BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6437
(254 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BRH0|TMTC3_MOUSE Transmembrane and TPR repeat-containing protein 3 OS=Mus musculus
GN=Tmtc3 PE=2 SV=2
Length = 920
Score = 147 bits (370), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 94/128 (73%), Gaps = 1/128 (0%)
Query: 5 AILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFHL 64
AIL N D+ TP+ LF ND+WGTP++ SH SYRPLTVLTFRLNYL LKP S+HL
Sbjct: 40 AILDNKDLHPSTPLKTLFQNDFWGTPMSEERSHKSYRPLTVLTFRLNYLLSELKPMSYHL 99
Query: 65 INNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVSGIVGRADLLCTLFYL 124
+N + H A+ ++++ + ++R+ + A+L+FAVHPIHTEAV+G+VGRA+LL ++F+L
Sbjct: 100 LNTVFH-AVVSVIFLKVCRLFLDKRSSMIAALLFAVHPIHTEAVTGVVGRAELLSSVFFL 158
Query: 125 STILIYIK 132
+ L Y K
Sbjct: 159 AAFLSYTK 166
>sp|Q9VQE9|TMTC1_DROME Transmembrane and TPR repeat-containing protein CG31690
OS=Drosophila melanogaster GN=CG31690 PE=2 SV=3
Length = 859
Score = 145 bits (366), Expect = 3e-34, Method: Composition-based stats.
Identities = 67/127 (52%), Positives = 88/127 (69%)
Query: 4 RAILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFH 63
RAIL N DV P+ +L ND+WGTP+ SHGS+RPL VL+FRLNYLA G+ P +H
Sbjct: 48 RAILANGDVTGARPLANLLRNDFWGTPLVDSGSHGSWRPLCVLSFRLNYLAGGMTPLGYH 107
Query: 64 LINNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVSGIVGRADLLCTLFY 123
L+N +LH T+LV++++ +LP+R L A +FAVHP HTEAV+G+VGRADL + Y
Sbjct: 108 LVNVMLHCVATWLVFLVARTLLPSRMGVLAAGALFAVHPAHTEAVAGLVGRADLASCVCY 167
Query: 124 LSTILIY 130
L L Y
Sbjct: 168 LLAYLSY 174
>sp|Q6ZXV5|TMTC3_HUMAN Transmembrane and TPR repeat-containing protein 3 OS=Homo sapiens
GN=TMTC3 PE=1 SV=2
Length = 915
Score = 144 bits (364), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 92/128 (71%), Gaps = 1/128 (0%)
Query: 5 AILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFHL 64
AIL N D+ TP+ LF ND+WGTP++ SH SYRPLTVLTFRLNYL LKP S+HL
Sbjct: 35 AILDNKDLHPSTPLKTLFQNDFWGTPMSEERSHKSYRPLTVLTFRLNYLLSELKPMSYHL 94
Query: 65 INNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVSGIVGRADLLCTLFYL 124
+N + H+ ++ + + L N ++ + ASL+FAVHPIHTEAV+G+VGRA+LL ++F+L
Sbjct: 95 LNMIFHAVVSVIFLKVCKLFLDN-KSSVIASLLFAVHPIHTEAVTGVVGRAELLSSIFFL 153
Query: 125 STILIYIK 132
+ L Y +
Sbjct: 154 AAFLSYTR 161
>sp|Q9V3X5|TMTC2_DROME Transmembrane and TPR repeat-containing protein CG4341
OS=Drosophila melanogaster GN=CG4341 PE=2 SV=1
Length = 938
Score = 141 bits (356), Expect = 4e-33, Method: Composition-based stats.
Identities = 85/218 (38%), Positives = 111/218 (50%), Gaps = 46/218 (21%)
Query: 4 RAILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYL-ACGLKPRSF 62
RAIL N DV TP F+ND+WGTP+T SHGS+RPL VL+FRLNYL G P F
Sbjct: 60 RAILANADVSGGTPWQRSFSNDFWGTPLTDSGSHGSWRPLCVLSFRLNYLIGGGFAPWGF 119
Query: 63 HLINNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVSGIVGRADLLCTLF 122
HL+NNLLH T LV ++ +L + A L A +FA HPIHTEAV+G+VGRADL +
Sbjct: 120 HLVNNLLHCVATALVVRVARTLLASVWAVLAAGALFAAHPIHTEAVAGVVGRADLAACVC 179
Query: 123 YLSTILIYI---KWIKLGGREQYKYNIKISIMNKYNNIYCHQATTSTYNLCCHEKDSSHT 179
YL T L Y+ +W + G Q+
Sbjct: 180 YLLTYLSYLRHMRWRESGDPRQW------------------------------------- 202
Query: 180 KKDTICAVMRRTALAGAAMISKETGVTVLLICICIELL 217
A+ LA A ++ KET +T LL+C +++
Sbjct: 203 -----LALGATLILAAAGLLCKETAITALLVCALFDVM 235
>sp|Q8BG19|TMTC4_MOUSE Transmembrane and TPR repeat-containing protein 4 OS=Mus musculus
GN=Tmtc4 PE=2 SV=1
Length = 741
Score = 140 bits (354), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 124/229 (54%), Gaps = 51/229 (22%)
Query: 3 SRAILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLN-YLACGLKPRS 61
S AI+ N D+Q TP+GDL+++D+WG+ ++S SH SYRPLTVLTFR+N YL+ G P
Sbjct: 46 SEAIVNNKDLQSDTPLGDLWHHDFWGSKLSSNTSHKSYRPLTVLTFRINYYLSGGFHPVG 105
Query: 62 FHLINNLLHSAITYLVYILSSYVLPN-------------RRARLFASLIFAVHPIHTEAV 108
FH++N LLH +I+ L+ + S + RA L A+L+FAVHP+HTE V
Sbjct: 106 FHVVNILLHGSISILMLDVFSVLFGGLQYTGKGQRVHLAPRASLLATLLFAVHPVHTECV 165
Query: 109 SGIVGRADLLCTLFYLSTILIYIKWIKLGGREQYKYNIKISIMNKYNNIYCHQATTSTYN 168
+G+VGRADLLC LF+L + L YC QA T N
Sbjct: 166 AGVVGRADLLCALFFLLSFL----------------------------GYC-QAFKETGN 196
Query: 169 LCCHEKDSSHTKKDTICAVMRRTALAGAAMISKETGVTVLLICICIELL 217
K+ +H+ + V+ L AM+ KE G+TVL + ++L
Sbjct: 197 -----KEGTHS---STFWVLLSIFLGAVAMLCKEQGITVLGLNAVFDIL 237
>sp|Q5T4D3|TMTC4_HUMAN Transmembrane and TPR repeat-containing protein 4 OS=Homo sapiens
GN=TMTC4 PE=2 SV=2
Length = 741
Score = 128 bits (321), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 124/229 (54%), Gaps = 52/229 (22%)
Query: 3 SRAILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLN-YLACGLKPRS 61
S AI+ N D+Q +TP+GDL+++D+WG+ ++S SH SYRPLTVLTFR+N YL+ G P
Sbjct: 47 SEAIVNNKDLQAETPLGDLWHHDFWGSRLSSNTSHKSYRPLTVLTFRINYYLSGGFHPVG 106
Query: 62 FHLINNLLHSAITYLVYILSS-------YVLPNRR------ARLFASLIFAVHPIHTEAV 108
FH++N LLHS I+ L+ + S Y RR A L A+L+FAVHP+HTE V
Sbjct: 107 FHVVNILLHSGISVLMVDVFSVLFGGLQYTSKGRRLHLAPRASLLAALLFAVHPVHTECV 166
Query: 109 SGIVGRADLLCTLFYLSTILIYIKWIKLGGREQYKYNIKISIMNKYNNIYCHQATTSTYN 168
+G+VGRADLLC LF+L + L Y K + +E A +ST+
Sbjct: 167 AGVVGRADLLCALFFLLSFLGYCKAFRESNKE--------------------GAHSSTF- 205
Query: 169 LCCHEKDSSHTKKDTICAVMRRTALAGAAMISKETGVTVLLICICIELL 217
V+ L AM+ KE G+TVL + ++L
Sbjct: 206 -----------------WVLLSIFLGAVAMLCKEQGITVLGLNAVFDIL 237
>sp|Q6DCD5|TMTC2_XENLA Transmembrane and TPR repeat-containing protein 2 OS=Xenopus laevis
GN=tmtc2 PE=2 SV=1
Length = 836
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/115 (56%), Positives = 79/115 (68%)
Query: 3 SRAILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSF 62
SRAI TN D+ +TP +F ND+WGT +T SH SYRPL L+FRLNYL GL P ++
Sbjct: 28 SRAIKTNQDLLPETPWNHIFFNDFWGTLLTHSGSHKSYRPLCTLSFRLNYLFGGLDPWNY 87
Query: 63 HLINNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVSGIVGRADL 117
HL+N LLHSA+T L L + + L A L+FA HPIHTEAVSGIVGRAD+
Sbjct: 88 HLVNVLLHSAVTGLFTNLCKALFGSGCWTLIAGLLFASHPIHTEAVSGIVGRADV 142
>sp|Q8N394|TMTC2_HUMAN Transmembrane and TPR repeat-containing protein 2 OS=Homo sapiens
GN=TMTC2 PE=2 SV=1
Length = 836
Score = 124 bits (311), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/130 (53%), Positives = 89/130 (68%)
Query: 3 SRAILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSF 62
SRAI TN D+ +TP +F ND+WGT +T SH SYRPL L+FRLN+ GL P S+
Sbjct: 28 SRAIKTNQDLLPETPWTHIFYNDFWGTLLTHSGSHKSYRPLCTLSFRLNHAIGGLNPWSY 87
Query: 63 HLINNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVSGIVGRADLLCTLF 122
HL+N LLH+A+T L S +L + A L+FA HPIHTEAV+GIVGRAD+ +LF
Sbjct: 88 HLVNVLLHAAVTGLFTSFSKILLGDGYWTFMAGLMFASHPIHTEAVAGIVGRADVGASLF 147
Query: 123 YLSTILIYIK 132
+L ++L YIK
Sbjct: 148 FLLSLLCYIK 157
>sp|Q56A06|TMTC2_MOUSE Transmembrane and TPR repeat-containing protein 2 OS=Mus musculus
GN=Tmtc2 PE=2 SV=1
Length = 836
Score = 124 bits (310), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/130 (53%), Positives = 89/130 (68%)
Query: 3 SRAILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSF 62
SRAI TN D+ +TP +F ND+WGT +T SH SYRPL L+FRLN+ GL P S+
Sbjct: 28 SRAIKTNQDLLPETPWTHIFYNDFWGTLLTHSGSHKSYRPLCTLSFRLNHAIGGLNPWSY 87
Query: 63 HLINNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVSGIVGRADLLCTLF 122
HL+N LLH+A+T L S +L + A L+FA HPIHTEAV+GIVGRAD+ +LF
Sbjct: 88 HLVNVLLHAAVTGLFTRFSKALLGDGYWTFMAGLMFASHPIHTEAVAGIVGRADVGASLF 147
Query: 123 YLSTILIYIK 132
+L ++L YIK
Sbjct: 148 FLLSLLCYIK 157
>sp|Q3UV71|TMTC1_MOUSE Transmembrane and TPR repeat-containing protein 1 OS=Mus musculus
GN=Tmtc1 PE=2 SV=2
Length = 942
Score = 117 bits (294), Expect = 6e-26, Method: Composition-based stats.
Identities = 82/230 (35%), Positives = 113/230 (49%), Gaps = 40/230 (17%)
Query: 5 AILTNPDVQLKTPVG-DLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFH 63
AI+ NPDV+ TP+ +F ND+WG + SH SYRPL VL+FRLN G+ P FH
Sbjct: 55 AIVNNPDVRPGTPLRWAIFANDFWGKGLADSTSHKSYRPLCVLSFRLNIFLTGMNPFYFH 114
Query: 64 LINNLLHSAITY-LVYILSSYVLPNRRARLFASLIFAVHPIHTEAVSGIVGRADLLCTLF 122
+N +LH +T L+Y V NR +L+FAVHP+HTEAV+GIVGRAD+L L
Sbjct: 115 AVNVILHCLVTLVLMYTCDKTVFKNRGLAFVTALLFAVHPVHTEAVAGIVGRADVLACLL 174
Query: 123 YLSTILIYIKWIKLGGREQYKYNIKISIMNKYNNIYCHQATTSTYNLCCHEKDSSHTKKD 182
+L L Y + + G Q C T S +
Sbjct: 175 FLLAFLSYQRSLDQGCAGQ-----------------CFPTTASPF--------------- 202
Query: 183 TICAVMRRTALAGAAMISKETGVTVLLICICIELLHNKVCTHLKNSSSNG 232
++ L AM+ KETG+TV +C+ +L +H ++ SNG
Sbjct: 203 ---FLLLSLFLGTCAMLVKETGITVFGVCLVYDLFSP---SHKQDKLSNG 246
>sp|Q8IUR5|TMTC1_HUMAN Transmembrane and TPR repeat-containing protein 1 OS=Homo sapiens
GN=TMTC1 PE=1 SV=3
Length = 882
Score = 115 bits (287), Expect = 4e-25, Method: Composition-based stats.
Identities = 57/115 (49%), Positives = 73/115 (63%), Gaps = 2/115 (1%)
Query: 5 AILTNPDVQLKTPVG-DLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFH 63
AI+ NPDV+ P+ +F ND+WG + SH SYRPL VLTF+LN G+ P FH
Sbjct: 56 AIVNNPDVRPGAPLRWGIFTNDFWGKGMAENTSHKSYRPLCVLTFKLNIFLTGMNPFYFH 115
Query: 64 LINNLLHSAITY-LVYILSSYVLPNRRARLFASLIFAVHPIHTEAVSGIVGRADL 117
+N +LH +T L+Y V NR +L+FAVHPIHTEAV+GIVGRAD+
Sbjct: 116 AVNIILHCLVTLVLMYTCDKTVFKNRGLAFVTALLFAVHPIHTEAVAGIVGRADV 170
>sp|Q7K4B6|TMTC3_DROME Transmembrane and TPR repeat-containing protein CG4050
OS=Drosophila melanogaster GN=CG4050 PE=2 SV=1
Length = 926
Score = 109 bits (273), Expect = 2e-23, Method: Composition-based stats.
Identities = 64/148 (43%), Positives = 87/148 (58%), Gaps = 20/148 (13%)
Query: 5 AILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFHL 64
AI N D++ TP+ ++F ND+WGTP+ SH SYRPLTVLTFR NYL L+P +HL
Sbjct: 63 AIRDNKDLRPHTPLINVFLNDFWGTPMRKEQSHKSYRPLTVLTFRFNYLLHALEPFGYHL 122
Query: 65 INNLLHSAITYLVYILSSYVLPNRRAR--------------------LFASLIFAVHPIH 104
+N LLH ++ L + +L A ASL+FAVHP+H
Sbjct: 123 VNLLLHLSVCLLWRRVCRLLLRQCAASGSNAISAPSSSSVSQLNTCAFVASLLFAVHPVH 182
Query: 105 TEAVSGIVGRADLLCTLFYLSTILIYIK 132
TEAV+G+VGRA+LL ++ +L+ L Y K
Sbjct: 183 TEAVTGVVGRAELLSSICFLAAFLSYAK 210
>sp|Q20144|TMTC1_CAEEL Transmembrane and TPR repeat-containing protein F38B6.6
OS=Caenorhabditis elegans GN=F38B6.6 PE=3 SV=2
Length = 690
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 82/133 (61%), Gaps = 3/133 (2%)
Query: 3 SRAILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSF 62
+ +I+ NP V K P+ +F+ D+WG I+S NSH SYRP+T TF LNY +
Sbjct: 56 AESIVNNPIVNGKDPLLQIFSRDFWGRSISSSNSHKSYRPVTTFTFWLNYKLHETSTLGY 115
Query: 63 HLINNLLHSAITYLVYILS---SYVLPNRRARLFASLIFAVHPIHTEAVSGIVGRADLLC 119
H++N + H+ T + Y L ++ AS++FAVHP+HTEAV+ I GRA+LL
Sbjct: 116 HVVNIICHTVATLVFYKLGKQLEHIFDFFNIAFSASILFAVHPVHTEAVANITGRAELLM 175
Query: 120 TLFYLSTILIYIK 132
T+F L+ +++++K
Sbjct: 176 TIFSLAALILHVK 188
>sp|Q9VF81|TMTC4_DROME Transmembrane and TPR repeat-containing protein CG5038
OS=Drosophila melanogaster GN=CG5038 PE=1 SV=1
Length = 705
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 5/132 (3%)
Query: 5 AILTNPDV-QLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFH 63
AI+ N DV L T +F +D+WG + S +SH S+RPLT L F Y GL
Sbjct: 44 AIVKNRDVNSLPTNWTAIFTHDFWGASLLSSDSHKSFRPLTTLMFHCEYALLGLSAAHMK 103
Query: 64 LINNLLHSAITYLVY--ILSSYV--LPNRRARLFASLIFAVHPIHTEAVSGIVGRADLLC 119
+N LLH T L++ I S YV + R + ++ +FA HPIHTEAVSG+VGRA+L+
Sbjct: 104 FLNLLLHCVNTLLMWRLIRSLYVPEVSTARWAILSAALFAAHPIHTEAVSGVVGRAELMF 163
Query: 120 TLFYLSTILIYI 131
+ +L +L+ +
Sbjct: 164 GMIHLLCLLLTV 175
>sp|P47208|TCPD_CAEEL T-complex protein 1 subunit delta OS=Caenorhabditis elegans
GN=cct-4 PE=2 SV=1
Length = 540
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 223 THLKNSSSNGKSDYFLSLRKHIITEKIEYDV 253
T L+N+ +NG S Y +++RK +T+ +E DV
Sbjct: 478 TELRNNHANGNSSYGVNVRKGYVTDMVEEDV 508
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,485,023
Number of Sequences: 539616
Number of extensions: 3393888
Number of successful extensions: 10119
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10076
Number of HSP's gapped (non-prelim): 34
length of query: 254
length of database: 191,569,459
effective HSP length: 115
effective length of query: 139
effective length of database: 129,513,619
effective search space: 18002393041
effective search space used: 18002393041
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)