RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6437
(254 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.10
Identities = 25/220 (11%), Positives = 70/220 (31%), Gaps = 56/220 (25%)
Query: 6 ILTNPDVQLKTPVGDLFNNDY-WGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFHL 64
+L+ + ++ V ++ +Y + + SP + + R +
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKF---LMSP-------------IKTEQRQPSMMTRMYIE 114
Query: 65 INNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTE---AVSGIVG-------- 113
+ L++ + + Y + R + + L A+ + + G++G
Sbjct: 115 QRDRLYND----NQVFAKYNVS--RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 114 ---RADLLCTLFYLSTILIYIKWIKLGGREQYKYNIKISIMNKYNNIYCHQATTSTYNLC 170
+ + I+ W+ L N +++ + +Q + +
Sbjct: 169 DVCLSYKVQCKMDFK---IF--WLNLK-----NCNSPETVLEMLQKL-LYQIDPNWTSRS 217
Query: 171 CHEKDSSHTKKDTICAVMRRTALAGAAMISKETGVTVLLI 210
H + + +I A +RR ++ + LL+
Sbjct: 218 DHSSNIKL-RIHSIQAELRR-------LLKSKPYENCLLV 249
Score = 31.0 bits (69), Expect = 0.49
Identities = 29/176 (16%), Positives = 53/176 (30%), Gaps = 59/176 (33%)
Query: 2 LSRAILTNPDVQLKTPVGDLF---NNDYWGTPITSPNSHGSY------RPLTVLTFRLNY 52
L R+I+ + ++ DL + Y+ SH + P + FR+ +
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYF-------YSHIGHHLKNIEHPERMTLFRMVF 497
Query: 53 L----------ACGLKPRSFHLINNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHP 102
L + I N L Y YI + P
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN------------------DP 539
Query: 103 IHTEAVSGIVGRADLLCTLFYLSTILIYIKWIKLGGREQYKYNIKISIMNKYNNIY 158
+ V+ +L L + LI K+ L ++I++M + I+
Sbjct: 540 KYERLVN------AILDFLPKIEENLICSKYTDL---------LRIALMAEDEAIF 580
Score = 29.1 bits (64), Expect = 1.7
Identities = 49/291 (16%), Positives = 81/291 (27%), Gaps = 87/291 (29%)
Query: 3 SRAILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLK--PR 60
+ +LT Q V D + T I+ + + P V + L YL C + PR
Sbjct: 266 CKILLTTRFKQ----VTDFLSAAT-TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 61 SFHLINNLLHSAI------------TYLVY--------ILSSY-VL-PNRRARLFASL-I 97
N S I + I SS VL P ++F L +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 98 FAVH-PIHTEAVSGIVGRADLLCTLFYLSTILIYIKWIKLGGREQYKYNIKISIMNKYNN 156
F I + L + W + + + ++NK
Sbjct: 381 FPPSAHI-PTIL---------LSLI-----------WFDV------IKSDVMVVVNK--- 410
Query: 157 IYCH-------QATTSTYNLCCHEKDSSHTKKDTICAVMRRTALAGAAMISKETGVTVLL 209
H Q ST ++ K + R+ + + ++
Sbjct: 411 --LHKYSLVEKQPKESTISI--PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 210 IC----ICIELLHNKVCTHLKNSSSNGKSDYF----LSLRKHIITEKIEYD 252
+ H HLKN + F L R + +KI +D
Sbjct: 467 PYLDQYFYSHIGH-----HLKNIEHPERMTLFRMVFLDFR--FLEQKIRHD 510
Score = 27.9 bits (61), Expect = 4.1
Identities = 39/266 (14%), Positives = 70/266 (26%), Gaps = 80/266 (30%)
Query: 2 LSRAILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRS 61
++ + + VQ K +W + N + L +L L + RS
Sbjct: 166 VALDVCLSYKVQCKMD-----FKIFW---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 62 FHLINN--LLHSAITYLVYILSSYVLPNRRARLFASLIFAV-----HPIHTEAVSGIVGR 114
H N +HS L +L S N L+ V + A
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYEN-------CLL--VLLNVQNAKAWNAF------ 262
Query: 115 ADLLC-TLFYLSTILIYIKWIKLGGREQYKYNIKISIMNKYNNIYCHQATTSTYNLCCHE 173
+L C L L+T R + + + +T ++
Sbjct: 263 -NLSCKIL--LTT------------RF-------KQVTDFLSA-------ATTTHISLDH 293
Query: 174 KDSSHTKKDTI-----CAVMRRTALAGAAMISKETGVTVLLICICIELLHNKVCTHLKNS 228
+ T + R L + I E + + + T
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREV-----LTTNPRRLSIIAESIRDGLAT----- 343
Query: 229 SSNGKSDYFLSLRKHIITEKIEYDVN 254
D + + +T IE +N
Sbjct: 344 -----WDNWKHVNCDKLTTIIESSLN 364
>2kjq_A DNAA-related protein; solution structure, NESG, structural
genomics, PSI-2, protei structure initiative; NMR
{Neisseria meningitidis serogroup B}
Length = 149
Score = 27.6 bits (62), Expect = 2.2
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 62 FHLINNLLHSAITYLVYILSSYVLPNR-------RARLFASLIFAVHP 102
F + N +S +L+ L S P + R R+ L++ V P
Sbjct: 104 FSIFNRFRNSGKGFLL--LGSEYTPQQLVIREDLRTRMAYCLVYEVKP 149
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 27.6 bits (61), Expect = 4.2
Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 1/89 (1%)
Query: 6 ILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKP-RSFHL 64
L +Q V + I N + +ACG P +F
Sbjct: 96 FLFTKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIF 155
Query: 65 INNLLHSAITYLVYILSSYVLPNRRARLF 93
N + + + + + ++ +F
Sbjct: 156 TNLEYIAELYPDILRIEKKISCSQIKSIF 184
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.418
Gapped
Lambda K H
0.267 0.0596 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,749,399
Number of extensions: 207464
Number of successful extensions: 505
Number of sequences better than 10.0: 1
Number of HSP's gapped: 503
Number of HSP's successfully gapped: 8
Length of query: 254
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 163
Effective length of database: 4,160,982
Effective search space: 678240066
Effective search space used: 678240066
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.6 bits)