Query psy6437
Match_columns 254
No_of_seqs 154 out of 494
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 17:54:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rce_A Oligosaccharide transfe 95.6 0.08 2.7E-06 53.8 11.5 94 42-138 83-178 (724)
2 1vq8_D 50S ribosomal protein L 47.5 6.7 0.00023 33.3 1.5 33 220-253 90-122 (177)
3 3r8s_F 50S ribosomal protein L 33.8 16 0.00056 30.8 1.7 29 225-253 116-144 (177)
4 3j21_E 50S ribosomal protein L 31.6 9.4 0.00032 32.7 -0.1 31 224-254 101-131 (186)
5 2zkr_d 60S ribosomal protein L 27.9 12 0.00042 31.6 -0.0 28 225-253 94-121 (178)
6 4a17_D L21, RPL11, 60S ribosom 27.6 14 0.00048 31.3 0.2 28 225-253 91-118 (172)
7 1iq4_A 50S ribosomal protein L 27.4 14 0.00047 31.4 0.1 28 226-253 118-145 (179)
8 3iz5_E 60S ribosomal protein L 24.7 16 0.00054 31.2 0.0 28 225-253 93-120 (180)
9 1mji_A 50S ribosomal protein L 23.2 13 0.00046 31.5 -0.7 28 226-253 121-148 (182)
10 3bbo_H Ribosomal protein L5; l 20.7 18 0.00062 31.7 -0.4 28 226-253 133-160 (220)
No 1
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=95.57 E-value=0.08 Score=53.83 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=65.4
Q ss_pred hhHhHHhHHHHHhcCCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhccc-chhhHHHHhhHHH
Q psy6437 42 PLTVLTFRLNYLACGLKPR-SFHLINNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTE-AVSGIVGRADLLC 119 (254)
Q Consensus 42 PL~~lsf~l~~~l~G~~p~-~fHlvNlllH~l~~~Lv~~l~~~l~~~~~~A~laAlLFavHPihtE-aV~~Iv~R~~lLa 119 (254)
|++.++ +.-+.++|.+.. ..-..-.++-.+.+..+|.+.+++.+. .+++++|++.++-|.+.. +++. .-+.|.++
T Consensus 83 ~~~~l~-a~l~~i~g~sl~~v~~~lp~ifg~L~vi~~yll~~el~~~-~aGl~AAll~ai~P~~i~RS~aG-~~D~e~l~ 159 (724)
T 3rce_A 83 SLSTLT-YWLYSILPFSFESIILYMSTFFASLIVVPIILIAREYKLT-TYGFIAALLGSIANSYYNRTMSG-YYDTDMLV 159 (724)
T ss_dssp HHHHHH-HHHHHSCSSCHHHHHHHHHHHHGGGGHHHHHHHHHHTTCH-HHHHHHHHHHTTSHHHHHTSSTT-CCSGGGGT
T ss_pred hHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHhccc-cccchhHH
Confidence 444444 444567776632 222333444556677888899988764 589999999999998753 3321 35678899
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q psy6437 120 TLFYLSTILIYIKWIKLGG 138 (254)
Q Consensus 120 ~lF~Llal~~yl~~~~~~~ 138 (254)
.+|.++++++++++.++++
T Consensus 160 i~~~ll~~~~~i~alk~~~ 178 (724)
T 3rce_A 160 LVLPMLILLTFIRLTINKD 178 (724)
T ss_dssp THHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 9999999999999988753
No 2
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D* 1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D* 1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D* 1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ...
Probab=47.54 E-value=6.7 Score=33.32 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=15.7
Q ss_pred cccccccccccCCCchhhhhhhhhhhccccccCC
Q psy6437 220 KVCTHLKNSSSNGKSDYFLSLRKHIITEKIEYDV 253 (254)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (254)
++.. ++..+++|.-+|-++++++++=..||||+
T Consensus 90 rvrd-l~~~sfd~~GN~sfGi~e~i~FPEI~yD~ 122 (177)
T 1vq8_D 90 PLAE-LATSQFDDTGNFSFGVEEHTEFPSQEYDP 122 (177)
T ss_dssp GGSC-CCGGGBCSSSCEEEC--------------
T ss_pred Hhcc-CCccccCCCceEEEecceeecCccccccc
Confidence 5555 88888898889999999999998999996
No 3
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_F* 3oat_F* 3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F 1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F 3izt_G* 3izu_G* 3kcr_F ...
Probab=33.78 E-value=16 Score=30.83 Aligned_cols=29 Identities=34% Similarity=0.673 Sum_probs=24.6
Q ss_pred ccccccCCCchhhhhhhhhhhccccccCC
Q psy6437 225 LKNSSSNGKSDYFLSLRKHIITEKIEYDV 253 (254)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (254)
++.++.+|..+|=++++++++=..||||+
T Consensus 116 l~~~sfd~~GN~~fGi~e~~~FPEi~yD~ 144 (177)
T 3r8s_F 116 LSAKSFDGRGNYSMGVREQIIFPEIDYDK 144 (177)
T ss_dssp CCTTCBCSSSCEECCCSCGGGSSSSCSSS
T ss_pred cCccccCCCceEeeeccccccCCCccccc
Confidence 44556777789999999999988899997
No 4
>3j21_E 50S ribosomal protein L5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.60 E-value=9.4 Score=32.69 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=27.3
Q ss_pred cccccccCCCchhhhhhhhhhhccccccCCC
Q psy6437 224 HLKNSSSNGKSDYFLSLRKHIITEKIEYDVN 254 (254)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (254)
-++.++++|.-+|-++++++++=-.||||+.
T Consensus 101 gl~~~sFD~~GN~sfGi~E~i~FPeI~yD~~ 131 (186)
T 3j21_E 101 RLKASSFDEHGNVCFGIEEHINIPGVEYDPE 131 (186)
T ss_dssp SBCSSSBCTTSCEEECCCSCCCCTTTSSCSS
T ss_pred CCCccccCCCceEEEcCcceeeccccccccc
Confidence 5677888888999999999999989999973
No 5
>2zkr_d 60S ribosomal protein L11; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=27.92 E-value=12 Score=31.65 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=25.0
Q ss_pred ccccccCCCchhhhhhhhhhhccccccCC
Q psy6437 225 LKNSSSNGKSDYFLSLRKHIITEKIEYDV 253 (254)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (254)
++..+++|.-+|-++++++++= .|+||+
T Consensus 94 l~~~sfd~~GN~sfGi~E~i~F-Ei~yD~ 121 (178)
T 2zkr_d 94 LRKNNFSDTGNFGFGIQEHIDL-GIKYDP 121 (178)
T ss_dssp BCTTTBCTTSCEEESSSSCSSS-SCCCSS
T ss_pred ccccCcCCCceEEEecchheee-eeeecc
Confidence 7778888888999999999998 899997
No 6
>4a17_D L21, RPL11, 60S ribosomal protein L11; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_D 4a1c_D 4a1e_D
Probab=27.55 E-value=14 Score=31.26 Aligned_cols=28 Identities=18% Similarity=0.426 Sum_probs=25.5
Q ss_pred ccccccCCCchhhhhhhhhhhccccccCC
Q psy6437 225 LKNSSSNGKSDYFLSLRKHIITEKIEYDV 253 (254)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (254)
++.++++|.-+|=+++++|++= .|+||+
T Consensus 91 l~~~sFD~~GN~sfGi~e~i~F-ei~yD~ 118 (172)
T 4a17_D 91 LRKKNFSNTGNFGFGIQEHIDL-GMKYDP 118 (172)
T ss_dssp ECGGGBCTTSCEEEEECCGGGG-TCCCCG
T ss_pred CCCcCcCCCceEEEcccccccc-cccccc
Confidence 7788889888999999999998 899997
No 7
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding PROT; 1.80A {Geobacillus stearothermophilus} SCOP: d.77.1.1
Probab=27.40 E-value=14 Score=31.39 Aligned_cols=28 Identities=29% Similarity=0.657 Sum_probs=23.5
Q ss_pred cccccCCCchhhhhhhhhhhccccccCC
Q psy6437 226 KNSSSNGKSDYFLSLRKHIITEKIEYDV 253 (254)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (254)
+..+++|..+|-++++++++=..||||+
T Consensus 118 ~~~sfd~~GN~sfGi~e~~~FPEi~yD~ 145 (179)
T 1iq4_A 118 SKKSFDGRGNYTLGIKEQLIFPEIDYDK 145 (179)
T ss_dssp CSSCBCSSSEEEEEESCGGGSTTCCGGG
T ss_pred CccccCCCceEEEecchhhcCccccccc
Confidence 3455667779999999999999999996
No 8
>3iz5_E 60S ribosomal protein L11 (L5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_E 3izc_E 3izs_E 3o58_K 3o5h_K 3u5e_J 3u5i_J 4b6a_J 1s1i_J 2noq_H 3j0q_k 3jyw_J
Probab=24.67 E-value=16 Score=31.16 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=25.4
Q ss_pred ccccccCCCchhhhhhhhhhhccccccCC
Q psy6437 225 LKNSSSNGKSDYFLSLRKHIITEKIEYDV 253 (254)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (254)
++.++++|.-+|=+++++|++= .|+||+
T Consensus 93 l~~~sFD~~GN~sfGI~E~i~F-ei~yD~ 120 (180)
T 3iz5_E 93 LLRRNFSDTGCFGFGIQEHIDL-GMKYDP 120 (180)
T ss_dssp CCSTTBCTTSCEEEECCTTSSS-CCSSSC
T ss_pred cCccccCCCceeeeccchheee-eccccc
Confidence 7788888889999999999988 899997
No 9
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ...
Probab=23.24 E-value=13 Score=31.53 Aligned_cols=28 Identities=36% Similarity=0.688 Sum_probs=23.5
Q ss_pred cccccCCCchhhhhhhhhhhccccccCC
Q psy6437 226 KNSSSNGKSDYFLSLRKHIITEKIEYDV 253 (254)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (254)
+..+++|..+|-++++++++=..||||+
T Consensus 121 ~~~sfd~~GN~sfGi~e~~~FPEi~yD~ 148 (182)
T 1mji_A 121 NPNSFDGRGNYNLGLREQLIFPEITYDM 148 (182)
T ss_dssp CTTCBCSSSEEEEEECSCEECSSCEECC
T ss_pred CccccCCCceEEEecchhhcCCcccccc
Confidence 3445667779999999999999999996
No 10
>3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=20.72 E-value=18 Score=31.70 Aligned_cols=28 Identities=18% Similarity=0.432 Sum_probs=23.5
Q ss_pred cccccCCCchhhhhhhhhhhccccccCC
Q psy6437 226 KNSSSNGKSDYFLSLRKHIITEKIEYDV 253 (254)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (254)
+..+++|..+|-++++++++=..||||+
T Consensus 133 ~~~sFD~~GN~sfGi~e~~~FPEI~yD~ 160 (220)
T 3bbo_H 133 NPNSFDGHGNYSVGFREQSVFPEIKPEI 160 (220)
T ss_dssp CCSCCCSSSEEEEEECSCCCCSSCCTTS
T ss_pred CccccCCCceEEEeccccccCCCcccCc
Confidence 3445677779999999999998999996
Done!