (32)
T ss_dssp TTTTTG-GGHHHHHHHHHHHHHHHT
T ss_pred HHHhCC-CCChHHHHHHHHHHHHhc
Confidence 444444 356778899999999988
No 13
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=27.57 E-value=43 Score=19.49 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=26.0
Q ss_pred HHHhhcCCCCCcHHHHHHHHHHHHhhHHHHHHHhhhh
Q psy6426 25 VDKYMSLPENDRIEVVLKKLDEEHNKYKFMEYSLSLL 61 (74)
Q Consensus 25 Ve~fm~~~~~~~~e~vl~~lqE~~~KYKfME~~l~~~ 61 (74)
+..|+.+| -+.+.+...++..+++++.....-...
T Consensus 100 ~~~~l~KP--~~~~~L~~~i~~~l~~~~~~~~~~~~~ 134 (151)
T 3kcn_A 100 VFRFLNKP--CQMSDIKAAINAGIKQYDLVTSKEELL 134 (151)
T ss_dssp CSEEEESS--CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677776 478889999999999888776554433
No 14
>4fyl_A Ribosome hibernation protein YHBH; beta-alpha-beta-BETA-beta-alpha secondary structure fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio cholerae}
Probab=26.26 E-value=50 Score=19.47 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=14.8
Q ss_pred cHHHHHHHHHHHHhhHH
Q psy6426 36 RIEVVLKKLDEEHNKYK 52 (74)
Q Consensus 36 ~~e~vl~~lqE~~~KYK 52 (74)
.++.++.++..++.|||
T Consensus 73 AiD~a~dklerQlrk~K 89 (95)
T 4fyl_A 73 AIDSLVDKLVRQLNKHK 89 (95)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57788899999999998
No 15
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=25.97 E-value=31 Score=20.37 Aligned_cols=28 Identities=18% Similarity=0.088 Sum_probs=22.2
Q ss_pred cccccHHHhhcCCCCCcHHHHHHHHHHHHhh
Q psy6426 20 VFVDDVDKYMSLPENDRIEVVLKKLDEEHNK 50 (74)
Q Consensus 20 ~FIedVe~fm~~~~~~~~e~vl~~lqE~~~K 50 (74)
.+-++|.++|.. .++++|.+.++++.+.
T Consensus 32 ~rWe~IA~~V~g---KT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 32 GFWSEVAAAVGS---RSPEECQRKYMENPRG 59 (73)
T ss_dssp SHHHHHHHHTTT---SCHHHHHHHHHHSSSS
T ss_pred cHHHHHHHHcCC---CCHHHHHHHHHHHHhc
Confidence 467899999963 5799999988887553
No 16
>1mp1_A Ser/Arg-related nuclear matrix protein; four helix bundle, RNA binding protein; NMR {Homo sapiens} SCOP: a.188.1.1
Probab=25.78 E-value=17 Score=23.09 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=11.1
Q ss_pred cCCCCCCCCccccccc
Q psy6426 9 KVKSYGGIPEAVFVDD 24 (74)
Q Consensus 9 ~~~n~rgIP~A~FIed 24 (74)
.+.++.||| ..|+|.
T Consensus 89 aq~~~~GIP-~~~le~ 103 (111)
T 1mp1_A 89 AQENIAGIP-SAFLEL 103 (111)
T ss_dssp HTTSSSSCC-HHHHTS
T ss_pred hhcCCcCcC-HHHHHH
Confidence 578999999 556653
No 17
>2vt8_A HPI31, PI31, proteasome inhibitor PI31 subunit; polymorphism, hydrolase inhibitor; 2.6A {Homo sapiens}
Probab=25.15 E-value=31 Score=22.23 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=21.6
Q ss_pred cHHHhhcCCCCCcHHHHHHHHHHHHhhHH
Q psy6426 24 DVDKYMSLPENDRIEVVLKKLDEEHNKYK 52 (74)
Q Consensus 24 dVe~fm~~~~~~~~e~vl~~lqE~~~KYK 52 (74)
++++|+......+.+.+.+.++++...+|
T Consensus 109 ~~~~~V~~~~~~~~~~~~~~l~~L~~~~k 137 (153)
T 2vt8_A 109 NLDDYIDAEHLGDFHRTYKNSEELRSRIV 137 (153)
T ss_dssp EHHHHBCTTSTTCHHHHBSCHHHHHHHHH
T ss_pred cHHHhhcccccCCHHHHhhhHHHHHHHHH
Confidence 78999975333578888888888877765
No 18
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=24.32 E-value=51 Score=19.17 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=25.4
Q ss_pred CCCcccccccHHHhhcCCCCCcHHHHHHHHHHHH
Q psy6426 15 GIPEAVFVDDVDKYMSLPENDRIEVVLKKLDEEH 48 (74)
Q Consensus 15 gIP~A~FIedVe~fm~~~~~~~~e~vl~~lqE~~ 48 (74)
.-|.+.|+++.+.|+... -+.+.+++.+.+..
T Consensus 26 LEpd~~~l~~~erwv~GE--is~~e~i~~~~~r~ 57 (61)
T 3shg_B 26 LEPDPQVVAQMERVVVGE--LETSDVIKDLMERI 57 (61)
T ss_dssp CCCCHHHHHHHHHHHHTS--SCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHH
Confidence 468999999999999742 57888888776654
No 19
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase activating protein, heterotrimeric G-protein, lipoprotein, palmitate, phosphoprotein; 1.89A {Mus musculus} PDB: 3c7k_B* 2ik8_B*
Probab=24.08 E-value=65 Score=19.64 Aligned_cols=30 Identities=7% Similarity=0.171 Sum_probs=21.4
Q ss_pred ccccccHHHhhcCCCCCcHHHHHHHHHHHHhhH
Q psy6426 19 AVFVDDVDKYMSLPENDRIEVVLKKLDEEHNKY 51 (74)
Q Consensus 19 A~FIedVe~fm~~~~~~~~e~vl~~lqE~~~KY 51 (74)
-.|..+|+.|-... +.+...+..++.|.+|
T Consensus 48 l~Fw~~ve~~k~~~---~~~~~~~~a~~Iy~~y 77 (137)
T 3c7l_A 48 LEFWLACEEFKKIR---SATKLASRAHHIFDEY 77 (137)
T ss_dssp HHHHHHHHHHTTCC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC---CHHHHHHHHHHHHHHH
Confidence 46778888887643 3556777788888777
No 20
>3a09_A ALGQ1; sugar binding protein, alginate; HET: MAW BEM MAV; 1.40A {Sphingomonas} PDB: 1y3p_A* 1y3q_A 1y3n_A* 3vlv_A* 3vlu_A* 3vlw_A* 1j1n_A* 1kwh_A
Probab=23.97 E-value=18 Score=25.41 Aligned_cols=15 Identities=7% Similarity=0.115 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhhH
Q psy6426 37 IEVVLKKLDEEHNKY 51 (74)
Q Consensus 37 ~e~vl~~lqE~~~KY 51 (74)
.+.+++-.|+.|.+|
T Consensus 475 ~d~~~~~~q~~ydr~ 489 (490)
T 3a09_A 475 FYQVMIVMQKAYDRQ 489 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc
Confidence 344444444444443
No 21
>3gzf_A Replicase polyprotein 1AB; FCOV, NSP4, viral protein; 2.76A {Feline coronavirus}
Probab=22.50 E-value=25 Score=22.22 Aligned_cols=34 Identities=32% Similarity=0.464 Sum_probs=24.4
Q ss_pred ccccccHHHhhcCCCCCcHHHHHHHHHHHHhhHHH
Q psy6426 19 AVFVDDVDKYMSLPENDRIEVVLKKLDEEHNKYKF 53 (74)
Q Consensus 19 A~FIedVe~fm~~~~~~~~e~vl~~lqE~~~KYKf 53 (74)
..|+=|-+.|++-. |+-...-+++.--.|.|||+
T Consensus 18 ~TFvId~~~Y~kL~-n~is~~~~~~Yla~yNKYKY 51 (96)
T 3gzf_A 18 GTFVIDMRSYETLV-NSTSLDRIKSYANSFNKYKY 51 (96)
T ss_dssp SCEEECHHHHHHHH-TTTTHHHHHHHHHTHHHHHS
T ss_pred ceEEEccHHHHHHH-hhcCHHHHHHHHHHHhhhcc
Confidence 46888889998644 23233467888889999995
No 22
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=22.37 E-value=64 Score=19.31 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=16.2
Q ss_pred CcHHHHHHHHHHHHhhHHH
Q psy6426 35 DRIEVVLKKLDEEHNKYKF 53 (74)
Q Consensus 35 ~~~e~vl~~lqE~~~KYKf 53 (74)
..++.++.++..++.|||=
T Consensus 72 aAID~a~dkLerQLrK~K~ 90 (101)
T 3v26_X 72 AAIDGLIDKLARQLTKHKD 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999983
No 23
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.22 E-value=61 Score=19.63 Aligned_cols=30 Identities=10% Similarity=0.063 Sum_probs=21.4
Q ss_pred ccccccHHHhhcCCCCCcHHHHHHHHHHHHhhH
Q psy6426 19 AVFVDDVDKYMSLPENDRIEVVLKKLDEEHNKY 51 (74)
Q Consensus 19 A~FIedVe~fm~~~~~~~~e~vl~~lqE~~~KY 51 (74)
-.|..+|+.|-.. .+.+...+..+..|.+|
T Consensus 45 l~Fw~~ve~~k~~---~~~~~~~~~a~~Iy~~y 74 (140)
T 2dlv_A 45 IEFWIACEDFKKS---KGPQQIHLKAKAIYEKF 74 (140)
T ss_dssp HHHHHHHHHHTTC---CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcc---CCHHHHHHHHHHHHHHH
Confidence 4678888888764 24556777788888777
No 24
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=21.79 E-value=70 Score=19.37 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=27.3
Q ss_pred CCCCCCcccccccHHHhhcC-CCCCc-HHHHHHHHHHHHhhHH
Q psy6426 12 SYGGIPEAVFVDDVDKYMSL-PENDR-IEVVLKKLDEEHNKYK 52 (74)
Q Consensus 12 n~rgIP~A~FIedVe~fm~~-~~~~~-~e~vl~~lqE~~~KYK 52 (74)
+-+|+|.-.|++.=..-+.. .|..+ .+..++.+++.+.+||
T Consensus 127 ~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~~~~ 169 (172)
T 3f9u_A 127 GANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLENYR 169 (172)
T ss_dssp SCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHHHhh
Confidence 45799999999532222221 12234 8889999999999886
No 25
>3tqm_A Ribosome-associated factor Y; protein synthesis, protein binding; 2.45A {Coxiella burnetii}
Probab=21.77 E-value=68 Score=18.72 Aligned_cols=17 Identities=29% Similarity=0.731 Sum_probs=14.3
Q ss_pred cHHHHHHHHHHHHhhHH
Q psy6426 36 RIEVVLKKLDEEHNKYK 52 (74)
Q Consensus 36 ~~e~vl~~lqE~~~KYK 52 (74)
.++.++.++..++.|||
T Consensus 73 Aid~a~dklerqL~k~k 89 (96)
T 3tqm_A 73 TVDLLMHKLETQLSKYK 89 (96)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46778889999999998
No 26
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=20.82 E-value=94 Score=22.02 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=26.9
Q ss_pred cccccccHHHhhcCCCCCcHHHHHHHHHHHHhhHH
Q psy6426 18 EAVFVDDVDKYMSLPENDRIEVVLKKLDEEHNKYK 52 (74)
Q Consensus 18 ~A~FIedVe~fm~~~~~~~~e~vl~~lqE~~~KYK 52 (74)
+..|.++|-.|++..-..+++.++++..+++++|.
T Consensus 253 ~~~~~~~il~~Lq~lp~~di~~ll~~A~~l~~~~~ 287 (294)
T 3qwl_A 253 ALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHC 287 (294)
T ss_dssp HCCSHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCcccHHHHHHHHHHHHHHcC
Confidence 34566777788865434679999999999999984
No 27
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding protein G(K) subunit A; RGS, heterotrimeric G protein, signall complex; HET: GDP; 2.71A {Homo sapiens} PDB: 2i59_A
Probab=20.68 E-value=69 Score=19.90 Aligned_cols=30 Identities=10% Similarity=0.147 Sum_probs=18.9
Q ss_pred ccccccHHHhhcCCCCCcHHHHHHHHHHHHhhH
Q psy6426 19 AVFVDDVDKYMSLPENDRIEVVLKKLDEEHNKY 51 (74)
Q Consensus 19 A~FIedVe~fm~~~~~~~~e~vl~~lqE~~~KY 51 (74)
-.|..+|+.|-... +.+......+..|.+|
T Consensus 61 l~Fw~~ve~yk~~~---~~~~~~~~a~~Iy~~y 90 (153)
T 2ihb_B 61 VLFWLACEDFKKMQ---DKTQMQEKAKEIYMTF 90 (153)
T ss_dssp HHHHHHHHHHHHCC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC---CHHHHHHHHHHHHHHH
Confidence 35667777777542 3445666677777666
No 28
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=20.66 E-value=62 Score=21.97 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=16.5
Q ss_pred CcHHHHHHHHHHHHhhHH
Q psy6426 35 DRIEVVLKKLDEEHNKYK 52 (74)
Q Consensus 35 ~~~e~vl~~lqE~~~KYK 52 (74)
.++|.+.++|++.|++|.
T Consensus 10 ~~ve~v~~~L~e~h~qy~ 27 (170)
T 3l4q_C 10 DSVEAVGAQLKVYHQQYQ 27 (170)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 589999999999999987
No 29
>3q4o_A Uncharacterized protein MJ0754; ferritin-like protein, four-helix bundle, metal binding, DIN center, unknown function; HET: B3P; 1.34A {Methanocaldococcus jannaschii} PDB: 3q4q_A* 3q4r_A* 3q4n_A
Probab=20.52 E-value=1.2e+02 Score=20.90 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=29.8
Q ss_pred cccHHHhhcCCCCCcHHHHHHHHHHHH-hhHHHHHHHhhhhhhhh
Q psy6426 22 VDDVDKYMSLPENDRIEVVLKKLDEEH-NKYKFMEYSLSLLGVLF 65 (74)
Q Consensus 22 IedVe~fm~~~~~~~~e~vl~~lqE~~-~KYKfME~~l~~~~~~~ 65 (74)
|.|.+.++...++.|+..|..+|+.-- .-.+-+...|.|+|+-+
T Consensus 128 I~dl~~~l~~t~~~Di~~Vy~nL~~gS~nHLrAF~r~L~~~G~~Y 172 (196)
T 3q4o_A 128 IADLEKWINKTDNEDIKFVYENLMKGSRNHMRAFVRMLNNYGSNY 172 (196)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 346788887765567777766666543 44557778888888754
No 30
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=20.12 E-value=23 Score=20.79 Aligned_cols=35 Identities=9% Similarity=0.350 Sum_probs=24.4
Q ss_pred ccccccHHHhhcCCCCCcHHHHHHHHHHHHhhHHHH
Q psy6426 19 AVFVDDVDKYMSLPENDRIEVVLKKLDEEHNKYKFM 54 (74)
Q Consensus 19 A~FIedVe~fm~~~~~~~~e~vl~~lqE~~~KYKfM 54 (74)
-..|+....||.+.| ...|..++.=+..--||.|+
T Consensus 18 ~~iIdktA~fVaknG-~~fE~~l~~~~~~Np~F~FL 52 (78)
T 1x4o_A 18 KNLAEKLARFIADGG-PEVETIALQNNRENQAFSFL 52 (78)
T ss_dssp HHHHHHHHHHHHHSC-TTHHHHHHHHHHHCSSTTTT
T ss_pred HHHHHHHHHHHHHcC-HHHHHHHHHhcCCCCCCeec
Confidence 568999999998765 67888876544444455544
Done!