RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6437
(254 letters)
>gnl|CDD|221995 pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein
mannosyltransferase. This family contains members that
are not captured by pfam02366.
Length = 158
Score = 33.7 bits (78), Expect = 0.037
Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
Query: 61 SFHLINNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVSGIVGRADLLCT 120
+ L + L L+Y+L+ + RRA L A L+ AV P+ + ++ D
Sbjct: 23 AVRLPSALAGLLSILLLYLLARRLF-GRRAALLAVLLLAVTPL--FVLGSVLFTPDAPLL 79
Query: 121 LFYLSTILIYIKWIKLGGREQYKYNI------KISIMNKYNNIY 158
LF+ + + ++ + + K+ + + ++KY
Sbjct: 80 LFWALALYFLYRALE---KNKLKWWLLAGVFAGLGFLSKYTAAL 120
>gnl|CDD|224720 COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related
glycosyltransferases of PMT family [Cell envelope
biogenesis, outer membrane].
Length = 535
Score = 32.1 bits (73), Expect = 0.28
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 64 LINNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVSGIVGRA---DLLCT 120
L + L + LVY L+ + A L A+LI + P+ ++GR D
Sbjct: 88 LPSALAGALTALLVYWLAKRLFGRLAALL-AALILLLTPL-----FFLIGRLALLDAALA 141
Query: 121 LFYLSTILIYIKWIKLGGREQYKY 144
F + + ++ G+ ++
Sbjct: 142 FFLTLALALLYLALRARGKLKWLL 165
>gnl|CDD|220589 pfam10129, OpgC_C, OpgC protein. This domain, found in various
hypothetical and OpgC prokaryotic proteins. It is likely
to act as an acyltransferase enzyme.
Length = 358
Score = 28.3 bits (64), Expect = 3.8
Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 16/65 (24%)
Query: 68 LLH-SAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVSGIVGRADLLCTLFYLST 126
LLH A+ YLV L RA + LI ++GR L F
Sbjct: 271 LLHFLALAYLVARLVPAGWRRLRAPVLRPLI-------------LLGRHSLPV--FCAGV 315
Query: 127 ILIYI 131
+L
Sbjct: 316 VLSLA 320
>gnl|CDD|227829 COG5542, COG5542, Predicted integral membrane protein [Function
unknown].
Length = 420
Score = 28.1 bits (63), Expect = 4.4
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 64 LINNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVSGIVGRADLLCTLFY 123
L +N+ Y +Y ++ FA+++ + P S I G+ + L TL
Sbjct: 121 LFSNIADFVAAYFLYKITKLRYGLGSMARFATILVILSPSVI-YNSAIWGQTESLFTLLS 179
Query: 124 LSTILIYIK 132
+ I +
Sbjct: 180 ILAIYFFSI 188
>gnl|CDD|220251 pfam09462, Mus7, Mus7/MMS22 family. This family includes a
conserved region from the Mus7 protein. Mus7 is involved
in the repair of replication-associated DNA damage in
the fission yeast Schizosaccharomyces pombe. Mus7
functions in the same pathway as Mus81, a subunit of the
Mus81-Eme1 structure-specific endonuclease, which has
been implicated in the repair of the
replication-associated DNA damage. The MMS22 proteins
are involved in repairing double-stranded DNA breaks
created by the cleavage reaction of topoisomerase II.
Length = 603
Score = 28.3 bits (63), Expect = 4.9
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 16/99 (16%)
Query: 36 SHGSYRPLTVLTFRLNYLACGLKPRSFHLINNLLHSAITYLVYILSSYVLPNRRARLFAS 95
S+ S L L R + LA K FH+ LL AI+ L Y ++ +
Sbjct: 101 SYKSPPFLDELDRRPS-LAIEPKDTCFHIFLKLLALAISGLRY-------SKKKIKRLVE 152
Query: 96 LIFAVH--------PIHTEAVSGIVGRADLLCTLFYLST 126
+ H PI ++ + R +LL TL + S
Sbjct: 153 RLTPNHDRQYTKEQPISQSDLAALRNRHNLLITLAWASP 191
>gnl|CDD|227334 COG5001, COG5001, Predicted signal transduction protein containing
a membrane domain, an EAL and a GGDEF domain [Signal
transduction mechanisms].
Length = 663
Score = 28.3 bits (63), Expect = 5.1
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 81 SSYVLPNRRARLFASLIFAVHPIHTEAVSGIVGRAD 116
+ Y L R ++ AS+ A P + + RAD
Sbjct: 337 APYDLRGVRVQVGASIGIAPFPSGADTSEQLFERAD 372
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
delta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 517
Score = 28.2 bits (63), Expect = 5.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 220 KVCTHLKNSSSNGKSDYFLSLRKHIITEKIEYDV 253
KV T L+N +NG+ +S+RK IT +E V
Sbjct: 453 KVVTELRNRHANGEKTAGISVRKGGITNMLEEHV 486
>gnl|CDD|227317 COG4984, COG4984, Predicted membrane protein [Function unknown].
Length = 644
Score = 28.3 bits (63), Expect = 5.3
Identities = 25/133 (18%), Positives = 36/133 (27%), Gaps = 22/133 (16%)
Query: 22 FNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFHLINNLLHSAITYLVYILS 81
F W + ++ F R F N + L+ ILS
Sbjct: 347 FEKADWFD-------------IAIVMFIAGGFILYFIFRLFDGEN----DSYLALMAILS 389
Query: 82 SYVLPNRRARLFASLIFAVHPIHTEAVSGIVGRADLLCTLFYLS--TILIYIKWIKLGGR 139
+ R + F I A+ I A +G L L+Y WI GG
Sbjct: 390 IFDYQLRSSNWFRFPIAALFII---AFLVYIGFFLLRWYLYYEEHLGQFYLQIWIIAGGL 446
Query: 140 EQYKYNIKISIMN 152
Y +
Sbjct: 447 LLYFFFSLSLERP 459
>gnl|CDD|147857 pfam05933, Fun_ATP-synt_8, Fungal ATP synthase protein 8 (A6L).
This family consists of fungus specific ATP synthase
protein 8 (EC:3.6.3.14). The family may be related to
the ATP synthase protein 8 found in other eukaryotes
pfam00895.
Length = 47
Score = 25.3 bits (56), Expect = 5.9
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 62 FHLINNLLHS--AITYLVYILSSYVLPNRRARLFASLIF 98
F+ IN ++ + I+ L+Y+ S Y+LP R RL+ S +F
Sbjct: 7 FYFINQIVFTFAIISILLYLFSKYILP-RIVRLYVSRLF 44
>gnl|CDD|236909 PRK11424, PRK11424, DNA-binding transcriptional activator TdcR;
Provisional.
Length = 114
Score = 26.9 bits (59), Expect = 5.9
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 120 TLFYLSTILIYIKWIKLGGR-------EQYKYNIKISIMNKYNNIYCHQATTSTYNLCCH 172
T+FY I+ Y+ K G R + Y+ ++++M+K++N ++ ++ N H
Sbjct: 5 TIFYGDNIIRYVVNTKKGLRPYFKQLPDNYQAKFELNLMSKFSNFIINKPFSAINNAARH 64
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase. This model
represents tryptophanyl-tRNA synthetase. Some members of
the family have a pfam00458 domain amino-terminal to the
region described by this model [Protein synthesis, tRNA
aminoacylation].
Length = 327
Score = 27.3 bits (61), Expect = 7.5
Identities = 13/64 (20%), Positives = 20/64 (31%)
Query: 31 ITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFHLINNLLHSAITYLVYILSSYVLPNRRA 90
IT + +YLA GL P + + L ++LS V
Sbjct: 46 ITVKQTDPDALRKAREELAADYLAVGLDPEKTFIFLQSDYPEHYELAWLLSCQVTFGELK 105
Query: 91 RLFA 94
R+
Sbjct: 106 RMTQ 109
>gnl|CDD|216998 pfam02366, PMT, Dolichyl-phosphate-mannose-protein
mannosyltransferase. This is a family of
Dolichyl-phosphate-mannose-protein mannosyltransferase
proteins EC:2.4.1.109. These proteins are responsible
for O-linked glycosylation of proteins, they catalyze
the reaction:- Dolichyl phosphate D-mannose + protein
<=> dolichyl phosphate + O-D-mannosyl-protein. Also in
this family is the Drosophila rotated abdomen protein
which is a putative mannosyltransferase. This family
appears to be distantly related to pfam02516 (A Bateman
pers. obs.).
Length = 244
Score = 27.3 bits (61), Expect = 7.8
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 61 SFHLINNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVSGIVGRADLL-- 118
S L + LL S LVY+ + + +R L A+L+ + + R LL
Sbjct: 84 SMRLFSALLGSLTVPLVYLTALELGFSRLTALLAALLVILENSFI-----TLSRYILLDS 138
Query: 119 -CTLFYLSTILIYIKWIKLGGR 139
F + ++K+ K
Sbjct: 139 PLLFFTTLAMYCFVKFEKAPFS 160
>gnl|CDD|152536 pfam12101, DUF3577, Protein of unknown function (DUF3577). This
family of proteins is functionally uncharacterized. This
protein is found in bacteria. Proteins in this family
are typically between 143 to 307 amino acids in length.
Length = 138
Score = 26.5 bits (59), Expect = 9.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 128 LIYIKWIKLGGREQYK 143
LI I WIK+ G YK
Sbjct: 113 LIKIDWIKVDGELVYK 128
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.137 0.418
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,578,092
Number of extensions: 1143251
Number of successful extensions: 1319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1318
Number of HSP's successfully gapped: 28
Length of query: 254
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 159
Effective length of database: 6,723,972
Effective search space: 1069111548
Effective search space used: 1069111548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.0 bits)