RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6426
         (74 letters)



>d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase
          {Thermotoga maritima [TaxId: 2336]}
          Length = 296

 Score = 26.2 bits (56), Expect = 0.36
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 35 DRIEVVLKKLDEEHNKYKF 53
          +RI ++L KL   H +YK 
Sbjct: 27 ERISMLLSKLGNPHLEYKT 45


>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase
          {Lactobacillus casei [TaxId: 1582]}
          Length = 296

 Score = 25.4 bits (54), Expect = 0.75
 Identities = 4/18 (22%), Positives = 7/18 (38%)

Query: 35 DRIEVVLKKLDEEHNKYK 52
           RI  +L  L     + +
Sbjct: 23 RRILTLLHALGNPQQQGR 40


>d2ajta2 c.85.1.2 (A:1-328) L-arabinose isomerase AraA {Escherichia
           coli [TaxId: 562]}
          Length = 328

 Score = 24.0 bits (52), Expect = 2.0
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 23  DDVDKYMSLPENDRIEVVLKKLDEEHNKYKFMEYSLSLLGVLFSLVGSASAL 74
              +K  ++ E  RIE+ +K+  E+   +     +   L  L  L G A   
Sbjct: 245 IHGEKRQNVLEAARIELGMKRFLEQGG-FHAFTTTFEDLHGLKQLPGLAVQR 295


>d2cs4a1 d.15.1.5 (A:8-91) Ras association domain-containing
          protein 8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 84

 Score = 23.1 bits (50), Expect = 2.5
 Identities = 3/23 (13%), Positives = 9/23 (39%)

Query: 31 LPENDRIEVVLKKLDEEHNKYKF 53
          L  ++   + L K  +  +  + 
Sbjct: 53 LAPHENPIISLNKWGQYASDVQL 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.134    0.365 

Gapped
Lambda     K      H
   0.267   0.0406    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 268,263
Number of extensions: 11110
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 11
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)