Query psy6437
Match_columns 254
No_of_seqs 154 out of 494
Neff 4.9
Searched_HMMs 13730
Date Fri Aug 16 17:54:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6437.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6437hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qamc2 b.40.4.5 (C:61-124) N- 46.8 2.6 0.00019 28.6 0.7 9 246-254 17-25 (64)
2 d2zjra2 b.40.4.5 (A:33-127) N- 44.6 2.5 0.00018 30.8 0.3 9 246-254 47-55 (95)
3 d1rl2a2 b.40.4.5 (A:60-125) N- 37.9 2.5 0.00018 28.9 -0.6 9 246-254 18-26 (66)
4 d2j01d2 b.40.4.5 (D:2-126) N-t 29.7 6.4 0.00046 29.9 0.5 9 246-254 78-86 (125)
5 d1vqoa2 b.40.4.5 (A:1-90) N-te 21.4 8.9 0.00065 27.3 -0.1 8 247-254 43-50 (90)
6 d1iq4a_ d.77.1.1 (A:) Ribosoma 14.2 27 0.002 27.3 1.2 40 214-253 100-145 (179)
7 d1vqod1 d.77.1.1 (D:10-174) Ri 10.4 32 0.0023 26.7 0.5 33 219-253 80-112 (165)
8 d1mjia_ d.77.1.1 (A:) Ribosoma 9.5 37 0.0027 26.6 0.5 39 215-253 102-146 (180)
9 d2zjrd1 d.77.1.1 (D:3-179) Rib 7.6 60 0.0044 25.0 1.0 39 215-253 99-143 (177)
10 d1xmeb2 f.17.2.1 (B:3-36) Bact 7.4 1.4E+02 0.01 16.9 2.4 13 118-130 21-33 (34)
No 1
>d2qamc2 b.40.4.5 (C:61-124) N-terminal domain of ribosomal protein L2 {Escherichia coli [TaxId: 562]}
Probab=46.80 E-value=2.6 Score=28.58 Aligned_cols=9 Identities=56% Similarity=1.007 Sum_probs=7.6
Q ss_pred ccccccCCC
Q psy6437 246 TEKIEYDVN 254 (254)
Q Consensus 246 ~~~~~~~~~ 254 (254)
-+.||||||
T Consensus 17 V~~IEYDPn 25 (64)
T d2qamc2 17 VERLEYDPN 25 (64)
T ss_dssp CCCCCCCSS
T ss_pred EEEEEeCCC
Confidence 368999998
No 2
>d2zjra2 b.40.4.5 (A:33-127) N-terminal domain of ribosomal protein L2 {Deinococcus radiodurans [TaxId: 1299]}
Probab=44.64 E-value=2.5 Score=30.84 Aligned_cols=9 Identities=56% Similarity=0.804 Sum_probs=7.7
Q ss_pred ccccccCCC
Q psy6437 246 TEKIEYDVN 254 (254)
Q Consensus 246 ~~~~~~~~~ 254 (254)
-|.||||||
T Consensus 47 V~~IeYDPn 55 (95)
T d2zjra2 47 VAAIEYDPN 55 (95)
T ss_dssp EEEEECCTT
T ss_pred EEEEEEcCC
Confidence 468999998
No 3
>d1rl2a2 b.40.4.5 (A:60-125) N-terminal domain of ribosomal protein L2 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=37.92 E-value=2.5 Score=28.89 Aligned_cols=9 Identities=56% Similarity=0.822 Sum_probs=7.5
Q ss_pred ccccccCCC
Q psy6437 246 TEKIEYDVN 254 (254)
Q Consensus 246 ~~~~~~~~~ 254 (254)
-|.||||||
T Consensus 18 V~~IEYDPn 26 (66)
T d1rl2a2 18 VATIEYDPN 26 (66)
T ss_dssp EEEEEEEGG
T ss_pred EEEEEeCCC
Confidence 468999998
No 4
>d2j01d2 b.40.4.5 (D:2-126) N-terminal domain of ribosomal protein L2 {Thermus thermophilus [TaxId: 274]}
Probab=29.66 E-value=6.4 Score=29.88 Aligned_cols=9 Identities=56% Similarity=0.804 Sum_probs=7.2
Q ss_pred ccccccCCC
Q psy6437 246 TEKIEYDVN 254 (254)
Q Consensus 246 ~~~~~~~~~ 254 (254)
-|.||||||
T Consensus 78 V~~IeYDPn 86 (125)
T d2j01d2 78 VAAIEYDPN 86 (125)
T ss_dssp EEECCCCTT
T ss_pred EEEEEecCC
Confidence 358999998
No 5
>d1vqoa2 b.40.4.5 (A:1-90) N-terminal domain of ribosomal protein L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=21.41 E-value=8.9 Score=27.27 Aligned_cols=8 Identities=38% Similarity=0.277 Sum_probs=6.9
Q ss_pred cccccCCC
Q psy6437 247 EKIEYDVN 254 (254)
Q Consensus 247 ~~~~~~~~ 254 (254)
++||||||
T Consensus 43 ~~IeyDP~ 50 (90)
T d1vqoa2 43 VDIEHDPA 50 (90)
T ss_dssp EEEEEETT
T ss_pred EEEEecCC
Confidence 48999997
No 6
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=14.16 E-value=27 Score=27.28 Aligned_cols=40 Identities=23% Similarity=0.506 Sum_probs=30.6
Q ss_pred HHHHhhcccccccc------cccCCCchhhhhhhhhhhccccccCC
Q psy6437 214 IELLHNKVCTHLKN------SSSNGKSDYFLSLRKHIITEKIEYDV 253 (254)
Q Consensus 214 ~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (254)
+|-+..-+.|.+|. ++.+|..+|=++++++++=..|+||+
T Consensus 100 L~rli~ivlPrirdf~g~~~~~fd~~gn~sfGi~e~~~fPei~yd~ 145 (179)
T d1iq4a_ 100 LDKLISVSLPRARDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDK 145 (179)
T ss_dssp HHHHHHTTGGGSTTCCCBCSSCBCSSSEEEEEESCGGGSTTCCGGG
T ss_pred HHHHHHhccchhcccccccchhcccccceeechhHhhccccccccc
Confidence 34445556777776 46677788999999999888889986
No 7
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=10.44 E-value=32 Score=26.71 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=12.1
Q ss_pred hcccccccccccCCCchhhhhhhhhhhccccccCC
Q psy6437 219 NKVCTHLKNSSSNGKSDYFLSLRKHIITEKIEYDV 253 (254)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (254)
..+.|..|. .+|..+|=++++++++=-.|+||+
T Consensus 80 ~~~~~~~k~--FD~~GN~sfGi~e~~~FPei~~d~ 112 (165)
T d1vqod1 80 PLAELATSQ--FDDTGNFSFGVEEHTEFPSQEYDP 112 (165)
T ss_dssp GGSCCCSTT--BCSSSCEEEC--------------
T ss_pred ccccCCccc--cCCceeEEeCchhheecccccccc
Confidence 344555554 456568999999999977888886
No 8
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus [TaxId: 274]}
Probab=9.48 E-value=37 Score=26.58 Aligned_cols=39 Identities=33% Similarity=0.577 Sum_probs=28.9
Q ss_pred HHHhhccccccc------ccccCCCchhhhhhhhhhhccccccCC
Q psy6437 215 ELLHNKVCTHLK------NSSSNGKSDYFLSLRKHIITEKIEYDV 253 (254)
Q Consensus 215 d~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (254)
|-+..-++|.+| .++.+|..+|-++++++++=-.|+||+
T Consensus 102 ~rli~i~lprirdf~g~~~~sfd~~Gn~sfGi~e~~~FPEi~~d~ 146 (180)
T d1mjia_ 102 EKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDM 146 (180)
T ss_dssp HHHHHTTTTTCSSCCCBCTTCBCSSSEEEEEECSCEECSSCEECC
T ss_pred HHHHHHHhhheeccccCCcccccCceeEEecchheeecccccccc
Confidence 334455666655 456788889999999999877788885
No 9
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus radiodurans [TaxId: 1299]}
Probab=7.64 E-value=60 Score=25.03 Aligned_cols=39 Identities=26% Similarity=0.501 Sum_probs=29.0
Q ss_pred HHHhhccccccccc------ccCCCchhhhhhhhhhhccccccCC
Q psy6437 215 ELLHNKVCTHLKNS------SSNGKSDYFLSLRKHIITEKIEYDV 253 (254)
Q Consensus 215 d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (254)
|-+..-+.|.+|.+ +.+|..+|-++++++++=..|+||+
T Consensus 99 ~kli~~vlprirdf~G~~~~~fd~~gn~~fGi~e~~~FpEi~~d~ 143 (177)
T d2zjrd1 99 EKLINIGLPRIRDFRGINPNAFDGRGNYNLGIKEQLIFPEITYDM 143 (177)
T ss_dssp HHHHHTTTTSCTTCCCCCCSCCSTTTCCEECCCCSTTCSSCCGGG
T ss_pred HHHHHhhcchhcccccccccccCcCceEEechhhhhccccccccc
Confidence 33344577777763 5677788999999999887888885
No 10
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=7.41 E-value=1.4e+02 Score=16.86 Aligned_cols=13 Identities=31% Similarity=0.697 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q psy6437 118 LCTLFYLSTILIY 130 (254)
Q Consensus 118 La~lF~Llal~~y 130 (254)
|+.+|.++++..|
T Consensus 21 lamlfvfialiay 33 (34)
T d1xmeb2 21 LAMLFVFIALIAY 33 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 4455555555544
Done!