Query psy6426
Match_columns 74
No_of_seqs 101 out of 175
Neff 4.7
Searched_HMMs 13730
Date Fri Aug 16 17:41:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6426.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6426hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bv3a2 c.37.1.8 (A:7-282) Elo 37.2 6.2 0.00045 26.5 1.4 33 12-49 120-152 (276)
2 d2ywqa1 d.204.1.1 (A:1-95) Rib 34.0 9.9 0.00072 20.8 1.8 17 36-52 79-95 (95)
3 d1a6qa1 a.159.1.1 (A:297-368) 32.6 37 0.0027 18.7 4.2 38 24-61 19-69 (72)
4 d2cjja1 a.4.1.3 (A:8-70) Radia 30.2 34 0.0025 17.5 3.9 34 21-57 26-59 (63)
5 d1dcta_ c.66.1.26 (A:) DNA met 30.2 5 0.00036 25.3 -0.0 30 17-46 103-132 (324)
6 d2ik8b1 a.91.1.1 (B:65-180) Re 28.9 23 0.0017 19.3 2.9 29 20-51 29-57 (116)
7 d1krwa_ c.23.1.1 (A:) NTRC rec 24.3 9.1 0.00066 21.7 0.4 26 25-52 98-123 (123)
8 d1cmza_ a.91.1.1 (A:) Galpha i 22.4 22 0.0016 19.9 1.9 31 19-52 39-69 (128)
9 d2f8aa1 c.47.1.10 (A:12-195) G 21.1 15 0.0011 22.8 1.0 33 13-52 22-54 (184)
10 d1l4sa_ d.204.1.1 (A:) Ribosom 20.6 34 0.0025 19.1 2.5 17 36-52 72-88 (112)
11 d256ba_ a.24.3.1 (A:) Cytochro 20.3 14 0.001 21.3 0.7 12 36-47 86-97 (106)
12 d1gpua1 c.36.1.10 (A:3-337) Tr 20.2 16 0.0012 24.9 1.1 40 14-53 277-319 (335)
No 1
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}
Probab=37.16 E-value=6.2 Score=26.46 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=26.4
Q ss_pred CCCCCCcccccccHHHhhcCCCCCcHHHHHHHHHHHHh
Q psy6426 12 SYGGIPEAVFVDDVDKYMSLPENDRIEVVLKKLDEEHN 49 (74)
Q Consensus 12 n~rgIP~A~FIedVe~fm~~~~~~~~e~vl~~lqE~~~ 49 (74)
..+|+|...||...|. + +.+.+.++..+++.++
T Consensus 120 ~~~~lP~i~fINKmDr----~-~ad~~~~l~ei~~~l~ 152 (276)
T d2bv3a2 120 EKYKVPRIAFANKMDK----T-GADLWLVIRTMQERLG 152 (276)
T ss_dssp HTTTCCEEEEEECTTS----T-TCCHHHHHHHHHHTTC
T ss_pred HHcCCCEEEEEecccc----c-ccccchhHHHHHHHhC
Confidence 3579999999999883 2 2679999999988664
No 2
>d2ywqa1 d.204.1.1 (A:1-95) Ribosome binding protein Y (YfiA homologue) {Thermus thermophilus [TaxId: 274]}
Probab=34.02 E-value=9.9 Score=20.80 Aligned_cols=17 Identities=12% Similarity=0.526 Sum_probs=14.5
Q ss_pred cHHHHHHHHHHHHhhHH
Q psy6426 36 RIEVVLKKLDEEHNKYK 52 (74)
Q Consensus 36 ~~e~vl~~lqE~~~KYK 52 (74)
.++.++.++..++.|||
T Consensus 79 AiD~a~~klerqLrK~K 95 (95)
T d2ywqa1 79 AIDRAVDRLETQVKRFR 95 (95)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 56778889999999997
No 3
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.56 E-value=37 Score=18.67 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=25.8
Q ss_pred cHHHhhcCCCC--CcHHHHHHHHHH-----------HHhhHHHHHHHhhhh
Q psy6426 24 DVDKYMSLPEN--DRIEVVLKKLDE-----------EHNKYKFMEYSLSLL 61 (74)
Q Consensus 24 dVe~fm~~~~~--~~~e~vl~~lqE-----------~~~KYKfME~~l~~~ 61 (74)
.|++-+.+.++ .+...+++.+.. +++||.++|.-+.+.
T Consensus 19 ~v~eii~~~~~~~~dl~~Vm~~L~~e~Ip~LPPGGGL~sK~~~IE~vy~~l 69 (72)
T d1a6qa1 19 RVEEIIKKQGEGVPDLVHVMRTLASENIPSLPPGGELASKRNVIEAVYNRL 69 (72)
T ss_dssp HHHHHCC----CCCCHHHHHHHHHHTTCSSCCTTTGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHcccCCchHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHh
Confidence 35666654432 257778888886 689999999988764
No 4
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}
Probab=30.22 E-value=34 Score=17.47 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=26.8
Q ss_pred ccccHHHhhcCCCCCcHHHHHHHHHHHHhhHHHHHHH
Q psy6426 21 FVDDVDKYMSLPENDRIEVVLKKLDEEHNKYKFMEYS 57 (74)
Q Consensus 21 FIedVe~fm~~~~~~~~e~vl~~lqE~~~KYKfME~~ 57 (74)
.-+.|..+|.. .+++.+..+++.+....|.+|..
T Consensus 26 ~W~~Ia~~l~g---Rt~~qc~~r~~~L~~dik~iesg 59 (63)
T d2cjja1 26 RWANVARAVEG---RTPEEVKKHYEILVEDIKYIESG 59 (63)
T ss_dssp HHHHHHHHSTT---CCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCC---CCHHHHHHHHHHHHHHhhccccC
Confidence 46788999963 57888999998888888877753
No 5
>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}
Probab=30.22 E-value=5 Score=25.30 Aligned_cols=30 Identities=17% Similarity=0.395 Sum_probs=19.4
Q ss_pred CcccccccHHHhhcCCCCCcHHHHHHHHHH
Q psy6426 17 PEAVFVDDVDKYMSLPENDRIEVVLKKLDE 46 (74)
Q Consensus 17 P~A~FIedVe~fm~~~~~~~~e~vl~~lqE 46 (74)
|+..++|||..++........+.+++.+.+
T Consensus 103 Pk~~~lENV~~~~~~~~~~~~~~~l~~l~~ 132 (324)
T d1dcta_ 103 PIFFLAENVKGMMAQRHNKAVQEFIQEFDN 132 (324)
T ss_dssp CSEEEEEEEGGGGSGGGHHHHHHHHHHHHH
T ss_pred CceeeccccccccccccchhhHHHHhHHhh
Confidence 899999999999964321234444444443
No 6
>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16, RGS16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.90 E-value=23 Score=19.34 Aligned_cols=29 Identities=3% Similarity=0.159 Sum_probs=21.8
Q ss_pred cccccHHHhhcCCCCCcHHHHHHHHHHHHhhH
Q psy6426 20 VFVDDVDKYMSLPENDRIEVVLKKLDEEHNKY 51 (74)
Q Consensus 20 ~FIedVe~fm~~~~~~~~e~vl~~lqE~~~KY 51 (74)
.|..+|+.|-... +...+....++.|.||
T Consensus 29 ~Fw~~ve~~~~~~---~~~~~~~~a~~Iy~~y 57 (116)
T d2ik8b1 29 EFWLACEEFKKIR---SATKLASRAHQIFEEF 57 (116)
T ss_dssp HHHHHHHHHTTCC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC---CHHHHHHHHHHHHHHH
Confidence 5788899997643 4555777888889888
No 7
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
Probab=24.34 E-value=9.1 Score=21.69 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=19.7
Q ss_pred HHHhhcCCCCCcHHHHHHHHHHHHhhHH
Q psy6426 25 VDKYMSLPENDRIEVVLKKLDEEHNKYK 52 (74)
Q Consensus 25 Ve~fm~~~~~~~~e~vl~~lqE~~~KYK 52 (74)
+.+|+.+| -+.+.++..++..+++|+
T Consensus 98 a~dyl~KP--~~~~eL~~~i~~~l~~~q 123 (123)
T d1krwa_ 98 AFDYLPKP--FDIDEAVALVERAISHYQ 123 (123)
T ss_dssp EEEECSSC--CHHHHHHHHHHHHHHHHC
T ss_pred CCeEEeCc--CCHHHHHHHHHHHHHccC
Confidence 34578776 478888888888888774
No 8
>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.42 E-value=22 Score=19.95 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=22.0
Q ss_pred ccccccHHHhhcCCCCCcHHHHHHHHHHHHhhHH
Q psy6426 19 AVFVDDVDKYMSLPENDRIEVVLKKLDEEHNKYK 52 (74)
Q Consensus 19 A~FIedVe~fm~~~~~~~~e~vl~~lqE~~~KYK 52 (74)
-.|..+|+.|-+.+ +-+......++.|.||=
T Consensus 39 l~Fw~~ve~fk~~~---~~~~~~~~a~~Iy~~yi 69 (128)
T d1cmza_ 39 MLFWLACEELKAEA---NQHVVDEKARLIYEDYV 69 (128)
T ss_dssp HHHHHHHHHGGGTC---CSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccC---CHHHHHHHHHHHHHHHh
Confidence 46888999998644 22345567788888885
No 9
>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.12 E-value=15 Score=22.79 Aligned_cols=33 Identities=9% Similarity=0.221 Sum_probs=24.5
Q ss_pred CCCCCcccccccHHHhhcCCCCCcHHHHHHHHHHHHhhHH
Q psy6426 13 YGGIPEAVFVDDVDKYMSLPENDRIEVVLKKLDEEHNKYK 52 (74)
Q Consensus 13 ~rgIP~A~FIedVe~fm~~~~~~~~e~vl~~lqE~~~KYK 52 (74)
.+| +...|.+|.++++ -.......|+++|+||+
T Consensus 22 ykG--KvvLivN~AS~Cg-----~t~~~y~~L~~L~~ky~ 54 (184)
T d2f8aa1 22 LRG--KVLLIENVASLGG-----TTVRDYTQMNELQRRLG 54 (184)
T ss_dssp GTT--SEEEEEEECSSST-----THHHHHHHHHHHHHHHG
T ss_pred cCC--CEEEEEEecccCC-----cchhhhHHHHHhhhhhc
Confidence 455 6778888888875 13345788999999996
No 10
>d1l4sa_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue) {Escherichia coli [TaxId: 562]}
Probab=20.61 E-value=34 Score=19.08 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=14.7
Q ss_pred cHHHHHHHHHHHHhhHH
Q psy6426 36 RIEVVLKKLDEEHNKYK 52 (74)
Q Consensus 36 ~~e~vl~~lqE~~~KYK 52 (74)
.++.++.++..++.|||
T Consensus 72 Aid~a~~klerQLrk~K 88 (112)
T d1l4sa_ 72 AINELINKLERQLNKLQ 88 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57788899999999997
No 11
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=20.26 E-value=14 Score=21.29 Aligned_cols=12 Identities=8% Similarity=0.205 Sum_probs=5.3
Q ss_pred cHHHHHHHHHHH
Q psy6426 36 RIEVVLKKLDEE 47 (74)
Q Consensus 36 ~~e~vl~~lqE~ 47 (74)
.+...|+.++.+
T Consensus 86 eAk~~l~~l~~~ 97 (106)
T d256ba_ 86 EAQAAAEQLKTT 97 (106)
T ss_dssp HHHHHHTHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 12
>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.24 E-value=16 Score=24.89 Aligned_cols=40 Identities=18% Similarity=0.142 Sum_probs=23.6
Q ss_pred CCC-Cccccc--ccHHHhhcCCCCCcHHHHHHHHHHHHhhHHH
Q psy6426 14 GGI-PEAVFV--DDVDKYMSLPENDRIEVVLKKLDEEHNKYKF 53 (74)
Q Consensus 14 rgI-P~A~FI--edVe~fm~~~~~~~~e~vl~~lqE~~~KYKf 53 (74)
-|+ |..+|. ++|-++..+.-...-+..-+.|++++.+||-
T Consensus 277 Lg~~~~~pF~ip~eV~~~~~~~~~~~g~~~~~~W~~~~~~y~~ 319 (335)
T d1gpua1 277 FGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQK 319 (335)
T ss_dssp TTCCTTCCSCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 467 567776 6776655321001123344678888888874
Done!