Query psy6439
Match_columns 114
No_of_seqs 101 out of 522
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 17:56:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qai_A V-type ATP synthase sub 100.0 5.7E-29 1.9E-33 173.2 5.6 91 10-114 1-94 (111)
2 3aon_B V-type sodium ATPase su 99.9 7.4E-29 2.5E-33 173.4 4.7 93 9-114 2-95 (115)
3 2d00_A V-type ATP synthase sub 99.9 1.2E-28 4.1E-33 170.7 3.1 93 9-114 3-100 (109)
4 2i4r_A V-type ATP synthase sub 99.9 9.4E-27 3.2E-31 159.8 6.9 97 2-110 2-100 (102)
5 2ov6_A V-type ATP synthase sub 99.9 4.1E-27 1.4E-31 160.8 3.6 90 10-114 1-92 (101)
6 2nu8_B SCS-beta, succinyl-COA 79.6 6.3 0.00022 31.4 7.3 83 10-98 257-352 (388)
7 3ufx_B Succinyl-COA synthetase 76.5 8.7 0.0003 30.7 7.2 83 10-98 248-343 (397)
8 3i09_A Periplasmic branched-ch 75.6 15 0.00051 27.3 8.0 82 8-95 3-102 (375)
9 3n0w_A ABC branched chain amin 74.5 16 0.00053 27.3 7.9 83 8-96 5-105 (379)
10 4f06_A Extracellular ligand-bi 73.9 15 0.0005 27.6 7.6 83 10-98 6-106 (371)
11 3sg0_A Extracellular ligand-bi 73.9 24 0.00082 25.9 8.8 87 6-96 24-121 (386)
12 2fp4_B Succinyl-COA ligase [GD 72.7 9.7 0.00033 30.5 6.6 83 10-98 264-359 (395)
13 3lkb_A Probable branched-chain 72.3 24 0.00081 26.3 8.4 83 6-94 4-104 (392)
14 3td9_A Branched chain amino ac 71.1 28 0.00096 25.6 8.7 87 7-96 14-113 (366)
15 3eaf_A ABC transporter, substr 69.0 33 0.0011 25.7 8.6 81 9-93 4-104 (391)
16 3jy6_A Transcriptional regulat 68.6 24 0.00083 24.9 7.5 86 6-94 4-91 (276)
17 3lop_A Substrate binding perip 68.4 31 0.0011 25.3 8.3 82 8-95 4-106 (364)
18 4gnr_A ABC transporter substra 67.1 34 0.0012 25.0 10.5 85 8-98 6-109 (353)
19 4evq_A Putative ABC transporte 66.5 24 0.00081 25.9 7.2 82 8-95 15-113 (375)
20 3iwt_A 178AA long hypothetical 66.3 26 0.00088 24.2 7.0 42 24-73 49-90 (178)
21 3n0x_A Possible substrate bind 62.0 45 0.0015 24.8 8.1 80 9-94 4-103 (374)
22 2ftc_A Mitochondrial ribosomal 61.3 33 0.0011 24.7 7.0 59 6-81 29-88 (189)
23 3j21_A 50S ribosomal protein L 60.8 17 0.00058 26.8 5.4 67 4-85 54-124 (216)
24 3qoy_A 50S ribosomal protein L 60.6 19 0.00067 27.1 5.8 63 4-84 70-133 (242)
25 3hut_A Putative branched-chain 57.8 52 0.0018 23.9 9.1 82 8-95 3-103 (358)
26 3u42_A 50S ribosomal protein L 56.4 36 0.0012 25.4 6.6 65 4-85 67-131 (229)
27 3i45_A Twin-arginine transloca 55.2 51 0.0017 24.4 7.4 83 8-96 4-105 (387)
28 2wwq_5 50S ribosomal protein L 51.6 26 0.0009 26.2 5.2 63 4-84 67-129 (234)
29 1i2a_A 50S ribosomal protein L 50.9 36 0.0012 25.0 5.8 71 4-92 52-132 (219)
30 3uf6_A LMO1369 protein; struct 50.9 54 0.0019 25.0 7.0 81 9-101 43-131 (291)
31 2pju_A Propionate catabolism o 48.6 13 0.00045 27.5 3.1 52 9-71 106-161 (225)
32 2csu_A 457AA long hypothetical 46.8 58 0.002 26.2 6.9 59 39-97 343-413 (457)
33 3k4h_A Putative transcriptiona 45.2 32 0.0011 24.3 4.6 86 7-94 6-98 (292)
34 3u26_A PF00702 domain protein; 44.8 31 0.0011 23.1 4.4 25 10-34 173-199 (234)
35 2zkr_5 60S ribosomal protein L 43.1 31 0.001 25.3 4.3 69 4-90 52-130 (212)
36 3dv9_A Beta-phosphoglucomutase 41.6 40 0.0014 22.7 4.6 25 10-34 183-208 (247)
37 4eyg_A Twin-arginine transloca 41.0 53 0.0018 23.9 5.4 83 7-95 4-103 (368)
38 3l49_A ABC sugar (ribose) tran 40.5 92 0.0031 21.8 7.0 87 7-94 3-92 (291)
39 2q5c_A NTRC family transcripti 40.5 15 0.00053 26.2 2.3 57 9-76 94-154 (196)
40 1mzp_A 50S ribosomal protein L 39.9 47 0.0016 24.3 4.9 64 4-85 56-127 (217)
41 2qh8_A Uncharacterized protein 39.5 1E+02 0.0036 22.1 7.9 83 8-94 7-96 (302)
42 3cs3_A Sugar-binding transcrip 39.5 96 0.0033 21.7 6.6 82 9-90 118-204 (277)
43 3d8u_A PURR transcriptional re 39.4 45 0.0015 23.2 4.6 45 48-94 44-88 (275)
44 2pjk_A 178AA long hypothetical 38.8 56 0.0019 22.9 5.0 31 41-73 60-90 (178)
45 3jvd_A Transcriptional regulat 38.2 1.2E+02 0.0039 22.2 7.3 87 8-95 173-266 (333)
46 3l6u_A ABC-type sugar transpor 38.0 81 0.0028 22.1 5.9 87 7-94 6-95 (293)
47 3kzx_A HAD-superfamily hydrola 36.5 52 0.0018 22.1 4.5 25 11-35 179-204 (231)
48 3bbo_D Ribosomal protein L1; l 36.5 21 0.00073 28.6 2.7 64 4-85 181-244 (352)
49 3snr_A Extracellular ligand-bi 36.2 71 0.0024 23.0 5.4 86 6-97 4-102 (362)
50 2i6x_A Hydrolase, haloacid deh 36.0 27 0.00092 23.2 2.8 40 10-61 168-208 (211)
51 3h5l_A Putative branched-chain 35.6 1.2E+02 0.0041 22.7 6.8 82 7-94 12-113 (419)
52 3hcw_A Maltose operon transcri 35.5 59 0.002 23.2 4.8 87 6-94 4-97 (295)
53 1y5e_A Molybdenum cofactor bio 34.8 64 0.0022 22.2 4.8 31 41-73 51-81 (169)
54 3e3m_A Transcriptional regulat 34.7 98 0.0033 22.8 6.1 86 7-94 68-155 (355)
55 3kjx_A Transcriptional regulat 34.7 1.2E+02 0.004 22.1 6.5 86 7-94 66-153 (344)
56 3l07_A Bifunctional protein fo 34.3 65 0.0022 24.8 5.1 53 12-71 39-99 (285)
57 3egc_A Putative ribose operon 34.2 51 0.0017 23.3 4.3 85 7-94 6-93 (291)
58 3hcw_A Maltose operon transcri 34.2 90 0.0031 22.2 5.6 83 8-90 130-219 (295)
59 2pib_A Phosphorylated carbohyd 33.8 60 0.002 21.1 4.3 23 10-32 158-181 (216)
60 1dbq_A Purine repressor; trans 33.7 1E+02 0.0035 21.5 5.8 87 7-94 5-93 (289)
61 1mkz_A Molybdenum cofactor bio 33.7 69 0.0024 22.2 4.8 25 48-72 53-77 (172)
62 2fep_A Catabolite control prot 33.7 98 0.0033 21.9 5.8 86 7-94 14-101 (289)
63 3qxg_A Inorganic pyrophosphata 33.4 65 0.0022 21.9 4.6 25 10-34 184-209 (243)
64 1pea_A Amidase operon; gene re 33.4 1.4E+02 0.0049 21.9 9.7 53 40-94 51-105 (385)
65 3p2o_A Bifunctional protein fo 33.3 63 0.0022 24.9 4.9 53 12-71 38-98 (285)
66 2pr7_A Haloacid dehalogenase/e 33.1 65 0.0022 19.6 4.2 39 10-60 92-131 (137)
67 2wm8_A MDP-1, magnesium-depend 33.0 67 0.0023 21.5 4.5 43 10-61 138-181 (187)
68 3gyb_A Transcriptional regulat 33.0 90 0.0031 21.8 5.4 83 8-90 117-203 (280)
69 3rst_A Signal peptide peptidas 32.9 79 0.0027 23.0 5.2 50 48-97 30-88 (240)
70 2hqr_A Putative transcriptiona 31.2 1E+02 0.0034 20.8 5.3 10 11-20 2-11 (223)
71 2is8_A Molybdopterin biosynthe 31.1 68 0.0023 21.9 4.3 26 48-73 46-71 (164)
72 4a5o_A Bifunctional protein fo 31.1 82 0.0028 24.3 5.2 53 12-71 40-100 (286)
73 2hcf_A Hydrolase, haloacid deh 30.9 63 0.0021 21.5 4.1 25 9-33 170-195 (234)
74 3h16_A TIR protein; bacteria T 30.1 41 0.0014 22.6 3.0 35 50-84 61-97 (154)
75 2a98_A Inositol 1,4,5-trisphos 29.6 46 0.0016 25.2 3.5 42 19-63 123-164 (259)
76 3smv_A S-(-)-azetidine-2-carbo 29.5 63 0.0022 21.4 3.9 26 9-34 172-199 (240)
77 2hz5_A Dynein light chain 2A, 29.4 29 0.001 22.9 2.1 25 49-73 11-36 (106)
78 1w2f_A Inositol-trisphosphate 29.3 44 0.0015 25.6 3.3 41 19-62 140-180 (276)
79 3bil_A Probable LACI-family tr 28.9 1.7E+02 0.0057 21.5 6.5 87 8-95 183-276 (348)
80 3ipc_A ABC transporter, substr 28.8 1.6E+02 0.0056 21.1 8.9 53 40-95 46-100 (356)
81 3huu_A Transcription regulator 28.6 68 0.0023 22.9 4.2 86 7-94 20-112 (305)
82 3kto_A Response regulator rece 28.6 1E+02 0.0036 18.8 4.9 56 9-75 6-61 (136)
83 3hp4_A GDSL-esterase; psychrot 28.4 1.1E+02 0.0039 19.8 5.0 13 9-21 2-14 (185)
84 3clk_A Transcription regulator 28.0 67 0.0023 22.7 4.0 86 7-94 6-94 (290)
85 2o20_A Catabolite control prot 27.4 1.8E+02 0.006 21.0 6.3 48 47-95 223-274 (332)
86 3rfq_A Pterin-4-alpha-carbinol 27.2 1.5E+02 0.0052 20.9 5.8 60 5-73 26-98 (185)
87 3tb6_A Arabinose metabolism tr 27.2 1.5E+02 0.005 20.6 5.7 84 9-94 15-105 (298)
88 2hk9_A Shikimate dehydrogenase 26.9 1.3E+02 0.0045 21.9 5.6 55 8-72 11-73 (275)
89 2aqx_A Predicted: inositol 1,4 26.7 55 0.0019 25.2 3.5 41 19-62 153-193 (289)
90 4frf_A Inositol polyphosphate 26.6 23 0.00078 26.8 1.3 43 21-64 118-164 (275)
91 3g85_A Transcriptional regulat 25.9 1.6E+02 0.0055 20.5 5.7 83 8-90 126-215 (289)
92 3jrn_A AT1G72930 protein; TIR 25.8 88 0.003 22.2 4.2 26 50-75 50-75 (176)
93 3bil_A Probable LACI-family tr 25.5 1.6E+02 0.0055 21.6 5.9 85 8-94 65-151 (348)
94 3hyn_A Putative signal transdu 25.2 91 0.0031 22.8 4.2 51 49-99 66-120 (189)
95 3brq_A HTH-type transcriptiona 25.1 1.7E+02 0.006 20.2 6.0 86 7-94 17-107 (296)
96 3c3k_A Alanine racemase; struc 25.0 1.8E+02 0.0061 20.3 6.6 84 7-94 6-92 (285)
97 3h5o_A Transcriptional regulat 25.0 98 0.0033 22.5 4.5 49 44-94 99-147 (339)
98 3hno_A Pyrophosphate-dependent 24.9 1.1E+02 0.0037 24.7 5.1 28 47-74 222-249 (419)
99 3e61_A Putative transcriptiona 24.8 1.7E+02 0.006 20.1 6.4 85 7-94 6-92 (277)
100 3j21_Z 50S ribosomal protein L 24.8 59 0.002 20.5 2.9 38 62-99 29-68 (99)
101 3o74_A Fructose transport syst 24.6 1.1E+02 0.0036 21.1 4.5 84 9-94 2-88 (272)
102 2rjo_A Twin-arginine transloca 24.3 1.8E+02 0.006 21.0 5.8 87 7-94 3-94 (332)
103 3dmy_A Protein FDRA; predicted 24.3 1.7E+02 0.0056 24.0 6.1 51 48-98 312-376 (480)
104 1pdo_A Mannose permease; phosp 24.1 1E+02 0.0036 20.2 4.2 30 44-73 36-67 (135)
105 3hs3_A Ribose operon repressor 24.0 1.6E+02 0.0054 20.6 5.4 80 7-94 8-91 (277)
106 1uuy_A CNX1, molybdopterin bio 23.8 95 0.0032 21.2 4.0 26 48-73 55-80 (167)
107 2p2s_A Putative oxidoreductase 23.7 2.2E+02 0.0076 20.9 6.6 39 56-97 58-99 (336)
108 3gdw_A Sigma-54 interaction do 23.6 87 0.003 21.1 3.7 56 12-73 7-72 (139)
109 3bbl_A Regulatory protein of L 23.6 1.9E+02 0.0066 20.2 6.3 49 47-95 168-223 (287)
110 3saj_A Glutamate receptor 1; r 23.5 2.3E+02 0.0077 21.0 7.2 84 7-94 8-97 (384)
111 1pqx_A Conserved hypothetical 23.4 47 0.0016 21.4 2.1 38 22-61 44-83 (91)
112 3lfh_A Manxa, phosphotransfera 23.0 1.4E+02 0.0047 20.1 4.7 57 11-73 5-70 (144)
113 2o20_A Catabolite control prot 23.0 1.5E+02 0.0051 21.5 5.2 86 7-94 61-148 (332)
114 2om6_A Probable phosphoserine 22.9 85 0.0029 20.7 3.5 25 9-33 175-201 (235)
115 3ct6_A PTS-dependent dihydroxy 22.5 1.4E+02 0.0047 19.9 4.6 21 65-85 3-25 (131)
116 1nvt_A Shikimate 5'-dehydrogen 22.4 75 0.0026 23.4 3.4 53 9-71 11-71 (287)
117 1jlj_A Gephyrin; globular alph 22.3 1E+02 0.0035 21.8 4.0 31 41-73 57-87 (189)
118 4eek_A Beta-phosphoglucomutase 22.2 1.2E+02 0.0043 20.6 4.4 25 10-34 186-211 (259)
119 2k1h_A Uncharacterized protein 22.2 99 0.0034 19.9 3.6 34 23-58 45-80 (94)
120 3k9c_A Transcriptional regulat 22.2 2.1E+02 0.0071 20.1 6.4 88 8-95 125-220 (289)
121 3mwd_B ATP-citrate synthase; A 21.9 1.7E+02 0.006 22.7 5.6 87 9-101 168-264 (334)
122 2x7x_A Sensor protein; transfe 21.5 2.3E+02 0.0079 20.3 7.7 87 7-94 4-93 (325)
123 2rgy_A Transcriptional regulat 21.5 1.2E+02 0.0041 21.4 4.3 38 55-94 59-96 (290)
124 1qpz_A PURA, protein (purine n 21.4 2.2E+02 0.0074 20.6 5.8 87 7-94 56-144 (340)
125 3iru_A Phoshonoacetaldehyde hy 21.1 1.1E+02 0.0038 20.8 4.0 25 10-34 187-212 (277)
126 3gx1_A LIN1832 protein; APC633 21.1 1.3E+02 0.0046 19.9 4.2 57 11-73 6-70 (130)
127 3qk7_A Transcriptional regulat 20.8 2.3E+02 0.0077 20.0 5.8 88 8-96 125-223 (294)
128 4ap9_A Phosphoserine phosphata 20.8 85 0.0029 20.2 3.1 23 9-31 150-173 (201)
129 3gv0_A Transcriptional regulat 20.7 1.2E+02 0.004 21.4 4.1 86 7-94 6-95 (288)
130 2pbq_A Molybdenum cofactor bio 20.7 1.2E+02 0.004 21.1 4.0 32 40-73 46-77 (178)
131 3mc1_A Predicted phosphatase, 20.7 1.1E+02 0.0038 20.2 3.8 25 10-34 160-185 (226)
132 1zxx_A 6-phosphofructokinase; 20.6 1.8E+02 0.0063 22.5 5.4 51 47-98 196-249 (319)
133 3k1z_A Haloacid dehalogenase-l 20.5 92 0.0031 21.8 3.5 25 10-34 179-205 (263)
134 2g2c_A Putative molybdenum cof 20.5 1.2E+02 0.0041 20.7 4.0 30 41-73 49-78 (167)
135 3g1w_A Sugar ABC transporter; 20.4 1.7E+02 0.0057 20.6 4.9 49 45-94 43-92 (305)
136 2b7e_A PRE-mRNA processing pro 20.4 33 0.0011 20.6 0.8 17 50-66 3-19 (59)
137 2yxb_A Coenzyme B12-dependent 20.2 2E+02 0.0069 19.4 5.1 54 20-86 38-94 (161)
138 1ivn_A Thioesterase I; hydrola 20.1 1.3E+02 0.0044 19.7 4.0 12 10-21 2-13 (190)
139 1qgu_B Protein (nitrogenase mo 20.0 2.1E+02 0.0073 23.3 6.0 46 8-62 359-408 (519)
No 1
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=99.95 E-value=5.7e-29 Score=173.23 Aligned_cols=91 Identities=33% Similarity=0.512 Sum_probs=77.9
Q ss_pred cEEEEEcchhHHHHHhhccccceeccCCCceee-ecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHH--HHHhhcC
Q psy6439 10 KLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLV-VDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIR--HCIDDHT 86 (114)
Q Consensus 10 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v-v~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~--d~i~~~~ 86 (114)
+|||||||+||++||||+|++++ ++ ++++|+.++++++|++++++++||||+||+++++.++ +.++
T Consensus 1 MKIaVIGD~Dtv~GFrLaGi~~~--------~v~~~~~t~~ee~~~~~~~l~~~~digIIlIte~ia~~i~~~~~i~--- 69 (111)
T 2qai_A 1 MKIVVMGDSDTVVGFRLAGVHEA--------YEYDESLESVERARNKLRELLERDDVGIILITERLAQRIGSLPEVK--- 69 (111)
T ss_dssp CEEEEEECHHHHHHHHHHTCSEE--------EECCSSHHHHHHHHHHHHHHHTCTTEEEEEEEHHHHHHHCSCCCCS---
T ss_pred CEEEEEECHHHHHHHHHcCCceE--------EEecCCCCCHHHHHHHHHHHhhCCCeEEEEEcHHHHhhcccccccC---
Confidence 58999999999999999999984 45 6777888999999999999999999999999999999 6666
Q ss_pred CCccEEEEcCCCCCCCCCCccchhhhcC
Q psy6439 87 QPIPAVLEIPSKDHPYDASKDSILRRAK 114 (114)
Q Consensus 87 ~~~P~Iv~IP~~~g~~~~~~d~i~~~~~ 114 (114)
.|+|++|||++|+++ ++++|.+|++
T Consensus 70 --~P~IleIPs~~g~~~-~~d~i~~~V~ 94 (111)
T 2qai_A 70 --FPIILQIPDKFGSIY-GEDILRDVVR 94 (111)
T ss_dssp --SSEEEEECTTC-------CTHHHHHH
T ss_pred --CCEEEEECCCCCCCc-hHHHHHHHHH
Confidence 899999999999998 9999999874
No 2
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=99.95 E-value=7.4e-29 Score=173.37 Aligned_cols=93 Identities=24% Similarity=0.366 Sum_probs=84.4
Q ss_pred CcEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhhcC-C
Q psy6439 9 GKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDDHT-Q 87 (114)
Q Consensus 9 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~~~-~ 87 (114)
++|||||||+||++||||+|+++ |++ ++++|++++|++++++ |||||+|||++++.+++.|++|+ +
T Consensus 2 ~mKiaVIGD~Dtv~GFrLaGie~--------~~v----~~~ee~~~~~~~l~~~-digIIlIte~ia~~i~~~i~~~~~~ 68 (115)
T 3aon_B 2 TYKIGVVGDKDSVSPFRLFGFDV--------QHG----TTKTEIRKTIDEMAKN-EYGVIYITEQCANLVPETIERYKGQ 68 (115)
T ss_dssp EEEEEEESCHHHHGGGGGGTCEE--------ECC----CSHHHHHHHHHHHHHT-TEEEEEEEHHHHTTCHHHHHHHHTS
T ss_pred ceEEEEEECHHHHHHHHHcCCeE--------EEe----CCHHHHHHHHHHHHhc-CceEEEEeHHHHHHhHHHHHHHhCC
Confidence 37999999999999999999976 434 2459999999999988 99999999999999999999996 5
Q ss_pred CccEEEEcCCCCCCCCCCccchhhhcC
Q psy6439 88 PIPAVLEIPSKDHPYDASKDSILRRAK 114 (114)
Q Consensus 88 ~~P~Iv~IP~~~g~~~~~~d~i~~~~~ 114 (114)
..|+|++|||++|+++.++|+|.+|++
T Consensus 69 ~~P~IveIPs~~g~~~~~~~~i~~~V~ 95 (115)
T 3aon_B 69 LTPAIILIPSHQGTLGIGLEEIQNSVE 95 (115)
T ss_dssp SSCEEEEECBTTBCCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCccHHHHHHHHH
Confidence 699999999999999889999999874
No 3
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=99.94 E-value=1.2e-28 Score=170.68 Aligned_cols=93 Identities=15% Similarity=0.307 Sum_probs=85.2
Q ss_pred CcEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhhcC--
Q psy6439 9 GKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDDHT-- 86 (114)
Q Consensus 9 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~~~-- 86 (114)
++|||||||+||++||||+|+++ |++ ++++|++++|+++++++|||||++|+++++.+++.+++|+
T Consensus 3 ~mkiaVIgD~dtv~GFrLaGi~~--------~~v----~~~ee~~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~~~ 70 (109)
T 2d00_A 3 PVRMAVIADPETAQGFRLAGLEG--------YGA----SSAEEAQSLLETLVERGGYALVAVDEALLPDPERAVERLMRG 70 (109)
T ss_dssp CCCEEEEECHHHHHHHHHTTSEE--------EEC----SSHHHHHHHHHHHHHHCCCSEEEEETTTCSCHHHHHHHHTTC
T ss_pred ccEEEEEeCHHHHHHHHHcCCeE--------EEe----CCHHHHHHHHHHHhhCCCeEEEEEeHHHHHhhHHHHHHHHhC
Confidence 68999999999999999999976 434 2459999999999999999999999999999999999994
Q ss_pred CCccEEEEcCCCC---CCCCCCccchhhhcC
Q psy6439 87 QPIPAVLEIPSKD---HPYDASKDSILRRAK 114 (114)
Q Consensus 87 ~~~P~Iv~IP~~~---g~~~~~~d~i~~~~~ 114 (114)
+..|+|++|||++ |++ .++++|.+|++
T Consensus 71 ~~~P~Il~IPs~~~~~g~~-~~~~~i~~~V~ 100 (109)
T 2d00_A 71 RDLPVLLPIAGLKEAFQGH-DVEGYMRELVR 100 (109)
T ss_dssp CCCCEEEEESCGGGGGSSS-CHHHHHHHHHH
T ss_pred CCCeEEEEECCCcccCCCc-chHHHHHHHHH
Confidence 8899999999999 999 99999999874
No 4
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=99.93 E-value=9.4e-27 Score=159.78 Aligned_cols=97 Identities=27% Similarity=0.467 Sum_probs=70.6
Q ss_pred CcccccCCcEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHH
Q psy6439 2 ALHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHC 81 (114)
Q Consensus 2 ~~~~~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~ 81 (114)
.-|.-..++-+|||||+||++||||+|+++++. + ++++|++++|+++++++|||||+|||++++.+++.
T Consensus 2 ~~~~~~~~~~~aVIGD~Dtv~GFrLaGi~~~~~-------~----~~~ee~~~~~~~l~~~~digIIlIte~ia~~i~~~ 70 (102)
T 2i4r_A 2 GHHHHHHSHMLAVVGDPDFTIGFMLAGISDIYE-------V----TSDEEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPV 70 (102)
T ss_dssp -------CCEEEEEECHHHHHHHHHTTCCCEEE-------C----CSHHHHHHHHHHHHHCSSEEEEEEEGGGSTTSCHH
T ss_pred CccccccceeEEEEcCHHHHHHHHHcCCCcccC-------C----CCHHHHHHHHHHHhhCCCeEEEEEeHHHHHHHHHH
Confidence 334444578999999999999999999999531 1 34599999999999999999999999999999999
Q ss_pred HhhcCC--CccEEEEcCCCCCCCCCCccchh
Q psy6439 82 IDDHTQ--PIPAVLEIPSKDHPYDASKDSIL 110 (114)
Q Consensus 82 i~~~~~--~~P~Iv~IP~~~g~~~~~~d~i~ 110 (114)
|++|+. ..|+|++|||++|+. .-+++|-
T Consensus 71 i~~~~~~~~~P~IieIPs~~g~~-~i~~~V~ 100 (102)
T 2i4r_A 71 LRREIDEKVEPTFVSVGGTGGVE-EIREKIR 100 (102)
T ss_dssp HHTTTTTCCSSEEEEEC--------------
T ss_pred HHHHHhCCCccEEEEECCCCCCc-cHHhHhh
Confidence 999963 899999999999984 4455543
No 5
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=99.93 E-value=4.1e-27 Score=160.80 Aligned_cols=90 Identities=22% Similarity=0.390 Sum_probs=78.6
Q ss_pred cEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHH-hhcC-C
Q psy6439 10 KLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCI-DDHT-Q 87 (114)
Q Consensus 10 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i-~~~~-~ 87 (114)
+|||||||+||++||||+|+++++ ++.+ ++|++++|++++++++||||++||++++.+++.+ +.+. +
T Consensus 1 MkiaVIGD~dtv~GFrLaGi~~v~-------~v~~----~ee~~~~~~~l~~~~digIIlite~~a~~i~~~i~~~~~~~ 69 (101)
T 2ov6_A 1 MELAVIGKSEFVTGFRLAGISKVY-------ETPD----IPATESAVRSVLEDKSVGILVMHNDDIGNLPEVLRKNLNES 69 (101)
T ss_dssp CCEEEEECHHHHHHHHHHTCCEEE-------ECCS----TTTHHHHHHHHHHHTSSSEEEEEHHHHTTCTTTTHHHHHHH
T ss_pred CEEEEEECHHHHHHHHHcCCCceE-------ecCC----HHHHHHHHHHHhhCCCeEEEEEcHHHHHHhHHHHHHHHhCC
Confidence 489999999999999999999863 3323 3899999999999999999999999999999999 5554 7
Q ss_pred CccEEEEcCCCCCCCCCCccchhhhcC
Q psy6439 88 PIPAVLEIPSKDHPYDASKDSILRRAK 114 (114)
Q Consensus 88 ~~P~Iv~IP~~~g~~~~~~d~i~~~~~ 114 (114)
..|+|++|||++ +++++|.+|++
T Consensus 70 ~~P~Iv~IP~~~----~~~~~i~~~v~ 92 (101)
T 2ov6_A 70 VQPTVVALGGSG----SGSTSLREKIK 92 (101)
T ss_dssp CCSCEEEECTTS----SCCCCCCCCCS
T ss_pred CCcEEEEECCCC----CChhHHHHHHH
Confidence 899999999998 44489999875
No 6
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=79.57 E-value=6.3 Score=31.39 Aligned_cols=83 Identities=22% Similarity=0.304 Sum_probs=58.8
Q ss_pred cEEEEEcchh-----HHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEe--------hHHHH
Q psy6439 10 KLLAVIGDED-----TCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILIN--------QNVAE 76 (114)
Q Consensus 10 ~kIaVIGD~d-----tv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~it--------e~~~~ 76 (114)
-+|+++++-- |.=-..+.|.+. .||.-+....+.+.+.++|+-+++++++-.|+++ +.+++
T Consensus 257 G~Ig~~~nGaGl~m~t~D~i~~~Gg~~------aNflD~gG~a~~~~~~~~~~~il~d~~v~~ilvni~ggi~~~~~vA~ 330 (388)
T 2nu8_B 257 GNIGCMVNGAGLAMGTMDIVKLHGGEP------ANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIAD 330 (388)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHTTCCB------CEEEECCSCCCHHHHHHHHHHHHTSTTCCEEEEEEESCSSCHHHHHH
T ss_pred CEEEEEeCCCchhhhhhHHHHHcCCCc------CceeEecCCCCHHHHHHHHHHHhcCCCCCEEEEEecCCcCCchHHHH
Confidence 3688887732 111234445332 3688887777889999999999999999888873 46777
Q ss_pred HHHHHHhhcCCCccEEEEcCCC
Q psy6439 77 LIRHCIDDHTQPIPAVLEIPSK 98 (114)
Q Consensus 77 ~i~d~i~~~~~~~P~Iv~IP~~ 98 (114)
.+-+.+.++....|+||-+.+.
T Consensus 331 gii~a~~~~~~~~pivvrl~G~ 352 (388)
T 2nu8_B 331 GIIGAVAEVGVNVPVVVRLEGN 352 (388)
T ss_dssp HHHHHHHHHTCCSCEEEEEEST
T ss_pred HHHHHHHhcCCCCeEEEEeCCC
Confidence 7777777765668999977554
No 7
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=76.46 E-value=8.7 Score=30.72 Aligned_cols=83 Identities=18% Similarity=0.247 Sum_probs=57.9
Q ss_pred cEEEEEcchhHH-----HHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEE------e--hHHHH
Q psy6439 10 KLLAVIGDEDTC-----VGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILI------N--QNVAE 76 (114)
Q Consensus 10 ~kIaVIGD~dtv-----~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~i------t--e~~~~ 76 (114)
-+|++|++-.-. =-....|.+. .||+-+-...+.+.+.++|+.+++++++-.|++ + +.+++
T Consensus 248 g~I~ii~Ng~Gl~~~t~D~i~~~G~~~------aN~lD~gG~a~~e~~~~al~~~l~d~~v~~ilv~i~ggi~~~~~vA~ 321 (397)
T 3ufx_B 248 GNIGIIGNGAGLVMYTLDLVNRVGGKP------ANFLDIGGGAKADVVYNALKVVLKDPDVKGVFINIFGGITRADEVAK 321 (397)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHTTCCB------SEEEECCSCCCHHHHHHHHHHHHTCTTCCEEEEEEEEEEEESHHHHH
T ss_pred CcEEEEecCccHHHHHHHHHHHcCCCc------CCcEecCCCCCHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHH
Confidence 589999985211 1223345442 368888777788999999999999998866665 1 56777
Q ss_pred HHHHHHhhcCCCccEEEEcCCC
Q psy6439 77 LIRHCIDDHTQPIPAVLEIPSK 98 (114)
Q Consensus 77 ~i~d~i~~~~~~~P~Iv~IP~~ 98 (114)
.+-+...+++...|+|+-..+.
T Consensus 322 ~i~~a~~~~~~~kPvvv~~~G~ 343 (397)
T 3ufx_B 322 GVIRALEEGLLTKPVVMRVAGT 343 (397)
T ss_dssp HHHHHHTTTCCCSCEEEEEEEE
T ss_pred HHHHHHHhhCCCCcEEEEccCC
Confidence 7777666654468988877653
No 8
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=75.64 E-value=15 Score=27.26 Aligned_cols=82 Identities=10% Similarity=0.113 Sum_probs=53.6
Q ss_pred CCcEEEEEcc----------hhHHHHHhhc------cccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEE-
Q psy6439 8 KGKLLAVIGD----------EDTCVGFLLG------GIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILI- 70 (114)
Q Consensus 8 ~~~kIaVIGD----------~dtv~GFrLa------Gi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~i- 70 (114)
..-||+++.. .+...|++++ |+.+.. -.+++.|...+++...+..++++.++++-.|+-
T Consensus 3 ~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~~ggi~G~~----i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 78 (375)
T 3i09_A 3 DSVKIGFITDMSGLYADIDGQGGLEAIKMAVADFGGKVNGKP----IEVVYADHQNKADIAASKAREWMDRGGLDLLVGG 78 (375)
T ss_dssp SSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHHTSEETTEE----EEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCeEEEEEeCCCcccccccCHHHHHHHHHHHHHhCCCCCCeE----EEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECC
Confidence 3568888864 3466778776 333311 115555766778899999999997677766663
Q ss_pred -ehHHHHHHHHHHhhcCCCccEEEEc
Q psy6439 71 -NQNVAELIRHCIDDHTQPIPAVLEI 95 (114)
Q Consensus 71 -te~~~~~i~d~i~~~~~~~P~Iv~I 95 (114)
+......+.+.+++ ...|+|.+-
T Consensus 79 ~~s~~~~a~~~~~~~--~~ip~i~~~ 102 (375)
T 3i09_A 79 TNSATALSMNQVAAE--KKKVYINIG 102 (375)
T ss_dssp SCHHHHHHHHHHHHH--HTCEEEECS
T ss_pred CCcHHHHHHHHHHHH--cCceEEEeC
Confidence 45556666666666 458888763
No 9
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=74.50 E-value=16 Score=27.29 Aligned_cols=83 Identities=19% Similarity=0.224 Sum_probs=54.3
Q ss_pred CCcEEEEEcc----------hhHHHHHhhc------cccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEE--
Q psy6439 8 KGKLLAVIGD----------EDTCVGFLLG------GIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIIL-- 69 (114)
Q Consensus 8 ~~~kIaVIGD----------~dtv~GFrLa------Gi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~-- 69 (114)
..-||+++.. .+...|++|+ |+.+. .-.+++.|...+++...+..++++.++++..|+
T Consensus 5 ~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i~ggi~G~----~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 80 (379)
T 3n0w_A 5 GQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDVGGKALGQ----PVKLVSADYQMKTDVALSIAREWFDRDGVDAIFDV 80 (379)
T ss_dssp -CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHTTTEETTE----ECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CcEEEEEEeCCccccccccCHHHHHHHHHHHHHhcCCCCCe----EEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 4578998864 3456788776 33321 112556677778889999999999756666555
Q ss_pred EehHHHHHHHHHHhhcCCCccEEEEcC
Q psy6439 70 INQNVAELIRHCIDDHTQPIPAVLEIP 96 (114)
Q Consensus 70 ite~~~~~i~d~i~~~~~~~P~Iv~IP 96 (114)
.+......+.+.+++ ...|.|.+-.
T Consensus 81 ~~s~~~~a~~~~~~~--~~ip~i~~~~ 105 (379)
T 3n0w_A 81 VNSGTALAINNLVKD--KKKLAFITAA 105 (379)
T ss_dssp CCHHHHHHHHHHHHH--HTCEEEECSC
T ss_pred CCcHHHHHHHHHHHH--cCceEEEcCC
Confidence 455666666676776 4588887643
No 10
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=73.87 E-value=15 Score=27.62 Aligned_cols=83 Identities=13% Similarity=0.180 Sum_probs=55.0
Q ss_pred cEEEEEcc---------hhHHHHHhhc------cccceeccCCCceeeecCC-CCHHHHHHHHHHhhcCCCeEEEE--Ee
Q psy6439 10 KLLAVIGD---------EDTCVGFLLG------GIGEINKHRQPNFLVVDKN-TSVSDIEEAFRKFIKRDDVDIIL--IN 71 (114)
Q Consensus 10 ~kIaVIGD---------~dtv~GFrLa------Gi~~~~~~~~~nf~vv~~~-~~~ee~~~~l~~l~~~~digII~--it 71 (114)
-||+++.+ .....|++|+ |+.+.-. .+++.|.. .+++...+..++|+.++++-.|+ .+
T Consensus 6 IkIG~~~plSG~~a~~G~~~~~g~~la~~~~nggi~G~~i----elv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG~~~ 81 (371)
T 4f06_A 6 IKVGVIGTMSGPYALFGKNYKMGIDAWVAEHGNKVAGHTV----EFVYRDEVSPNPAQSKALAQELIVKEKVQYLAGLYF 81 (371)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHHHHHHHHHCSEETTEEE----EEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEECCS
T ss_pred EEEEEEeCCcCchHHhHHHHHHHHHHHHHHhCCCCCCEEE----EEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 57888765 4566788875 3433211 14454543 36788889999999888887777 55
Q ss_pred hHHHHHHHHHHhhcCCCccEEEEcCCC
Q psy6439 72 QNVAELIRHCIDDHTQPIPAVLEIPSK 98 (114)
Q Consensus 72 e~~~~~i~d~i~~~~~~~P~Iv~IP~~ 98 (114)
......+.+..++ ...|.|.+-.+.
T Consensus 82 S~~~~a~~~~~~~--~~vp~i~~~a~~ 106 (371)
T 4f06_A 82 TPNAMAVAPLLQE--AKVPMVVMNAAT 106 (371)
T ss_dssp HHHHHHHGGGHHH--HTCCEEESSCCC
T ss_pred ccchHHHHHHHHh--hcCCcccccccc
Confidence 6666677777777 458888764443
No 11
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=73.86 E-value=24 Score=25.91 Aligned_cols=87 Identities=11% Similarity=0.138 Sum_probs=54.6
Q ss_pred ccCCcEEEEEcch---------hHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEE--ehHH
Q psy6439 6 AVKGKLLAVIGDE---------DTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILI--NQNV 74 (114)
Q Consensus 6 ~~~~~kIaVIGD~---------dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~i--te~~ 74 (114)
+...-+|+++... +...|++++ ++.+. ...=.+++.|...+++...+.+++++.++++..|+. +...
T Consensus 24 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a-~~~i~-G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~ 101 (386)
T 3sg0_A 24 AQAEIKIGITMSASGPGAALGQPQSKTVAAL-PKEIG-GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSSLTPV 101 (386)
T ss_dssp -CCCEEEEEEECCSSTTHHHHHHHHHHGGGS-CSEET-TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCSSHHH
T ss_pred CCCceEEEEEeccCCchhhhcHHHHHHHHHH-HHHcC-CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEECCCCchh
Confidence 4567899999762 566777765 33320 000114445666677888889999998766666553 4555
Q ss_pred HHHHHHHHhhcCCCccEEEEcC
Q psy6439 75 AELIRHCIDDHTQPIPAVLEIP 96 (114)
Q Consensus 75 ~~~i~d~i~~~~~~~P~Iv~IP 96 (114)
...+.+.+.+ ...|+|.+-.
T Consensus 102 ~~~~~~~~~~--~~ip~v~~~~ 121 (386)
T 3sg0_A 102 SLPLIDIAAE--AKTPLMTMAA 121 (386)
T ss_dssp HHHHHHHHHH--TTCCEEECCC
T ss_pred HHHHHHHHHh--cCCeEEEecC
Confidence 5556666666 5689887643
No 12
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=72.70 E-value=9.7 Score=30.46 Aligned_cols=83 Identities=20% Similarity=0.294 Sum_probs=57.7
Q ss_pred cEEEEEcchh--HHHH---HhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEe--------hHHHH
Q psy6439 10 KLLAVIGDED--TCVG---FLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILIN--------QNVAE 76 (114)
Q Consensus 10 ~kIaVIGD~d--tv~G---FrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~it--------e~~~~ 76 (114)
-+|+++++-- .+.- ..+.|.+. .||.-+-...+.+.+.++|+-+++++++-.|+++ +.+++
T Consensus 264 G~Ig~~~nGaGlam~t~D~i~~~Gg~p------aNflDvgG~a~~e~~~~al~~il~d~~v~~ilvni~ggi~~~d~vA~ 337 (395)
T 2fp4_B 264 GNIACFVNGAGLAMATCDIIFLNGGKP------ANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIAN 337 (395)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHTTCCB------CEEEECCSSCCHHHHHHHHHHHHHCTTCCEEEEEEEESSSCHHHHHH
T ss_pred CeEEEEecCchHHHHHHHHHHHcCCCc------CCcEEECCCCCHHHHHHHHHHHhCCCCCCEEEEEecCCccCcHHHHH
Confidence 3688887731 1111 23344332 3688887777889999999999999999888863 45777
Q ss_pred HHHHHHhhcCCCccEEEEcCCC
Q psy6439 77 LIRHCIDDHTQPIPAVLEIPSK 98 (114)
Q Consensus 77 ~i~d~i~~~~~~~P~Iv~IP~~ 98 (114)
.+-+.+.++....|+||-+-+.
T Consensus 338 gii~a~~~~~~~~Pivvrl~G~ 359 (395)
T 2fp4_B 338 GITKACRELELKVPLVVRLEGT 359 (395)
T ss_dssp HHHHHHHHHTCCSCEEEEEEET
T ss_pred HHHHHHHhcCCCCeEEEEcCCC
Confidence 7777777766668999876443
No 13
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=72.34 E-value=24 Score=26.32 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=53.7
Q ss_pred ccCCcEEEEEcc---------hhHHHHHhhc--------cccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCe-EE
Q psy6439 6 AVKGKLLAVIGD---------EDTCVGFLLG--------GIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDV-DI 67 (114)
Q Consensus 6 ~~~~~kIaVIGD---------~dtv~GFrLa--------Gi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~di-gI 67 (114)
+...-||+++.. .+...|++++ |+.+... .+++.|...+++...+.+++++.++++ +|
T Consensus 4 a~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~i----~l~~~D~~~~~~~~~~~~~~li~~~~V~~i 79 (392)
T 3lkb_A 4 GQQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGVVF----NCVVRDDQYNNANTQRFFEEAVDRFKIPVF 79 (392)
T ss_dssp CCEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSSTTEEE----EEEEEECTTCHHHHHHHHHHHHHTTCCSCE
T ss_pred cCCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcCCeEe----EEEEecCCCCHHHHHHHHHHHHhhcCcEEE
Confidence 345678999986 2567788775 3333111 145556666788888999999987454 66
Q ss_pred EEEehHHHHHHHHHHhhcCCCccEEEE
Q psy6439 68 ILINQNVAELIRHCIDDHTQPIPAVLE 94 (114)
Q Consensus 68 I~ite~~~~~i~d~i~~~~~~~P~Iv~ 94 (114)
|..+......+.+.+.+ ...|+|.+
T Consensus 80 ig~~s~~~~~~~~~~~~--~~iP~i~~ 104 (392)
T 3lkb_A 80 LSYATGANLQLKPLIQE--LRIPTIPA 104 (392)
T ss_dssp EECCHHHHHHHHHHHHH--HTCCEEES
T ss_pred EeCCcHHHHHHHHHHHh--CCceEEec
Confidence 65555555556666666 45888763
No 14
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=71.14 E-value=28 Score=25.56 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=52.3
Q ss_pred cCCcEEEEEcc---------hhHHHHHhhcccccee-ccC-CCceeeecCCCCHHHHHHHHHHhhcCCCeEEEE--EehH
Q psy6439 7 VKGKLLAVIGD---------EDTCVGFLLGGIGEIN-KHR-QPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIIL--INQN 73 (114)
Q Consensus 7 ~~~~kIaVIGD---------~dtv~GFrLaGi~~~~-~~~-~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~--ite~ 73 (114)
++-.||+++.. .+...|++++= +.+. ... .-.+++.|...+++...+.+++++.++++..|+ .+..
T Consensus 14 ~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~-~~in~i~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG~~~s~ 92 (366)
T 3td9_A 14 RKVVKIAVILPMTGGISAFGRMVWEGIQIAH-EEKPTVLGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEVASA 92 (366)
T ss_dssp --CEEEEEEECCSSTTHHHHHHHHHHHHHHH-HHCCEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHH
T ss_pred cceEEEEEEECCcCcchhcCHHHHHHHHHHH-HHhhhcCCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEccCCch
Confidence 44578999876 34556666641 1110 000 001445566667788889999999876565555 4455
Q ss_pred HHHHHHHHHhhcCCCccEEEEcC
Q psy6439 74 VAELIRHCIDDHTQPIPAVLEIP 96 (114)
Q Consensus 74 ~~~~i~d~i~~~~~~~P~Iv~IP 96 (114)
....+.+.+++ ...|+|.+-.
T Consensus 93 ~~~~~~~~~~~--~~iP~i~~~~ 113 (366)
T 3td9_A 93 HSLAIAPIAEE--NKVPMVTPAS 113 (366)
T ss_dssp HHHHHHHHHHH--TTCCEEESSC
T ss_pred hHHHHHHHHHh--CCCeEEecCC
Confidence 66666666766 5589887654
No 15
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=68.98 E-value=33 Score=25.65 Aligned_cols=81 Identities=20% Similarity=0.209 Sum_probs=51.1
Q ss_pred CcEEEEEcc---------hhHHHHHhhc--------cc--cceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCe-EEE
Q psy6439 9 GKLLAVIGD---------EDTCVGFLLG--------GI--GEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDV-DII 68 (114)
Q Consensus 9 ~~kIaVIGD---------~dtv~GFrLa--------Gi--~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~di-gII 68 (114)
.-+|+++.. .+...|++++ |+ .+... .=.+++.|...+++...+.+++++.++++ +||
T Consensus 4 ~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~--~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~ii 81 (391)
T 3eaf_A 4 TINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRV--NINYIKRDYAYNPTTAEEYYREFRDRYGVIAII 81 (391)
T ss_dssp EEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEE--EEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred cEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEE--EEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEE
Confidence 468898875 3567788876 33 22100 00255567777788888999999955554 555
Q ss_pred EEehHHHHHHHHHHhhcCCCccEEE
Q psy6439 69 LINQNVAELIRHCIDDHTQPIPAVL 93 (114)
Q Consensus 69 ~ite~~~~~i~d~i~~~~~~~P~Iv 93 (114)
-.+......+.+.+++ ...|+|.
T Consensus 82 G~~s~~~~a~~~~~~~--~~iP~i~ 104 (391)
T 3eaf_A 82 GWGTADTEKLSDQVDT--DKITYIS 104 (391)
T ss_dssp ECCHHHHHHHHHHHHH--HTCEEEE
T ss_pred EcCcHHHHHHHHHHhh--cCCeEEe
Confidence 5555555566666666 4588876
No 16
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=68.64 E-value=24 Score=24.92 Aligned_cols=86 Identities=24% Similarity=0.198 Sum_probs=45.6
Q ss_pred ccCCcEEEEEcc--hhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHh
Q psy6439 6 AVKGKLLAVIGD--EDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCID 83 (114)
Q Consensus 6 ~~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~ 83 (114)
.++...||++-. .+....-.+.|++......+-++.+.+...+.+.-.+.++.+..+.==|||+..... ...-+.+.
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~l~ 82 (276)
T 3jy6_A 4 TQSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN-PQTVQEIL 82 (276)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC-HHHHHHHH
T ss_pred CCCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc-HHHHHHHH
Confidence 456788998864 222333334555542222222233444444555556778877765555777776555 32222233
Q ss_pred hcCCCccEEEE
Q psy6439 84 DHTQPIPAVLE 94 (114)
Q Consensus 84 ~~~~~~P~Iv~ 94 (114)
+ ...|+|+.
T Consensus 83 ~--~~iPvV~i 91 (276)
T 3jy6_A 83 H--QQMPVVSV 91 (276)
T ss_dssp T--TSSCEEEE
T ss_pred H--CCCCEEEE
Confidence 3 67897765
No 17
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=68.38 E-value=31 Score=25.34 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=51.6
Q ss_pred CCcEEEEEcch---------hHHHHHhhc--------cccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEE
Q psy6439 8 KGKLLAVIGDE---------DTCVGFLLG--------GIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILI 70 (114)
Q Consensus 8 ~~~kIaVIGD~---------dtv~GFrLa--------Gi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~i 70 (114)
..-+|+++... +...|++++ |+.+. .-.+++.|...+++...+.+++++.++++..|+.
T Consensus 4 ~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G~----~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig 79 (364)
T 3lop_A 4 ADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGE----TIRLVARDDEQKIEQTVRNVRDMARVDNPVALLT 79 (364)
T ss_dssp -CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTB----CEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEC
T ss_pred CeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCCe----EEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEe
Confidence 35689988873 456677765 22221 1114555666677888889999998767766663
Q ss_pred --ehHHHHHHHH--HHhhcCCCccEEEEc
Q psy6439 71 --NQNVAELIRH--CIDDHTQPIPAVLEI 95 (114)
Q Consensus 71 --te~~~~~i~d--~i~~~~~~~P~Iv~I 95 (114)
+......+.+ .+.+ ...|+|.+-
T Consensus 80 ~~~s~~~~~~~~~~~~~~--~~iP~v~~~ 106 (364)
T 3lop_A 80 VVGTANVEALMREGVLAE--ARLPLVGPA 106 (364)
T ss_dssp CCCHHHHHHHHHTTHHHH--HTCCEESCS
T ss_pred cCCCHHHHhhCchhhHHh--cCCcEEEcc
Confidence 4555666666 6666 447877543
No 18
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=67.05 E-value=34 Score=24.99 Aligned_cols=85 Identities=9% Similarity=0.115 Sum_probs=57.9
Q ss_pred CCcEEEEEcc---------hhHHHHHhhc--------cccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEE
Q psy6439 8 KGKLLAVIGD---------EDTCVGFLLG--------GIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILI 70 (114)
Q Consensus 8 ~~~kIaVIGD---------~dtv~GFrLa--------Gi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~i 70 (114)
+.-||+++.+ .+...|++|| |+.+... .+++.|...+++...+..++|+.++.+-+|+-
T Consensus 6 ~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr~i----elv~~D~~~~p~~a~~~a~~li~~~~v~~i~g 81 (353)
T 4gnr_A 6 KTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQI----EVVDKDNKSETAEAASVTTNLVTQSKVSAVVG 81 (353)
T ss_dssp CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBEE----EEEEEECTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred CeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCCCeEE----EEEEecCCCCHHHHHHHHHHHHhhCCceEEec
Confidence 3467888865 3567788876 5554211 15566777788999999999998887666654
Q ss_pred --ehHHHHHHHHHHhhcCCCccEEEEcCCC
Q psy6439 71 --NQNVAELIRHCIDDHTQPIPAVLEIPSK 98 (114)
Q Consensus 71 --te~~~~~i~d~i~~~~~~~P~Iv~IP~~ 98 (114)
+......+.+..++ ...|.|.+-.+.
T Consensus 82 ~~~s~~~~a~~~~~~~--~~vp~i~~~~~~ 109 (353)
T 4gnr_A 82 PATSGATAAAVANATK--AGVPLISPSATQ 109 (353)
T ss_dssp CCSHHHHHHHHHHHHH--TTCCEEESSCCC
T ss_pred cccCcccceehhhhhc--cCcceEeecccc
Confidence 45566666666777 557888765444
No 19
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=66.48 E-value=24 Score=25.95 Aligned_cols=82 Identities=20% Similarity=0.303 Sum_probs=51.5
Q ss_pred CCcEEEEEcc---------hhHHHHHhhc----c--ccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEE--
Q psy6439 8 KGKLLAVIGD---------EDTCVGFLLG----G--IGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILI-- 70 (114)
Q Consensus 8 ~~~kIaVIGD---------~dtv~GFrLa----G--i~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~i-- 70 (114)
+..+|+++.. .+...|++++ | +.+.. -.+++.|...+++...+.+++++.++++..|+.
T Consensus 15 ~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~~~g~~----~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 90 (375)
T 4evq_A 15 GALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGGRS----ISFVKVDDESAPPKATELTTKLIQSEKADVLIGTV 90 (375)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTEETTEE----EEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEECS
T ss_pred CCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCCcCCEE----EEEEEecCCCCHHHHHHHHHHHHhcCCceEEEcCC
Confidence 4678999965 3566777775 1 21110 114455666677888889999997666655553
Q ss_pred ehHHHHHHHHHHhhcCCCccEEEEc
Q psy6439 71 NQNVAELIRHCIDDHTQPIPAVLEI 95 (114)
Q Consensus 71 te~~~~~i~d~i~~~~~~~P~Iv~I 95 (114)
+......+.+.+.+ ...|+|.+-
T Consensus 91 ~s~~~~~~~~~~~~--~~iP~v~~~ 113 (375)
T 4evq_A 91 HSGVAMAMVKIARE--DGIPTIVPN 113 (375)
T ss_dssp SHHHHHHHHHHHHH--HCCCEEESS
T ss_pred ccHHHHHHHHHHHH--cCceEEecC
Confidence 34455556666666 458888654
No 20
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=66.29 E-value=26 Score=24.20 Aligned_cols=42 Identities=24% Similarity=0.372 Sum_probs=29.6
Q ss_pred HhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehH
Q psy6439 24 FLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQN 73 (114)
Q Consensus 24 FrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~ 73 (114)
++-.|++... +.++.+ +.+++.+++.++....++-+|+.|-.
T Consensus 49 L~~~G~~v~~------~~iV~D--d~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 49 LIENGHKIIG------YSLVPD--DKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp HHHTTCEEEE------EEEECS--CHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred HHHCCCEEEE------EEEeCC--CHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 4456776542 345544 45889999998887888999998854
No 21
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=61.97 E-value=45 Score=24.76 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=53.6
Q ss_pred CcEEEEEcc---------hhHHHHHhhc------c---ccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEE
Q psy6439 9 GKLLAVIGD---------EDTCVGFLLG------G---IGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILI 70 (114)
Q Consensus 9 ~~kIaVIGD---------~dtv~GFrLa------G---i~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~i 70 (114)
.-||+++.. .+...|++|| | +.+.. =.+++.|...+++...+..++|+.++++-.|+=
T Consensus 4 ~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi~G~~----i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG 79 (374)
T 3n0x_A 4 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRK----IVVITKDDQSKPDLSKAALAEAYQDDGADIAIG 79 (374)
T ss_dssp CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEETTEE----EEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCcCCEE----EEEEEecCCCCHHHHHHHHHHHHHhCCceEEEc
Confidence 468888864 4667788875 2 32211 125666777788999999999998777776664
Q ss_pred --ehHHHHHHHHHHhhcCCCccEEEE
Q psy6439 71 --NQNVAELIRHCIDDHTQPIPAVLE 94 (114)
Q Consensus 71 --te~~~~~i~d~i~~~~~~~P~Iv~ 94 (114)
+......+.+..++. ..|.|..
T Consensus 80 ~~~s~~~~a~~~~~~~~--~ip~i~~ 103 (374)
T 3n0x_A 80 TSSSAAALADLPVAEEN--KKILIVE 103 (374)
T ss_dssp CSSHHHHHHHHHHHHHH--TCCEEEC
T ss_pred CCCcHHHHHHHHHHHHc--CccEEEc
Confidence 344566666666663 4787764
No 22
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=61.27 E-value=33 Score=24.66 Aligned_cols=59 Identities=8% Similarity=-0.016 Sum_probs=42.8
Q ss_pred ccCCcEEEEEcch-hHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHH
Q psy6439 6 AVKGKLLAVIGDE-DTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHC 81 (114)
Q Consensus 6 ~~~~~kIaVIGD~-dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~ 81 (114)
.+...||+|+++. +-..--+-+|++.+ ..+|+.+.++. ...++-+++-|.++...+...
T Consensus 29 ~k~~~~V~Vfa~~~~~~~~Ak~aGad~v---------------g~~dLi~ki~~--~~~~fD~~iAtp~~m~~l~~l 88 (189)
T 2ftc_A 29 ASEINKVAVFTENASEVKIAEENGAAFA---------------GGTSLIQKIWD--DEIVADFYVAVPEIMPELNRL 88 (189)
T ss_pred CCCCCEEEEEeCChhHHHHHHHcCCCCc---------------CHHHHHHHHHc--CCccCCEEEECHHHHHHHHHh
Confidence 3344599999997 56677788999753 23787666654 335788999999998888664
No 23
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=60.76 E-value=17 Score=26.76 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=48.4
Q ss_pred ccccCCcEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHh--hc--CCCeEEEEEehHHHHHHH
Q psy6439 4 HSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKF--IK--RDDVDIILINQNVAELIR 79 (114)
Q Consensus 4 ~~~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l--~~--~~digII~ite~~~~~i~ 79 (114)
|.-.+..||+|+++.+...--+-+|++.+ . .+++++..+.. .+ ..++-+++.+.++...+.
T Consensus 54 h~~~k~~kV~Vf~~~~~~~~Ak~aGad~v-----------g----~e~L~k~~k~~k~~kkl~~~fD~~lA~~~im~~l~ 118 (216)
T 3j21_A 54 HGRGKDVKIAVIADGAVAEAARKLGLDVI-----------S----SAELEEIASSPRQARKLAKKYDFFIAEAPLMPKIG 118 (216)
T ss_dssp SCCSSCCCEEECCCSHHHHHHHHHTCCCC-----------C----TTHHHHHHHCCCSSSCCSSSCSEEEBCGGGHHHHH
T ss_pred CCCCCCcEEEEECCHHHHHHHHhcCCCcc-----------C----HHHHHHHhcCHHHHhhhhhhCCEEEeCHHHHHHHH
Confidence 55556789999999998888899999842 1 26775543321 00 257999999999998888
Q ss_pred HHHhhc
Q psy6439 80 HCIDDH 85 (114)
Q Consensus 80 d~i~~~ 85 (114)
..+-+.
T Consensus 119 k~LGk~ 124 (216)
T 3j21_A 119 RYLGRY 124 (216)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766664
No 24
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=60.60 E-value=19 Score=27.13 Aligned_cols=63 Identities=10% Similarity=0.144 Sum_probs=47.5
Q ss_pred ccccCCcEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHH-HHhhcCCCeEEEEEehHHHHHHHHHH
Q psy6439 4 HSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAF-RKFIKRDDVDIILINQNVAELIRHCI 82 (114)
Q Consensus 4 ~~~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l-~~l~~~~digII~ite~~~~~i~d~i 82 (114)
|.-.+..||+|+++.+...-=+-+|++.+- . +|+.+.+ +.- ..++-.++-|.++...+.. |
T Consensus 70 h~~gk~~kV~Vfa~~~~~~eAk~aGad~vg-----------~----~dLi~ki~k~g--~~~fD~~iAtpd~m~~l~~-L 131 (242)
T 3qoy_A 70 HGLGKPIKVVVFAEGEYAKKAEEAGADYVG-----------G----DELINKILKEE--WTDFDVAIATPEMMPKVAK-L 131 (242)
T ss_dssp CCCSSCCCEEEECCHHHHHHHHHTTCSEEE-----------S----HHHHHHHHHHT--CCCCSEEEECTTTHHHHGG-G
T ss_pred CCCCCCcEEEEEcCHHHHHHHHHcCCCEEC-----------c----HHHHHHHHhCC--CccCCEEEECHHHHHHHHH-H
Confidence 555567899999999988888999999532 1 6666666 554 3579999999998888765 4
Q ss_pred hh
Q psy6439 83 DD 84 (114)
Q Consensus 83 ~~ 84 (114)
-+
T Consensus 132 Gr 133 (242)
T 3qoy_A 132 GR 133 (242)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 25
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=57.78 E-value=52 Score=23.93 Aligned_cols=82 Identities=16% Similarity=0.113 Sum_probs=50.0
Q ss_pred CCcEEEEEcc---------hhHHHHHhhc--------cccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEE
Q psy6439 8 KGKLLAVIGD---------EDTCVGFLLG--------GIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILI 70 (114)
Q Consensus 8 ~~~kIaVIGD---------~dtv~GFrLa--------Gi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~i 70 (114)
...+|+++.. .+...|++++ |+.+. .-.+++.|...+++...+.+++++.++++..|+.
T Consensus 3 ~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~----~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 78 (358)
T 3hut_A 3 LALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGR----PVDILYADSRDDADQARTIARAFVDDPRVVGVLG 78 (358)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTB----CEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEE
T ss_pred ccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCe----EEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEc
Confidence 4578888875 2456666654 11110 0114455666677888889999996667666654
Q ss_pred --ehHHHHHHHHHHhhcCCCccEEEEc
Q psy6439 71 --NQNVAELIRHCIDDHTQPIPAVLEI 95 (114)
Q Consensus 71 --te~~~~~i~d~i~~~~~~~P~Iv~I 95 (114)
+......+.+.+.+ ...|+|.+-
T Consensus 79 ~~~s~~~~~~~~~~~~--~~iP~v~~~ 103 (358)
T 3hut_A 79 DFSSTVSMAAGSIYGK--EGMPQLSPT 103 (358)
T ss_dssp CSSHHHHHHHHHHHHH--HTCCEEESS
T ss_pred CCCcHHHHHHHHHHHH--CCCcEEecC
Confidence 34445555566666 458888753
No 26
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=56.40 E-value=36 Score=25.38 Aligned_cols=65 Identities=12% Similarity=0.069 Sum_probs=48.2
Q ss_pred ccccCCcEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHh
Q psy6439 4 HSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCID 83 (114)
Q Consensus 4 ~~~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~ 83 (114)
|.-.+..||+|+++.|.+.==+-+|++.+- . +|+.+.++.- .-++-.++-|.++...+...+-
T Consensus 67 ~g~gk~~kV~Vfa~~~~~~eAk~aGAd~vG-----------~----~dLi~kIk~g--~~~fD~~iAtpd~m~~vg~~LG 129 (229)
T 3u42_A 67 HGLGKQVRVLAIAKGEKIKEAEEAGADYVG-----------G----EEIIQKILDG--WMDFDAVVATPDVMGAVGSKLG 129 (229)
T ss_dssp SSCSTTSCEEEECCTHHHHHHHHTTCSEEE-----------C----THHHHHHHTT--CCCCSEEEECGGGHHHHHHHHH
T ss_pred CCCCCceEEEEecChHhHHHHHhcCCceeC-----------c----HHHHHHHhcC--CccccEEEEchHHHHHHHHhhc
Confidence 555667899999999999989999999632 1 5565666653 3478889999998887754455
Q ss_pred hc
Q psy6439 84 DH 85 (114)
Q Consensus 84 ~~ 85 (114)
++
T Consensus 130 ~i 131 (229)
T 3u42_A 130 RI 131 (229)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 27
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=55.21 E-value=51 Score=24.44 Aligned_cols=83 Identities=12% Similarity=0.111 Sum_probs=52.2
Q ss_pred CCcEEEEEcch--------hHHHHHhhc--------cccc-eeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEE
Q psy6439 8 KGKLLAVIGDE--------DTCVGFLLG--------GIGE-INKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILI 70 (114)
Q Consensus 8 ~~~kIaVIGD~--------dtv~GFrLa--------Gi~~-~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~i 70 (114)
..-+|+++... +...|++++ |+.+ . .=.+++.|...+++...+.+++++.++++..|+-
T Consensus 4 ~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~----~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG 79 (387)
T 3i45_A 4 EAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGR----PLEVISRDDGGDPGKAVTAAQELLTRHGVHALAG 79 (387)
T ss_dssp CCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTB----CEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred CCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCc----ceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEEC
Confidence 45789998552 356677775 2222 1 0114555666778888899999997656655553
Q ss_pred --ehHHHHHHHHHHhhcCCCccEEEEcC
Q psy6439 71 --NQNVAELIRHCIDDHTQPIPAVLEIP 96 (114)
Q Consensus 71 --te~~~~~i~d~i~~~~~~~P~Iv~IP 96 (114)
+......+.+..++ ...|.|.+-+
T Consensus 80 ~~~s~~~~a~~~~~~~--~~ip~i~~~~ 105 (387)
T 3i45_A 80 TFLSHVGLAVSDFARQ--RKVLFMASEP 105 (387)
T ss_dssp CCSHHHHHHHHHHHHH--HTCCEEECSC
T ss_pred CcchHHHHHHHHHHHH--cCceEEecCC
Confidence 34555566666666 4588887544
No 28
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=51.56 E-value=26 Score=26.18 Aligned_cols=63 Identities=11% Similarity=0.222 Sum_probs=46.3
Q ss_pred ccccCCcEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHh
Q psy6439 4 HSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCID 83 (114)
Q Consensus 4 ~~~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~ 83 (114)
|.-.+..||+|+++.+..--=+-+|++.+ .. +++.+.++.-. .++-+++-|.++...+.. |-
T Consensus 67 h~~~k~~rV~Vfa~~~~~~~Ak~aGad~v-----------g~----edLi~kik~~~--~~fD~~iAtp~~m~~l~~-LG 128 (234)
T 2wwq_5 67 HGTGRSVRVAVFTQGANAEAAKAAGAELV-----------GM----EDLADQIKKGE--MNFDVVIASPDAMRVVGQ-LG 128 (234)
T ss_dssp SCCSSCCCEEEECSSSCHHHHHHHTCSEE-----------CS----HHHHHHHHHTC--CCSSEEEECHHHHHHTTS-SC
T ss_pred CCCCCCcEEEEEcCchhHHHHHHcCCCEE-----------cH----HHHHHHHHcCc--ccCCEEEECHHHHHHHHH-Hh
Confidence 44456789999999766666677898642 22 88876777654 679999999999888865 55
Q ss_pred h
Q psy6439 84 D 84 (114)
Q Consensus 84 ~ 84 (114)
+
T Consensus 129 k 129 (234)
T 2wwq_5 129 Q 129 (234)
T ss_dssp S
T ss_pred h
Confidence 5
No 29
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=50.92 E-value=36 Score=24.99 Aligned_cols=71 Identities=23% Similarity=0.255 Sum_probs=49.6
Q ss_pred ccccCCcEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHH-------hhcCCCeEEEEEehHHHH
Q psy6439 4 HSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRK-------FIKRDDVDIILINQNVAE 76 (114)
Q Consensus 4 ~~~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~-------l~~~~digII~ite~~~~ 76 (114)
|.-.+..+|+|+++.+-.---+-+|++.+ ..+++ +.+++ +. .++-+++.|.++..
T Consensus 52 h~~~k~~~V~Vf~~~~~~~~A~~aGa~~v---------------g~~~L-~ki~~~kk~~r~l~--~~fD~~lA~~~~m~ 113 (219)
T 1i2a_A 52 HGRGKEAKIAVIGTGDLAKQAEELGLTVI---------------RKEEI-EELGKNKRKLRKIA--KAHDFFIAQADLMP 113 (219)
T ss_dssp TCCSSCCCEEEECCHHHHHHHHHTTCEEE---------------CHHHH-HHHHHCHHHHHHHH--HHCSEEEEEGGGHH
T ss_pred CCCCCCcEEEEEcCchhHHHHHHCCCCEE---------------cHHHH-HHHHhhhhhhhhch--hhCCEEEECHHHHH
Confidence 44456799999999877777778898642 22777 55542 32 46889999999988
Q ss_pred HHHHHHhhc---CCCccEE
Q psy6439 77 LIRHCIDDH---TQPIPAV 92 (114)
Q Consensus 77 ~i~d~i~~~---~~~~P~I 92 (114)
.+...+-+. +...|.-
T Consensus 114 ~l~k~LGk~LgprgkmP~p 132 (219)
T 1i2a_A 114 LIGRYMGVILGPRGKMPKP 132 (219)
T ss_dssp HHHHHTHHHHGGGTCCCEE
T ss_pred HHHHHHhhhhcccCCCCcc
Confidence 887755554 3556643
No 30
>3uf6_A LMO1369 protein; structural genomics, the center for structural genomics of I diseases, csgid, unknown function, transferase; HET: COD; 1.80A {Listeria monocytogenes} PDB: 3tng_A* 3u9e_A*
Probab=50.86 E-value=54 Score=25.05 Aligned_cols=81 Identities=17% Similarity=0.289 Sum_probs=47.5
Q ss_pred CcEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEeh-HHHHHHHHHHhhcCC
Q psy6439 9 GKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQ-NVAELIRHCIDDHTQ 87 (114)
Q Consensus 9 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite-~~~~~i~d~i~~~~~ 87 (114)
..++..+||++.+ +++-.+ +|.++++.++++.++.... ++++.+...++=-- ...+.++..+.+...
T Consensus 43 ~~~~ILvG~~~~I---~~~~~~--------~~eIid~~~~~~aar~a~~-mV~~G~ADa~vsG~~~t~~~lr~~l~~~~G 110 (291)
T 3uf6_A 43 LGKFLLFGKKEDK---TLTANE--------SVTWIQTDTAEAAAQGAIL-AVKNKEADILVKGFIPTATLMHHVLKKENG 110 (291)
T ss_dssp CCEEEEEESSCCH---HHHTST--------TEEEEECCSHHHHHHHHHH-HHHTTSCSEEEECSSCHHHHHHHHTCGGGS
T ss_pred CceEEEEcCHHHH---hhhccC--------CCEEECCCChHHHHHHHHH-HHHCCCCCEEEECCCChHHHHHHHhccccC
Confidence 4567788988877 332222 2667787666666665554 66666655444332 346677776655433
Q ss_pred Ccc-------EEEEcCCCCCC
Q psy6439 88 PIP-------AVLEIPSKDHP 101 (114)
Q Consensus 88 ~~P-------~Iv~IP~~~g~ 101 (114)
..| .++.+|+.++.
T Consensus 111 ~r~~~~vs~~~~~~~p~~~~~ 131 (291)
T 3uf6_A 111 LRTDQLLSQIAIFDIPTYHKP 131 (291)
T ss_dssp CCCSSCCEEEEEEECTTSSSC
T ss_pred CCCCceeeEEEEEEEcCCCCc
Confidence 333 46788976543
No 31
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=48.62 E-value=13 Score=27.48 Aligned_cols=52 Identities=6% Similarity=0.002 Sum_probs=37.0
Q ss_pred CcEEEEEcchhHHHHHh----hccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEe
Q psy6439 9 GKLLAVIGDEDTCVGFL----LGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILIN 71 (114)
Q Consensus 9 ~~kIaVIGD~dtv~GFr----LaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~it 71 (114)
..|||++|-+..+.|++ +.|++-.. |.. . +++|+++.++++. ++++.+|+=.
T Consensus 106 ~~kIavVg~~~~~~~~~~i~~ll~~~i~~------~~~-~---~~ee~~~~i~~l~-~~G~~vVVG~ 161 (225)
T 2pju_A 106 TSSIGVVTYQETIPALVAFQKTFNLRLDQ------RSY-I---TEEDARGQINELK-ANGTEAVVGA 161 (225)
T ss_dssp TSCEEEEEESSCCHHHHHHHHHHTCCEEE------EEE-S---SHHHHHHHHHHHH-HTTCCEEEES
T ss_pred CCcEEEEeCchhhhHHHHHHHHhCCceEE------EEe-C---CHHHHHHHHHHHH-HCCCCEEECC
Confidence 47899999999988865 55665421 223 2 3599999999887 5677776543
No 32
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=46.79 E-value=58 Score=26.16 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=40.4
Q ss_pred ceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEe-----------hHHHHHHHHHHhhcCCCccEEE-EcCC
Q psy6439 39 NFLVVDKNTSVSDIEEAFRKFIKRDDVDIILIN-----------QNVAELIRHCIDDHTQPIPAVL-EIPS 97 (114)
Q Consensus 39 nf~vv~~~~~~ee~~~~l~~l~~~~digII~it-----------e~~~~~i~d~i~~~~~~~P~Iv-~IP~ 97 (114)
|++=+-.+.+++...++|+.+++++++..|++. ...++.+-+.+.+.....|+++ .+.+
T Consensus 343 NPlDl~g~a~~~~~~~al~~~l~dp~vd~vlv~~~~~~~Gg~~~~~~a~~i~~al~~~~~~kPvvv~~~~g 413 (457)
T 2csu_A 343 NPVDMIASARGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAG 413 (457)
T ss_dssp SEEECCTTCCHHHHHHHHHHHHHSTTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECT
T ss_pred CCeeCCCCCCHHHHHHHHHHHhcCCCCCEEEEEccccccccCCchhHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 566555556789999999999999998777762 2445555555555444578777 4443
No 33
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=45.23 E-value=32 Score=24.31 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=40.0
Q ss_pred cCCcEEEEEcch-------hHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHH
Q psy6439 7 VKGKLLAVIGDE-------DTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIR 79 (114)
Q Consensus 7 ~~~~kIaVIGD~-------dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~ 79 (114)
++..+||++-.. +....-.+.|++......+-++.+.+.+.+.+...+.++.+..+.==|||++.....+..-
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~ 85 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSRENDRII 85 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTCHHH
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHH
Confidence 456789998654 1122222334443221111123333333333444556666665544567766544322222
Q ss_pred HHHhhcCCCccEEEE
Q psy6439 80 HCIDDHTQPIPAVLE 94 (114)
Q Consensus 80 d~i~~~~~~~P~Iv~ 94 (114)
+.+.+ ...|+|+.
T Consensus 86 ~~l~~--~~iPvV~~ 98 (292)
T 3k4h_A 86 QYLHE--QNFPFVLI 98 (292)
T ss_dssp HHHHH--TTCCEEEE
T ss_pred HHHHH--CCCCEEEE
Confidence 23333 66897764
No 34
>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A
Probab=44.77 E-value=31 Score=23.10 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=20.1
Q ss_pred cEEEEEcchh-H-HHHHhhccccceec
Q psy6439 10 KLLAVIGDED-T-CVGFLLGGIGEINK 34 (114)
Q Consensus 10 ~kIaVIGD~d-t-v~GFrLaGi~~~~~ 34 (114)
..+.++||.. . +.+++.+|+..+..
T Consensus 173 ~~~~~vGD~~~~Di~~a~~aG~~~~~v 199 (234)
T 3u26_A 173 EEAVYVGDNPVKDCGGSKNLGMTSILL 199 (234)
T ss_dssp GGEEEEESCTTTTHHHHHTTTCEEEEE
T ss_pred hhEEEEcCCcHHHHHHHHHcCCEEEEE
Confidence 5689999974 5 99999999876543
No 35
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=43.06 E-value=31 Score=25.28 Aligned_cols=69 Identities=12% Similarity=0.205 Sum_probs=48.8
Q ss_pred ccccCCcEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHH-------HhhcCCCeEEEEEehHHHH
Q psy6439 4 HSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFR-------KFIKRDDVDIILINQNVAE 76 (114)
Q Consensus 4 ~~~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~-------~l~~~~digII~ite~~~~ 76 (114)
|.-.+..+|+|+++.+..---+-+|++.+ ..+++ +.++ .+. .+|-+++.|.++..
T Consensus 52 h~~~k~~~V~Vf~~~~~~~~A~~aGa~~v---------------g~~~L-~ki~~~kk~~k~~~--~~fD~~lA~~~~m~ 113 (212)
T 2zkr_5 52 AGTGQETTIVVFAEGETALRAEEVADDVL---------------DEDEL-EELGGDDDAAKDLA--DDTDFFIAEKGLMQ 113 (212)
T ss_dssp SCCSSCCCEEEECCHHHHHHHHHHTSCCC---------------CHHHH-HHHTTCHHHHHHHH--HHCSEEEECTTTHH
T ss_pred CCCCCCcEEEEEcCchhHHHHHhcCCCEe---------------CHHHH-HHHHhhHHhhhccc--ccCCEEEECHHHHH
Confidence 44456889999999887777788899642 23777 5554 332 36889999999988
Q ss_pred HHHHHHhhc---CCCcc
Q psy6439 77 LIRHCIDDH---TQPIP 90 (114)
Q Consensus 77 ~i~d~i~~~---~~~~P 90 (114)
.+...+-+. +...|
T Consensus 114 ~l~~~LGk~LgprgkmP 130 (212)
T 2zkr_5 114 DIGRYLGTVLGPRGKMP 130 (212)
T ss_dssp HHHHHTHHHHHHHTCCE
T ss_pred HHHHHHhhhccccCCcC
Confidence 887756553 24555
No 36
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}
Probab=41.61 E-value=40 Score=22.74 Aligned_cols=25 Identities=20% Similarity=0.016 Sum_probs=19.7
Q ss_pred cEEEEEcc-hhHHHHHhhccccceec
Q psy6439 10 KLLAVIGD-EDTCVGFLLGGIGEINK 34 (114)
Q Consensus 10 ~kIaVIGD-~dtv~GFrLaGi~~~~~ 34 (114)
..+.++|| ..-+.+.+.+|+..+..
T Consensus 183 ~~~i~vGD~~~Di~~a~~aG~~~i~v 208 (247)
T 3dv9_A 183 NEALVIENAPLGVQAGVAAGIFTIAV 208 (247)
T ss_dssp GGEEEEECSHHHHHHHHHTTSEEEEE
T ss_pred hheEEEeCCHHHHHHHHHCCCeEEEE
Confidence 45789999 55688999999987543
No 37
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=41.00 E-value=53 Score=23.94 Aligned_cols=83 Identities=11% Similarity=0.048 Sum_probs=52.7
Q ss_pred cCCcEEEEEcch---------hHHHHHhhcc------ccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEE--
Q psy6439 7 VKGKLLAVIGDE---------DTCVGFLLGG------IGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIIL-- 69 (114)
Q Consensus 7 ~~~~kIaVIGD~---------dtv~GFrLaG------i~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~-- 69 (114)
...-+|+++... +...|++++= +.+.. -.+++.|...+++...+.+++++.++++..|+
T Consensus 4 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~~i~G~~----i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~ 79 (368)
T 4eyg_A 4 EDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGDTVAGKK----IEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGF 79 (368)
T ss_dssp CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCSEETTEE----EEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCCCCCCeE----EEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 345789998763 4556776641 22110 02555576677888889999999766766555
Q ss_pred EehHHHHHHHHHHhhcCCCccEEEEc
Q psy6439 70 INQNVAELIRHCIDDHTQPIPAVLEI 95 (114)
Q Consensus 70 ite~~~~~i~d~i~~~~~~~P~Iv~I 95 (114)
.+......+.+.+.+ ...|.|.+-
T Consensus 80 ~~s~~~~~~~~~~~~--~~ip~i~~~ 103 (368)
T 4eyg_A 80 GITPAALAAAPLATQ--AKVPEIVMA 103 (368)
T ss_dssp SSHHHHHHHHHHHHH--HTCCEEESS
T ss_pred CccHHHHHHHHHHHh--CCceEEecc
Confidence 455566666666666 458888654
No 38
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=40.49 E-value=92 Score=21.77 Aligned_cols=87 Identities=10% Similarity=0.037 Sum_probs=41.3
Q ss_pred cCCcEEEEEcch--hHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhh
Q psy6439 7 VKGKLLAVIGDE--DTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDD 84 (114)
Q Consensus 7 ~~~~kIaVIGD~--dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~ 84 (114)
++.++|+++-.. +....=-+.|++......+-++.+.+...+.+.-.+.++.++.+.==|||+...+ .....+.++.
T Consensus 3 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~-~~~~~~~~~~ 81 (291)
T 3l49_A 3 LEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGN-LDVLNPWLQK 81 (291)
T ss_dssp CTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSC-HHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-hhhhHHHHHH
Confidence 456789988551 1111112334443211111123333444455666677888876544466666432 1112222333
Q ss_pred cC-CCccEEEE
Q psy6439 85 HT-QPIPAVLE 94 (114)
Q Consensus 85 ~~-~~~P~Iv~ 94 (114)
+. ...|+|..
T Consensus 82 ~~~~~iPvV~~ 92 (291)
T 3l49_A 82 INDAGIPLFTV 92 (291)
T ss_dssp HHHTTCCEEEE
T ss_pred HHHCCCcEEEe
Confidence 32 66886654
No 39
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=40.48 E-value=15 Score=26.18 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=39.4
Q ss_pred CcEEEEEcchhHHHHHh----hccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHH
Q psy6439 9 GKLLAVIGDEDTCVGFL----LGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAE 76 (114)
Q Consensus 9 ~~kIaVIGD~dtv~GFr----LaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~ 76 (114)
..|||++|-+..+.|++ +.|++-.. |... +++|+++.++++. ++++.+|+=..-..+
T Consensus 94 ~~kIavvg~~~~~~~~~~~~~ll~~~i~~------~~~~----~~~e~~~~i~~l~-~~G~~vvVG~~~~~~ 154 (196)
T 2q5c_A 94 GNELALIAYKHSIVDKHEIEAMLGVKIKE------FLFS----SEDEITTLISKVK-TENIKIVVSGKTVTD 154 (196)
T ss_dssp CSEEEEEEESSCSSCHHHHHHHHTCEEEE------EEEC----SGGGHHHHHHHHH-HTTCCEEEECHHHHH
T ss_pred CCcEEEEeCcchhhHHHHHHHHhCCceEE------EEeC----CHHHHHHHHHHHH-HCCCeEEECCHHHHH
Confidence 46999999999888876 35655321 3332 3489999999887 578888765544433
No 40
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=39.86 E-value=47 Score=24.33 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=45.9
Q ss_pred ccccCCcEEEEEcchhHHHHHhhcccc-ceeccCCCceeeecCCCCHHHHHHHHH-------HhhcCCCeEEEEEehHHH
Q psy6439 4 HSAVKGKLLAVIGDEDTCVGFLLGGIG-EINKHRQPNFLVVDKNTSVSDIEEAFR-------KFIKRDDVDIILINQNVA 75 (114)
Q Consensus 4 ~~~~~~~kIaVIGD~dtv~GFrLaGi~-~~~~~~~~nf~vv~~~~~~ee~~~~l~-------~l~~~~digII~ite~~~ 75 (114)
|.-.+..+|+|+++.+-.--=+-+|++ .+ ..+++ +.++ .+. .+|-+++.|.++.
T Consensus 56 h~~~k~~~V~Vf~~~~~~~~A~~aGad~~v---------------g~~~L-~ki~~~kk~~k~~~--~~fD~~lA~~~~m 117 (217)
T 1mzp_A 56 KQPSKAKRVLVVPSSEQLEYAKKASPKVVI---------------TREEL-QKLQGQKRPVKKLA--RQNEWFLINQESM 117 (217)
T ss_dssp SCCSSCCCEEEECCHHHHHHHHHTCCSEEC---------------CHHHH-HHHTTCHHHHHHHH--HSCSEEEECGGGH
T ss_pred CCCCCCcEEEEEcCchhHHHHHhcCCCeee---------------CHHHH-HHHHhhHHhhhhch--hhCCEEEECHHHH
Confidence 444578899999998766666788987 32 22777 5553 232 3689999999998
Q ss_pred HHHHHHHhhc
Q psy6439 76 ELIRHCIDDH 85 (114)
Q Consensus 76 ~~i~d~i~~~ 85 (114)
..+...+-+.
T Consensus 118 ~~l~~~LG~~ 127 (217)
T 1mzp_A 118 ALAGRILGPA 127 (217)
T ss_dssp HHHHHHTHHH
T ss_pred HHHHHHHhhh
Confidence 8887766554
No 41
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=39.46 E-value=1e+02 Score=22.09 Aligned_cols=83 Identities=19% Similarity=0.145 Sum_probs=41.2
Q ss_pred CCcEEEEEcc-hhHHHHHhhccccceeccCCC----c--eeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHH
Q psy6439 8 KGKLLAVIGD-EDTCVGFLLGGIGEINKHRQP----N--FLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRH 80 (114)
Q Consensus 8 ~~~kIaVIGD-~dtv~GFrLaGi~~~~~~~~~----n--f~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d 80 (114)
+.+.|+|+-+ ......=-+.|++.......- + +...+.+.+.+...+.++.+.++.==|||++.......+..
T Consensus 7 ~t~~IGvi~~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~~ 86 (302)
T 2qh8_A 7 KTAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATPTAQALVS 86 (302)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESHHHHHHHHH
T ss_pred CCcEEEEEEeccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECChHHHHHHHh
Confidence 5688999954 111112233444432211110 1 22234445566677778888754323666665443333322
Q ss_pred HHhhcCCCccEEEE
Q psy6439 81 CIDDHTQPIPAVLE 94 (114)
Q Consensus 81 ~i~~~~~~~P~Iv~ 94 (114)
.....|+|..
T Consensus 87 ----~~~~iPvV~~ 96 (302)
T 2qh8_A 87 ----ATKTIPIVFT 96 (302)
T ss_dssp ----HCSSSCEEEE
T ss_pred ----cCCCcCEEEE
Confidence 2467897654
No 42
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=39.45 E-value=96 Score=21.68 Aligned_cols=82 Identities=9% Similarity=0.056 Sum_probs=41.8
Q ss_pred CcEEEEEcchh--HHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcC--CCe-EEEEEehHHHHHHHHHHh
Q psy6439 9 GKLLAVIGDED--TCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKR--DDV-DIILINQNVAELIRHCID 83 (114)
Q Consensus 9 ~~kIaVIGD~d--tv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~--~di-gII~ite~~~~~i~d~i~ 83 (114)
..+|++++... ...--|+.|+........-.+.+...+.+.++..+.+++++++ +++ ||+..++.++-.+-..+.
T Consensus 118 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~ 197 (277)
T 3cs3_A 118 SKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYEIIQGDFTEPSGYAAAKKILSQPQTEPVDVFAFNDEMAIGVYKYVA 197 (277)
T ss_dssp CSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEEEEECCSSHHHHHHHHHHHTTSCCCSSEEEEESSHHHHHHHHHHHT
T ss_pred CceEEEEeCCccCccHHHHHHHHHHHHHHcCCCeeEEeCCCChhHHHHHHHHHHhcCCCCCcEEEEcChHHHHHHHHHHH
Confidence 46899997642 2222334443321111110111222333557777888888865 455 555555666666666666
Q ss_pred hcCCCcc
Q psy6439 84 DHTQPIP 90 (114)
Q Consensus 84 ~~~~~~P 90 (114)
+.....|
T Consensus 198 ~~g~~vP 204 (277)
T 3cs3_A 198 ETNYQMG 204 (277)
T ss_dssp TSSCCBT
T ss_pred HcCCCCC
Confidence 6543344
No 43
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=39.38 E-value=45 Score=23.23 Aligned_cols=45 Identities=11% Similarity=0.284 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhhcCCCccEEEE
Q psy6439 48 SVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDDHTQPIPAVLE 94 (114)
Q Consensus 48 ~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~~~~~~P~Iv~ 94 (114)
+.+...+.++.+..+.==|||+......+..-+.+.+ ...|+|+.
T Consensus 44 ~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~--~~iPvV~~ 88 (275)
T 3d8u_A 44 SIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEA--SNTPVLEI 88 (275)
T ss_dssp CHHHHHHHHHHHHTSCCCCEEEESSCCCHHHHHHHHH--HTCCEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHh--CCCCEEEE
Confidence 4455566788777654457777654332222222333 45787664
No 44
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=38.78 E-value=56 Score=22.90 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=22.9
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCCeEEEEEehH
Q psy6439 41 LVVDKNTSVSDIEEAFRKFIKRDDVDIILINQN 73 (114)
Q Consensus 41 ~vv~~~~~~ee~~~~l~~l~~~~digII~ite~ 73 (114)
.++.+ +.++++++|++++++.++-+|++|-.
T Consensus 60 ~iv~D--d~~~I~~al~~a~~~~~~DlVittGG 90 (178)
T 2pjk_A 60 SLVPD--DKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp EEECS--CHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred EEeCC--CHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 34443 46899999999986656888988843
No 45
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=38.22 E-value=1.2e+02 Score=22.24 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=48.9
Q ss_pred CCcEEEEEcchh--HHHHHhhccccceeccCCCceeeec-CCCCHHHHHHHHHHhhcCCC-eEEEEEehHHHHHHHHHHh
Q psy6439 8 KGKLLAVIGDED--TCVGFLLGGIGEINKHRQPNFLVVD-KNTSVSDIEEAFRKFIKRDD-VDIILINQNVAELIRHCID 83 (114)
Q Consensus 8 ~~~kIaVIGD~d--tv~GFrLaGi~~~~~~~~~nf~vv~-~~~~~ee~~~~l~~l~~~~d-igII~ite~~~~~i~d~i~ 83 (114)
...+|++++.+. ...--|+.|+.......... .+.. .+.+.++..+.+++++++.. -||+..++.++-.+-..+.
T Consensus 173 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~nd~~A~g~~~al~ 251 (333)
T 3jvd_A 173 SGMNIAALVGEESLSTTQERMRGISHAASIYGAE-VTFHFGHYSVESGEEMAQVVFNNGLPDALIVASPRLMAGVMRAFT 251 (333)
T ss_dssp SSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE-EEEEECCSSHHHHHHHHHHHHHTCCCSEEEECCHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCCC-EEEecCCCCHHHHHHHHHHHhcCCCCcEEEECCHHHHHHHHHHHH
Confidence 457899998642 22333455544322111111 2223 34466888888999987654 4666666666766666677
Q ss_pred hcCCCcc---EEEEc
Q psy6439 84 DHTQPIP---AVLEI 95 (114)
Q Consensus 84 ~~~~~~P---~Iv~I 95 (114)
+.....| .|+-.
T Consensus 252 ~~G~~vP~disvig~ 266 (333)
T 3jvd_A 252 RLNVRVPHDVVIGGY 266 (333)
T ss_dssp HTTCCTTTTCEEEEE
T ss_pred HcCCCCCCceEEEEE
Confidence 7654334 45544
No 46
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=37.97 E-value=81 Score=22.10 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=41.5
Q ss_pred cCCcEEEEEcc--hhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhh
Q psy6439 7 VKGKLLAVIGD--EDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDD 84 (114)
Q Consensus 7 ~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~ 84 (114)
++..+|+++-. .+....=.+.|++......+-++.+.+.+.+.+...+.++.++.+.==|||+...... .+.+.+..
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~~~ 84 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDV-YIGSAIEE 84 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTT-TTHHHHHH
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChH-HHHHHHHH
Confidence 45678988754 1222222234444321111112334444445566677888888665557777654321 11222333
Q ss_pred cC-CCccEEEE
Q psy6439 85 HT-QPIPAVLE 94 (114)
Q Consensus 85 ~~-~~~P~Iv~ 94 (114)
+. ...|+|+.
T Consensus 85 ~~~~~iPvV~~ 95 (293)
T 3l6u_A 85 AKKAGIPVFAI 95 (293)
T ss_dssp HHHTTCCEEEE
T ss_pred HHHcCCCEEEe
Confidence 31 56897765
No 47
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=36.52 E-value=52 Score=22.08 Aligned_cols=25 Identities=20% Similarity=0.106 Sum_probs=20.1
Q ss_pred EEEEEcc-hhHHHHHhhccccceecc
Q psy6439 11 LLAVIGD-EDTCVGFLLGGIGEINKH 35 (114)
Q Consensus 11 kIaVIGD-~dtv~GFrLaGi~~~~~~ 35 (114)
.+.+||| ..-+.+++.+|+..+...
T Consensus 179 ~~v~vGD~~~Di~~a~~aG~~~v~~~ 204 (231)
T 3kzx_A 179 EVFFIGDSISDIQSAIEAGCLPIKYG 204 (231)
T ss_dssp TEEEEESSHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEcCCHHHHHHHHHCCCeEEEEC
Confidence 6889999 666889999999876553
No 48
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=36.50 E-value=21 Score=28.62 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=47.2
Q ss_pred ccccCCcEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHh
Q psy6439 4 HSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCID 83 (114)
Q Consensus 4 ~~~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~ 83 (114)
|.-.+..||+|+++.+-.---+-+|++.+ .. +++.+.+++.. .++-+++-|.++...+.. |-
T Consensus 181 hgtgk~~kVcVfa~ge~~eeAk~AGAdvV-----------G~----edLikkIKkg~--~dFD~fIAtpdmM~~lgr-LG 242 (352)
T 3bbo_D 181 KGTGKTVKIAVLAQGDKIDEAKAAGADIV-----------GG----EELIEQIKGGF--MDFDKLIATSDMMAKVAS-LG 242 (352)
T ss_dssp TTSSSSSCEEEECCTTTTHHHHTTTCSEE-----------EC----TTTHHHHTTTC--CCCSEEEECSSSHHHHGG-GG
T ss_pred CCCCCccEEEEEeCchhHHHHHHcCCCcc-----------CH----HHHHHHHHhch--hhcCEEEECHHHHHHHHh-hc
Confidence 44457889999999766666677888632 22 67777788775 578899999999888765 65
Q ss_pred hc
Q psy6439 84 DH 85 (114)
Q Consensus 84 ~~ 85 (114)
+.
T Consensus 243 ki 244 (352)
T 3bbo_D 243 RI 244 (352)
T ss_dssp GT
T ss_pred cc
Confidence 53
No 49
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=36.22 E-value=71 Score=22.97 Aligned_cols=86 Identities=14% Similarity=0.203 Sum_probs=52.3
Q ss_pred ccCCcEEEEEcch---------hHHHHHhhccccceeccCCCc--eeeecCCCCHHHHHHHHHHhhcCCCeEEEEE--eh
Q psy6439 6 AVKGKLLAVIGDE---------DTCVGFLLGGIGEINKHRQPN--FLVVDKNTSVSDIEEAFRKFIKRDDVDIILI--NQ 72 (114)
Q Consensus 6 ~~~~~kIaVIGD~---------dtv~GFrLaGi~~~~~~~~~n--f~vv~~~~~~ee~~~~l~~l~~~~digII~i--te 72 (114)
+...-+|+++... +...|++++ ++.+ +..+ +++.|...+++...+.+++++.++++..|+. +.
T Consensus 4 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a-~~~i---~g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s 79 (362)
T 3snr_A 4 ETNEITVGISVTTTGPAAALGIPERNALEFV-VKEI---SGHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGSSVT 79 (362)
T ss_dssp CCCCEEEEEEECCSSTTHHHHHHHHHGGGGS-CSEE---TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSH
T ss_pred CCCCeEEEEEecccCchhhcCHHHHHHHHHH-HHHh---CCeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcCCCc
Confidence 3456789999762 345566653 3322 1111 4444666677888889999998766655553 44
Q ss_pred HHHHHHHHHHhhcCCCccEEEEcCC
Q psy6439 73 NVAELIRHCIDDHTQPIPAVLEIPS 97 (114)
Q Consensus 73 ~~~~~i~d~i~~~~~~~P~Iv~IP~ 97 (114)
.....+.+.+.+ ...|+|..-.+
T Consensus 80 ~~~~~~~~~~~~--~~ip~v~~~~~ 102 (362)
T 3snr_A 80 PPSVAISNVANE--AQIPHIALAPL 102 (362)
T ss_dssp HHHHHHHHHHHH--HTCCEEESSCC
T ss_pred HHHHHHHHHHHH--cCccEEEecCC
Confidence 455556666666 45888875533
No 50
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}
Probab=35.98 E-value=27 Score=23.24 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=26.5
Q ss_pred cEEEEEcc-hhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhc
Q psy6439 10 KLLAVIGD-EDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIK 61 (114)
Q Consensus 10 ~kIaVIGD-~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~ 61 (114)
..+.+||| ..-+.+.+.+|+..+... .. +++++.|+.+++
T Consensus 168 ~~~~~igD~~~Di~~a~~aG~~~~~~~--------~~----~~~~~~l~~~l~ 208 (211)
T 2i6x_A 168 EETLFIDDGPANVATAERLGFHTYCPD--------NG----ENWIPAITRLLR 208 (211)
T ss_dssp GGEEEECSCHHHHHHHHHTTCEEECCC--------TT----CCCHHHHHHHHT
T ss_pred HHeEEeCCCHHHHHHHHHcCCEEEEEC--------CH----HHHHHHHHHHHh
Confidence 46788999 445889999999874331 11 455566666653
No 51
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=35.61 E-value=1.2e+02 Score=22.71 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=52.2
Q ss_pred cCCcEEEEEcc---------hhHHHHHhhc--------cccceeccCCCceeeecCC-CCHHHHHHHHHHhhcCCCeEEE
Q psy6439 7 VKGKLLAVIGD---------EDTCVGFLLG--------GIGEINKHRQPNFLVVDKN-TSVSDIEEAFRKFIKRDDVDII 68 (114)
Q Consensus 7 ~~~~kIaVIGD---------~dtv~GFrLa--------Gi~~~~~~~~~nf~vv~~~-~~~ee~~~~l~~l~~~~digII 68 (114)
...-||+++.. .....|++|| |+.+. .-.+++.|.+ .+++...+..++++.++++-.|
T Consensus 12 ~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~G~----~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~ai 87 (419)
T 3h5l_A 12 SDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGILGR----PIELVFADTQSKGVDVVIQSAQRLIDRDNASAL 87 (419)
T ss_dssp -CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBTTB----CEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEE
T ss_pred CCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcCce----EEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEE
Confidence 44678999975 4667788887 33221 1125565654 4788899999999987888777
Q ss_pred EE--ehHHHHHHHHHHhhcCCCccEEEE
Q psy6439 69 LI--NQNVAELIRHCIDDHTQPIPAVLE 94 (114)
Q Consensus 69 ~i--te~~~~~i~d~i~~~~~~~P~Iv~ 94 (114)
+= +......+.+..++ ...|+|-+
T Consensus 88 iG~~~s~~~~a~~~~~~~--~~ip~i~~ 113 (419)
T 3h5l_A 88 IAGYNLENGTALHDVAAD--AGVIAMHA 113 (419)
T ss_dssp ECSCCSSCSCHHHHHHHH--HTCEEEEC
T ss_pred EccccchhHHHhHHHHHH--cCCeEEEc
Confidence 73 33334444555666 34777763
No 52
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=35.46 E-value=59 Score=23.19 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=41.5
Q ss_pred ccCCcEEEEEcc----hhHHHHH---hhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHH
Q psy6439 6 AVKGKLLAVIGD----EDTCVGF---LLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELI 78 (114)
Q Consensus 6 ~~~~~kIaVIGD----~dtv~GF---rLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i 78 (114)
.++...||++-. ++.-.+| .+.|++......+-++.+.+.+.+.+.-.+.++.+..+.==|||+......+..
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~ 83 (295)
T 3hcw_A 4 TNQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKENDPI 83 (295)
T ss_dssp CCCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTTCHH
T ss_pred CCCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccChHH
Confidence 356788999962 2222222 345555432222212223233223344445666666554447777654332222
Q ss_pred HHHHhhcCCCccEEEE
Q psy6439 79 RHCIDDHTQPIPAVLE 94 (114)
Q Consensus 79 ~d~i~~~~~~~P~Iv~ 94 (114)
-+.+.+ ...|+|+.
T Consensus 84 ~~~l~~--~~iPvV~i 97 (295)
T 3hcw_A 84 KQMLID--ESMPFIVI 97 (295)
T ss_dssp HHHHHH--TTCCEEEE
T ss_pred HHHHHh--CCCCEEEE
Confidence 223333 56897764
No 53
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=34.83 E-value=64 Score=22.18 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=22.9
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCCeEEEEEehH
Q psy6439 41 LVVDKNTSVSDIEEAFRKFIKRDDVDIILINQN 73 (114)
Q Consensus 41 ~vv~~~~~~ee~~~~l~~l~~~~digII~ite~ 73 (114)
.++.+ +.++++++|++++++.++.+|++|-.
T Consensus 51 ~iv~D--d~~~i~~~l~~~~~~~~~DlVittGG 81 (169)
T 1y5e_A 51 EIVKD--DKESIQQAVLAGYHKEDVDVVLTNGG 81 (169)
T ss_dssp EEECS--SHHHHHHHHHHHHTCTTCSEEEEECC
T ss_pred EEeCC--CHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 34443 46899999999986557889988843
No 54
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=34.74 E-value=98 Score=22.77 Aligned_cols=86 Identities=10% Similarity=0.118 Sum_probs=42.2
Q ss_pred cCCcEEEEEcc--hhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhh
Q psy6439 7 VKGKLLAVIGD--EDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDD 84 (114)
Q Consensus 7 ~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~ 84 (114)
++...|+++-. .+....-.+.|++......+-++.+.+.+.+.+.-.+.++.++.+.==|||+......+..-+.+.+
T Consensus 68 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~ 147 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHTEQTIRLLQR 147 (355)
T ss_dssp ---CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCCHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHh
Confidence 34567888743 1122222344555422211111233333334566667788787665568888764433322233333
Q ss_pred cCCCccEEEE
Q psy6439 85 HTQPIPAVLE 94 (114)
Q Consensus 85 ~~~~~P~Iv~ 94 (114)
...|+|+.
T Consensus 148 --~~iPvV~i 155 (355)
T 3e3m_A 148 --ASIPIVEI 155 (355)
T ss_dssp --CCSCEEEE
T ss_pred --CCCCEEEE
Confidence 66898765
No 55
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=34.71 E-value=1.2e+02 Score=22.15 Aligned_cols=86 Identities=19% Similarity=0.189 Sum_probs=43.4
Q ss_pred cCCcEEEEEcc--hhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhh
Q psy6439 7 VKGKLLAVIGD--EDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDD 84 (114)
Q Consensus 7 ~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~ 84 (114)
++...|+++-. .+....-.+.|++......+-++.+.+.+.+.+.-.+.++.++.+.==|||+......+..-+.+.+
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~ 145 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSEAARAMLDA 145 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHh
Confidence 34578988843 1112222344555422211111233333345566667788887655558888754433323233444
Q ss_pred cCCCccEEEE
Q psy6439 85 HTQPIPAVLE 94 (114)
Q Consensus 85 ~~~~~P~Iv~ 94 (114)
...|+|+.
T Consensus 146 --~~iPvV~i 153 (344)
T 3kjx_A 146 --AGIPVVEI 153 (344)
T ss_dssp --CSSCEEEE
T ss_pred --CCCCEEEE
Confidence 66897765
No 56
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=34.33 E-value=65 Score=24.82 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=36.5
Q ss_pred EEEEcc-hhHH-------HHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEe
Q psy6439 12 LAVIGD-EDTC-------VGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILIN 71 (114)
Q Consensus 12 IaVIGD-~dtv-------~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~it 71 (114)
+..+|| +++. --+.-.|++.. ++..+.+++++|+.+.++++=+++++-=|++.
T Consensus 39 vilvg~dpaS~~Yv~~k~k~~~~~Gi~~~-------~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvq 99 (285)
T 3l07_A 39 AIIVGNDPASKTYVASKEKACAQVGIDSQ-------VITLPEHTTESELLELIDQLNNDSSVHAILVQ 99 (285)
T ss_dssp EEEESCCHHHHHHHHHHHHHHHHHTCEEE-------EEEECTTCCHHHHHHHHHHHHTCTTCCEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHcCCeEE-------EEECCCCCCHHHHHHHHHHHhCCCCCcEEEEc
Confidence 455676 4443 34566888874 34456678889999999999888888545544
No 57
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=34.24 E-value=51 Score=23.30 Aligned_cols=85 Identities=15% Similarity=0.255 Sum_probs=43.9
Q ss_pred cCCcEEEEEcc--hhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhh
Q psy6439 7 VKGKLLAVIGD--EDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDD 84 (114)
Q Consensus 7 ~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~ 84 (114)
++..+|+++-. .+....-.+.|++......+-++.+.+...+.+...+.++.+..+.==|||+..... ..+.++.
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~~~~~~~ 82 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG---EHDYLRT 82 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS---CCHHHHH
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC---ChHHHHH
Confidence 45678988863 222222234444432222222233444444556666777877765555777766543 2334444
Q ss_pred cC-CCccEEEE
Q psy6439 85 HT-QPIPAVLE 94 (114)
Q Consensus 85 ~~-~~~P~Iv~ 94 (114)
+. ...|+|+.
T Consensus 83 ~~~~~iPvV~~ 93 (291)
T 3egc_A 83 ELPKTFPIVAV 93 (291)
T ss_dssp SSCTTSCEEEE
T ss_pred hhccCCCEEEE
Confidence 53 67887754
No 58
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=34.18 E-value=90 Score=22.17 Aligned_cols=83 Identities=12% Similarity=0.123 Sum_probs=42.1
Q ss_pred CCcEEEEEcchh--HHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCC----Ce-EEEEEehHHHHHHHH
Q psy6439 8 KGKLLAVIGDED--TCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRD----DV-DIILINQNVAELIRH 80 (114)
Q Consensus 8 ~~~kIaVIGD~d--tv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~----di-gII~ite~~~~~i~d 80 (114)
..++|++++.+. ...--|+.|+........-.+.++..+.+.++..+.+++++++. +. ||+..++.++-.+-.
T Consensus 130 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~A~g~~~ 209 (295)
T 3hcw_A 130 GVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAIISLDAMLHLAILS 209 (295)
T ss_dssp CCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEESSHHHHHHHHH
T ss_pred CCccEEEEcCCccchhHHHHHHHHHHHHHHcCCCeeEEeccCCHHHHHHHHHHHHhhcccCCCCcEEEECChHHHHHHHH
Confidence 357899997532 12223444443221111111222233345677777788887532 34 555555555666666
Q ss_pred HHhhcCCCcc
Q psy6439 81 CIDDHTQPIP 90 (114)
Q Consensus 81 ~i~~~~~~~P 90 (114)
.+.+.....|
T Consensus 210 al~~~g~~vP 219 (295)
T 3hcw_A 210 VLYELNIEIP 219 (295)
T ss_dssp HHHHTTCCTT
T ss_pred HHHHcCCCCC
Confidence 6776654444
No 59
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure, structural genomics, NPPSFA; HET: MSE GOL; 1.73A {Thermotoga maritima MSB8} PDB: 3kbb_A*
Probab=33.85 E-value=60 Score=21.06 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=19.4
Q ss_pred cEEEEEcc-hhHHHHHhhccccce
Q psy6439 10 KLLAVIGD-EDTCVGFLLGGIGEI 32 (114)
Q Consensus 10 ~kIaVIGD-~dtv~GFrLaGi~~~ 32 (114)
.++.++|| ..-+.+.+.+|+..+
T Consensus 158 ~~~i~iGD~~~Di~~a~~aG~~~i 181 (216)
T 2pib_A 158 EKVVVFEDSKSGVEAAKSAGIERI 181 (216)
T ss_dssp GGEEEEECSHHHHHHHHHTTCCEE
T ss_pred ceEEEEeCcHHHHHHHHHcCCcEE
Confidence 55889999 677899999999876
No 60
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=33.73 E-value=1e+02 Score=21.52 Aligned_cols=87 Identities=7% Similarity=0.150 Sum_probs=39.1
Q ss_pred cCCcEEEEEcc--hhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhh
Q psy6439 7 VKGKLLAVIGD--EDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDD 84 (114)
Q Consensus 7 ~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~ 84 (114)
++..+|+++-. .+....-.+.|++......+-++.+.+...+.+...+.++.++.+.==|||+......+.+.+.+.+
T Consensus 5 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~ 84 (289)
T 1dbq_A 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEE 84 (289)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHh
Confidence 45678998863 1111112233333211111111223343345566667788887554447777654332223333332
Q ss_pred cCCCccEEEE
Q psy6439 85 HTQPIPAVLE 94 (114)
Q Consensus 85 ~~~~~P~Iv~ 94 (114)
....|+|..
T Consensus 85 -~~~iPvV~~ 93 (289)
T 1dbq_A 85 -YRHIPMVVM 93 (289)
T ss_dssp -TTTSCEEEE
T ss_pred -ccCCCEEEE
Confidence 145787664
No 61
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=33.73 E-value=69 Score=22.17 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHhhcCCCeEEEEEeh
Q psy6439 48 SVSDIEEAFRKFIKRDDVDIILINQ 72 (114)
Q Consensus 48 ~~ee~~~~l~~l~~~~digII~ite 72 (114)
+.++++++|++++++.++.+|++|-
T Consensus 53 d~~~i~~~l~~a~~~~~~DlVittG 77 (172)
T 1mkz_A 53 NRYAIRAQVSAWIASDDVQVVLITG 77 (172)
T ss_dssp CHHHHHHHHHHHHHSSSCCEEEEES
T ss_pred CHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 4689999999998765688898884
No 62
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=33.67 E-value=98 Score=21.90 Aligned_cols=86 Identities=16% Similarity=0.242 Sum_probs=39.3
Q ss_pred cCCcEEEEEcc--hhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhh
Q psy6439 7 VKGKLLAVIGD--EDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDD 84 (114)
Q Consensus 7 ~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~ 84 (114)
+++..|+++-. .+....--+.|++......+-.+.+.+.+.+.+...+.++.+..+.==|||+......+..-+.+.+
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~ 93 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKR 93 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHh
Confidence 45578998853 1222222334444321111111222333334455566778777654447777654322211122333
Q ss_pred cCCCccEEEE
Q psy6439 85 HTQPIPAVLE 94 (114)
Q Consensus 85 ~~~~~P~Iv~ 94 (114)
...|+|..
T Consensus 94 --~~iPvV~~ 101 (289)
T 2fep_A 94 --SPVPIVLA 101 (289)
T ss_dssp --SSSCEEEE
T ss_pred --cCCCEEEE
Confidence 56897664
No 63
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A
Probab=33.44 E-value=65 Score=21.90 Aligned_cols=25 Identities=20% Similarity=-0.037 Sum_probs=19.9
Q ss_pred cEEEEEcc-hhHHHHHhhccccceec
Q psy6439 10 KLLAVIGD-EDTCVGFLLGGIGEINK 34 (114)
Q Consensus 10 ~kIaVIGD-~dtv~GFrLaGi~~~~~ 34 (114)
..+.++|| ..-+.+++.+|+..+..
T Consensus 184 ~~~i~vGD~~~Di~~a~~aG~~~i~v 209 (243)
T 3qxg_A 184 DEAVVIENAPLGVEAGHKAGIFTIAV 209 (243)
T ss_dssp GGEEEEECSHHHHHHHHHTTCEEEEE
T ss_pred HHeEEEeCCHHHHHHHHHCCCEEEEE
Confidence 45789999 55688999999987543
No 64
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=33.38 E-value=1.4e+02 Score=21.93 Aligned_cols=53 Identities=9% Similarity=0.061 Sum_probs=31.9
Q ss_pred eeeecCCCCHHHHHHHHHHhhcCCCe-EEEEE-ehHHHHHHHHHHhhcCCCccEEEE
Q psy6439 40 FLVVDKNTSVSDIEEAFRKFIKRDDV-DIILI-NQNVAELIRHCIDDHTQPIPAVLE 94 (114)
Q Consensus 40 f~vv~~~~~~ee~~~~l~~l~~~~di-gII~i-te~~~~~i~d~i~~~~~~~P~Iv~ 94 (114)
+++.+...+++...+.+++++.+.++ |||.. +......+.+.+.+ ...|+|..
T Consensus 51 l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~--~~iP~v~~ 105 (385)
T 1pea_A 51 TLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVER--ADALLCYP 105 (385)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHH--TTCEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHhhCCcEEEECCCchHHHHHHHHHHHh--cCceEEEC
Confidence 34445555667777889999864554 55443 33344445555555 55787764
No 65
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=33.33 E-value=63 Score=24.87 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=36.9
Q ss_pred EEEEcc-hhHH-------HHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEe
Q psy6439 12 LAVIGD-EDTC-------VGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILIN 71 (114)
Q Consensus 12 IaVIGD-~dtv-------~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~it 71 (114)
+..+|| +++. --+.-.|++.. ++..+.+++++|+.+.++++=+++++-=|++.
T Consensus 38 vilvg~dpaS~~Yv~~k~k~~~~~Gi~~~-------~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvq 98 (285)
T 3p2o_A 38 VILVGDNPASQTYVKSKAKACEECGIKSL-------VYHLNENITQNELLALINTLNHDDSVHGILVQ 98 (285)
T ss_dssp EEEESCCHHHHHHHHHHHHHHHHHTCEEE-------EEEECTTCCHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEE-------EEECCCCCCHHHHHHHHHHHhCCCCCCEEEec
Confidence 555676 4542 34566888874 34556778889999999999888888555554
No 66
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=33.06 E-value=65 Score=19.63 Aligned_cols=39 Identities=8% Similarity=0.049 Sum_probs=26.2
Q ss_pred cEEEEEcc-hhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhh
Q psy6439 10 KLLAVIGD-EDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFI 60 (114)
Q Consensus 10 ~kIaVIGD-~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~ 60 (114)
.++.+||| ..-+.+.+-+|+..+... ...+..+.+.+++
T Consensus 92 ~~~~~vgD~~~di~~a~~~G~~~i~~~------------~~~~~~~~l~~~~ 131 (137)
T 2pr7_A 92 RDCVLVDDSILNVRGAVEAGLVGVYYQ------------QFDRAVVEIVGLF 131 (137)
T ss_dssp GGEEEEESCHHHHHHHHHHTCEEEECS------------CHHHHHHHHHHHH
T ss_pred ccEEEEcCCHHHHHHHHHCCCEEEEeC------------ChHHHHHHHHHHh
Confidence 46788999 455888999999765332 2256666666665
No 67
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=33.05 E-value=67 Score=21.45 Aligned_cols=43 Identities=14% Similarity=0.243 Sum_probs=27.1
Q ss_pred cEEEEEcc-hhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhc
Q psy6439 10 KLLAVIGD-EDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIK 61 (114)
Q Consensus 10 ~kIaVIGD-~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~ 61 (114)
.++.+||| ..-+.+.+.+|+..+.. ......+++.+.+..+.+
T Consensus 138 ~~~~~igD~~~Di~~a~~aG~~~i~v---------~~g~~~~~~~~~l~~~~~ 181 (187)
T 2wm8_A 138 SQMIFFDDERRNIVDVSKLGVTCIHI---------QNGMNLQTLSQGLETFAK 181 (187)
T ss_dssp GGEEEEESCHHHHHHHHTTTCEEEEC---------SSSCCHHHHHHHHHHHHH
T ss_pred HHEEEEeCCccChHHHHHcCCEEEEE---------CCCCChHHHHHHHHHHHH
Confidence 45778888 44456778888886533 222345677777766653
No 68
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=32.98 E-value=90 Score=21.76 Aligned_cols=83 Identities=10% Similarity=-0.106 Sum_probs=44.4
Q ss_pred CCcEEEEEcchhHHHHHhhccccceeccCCCcee--eecCCCCHHHHHHHHHHhhcC-CCe-EEEEEehHHHHHHHHHHh
Q psy6439 8 KGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFL--VVDKNTSVSDIEEAFRKFIKR-DDV-DIILINQNVAELIRHCID 83 (114)
Q Consensus 8 ~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~--vv~~~~~~ee~~~~l~~l~~~-~di-gII~ite~~~~~i~d~i~ 83 (114)
...+|++++......--|+.|+..........+. ....+.+.++..+.+++++.+ +++ ||+..++.++-.+-..+.
T Consensus 117 G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~ 196 (280)
T 3gyb_A 117 GHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSNDITAIGALGAAR 196 (280)
T ss_dssp TCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHH
Confidence 3468999998543233344444332111110011 123334567778888888764 344 555556666766666677
Q ss_pred hcCCCcc
Q psy6439 84 DHTQPIP 90 (114)
Q Consensus 84 ~~~~~~P 90 (114)
+.....|
T Consensus 197 ~~g~~vP 203 (280)
T 3gyb_A 197 ELGLRVP 203 (280)
T ss_dssp HHTCCTT
T ss_pred HcCCCCC
Confidence 7654334
No 69
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=32.93 E-value=79 Score=22.95 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHhhcCCCeEEEEEehH-------HHHHHHHHHhhcC--CCccEEEEcCC
Q psy6439 48 SVSDIEEAFRKFIKRDDVDIILINQN-------VAELIRHCIDDHT--QPIPAVLEIPS 97 (114)
Q Consensus 48 ~~ee~~~~l~~l~~~~digII~ite~-------~~~~i~d~i~~~~--~~~P~Iv~IP~ 97 (114)
+-+++.+.|+++.+++++-.|+++-+ -.+.+.+.+.+++ ...|+|..+-+
T Consensus 30 ~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~i~~~l~~~~~~~~kPVia~v~g 88 (240)
T 3rst_A 30 NHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKETKKPIYVSMGS 88 (240)
T ss_dssp CHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34899999999999999988888743 3456777777764 37899877643
No 70
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=31.18 E-value=1e+02 Score=20.84 Aligned_cols=10 Identities=10% Similarity=0.179 Sum_probs=6.7
Q ss_pred EEEEEcchhH
Q psy6439 11 LLAVIGDEDT 20 (114)
Q Consensus 11 kIaVIGD~dt 20 (114)
+|.++.|...
T Consensus 2 ~ilivdd~~~ 11 (223)
T 2hqr_A 2 RVLLIEKNSV 11 (223)
T ss_dssp CEEEECSCHH
T ss_pred EEEEEcCCHH
Confidence 5778887443
No 71
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=31.14 E-value=68 Score=21.94 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHhhcCCCeEEEEEehH
Q psy6439 48 SVSDIEEAFRKFIKRDDVDIILINQN 73 (114)
Q Consensus 48 ~~ee~~~~l~~l~~~~digII~ite~ 73 (114)
+.+.++++|++++++.++.+|++|-.
T Consensus 46 d~~~i~~~l~~~~~~~~~DlVittGG 71 (164)
T 2is8_A 46 EPPMIKKVLRLWADREGLDLILTNGG 71 (164)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 46899999999986546788988844
No 72
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=31.11 E-value=82 Score=24.27 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=36.2
Q ss_pred EEEEcc-hhHH-------HHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEe
Q psy6439 12 LAVIGD-EDTC-------VGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILIN 71 (114)
Q Consensus 12 IaVIGD-~dtv-------~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~it 71 (114)
+..+|| +++. --+.-.|++.. ++..+.+++++|+.+.++++=+++++-=|++.
T Consensus 40 vilvg~dpaS~~Yv~~k~k~~~~~Gi~~~-------~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVq 100 (286)
T 4a5o_A 40 VILVGTDPASQVYVAHKRKDCEEVGFLSQ-------AYDLPAETSQDDLLALIDRLNDDPAIDGILVQ 100 (286)
T ss_dssp EEEESCCHHHHHHHHHHHHHHHHTTCEEE-------EEEECTTCCHHHHHHHHHHHHTCTTCCEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEE-------EEECCCCCCHHHHHHHHHHHhCCCCCCEEEEc
Confidence 555676 4542 34556888874 33456678889999999999888787555544
No 73
>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6
Probab=30.87 E-value=63 Score=21.53 Aligned_cols=25 Identities=20% Similarity=0.104 Sum_probs=19.2
Q ss_pred CcEEEEEcc-hhHHHHHhhcccccee
Q psy6439 9 GKLLAVIGD-EDTCVGFLLGGIGEIN 33 (114)
Q Consensus 9 ~~kIaVIGD-~dtv~GFrLaGi~~~~ 33 (114)
...+.++|| ..-+.+.+.+|+..+.
T Consensus 170 ~~~~i~iGD~~~Di~~a~~aG~~~i~ 195 (234)
T 2hcf_A 170 PSQIVIIGDTEHDIRCARELDARSIA 195 (234)
T ss_dssp GGGEEEEESSHHHHHHHHTTTCEEEE
T ss_pred cccEEEECCCHHHHHHHHHCCCcEEE
Confidence 356889999 5667788999988653
No 74
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=30.05 E-value=41 Score=22.65 Aligned_cols=35 Identities=9% Similarity=0.203 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhcCCCeEEEEEehHHHHH--HHHHHhh
Q psy6439 50 SDIEEAFRKFIKRDDVDIILINQNVAEL--IRHCIDD 84 (114)
Q Consensus 50 ee~~~~l~~l~~~~digII~ite~~~~~--i~d~i~~ 84 (114)
+++.+.+.+.+++-++.|++++++.+.. ..+++..
T Consensus 61 ~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~ 97 (154)
T 3h16_A 61 DSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDG 97 (154)
T ss_dssp CCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHH
T ss_pred cHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHH
Confidence 5566677778888899999999997554 3444443
No 75
>2a98_A Inositol 1,4,5-trisphosphate 3-kinase C; structural genomics, structural genomics consortium, SGC, transferase; HET: I3P; 2.60A {Homo sapiens}
Probab=29.64 E-value=46 Score=25.21 Aligned_cols=42 Identities=21% Similarity=0.504 Sum_probs=28.0
Q ss_pred hHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCC
Q psy6439 19 DTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRD 63 (114)
Q Consensus 19 dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~ 63 (114)
...+|||+.|+..-....+++|- ...+.+++.++|..++...
T Consensus 123 s~~lGfRI~G~k~~~~~~~K~~g---r~~~~~~~~~~l~~F~~~~ 164 (259)
T 2a98_A 123 TSTLGFRIEGIKKADGTCNTNFK---KTQALEQVTKVLEDFVDGD 164 (259)
T ss_dssp HHHHSEEEEEEECTTSCEECCCT---TCCSHHHHHHHHHHHHTTC
T ss_pred cccCCEEEEeEEccCCCCCchhh---hcCCHHHHHHHHHHHhcCC
Confidence 35799999999963221223232 2245699999999999653
No 76
>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}
Probab=29.47 E-value=63 Score=21.41 Aligned_cols=26 Identities=8% Similarity=-0.098 Sum_probs=20.7
Q ss_pred CcEEEEEcch--hHHHHHhhccccceec
Q psy6439 9 GKLLAVIGDE--DTCVGFLLGGIGEINK 34 (114)
Q Consensus 9 ~~kIaVIGD~--dtv~GFrLaGi~~~~~ 34 (114)
-..+.+|||. .-+.+.+.+|+..+..
T Consensus 172 ~~~~~~vGD~~~~Di~~a~~aG~~~~~~ 199 (240)
T 3smv_A 172 KKDILHTAESLYHDHIPANDAGLVSAWI 199 (240)
T ss_dssp GGGEEEEESCTTTTHHHHHHHTCEEEEE
T ss_pred chhEEEECCCchhhhHHHHHcCCeEEEE
Confidence 3567899996 5799999999987653
No 77
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=29.43 E-value=29 Score=22.93 Aligned_cols=25 Identities=20% Similarity=0.563 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhcCCC-eEEEEEehH
Q psy6439 49 VSDIEEAFRKFIKRDD-VDIILINQN 73 (114)
Q Consensus 49 ~ee~~~~l~~l~~~~d-igII~ite~ 73 (114)
..++++.|+++.+.++ .|+|+++.+
T Consensus 11 ~~evEe~l~RI~~~kgV~G~iIln~~ 36 (106)
T 2hz5_A 11 MAEVEETLKRLQSQKGVQGIIVVNTE 36 (106)
T ss_dssp ----CHHHHHHHTSTTEEEEEEECTT
T ss_pred HHHHHHHHHHHhcCCCceEEEEEcCC
Confidence 4788899999987655 788888763
No 78
>1w2f_A Inositol-trisphosphate 3-kinase A; inositol phosphate kinase, transferase, calmodulin-binding; 1.8A {Homo sapiens} SCOP: d.143.1.3 PDB: 1tzd_A* 1w2d_A* 1w2c_A*
Probab=29.26 E-value=44 Score=25.56 Aligned_cols=41 Identities=22% Similarity=0.472 Sum_probs=26.9
Q ss_pred hHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcC
Q psy6439 19 DTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKR 62 (114)
Q Consensus 19 dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~ 62 (114)
...+|||+.|+..-....+++| -...+.+++.++|..++..
T Consensus 140 s~~lGfRi~G~k~~~~~~~K~~---gr~~s~~~~~~~l~~F~~~ 180 (276)
T 1w2f_A 140 STTLGFRIEGIKKADGSCSTDF---KTTRSREQVLRVFEEFVQG 180 (276)
T ss_dssp HHHHSEEEEEEECTTSCEECCC---TTCCSHHHHHHHHHHHHTT
T ss_pred cccCCEEEEEEEccCCcccchh---cccCCHHHHHHHHHHHhcC
Confidence 3579999999985321112222 1223569999999999965
No 79
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=28.86 E-value=1.7e+02 Score=21.50 Aligned_cols=87 Identities=8% Similarity=-0.022 Sum_probs=44.0
Q ss_pred CCcEEEEEcch-h-HHHHHhhccccceeccC--CCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHh
Q psy6439 8 KGKLLAVIGDE-D-TCVGFLLGGIGEINKHR--QPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCID 83 (114)
Q Consensus 8 ~~~kIaVIGD~-d-tv~GFrLaGi~~~~~~~--~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~ 83 (114)
...+|++++.+ + ...--|+.|+....... +..++ ...+.+.++..+.+++++++...||+..++.++-.+-..+.
T Consensus 183 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~v-~~~~~~~~~~~~~~~~ll~~~~~ai~~~nD~~A~g~~~al~ 261 (348)
T 3bil_A 183 NALPIGYLSGPMDTSTGRERLEDFKAACANSKIGEQLV-FLGGYEQSVGFEGATKLLDQGAKTLFAGDSMMTIGVIEACH 261 (348)
T ss_dssp TCCSEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCEE-ECCCSSHHHHHHHHHHHHHTTCSEEEESSHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCcCccEE-EcCCCCHHHHHHHHHHHHcCCCCEEEEcChHHHHHHHHHHH
Confidence 34689999764 2 12222333332211100 11122 22233557777888888875435555556666666666666
Q ss_pred hcCCCcc---EEEEc
Q psy6439 84 DHTQPIP---AVLEI 95 (114)
Q Consensus 84 ~~~~~~P---~Iv~I 95 (114)
+.....| .|+-.
T Consensus 262 ~~G~~vP~disvvG~ 276 (348)
T 3bil_A 262 KAGLVIGKDVSVIGF 276 (348)
T ss_dssp HTTCCBTTTBEEEEE
T ss_pred HcCCCCCCCeEEEEe
Confidence 6543344 45543
No 80
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=28.79 E-value=1.6e+02 Score=21.13 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=35.0
Q ss_pred eeeecCCCCHHHHHHHHHHhhcCCCeEEEE--EehHHHHHHHHHHhhcCCCccEEEEc
Q psy6439 40 FLVVDKNTSVSDIEEAFRKFIKRDDVDIIL--INQNVAELIRHCIDDHTQPIPAVLEI 95 (114)
Q Consensus 40 f~vv~~~~~~ee~~~~l~~l~~~~digII~--ite~~~~~i~d~i~~~~~~~P~Iv~I 95 (114)
+++.|...+++...+.++++++ +++..|+ .+......+.+.+.+ ...|+|.+-
T Consensus 46 l~~~d~~~~~~~~~~~~~~l~~-~~v~~iig~~~s~~~~~~~~~~~~--~~ip~v~~~ 100 (356)
T 3ipc_A 46 IVLGDDVSDPKQGISVANKFVA-DGVKFVVGHANSGVSIPASEVYAE--NGILEITPA 100 (356)
T ss_dssp EEEEECTTCHHHHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHHHHT--TTCEEEESS
T ss_pred EEEecCCCCHHHHHHHHHHHHH-CCCcEEEcCCCcHHHHHHHHHHHh--CCCeEEecC
Confidence 4555666677888889999997 5554444 345555556565665 558887754
No 81
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=28.65 E-value=68 Score=22.91 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=39.4
Q ss_pred cCCcEEEEEcch-------hHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHH
Q psy6439 7 VKGKLLAVIGDE-------DTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIR 79 (114)
Q Consensus 7 ~~~~kIaVIGD~-------dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~ 79 (114)
++...||++-.. +....-.+.|++......+-++.+.+.+.+.+.-.+.++.+..+.==|||+......+..-
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~ 99 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDDPIE 99 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTCHHH
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCcHHH
Confidence 456789988543 1122223445544221111112232332233444556676665544577776543322222
Q ss_pred HHHhhcCCCccEEEE
Q psy6439 80 HCIDDHTQPIPAVLE 94 (114)
Q Consensus 80 d~i~~~~~~~P~Iv~ 94 (114)
+.+.+ ...|+|+.
T Consensus 100 ~~l~~--~~iPvV~i 112 (305)
T 3huu_A 100 HLLNE--FKVPYLIV 112 (305)
T ss_dssp HHHHH--TTCCEEEE
T ss_pred HHHHH--cCCCEEEE
Confidence 22333 66897664
No 82
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=28.59 E-value=1e+02 Score=18.83 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=27.0
Q ss_pred CcEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHH
Q psy6439 9 GKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVA 75 (114)
Q Consensus 9 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~ 75 (114)
..+|.++.|.....-..-.-++.. +|-+... ....+++. ++.+..+.+|++.-.+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~----~~~~~a~~-~l~~~~~dlvi~D~~l~ 61 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPL------DVTIQCF----ASAESFMR-QQISDDAIGMIIEAHLE 61 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTS------SSEEEEE----SSHHHHTT-SCCCTTEEEEEEETTGG
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHC------CcEEEEe----CCHHHHHH-HHhccCCCEEEEeCcCC
Confidence 578999998554333211111110 0212211 22333444 34567789999975543
No 83
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=28.37 E-value=1.1e+02 Score=19.76 Aligned_cols=13 Identities=15% Similarity=0.434 Sum_probs=10.4
Q ss_pred CcEEEEEcchhHH
Q psy6439 9 GKLLAVIGDEDTC 21 (114)
Q Consensus 9 ~~kIaVIGD~dtv 21 (114)
..+|.++||+=|.
T Consensus 2 ~~~i~~~GDSit~ 14 (185)
T 3hp4_A 2 DNTILILGDXLSA 14 (185)
T ss_dssp CEEEEEEECTTTT
T ss_pred CCeEEEECCcccc
Confidence 4689999998664
No 84
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=28.01 E-value=67 Score=22.71 Aligned_cols=86 Identities=15% Similarity=0.245 Sum_probs=31.7
Q ss_pred cCCcEEEEEcc--hhHHHHHhhccccceeccCCCceeee-cCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHh
Q psy6439 7 VKGKLLAVIGD--EDTCVGFLLGGIGEINKHRQPNFLVV-DKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCID 83 (114)
Q Consensus 7 ~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~nf~vv-~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~ 83 (114)
++..+|+++-. .+....-.+.|++......+-++.+. +.+.+.+...+.++.+..+.==|||+......+..-+.+.
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~ 85 (290)
T 3clk_A 6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALTDDNLQLLQ 85 (290)
T ss_dssp --CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC----CHHHHH
T ss_pred ccCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCCHHHHHHHH
Confidence 45678999853 11122222334433211111112232 2222234444567777755444777765443322222233
Q ss_pred hcCCCccEEEE
Q psy6439 84 DHTQPIPAVLE 94 (114)
Q Consensus 84 ~~~~~~P~Iv~ 94 (114)
+ ...|+|+.
T Consensus 86 ~--~~iPvV~~ 94 (290)
T 3clk_A 86 S--SDVPYCFL 94 (290)
T ss_dssp C--C--CEEEE
T ss_pred h--CCCCEEEE
Confidence 2 56787664
No 85
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=27.36 E-value=1.8e+02 Score=21.05 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHhhcCCCe-EEEEEehHHHHHHHHHHhhcCCCcc---EEEEc
Q psy6439 47 TSVSDIEEAFRKFIKRDDV-DIILINQNVAELIRHCIDDHTQPIP---AVLEI 95 (114)
Q Consensus 47 ~~~ee~~~~l~~l~~~~di-gII~ite~~~~~i~d~i~~~~~~~P---~Iv~I 95 (114)
.+.++..+.+++++++ +. ||+..++.++-.+-..+.+.....| .|+-.
T Consensus 223 ~~~~~~~~~~~~ll~~-~~~ai~~~~d~~A~g~~~al~~~G~~vP~disvig~ 274 (332)
T 2o20_A 223 YSYEQGKALAERLLER-GATSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISG 274 (332)
T ss_dssp CSHHHHHHHHHHHHHT-TCCEEEESCHHHHHHHHHHHHHTTCCTTTTCEEEES
T ss_pred CCHHHHHHHHHHHhcc-CCCEEEECChHHHHHHHHHHHHcCCCCccCEEEEEe
Confidence 3456777788888876 44 5555566666666666666543334 45543
No 86
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=27.18 E-value=1.5e+02 Score=20.94 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=33.7
Q ss_pred cccCCcEEEEEcchhHHH-------H------HhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEe
Q psy6439 5 SAVKGKLLAVIGDEDTCV-------G------FLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILIN 71 (114)
Q Consensus 5 ~~~~~~kIaVIGD~dtv~-------G------FrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~it 71 (114)
.+.+..|++||.=-|.+. | ++-.|++... +.++.+ +.+++++++++++. .++-+|+.|
T Consensus 26 ~~~~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~------~~iv~D--d~~~I~~al~~a~~-~~~DlVItt 96 (185)
T 3rfq_A 26 AELVVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDG------VVAVEA--DEVDIRNALNTAVI-GGVDLVVSV 96 (185)
T ss_dssp ---CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEE------EEEECS--CHHHHHHHHHHHHH-TTCSEEEEE
T ss_pred cCCCCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEE------EEEeCC--CHHHHHHHHHHHHh-CCCCEEEEC
Confidence 344566777765433332 2 2334555432 334443 46889999998873 467788887
Q ss_pred hH
Q psy6439 72 QN 73 (114)
Q Consensus 72 e~ 73 (114)
-.
T Consensus 97 GG 98 (185)
T 3rfq_A 97 GG 98 (185)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 87
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=27.16 E-value=1.5e+02 Score=20.62 Aligned_cols=84 Identities=12% Similarity=0.149 Sum_probs=40.8
Q ss_pred CcEEEEEcch--hHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHH-----HHHHHHH
Q psy6439 9 GKLLAVIGDE--DTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNV-----AELIRHC 81 (114)
Q Consensus 9 ~~kIaVIGD~--dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~-----~~~i~d~ 81 (114)
.+.|+++-.. +....-.+.|++......+-++.+.+...+.+.-.+.++.+..+.==|||+...+. ....-+.
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 94 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLN 94 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHH
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHH
Confidence 3788888542 11222223444432211122233444444556667778888765555777765321 1111122
Q ss_pred HhhcCCCccEEEE
Q psy6439 82 IDDHTQPIPAVLE 94 (114)
Q Consensus 82 i~~~~~~~P~Iv~ 94 (114)
+.+ ...|+|+.
T Consensus 95 ~~~--~~iPvV~~ 105 (298)
T 3tb6_A 95 LEK--NGIPFAMI 105 (298)
T ss_dssp HHH--TTCCEEEE
T ss_pred HHh--cCCCEEEE
Confidence 333 56887765
No 88
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=26.85 E-value=1.3e+02 Score=21.89 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=37.3
Q ss_pred CCcEEEEEcchhH--------HHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEeh
Q psy6439 8 KGKLLAVIGDEDT--------CVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQ 72 (114)
Q Consensus 8 ~~~kIaVIGD~dt--------v~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite 72 (114)
+.++.+++|++-+ -..|+..|++..|. ..+ .+++++.++++.+. +.++.=+.+|-
T Consensus 11 ~t~~~~liG~pi~hs~sp~~h~~~~~~~g~~~~y~-------~~~--~~~~~l~~~i~~l~-~~~~~G~nvti 73 (275)
T 2hk9_A 11 QTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYL-------AFE--INPEELKKAFEGFK-ALKVKGINVTV 73 (275)
T ss_dssp TCEEEEEEESSCTTCSHHHHHHHHHHHHTCSEEEE-------EEE--CCGGGHHHHHHHHH-HHTCCEEEECT
T ss_pred CceEEEEECCCcccccCHHHHHHHHHHcCCCcEEE-------EEE--CCHHHHHHHHHHHH-hCCCCEEEECc
Confidence 3467899999732 15899999998654 222 24588888888775 34565666663
No 89
>2aqx_A Predicted: inositol 1,4,5-trisphosphate 3-kinase; IP3K, ITPKB, IP3-3K, IP3-3KB, IP3, calmodu binding, transferase; HET: ATP; 2.50A {Mus musculus}
Probab=26.73 E-value=55 Score=25.25 Aligned_cols=41 Identities=29% Similarity=0.542 Sum_probs=27.2
Q ss_pred hHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcC
Q psy6439 19 DTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKR 62 (114)
Q Consensus 19 dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~ 62 (114)
...+|||+.|+..-....+++| -...+.+++.++|..++..
T Consensus 153 s~~LGfRI~G~kv~~~~~~K~~---gr~~t~e~~~~~l~~F~~~ 193 (289)
T 2aqx_A 153 TATLGFRIEGIKKEDGSVNRDF---KKTKTREQVTEAFREFTKG 193 (289)
T ss_dssp HHHHSEEEEEEECTTSCEECCC---TTCCSHHHHHHHHHHHHTT
T ss_pred cccCCEEEEEEEecCCCCCCcc---cccCCHHHHHHHHHHHhcC
Confidence 3569999999996321112222 1224569999999999865
No 90
>4frf_A Inositol polyphosphate multikinase alpha; ATP grAsp, inositol phosphate kinase, transferase; 2.90A {Arabidopsis thaliana}
Probab=26.64 E-value=23 Score=26.83 Aligned_cols=43 Identities=21% Similarity=0.475 Sum_probs=28.0
Q ss_pred HHHHhhccccceeccCCCceeeecC----CCCHHHHHHHHHHhhcCCC
Q psy6439 21 CVGFLLGGIGEINKHRQPNFLVVDK----NTSVSDIEEAFRKFIKRDD 64 (114)
Q Consensus 21 v~GFrLaGi~~~~~~~~~nf~vv~~----~~~~ee~~~~l~~l~~~~d 64 (114)
-+|||+.|++. +..+...|...+. ..+.+++.++|.+++.+..
T Consensus 118 sLGfRi~Gm~v-y~~~~~~~~~~dK~~Gr~l~~~~~~~~l~~F~~~~~ 164 (275)
T 4frf_A 118 SSGFRISGFEV-YDHKESSFWKPERKLLRGLDVDGARLTLRKFVSSNS 164 (275)
T ss_dssp HSSEEEEEEEE-EETTTTEEECCCHHHHHTCCHHHHHHHHHHTTCSCC
T ss_pred ccceEEEEEEE-ecCCCCcceecchhHhccCCHHHHHHHHHHHhcCCc
Confidence 57999999986 3333223444321 2245889999999986544
No 91
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=25.95 E-value=1.6e+02 Score=20.48 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=45.2
Q ss_pred CCcEEEEEcchh--HHHHHhhccccceeccCCCce---eeecCCCCHHHHHHHHHHhhcCC-Ce-EEEEEehHHHHHHHH
Q psy6439 8 KGKLLAVIGDED--TCVGFLLGGIGEINKHRQPNF---LVVDKNTSVSDIEEAFRKFIKRD-DV-DIILINQNVAELIRH 80 (114)
Q Consensus 8 ~~~kIaVIGD~d--tv~GFrLaGi~~~~~~~~~nf---~vv~~~~~~ee~~~~l~~l~~~~-di-gII~ite~~~~~i~d 80 (114)
..++|++++.+. ...--|+.|+..........+ .+...+.+.++..+.+.+++++. ++ ||+..++.++..+-.
T Consensus 126 G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 205 (289)
T 3g85_A 126 RYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALFCNSDSIALGVIS 205 (289)
T ss_dssp TCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHH
T ss_pred CCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEEEcCCHHHHHHHH
Confidence 346899997632 222234444433221111001 12233446688888899998653 34 566566667777777
Q ss_pred HHhhcCCCcc
Q psy6439 81 CIDDHTQPIP 90 (114)
Q Consensus 81 ~i~~~~~~~P 90 (114)
.+.+.....|
T Consensus 206 al~~~g~~vP 215 (289)
T 3g85_A 206 VLNKRQISIP 215 (289)
T ss_dssp HHHHTTCCTT
T ss_pred HHHHcCCCCC
Confidence 7777653334
No 92
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=25.85 E-value=88 Score=22.20 Aligned_cols=26 Identities=12% Similarity=0.304 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhcCCCeEEEEEehHHH
Q psy6439 50 SDIEEAFRKFIKRDDVDIILINQNVA 75 (114)
Q Consensus 50 ee~~~~l~~l~~~~digII~ite~~~ 75 (114)
+++...|.+.++.-.++|++++++++
T Consensus 50 ~~i~~~l~~aIe~Sri~IvV~S~ny~ 75 (176)
T 3jrn_A 50 QRFSPELKSPIEVSRFAVVVVSENYA 75 (176)
T ss_dssp ---------CCTTEEEEEEEECTTTT
T ss_pred CchHHHHHHHHHhCCEEEEEecCCcC
Confidence 55666777788888999999999854
No 93
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=25.46 E-value=1.6e+02 Score=21.58 Aligned_cols=85 Identities=12% Similarity=0.152 Sum_probs=37.1
Q ss_pred CCcEEEEEcc--hhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhhc
Q psy6439 8 KGKLLAVIGD--EDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDDH 85 (114)
Q Consensus 8 ~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~~ 85 (114)
+...|+++-. .+....-.+.|++......+-+..+.+.+.+.+...+.++.+..+.==|||+......+..-+.+.+
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~- 143 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPNEECANQLEDLQK- 143 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCCGGGHHHHHHHHH-
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHh-
Confidence 4567988853 1222222334444321111111223233334455556677777554447777764432222222333
Q ss_pred CCCccEEEE
Q psy6439 86 TQPIPAVLE 94 (114)
Q Consensus 86 ~~~~P~Iv~ 94 (114)
...|+|+.
T Consensus 144 -~~iPvV~i 151 (348)
T 3bil_A 144 -QGMPVVLV 151 (348)
T ss_dssp -C-CCEEEE
T ss_pred -CCCCEEEE
Confidence 56897764
No 94
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=25.19 E-value=91 Score=22.84 Aligned_cols=51 Identities=12% Similarity=0.262 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEehHH--HHHHHHHHhhc--CCCccEEEEcCCCC
Q psy6439 49 VSDIEEAFRKFIKRDDVDIILINQNV--AELIRHCIDDH--TQPIPAVLEIPSKD 99 (114)
Q Consensus 49 ~ee~~~~l~~l~~~~digII~ite~~--~~~i~d~i~~~--~~~~P~Iv~IP~~~ 99 (114)
++-+++.|++-+.+-+.-|++|++.. ..-++-||+.- +...|+|+.-|+.+
T Consensus 66 e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~~~~~PII~Vy~~~~ 120 (189)
T 3hyn_A 66 EKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIGTKGLPVIVIYPDYD 120 (189)
T ss_dssp TTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTTTTCCCEEEEETTCC
T ss_pred HHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHHhcCCcEEEEECCcc
Confidence 57899999999999999999999884 33455555553 37799999999965
No 95
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=25.06 E-value=1.7e+02 Score=20.21 Aligned_cols=86 Identities=14% Similarity=0.170 Sum_probs=38.5
Q ss_pred cCCcEEEEEcch----hHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHH-HHHHHH
Q psy6439 7 VKGKLLAVIGDE----DTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVA-ELIRHC 81 (114)
Q Consensus 7 ~~~~kIaVIGD~----dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~-~~i~d~ 81 (114)
++..+|+++-.. +....--+.|++......+-++.+.+...+.+...+.++.++.+.==|||+...... +.++ .
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~-~ 95 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEID-D 95 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSCHHHHH-H
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCChHHHH-H
Confidence 345789998543 111111233333211111111333343344555667788887654447777654322 2222 2
Q ss_pred HhhcCCCccEEEE
Q psy6439 82 IDDHTQPIPAVLE 94 (114)
Q Consensus 82 i~~~~~~~P~Iv~ 94 (114)
+.+. ...|+|..
T Consensus 96 l~~~-~~iPvV~~ 107 (296)
T 3brq_A 96 IIDA-HSQPIMVL 107 (296)
T ss_dssp HHHT-CSSCEEEE
T ss_pred HHhc-CCCCEEEE
Confidence 2221 45787664
No 96
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=25.03 E-value=1.8e+02 Score=20.35 Aligned_cols=84 Identities=12% Similarity=0.145 Sum_probs=38.4
Q ss_pred cCCcEEEEEcc--hhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHH-HHHHHHHh
Q psy6439 7 VKGKLLAVIGD--EDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVA-ELIRHCID 83 (114)
Q Consensus 7 ~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~-~~i~d~i~ 83 (114)
++..+|+++-. .+....--+.|++......+-++.+.+.+.+.+...+.++.+..+.==|||+...... +.++ .+.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~-~l~ 84 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSELPELQ-NII 84 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGGHHHHH-HHH
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHH-HHh
Confidence 45678999864 1111112233433311111111223333334455566778777554447777654332 2232 232
Q ss_pred hcCCCccEEEE
Q psy6439 84 DHTQPIPAVLE 94 (114)
Q Consensus 84 ~~~~~~P~Iv~ 94 (114)
...|+|..
T Consensus 85 ---~~iPvV~~ 92 (285)
T 3c3k_A 85 ---GAFPWVQC 92 (285)
T ss_dssp ---TTSSEEEE
T ss_pred ---cCCCEEEE
Confidence 34787764
No 97
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=24.99 E-value=98 Score=22.54 Aligned_cols=49 Identities=10% Similarity=0.267 Sum_probs=28.3
Q ss_pred cCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhhcCCCccEEEE
Q psy6439 44 DKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDDHTQPIPAVLE 94 (114)
Q Consensus 44 ~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~~~~~~P~Iv~ 94 (114)
+.+.+.+.-.+.++.++.+.==|||+......+...+.+.+ ...|+|+.
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~--~~iPvV~~ 147 (339)
T 3h5o_A 99 NSHYDAGQELQLLRAYLQHRPDGVLITGLSHAEPFERILSQ--HALPVVYM 147 (339)
T ss_dssp ECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCTTHHHHHHH--TTCCEEEE
T ss_pred eCCCChHHHHHHHHHHHcCCCCEEEEeCCCCCHHHHHHHhc--CCCCEEEE
Confidence 33334566667788887665558888764432222233333 66897765
No 98
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=24.92 E-value=1.1e+02 Score=24.71 Aligned_cols=28 Identities=7% Similarity=0.087 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHhhcCCCeEEEEEehHH
Q psy6439 47 TSVSDIEEAFRKFIKRDDVDIILINQNV 74 (114)
Q Consensus 47 ~~~ee~~~~l~~l~~~~digII~ite~~ 74 (114)
-+.+++.+.+++.+++..++||+++|.+
T Consensus 222 f~~~~~~~~i~~~~~~~~~~iIvVaEG~ 249 (419)
T 3hno_A 222 FDKQKFLAKVDSCVKKFGYCSVVVSEGV 249 (419)
T ss_dssp CCHHHHHHHHHHHHHHHSCEEEEEETTC
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 4567788888888877889999999874
No 99
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=24.83 E-value=1.7e+02 Score=20.14 Aligned_cols=85 Identities=14% Similarity=0.288 Sum_probs=37.9
Q ss_pred cCCcEEEEEcc--hhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhh
Q psy6439 7 VKGKLLAVIGD--EDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDD 84 (114)
Q Consensus 7 ~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~ 84 (114)
++...||++-. .+....=.+.|++......+-++.+.+...+.+.-.+.++.+..+.==|||+... -.+.++..+.+
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~-~~~~~~~~l~~ 84 (277)
T 3e61_A 6 RKSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAF-NENIIENTLTD 84 (277)
T ss_dssp ----CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGG-GHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC-ChHHHHHHHHc
Confidence 44577888753 2222222344444322212222334444445566667777777655457776652 22222202333
Q ss_pred cCCCccEEEE
Q psy6439 85 HTQPIPAVLE 94 (114)
Q Consensus 85 ~~~~~P~Iv~ 94 (114)
...|+|+.
T Consensus 85 --~~iPvV~~ 92 (277)
T 3e61_A 85 --HHIPFVFI 92 (277)
T ss_dssp --C-CCEEEG
T ss_pred --CCCCEEEE
Confidence 56887653
No 100
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.78 E-value=59 Score=20.46 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=26.0
Q ss_pred CCCeEEEEEehHHHHHHHHHHhhc--CCCccEEEEcCCCC
Q psy6439 62 RDDVDIILINQNVAELIRHCIDDH--TQPIPAVLEIPSKD 99 (114)
Q Consensus 62 ~~digII~ite~~~~~i~d~i~~~--~~~~P~Iv~IP~~~ 99 (114)
+....++++.++..+.....+..+ ....|.+...+++.
T Consensus 29 ~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~ 68 (99)
T 3j21_Z 29 TGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSV 68 (99)
T ss_dssp HTCCSEEEEECCCCHHHHHHHHHHHHHTTCCEEEECCCSC
T ss_pred cCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHH
Confidence 466778888888776666666554 25678777666665
No 101
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=24.57 E-value=1.1e+02 Score=21.14 Aligned_cols=84 Identities=10% Similarity=0.099 Sum_probs=38.9
Q ss_pred CcEEEEEcch--hHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehH-HHHHHHHHHhhc
Q psy6439 9 GKLLAVIGDE--DTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQN-VAELIRHCIDDH 85 (114)
Q Consensus 9 ~~kIaVIGD~--dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~-~~~~i~d~i~~~ 85 (114)
++.||++-.. +.-..-.+.|++......+-++.+.+.+.+.+.-.+.++.+..+.==|||+.... .....-+.+.+
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~- 80 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQD- 80 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHH-
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHHH-
Confidence 4567777542 2222223444443222112223333443445666677777776544577766433 11111122333
Q ss_pred CCCccEEEE
Q psy6439 86 TQPIPAVLE 94 (114)
Q Consensus 86 ~~~~P~Iv~ 94 (114)
...|+|+.
T Consensus 81 -~~iPvV~~ 88 (272)
T 3o74_A 81 -KGLPVIAI 88 (272)
T ss_dssp -TTCCEEEE
T ss_pred -cCCCEEEE
Confidence 66887654
No 102
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=24.31 E-value=1.8e+02 Score=20.98 Aligned_cols=87 Identities=9% Similarity=0.027 Sum_probs=38.6
Q ss_pred cCCcEEEEEcch--hHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCC--CeEEEEEehHHHHHHHHHH
Q psy6439 7 VKGKLLAVIGDE--DTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRD--DVDIILINQNVAELIRHCI 82 (114)
Q Consensus 7 ~~~~kIaVIGD~--dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~--digII~ite~~~~~i~d~i 82 (114)
.+..+|+++-.. +....-.+.|++......+-++.+.+.+.+.+.-.+.++.++.+. ==|||+...... ...+.+
T Consensus 3 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~-~~~~~~ 81 (332)
T 2rjo_A 3 LGQTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSA-DARVIV 81 (332)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHH-HHHHHH
T ss_pred CCccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHH-HHHHHH
Confidence 346789988541 111111223333211111111233333334455566788887654 336666553322 122223
Q ss_pred hhcC-CCccEEEE
Q psy6439 83 DDHT-QPIPAVLE 94 (114)
Q Consensus 83 ~~~~-~~~P~Iv~ 94 (114)
..+. ...|+|..
T Consensus 82 ~~~~~~~iPvV~~ 94 (332)
T 2rjo_A 82 EACSKAGAYVTTI 94 (332)
T ss_dssp HHHHHHTCEEEEE
T ss_pred HHHHHCCCeEEEE
Confidence 3332 45787654
No 103
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=24.30 E-value=1.7e+02 Score=24.05 Aligned_cols=51 Identities=8% Similarity=0.154 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHhhcCCCeEEEEE--e----------hHHHHHHHHHHhhcCCCcc--EEEEcCCC
Q psy6439 48 SVSDIEEAFRKFIKRDDVDIILI--N----------QNVAELIRHCIDDHTQPIP--AVLEIPSK 98 (114)
Q Consensus 48 ~~ee~~~~l~~l~~~~digII~i--t----------e~~~~~i~d~i~~~~~~~P--~Iv~IP~~ 98 (114)
+++...++|+.++++++++.|++ . +.+++.+.+...+.....| ++..+.+.
T Consensus 312 d~~~~~~al~~~l~D~~vd~vlv~~v~~~~~~~d~~~~~a~ai~~~~~~~~~~kp~v~v~~~~g~ 376 (480)
T 3dmy_A 312 DPTLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGT 376 (480)
T ss_dssp CCHHHHHHHHHGGGCTTEEEEEEEEECSTTSCSCHHHHHHHHHHHHHHTSCTTSCCEEEEEEESC
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEEeecCCCCCCChHHHHHHHHHHHHHhccCCCCeEEEEEecCc
Confidence 34788999999999999998877 1 4556666554444212577 44445443
No 104
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=24.08 E-value=1e+02 Score=20.22 Aligned_cols=30 Identities=7% Similarity=0.200 Sum_probs=22.8
Q ss_pred cCCCCHHHHHHHHHHhhcCCC--eEEEEEehH
Q psy6439 44 DKNTSVSDIEEAFRKFIKRDD--VDIILINQN 73 (114)
Q Consensus 44 ~~~~~~ee~~~~l~~l~~~~d--igII~ite~ 73 (114)
.++.+.+++.+.+++++++-+ =|+|++++=
T Consensus 36 ~~~~~~~~~~~~i~~~i~~~~~~~gvliLtDl 67 (135)
T 1pdo_A 36 VPGENAETLIEKYNAQLAKLDTTKGVLFLVDT 67 (135)
T ss_dssp CTTCCHHHHHHHHHHHHTTSCCTTCEEEEESS
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 556677889999999887643 389999865
No 105
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=24.04 E-value=1.6e+02 Score=20.61 Aligned_cols=80 Identities=19% Similarity=0.269 Sum_probs=40.5
Q ss_pred cCCcEEEEEcch--hHHHHHhhccccceeccCCCc-eeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHh
Q psy6439 7 VKGKLLAVIGDE--DTCVGFLLGGIGEINKHRQPN-FLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCID 83 (114)
Q Consensus 7 ~~~~kIaVIGD~--dtv~GFrLaGi~~~~~~~~~n-f~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~ 83 (114)
++...||++-.. +....--+.|++......+-+ +.+.+...+.+.-.+.++.+..+.==|||+.. +.+.
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~--------~~~~ 79 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA--------FTIP 79 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC--------CCCC
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc--------hHHH
Confidence 456789988542 222222344444322111111 22223333445556667777765555777777 2344
Q ss_pred hcC-CCccEEEE
Q psy6439 84 DHT-QPIPAVLE 94 (114)
Q Consensus 84 ~~~-~~~P~Iv~ 94 (114)
.+. ...|+|+.
T Consensus 80 ~~~~~~iPvV~~ 91 (277)
T 3hs3_A 80 PNFHLNTPLVMY 91 (277)
T ss_dssp TTCCCSSCEEEE
T ss_pred HHHhCCCCEEEE
Confidence 443 66887654
No 106
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=23.78 E-value=95 Score=21.19 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHhhcCCCeEEEEEehH
Q psy6439 48 SVSDIEEAFRKFIKRDDVDIILINQN 73 (114)
Q Consensus 48 ~~ee~~~~l~~l~~~~digII~ite~ 73 (114)
+.++++++|+++++..++-+|+.|-.
T Consensus 55 d~~~i~~~l~~~~~~~~~DlVittGG 80 (167)
T 1uuy_A 55 EVERIKDILQKWSDVDEMDLILTLGG 80 (167)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 46899999999986556889988843
No 107
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=23.72 E-value=2.2e+02 Score=20.93 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=23.9
Q ss_pred HHHhhcCCCeEEEEEehHH---HHHHHHHHhhcCCCccEEEEcCC
Q psy6439 56 FRKFIKRDDVDIILINQNV---AELIRHCIDDHTQPIPAVLEIPS 97 (114)
Q Consensus 56 l~~l~~~~digII~ite~~---~~~i~d~i~~~~~~~P~Iv~IP~ 97 (114)
++++++++++-+|+|+-.- ++.....+ +...+++++=|.
T Consensus 58 ~~~ll~~~~~D~V~i~tp~~~h~~~~~~al---~aGkhVl~EKP~ 99 (336)
T 2p2s_A 58 AEQLITDASIDLIACAVIPCDRAELALRTL---DAGKDFFTAKPP 99 (336)
T ss_dssp HHHHHTCTTCCEEEECSCGGGHHHHHHHHH---HTTCEEEECSSC
T ss_pred HHHHhhCCCCCEEEEeCChhhHHHHHHHHH---HCCCcEEEeCCC
Confidence 4677877788888777442 33333333 345678877664
No 108
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=23.63 E-value=87 Score=21.15 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=35.6
Q ss_pred EEEEcchh-HHHHHh-----hccccceeccCCCceeeecCCCCHHHHHHHHHHhhcC----CCeEEEEEehH
Q psy6439 12 LAVIGDED-TCVGFL-----LGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKR----DDVDIILINQN 73 (114)
Q Consensus 12 IaVIGD~d-tv~GFr-----LaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~----~digII~ite~ 73 (114)
|.+++=-. +..|+. ++|-+.+. .+-..++++.+++.+.+++++++ .+=|++++++=
T Consensus 7 iiIvtHG~s~A~~l~~~a~~i~G~~~~~------aid~~~~~~~~~~~~~i~~~i~~~~~d~g~GVLiL~Dm 72 (139)
T 3gdw_A 7 VFVLMHGDSTASSMLKTAQELLGTSIGT------AMNMPLTMEVQTMYEQLRNQVITQKESLNNGILLLTDM 72 (139)
T ss_dssp EEEEEESSSHHHHHHHHHHHHHTCCCCE------EEEECTTSCHHHHHHHHHHHHHTSTGGGTTCEEEEECS
T ss_pred EEEEcCCHHHHHHHHHHHHHHcCcccEE------EEEccCCCCHHHHHHHHHHHHHhhcCCCCCCEEEEEeC
Confidence 44444444 555553 45654322 23446777889999999999865 34589999864
No 109
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=23.59 E-value=1.9e+02 Score=20.20 Aligned_cols=49 Identities=10% Similarity=0.064 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHhhc-CC--Ce-EEEEEehHHHHHHHHHHhhcCCCcc---EEEEc
Q psy6439 47 TSVSDIEEAFRKFIK-RD--DV-DIILINQNVAELIRHCIDDHTQPIP---AVLEI 95 (114)
Q Consensus 47 ~~~ee~~~~l~~l~~-~~--di-gII~ite~~~~~i~d~i~~~~~~~P---~Iv~I 95 (114)
.+.++..+.++++++ +. ++ ||+..++.++-.+-..+.+.....| .|+-.
T Consensus 168 ~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~G~~vP~di~vig~ 223 (287)
T 3bbl_A 168 GTFEVGRAMTLHLLDLSPERRPTAIMTLNDTMAIGAMAAARERGLTIGTDLAIIGF 223 (287)
T ss_dssp SSHHHHHHHHHHHHTSCTTTSCSEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEE
T ss_pred CCHHHHHHHHHHHHhhCCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCCEEEEEE
Confidence 355777788888886 43 44 5555566666666666666543344 45544
No 110
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=23.47 E-value=2.3e+02 Score=20.97 Aligned_cols=84 Identities=6% Similarity=0.025 Sum_probs=52.6
Q ss_pred cCCcEEEEEcch---hHHHHHhhccccceeccCCCceeeecCCC-CHHHHHHHHHHhhcCCCeEEEEE--ehHHHHHHHH
Q psy6439 7 VKGKLLAVIGDE---DTCVGFLLGGIGEINKHRQPNFLVVDKNT-SVSDIEEAFRKFIKRDDVDIILI--NQNVAELIRH 80 (114)
Q Consensus 7 ~~~~kIaVIGD~---dtv~GFrLaGi~~~~~~~~~nf~vv~~~~-~~ee~~~~l~~l~~~~digII~i--te~~~~~i~d 80 (114)
...-||+++.+. ....||+|| ++.+....+=.+++.|.+. ++.++.++..+++++ ++..|+= +......+..
T Consensus 8 ~~~ikIG~~~~~sg~~~~~a~~lA-v~~iN~~g~l~~~~~D~~~~d~~~a~~~~~~l~~~-~V~aiiG~~~S~~~~a~~~ 85 (384)
T 3saj_A 8 PNNIQIGGLFPNQQSQEHAAFRFA-LSQLTEPPKLLPQIDIVNISDSFEMTYRFCSQFSK-GVYAIFGFYERRTVNMLTS 85 (384)
T ss_dssp CSEEEEEEEESCSSSHHHHHHHHH-HTTCCSSSEEEEEEEECCTTCHHHHHHHHHHHHHT-TCSCEEECCCHHHHHHHHH
T ss_pred CcceeEEEEecCCCHHHHHHHHHH-HHHHhcCCccceeeEecccCchhhHHHHHHHHHhc-CeEEEECCCCHHHHHHHHH
Confidence 345789999773 788999987 4443322111144555443 778888999999965 5544442 3445556666
Q ss_pred HHhhcCCCccEEEE
Q psy6439 81 CIDDHTQPIPAVLE 94 (114)
Q Consensus 81 ~i~~~~~~~P~Iv~ 94 (114)
...++ ..|.|-+
T Consensus 86 ~~~~~--~iP~is~ 97 (384)
T 3saj_A 86 FCGAL--HVCFITP 97 (384)
T ss_dssp HHHHH--TCCEEEC
T ss_pred HhccC--CCCeEec
Confidence 66664 4787754
No 111
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=23.40 E-value=47 Score=21.37 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=23.4
Q ss_pred HHHhhccccceeccCCCceeeecC--CCCHHHHHHHHHHhhc
Q psy6439 22 VGFLLGGIGEINKHRQPNFLVVDK--NTSVSDIEEAFRKFIK 61 (114)
Q Consensus 22 ~GFrLaGi~~~~~~~~~nf~vv~~--~~~~ee~~~~l~~l~~ 61 (114)
-=|++-||++++... ||+.|+. +.+=++++..+...+.
T Consensus 44 ~LF~i~gVk~Vf~g~--dFITVtK~~~~dW~~ikp~V~~~I~ 83 (91)
T 1pqx_A 44 DILKVEGVKSIFHVM--DFISVDKENDANWETVLPKVEAVFE 83 (91)
T ss_dssp HHHHSTTEEEEEEET--TEEEEEECTTSCSTTTHHHHHHHTC
T ss_pred HhhCCCCeeEEEEeC--CEEEEecCCCCCHHHHHHHHHHHHH
Confidence 347788888887765 4888744 2334555555555553
No 112
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=22.98 E-value=1.4e+02 Score=20.15 Aligned_cols=57 Identities=19% Similarity=0.361 Sum_probs=35.1
Q ss_pred EEEEEcchhHHHHHh-----hcccc-ceeccCCCceeeecCCCCHHHHHHHHHHhhcC---CCeEEEEEehH
Q psy6439 11 LLAVIGDEDTCVGFL-----LGGIG-EINKHRQPNFLVVDKNTSVSDIEEAFRKFIKR---DDVDIILINQN 73 (114)
Q Consensus 11 kIaVIGD~dtv~GFr-----LaGi~-~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~---~digII~ite~ 73 (114)
.|.+++=-.+..|++ ++|-. .+. .+...++.+.+++.+.+++++++ .+=|+|++|+=
T Consensus 5 giii~sHG~~A~gl~~~~~~i~G~~~~v~------av~~~~~~~~~~~~~~i~~~i~~~~~~~~gvliLtDl 70 (144)
T 3lfh_A 5 FVLIITHGDFGKGLLSGAEVIIGKQENVH------TVGLNLGDNIEVVRKEVEKIIKEKLQEDKEIIIVVDL 70 (144)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHCCCSSEE------EEEECTTCCHHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred eEEEEeCcHHHHHHHHHHHHHcCCCCcEE------EEEccCCCCHHHHHHHHHHHHHHhhCCCCcEEEEEeC
Confidence 455555555666664 45542 211 23346667778888888887753 35689999865
No 113
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=22.95 E-value=1.5e+02 Score=21.45 Aligned_cols=86 Identities=19% Similarity=0.344 Sum_probs=39.0
Q ss_pred cCCcEEEEEcch--hHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhh
Q psy6439 7 VKGKLLAVIGDE--DTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDD 84 (114)
Q Consensus 7 ~~~~kIaVIGD~--dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~ 84 (114)
++...|+++-.. +....--+.|++......+-+..+.+...+.+...+.++.+..+.==|||+......+..-+.+.+
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~ 140 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKN 140 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSSCCCHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHh
Confidence 346789988531 112222334444321111111223333334455556777777554447777653221211122323
Q ss_pred cCCCccEEEE
Q psy6439 85 HTQPIPAVLE 94 (114)
Q Consensus 85 ~~~~~P~Iv~ 94 (114)
...|+|+.
T Consensus 141 --~~iPvV~~ 148 (332)
T 2o20_A 141 --SRTPVVLV 148 (332)
T ss_dssp --HCCCEEEE
T ss_pred --CCCCEEEE
Confidence 45787664
No 114
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}
Probab=22.88 E-value=85 Score=20.73 Aligned_cols=25 Identities=20% Similarity=0.045 Sum_probs=20.3
Q ss_pred CcEEEEEcchh--HHHHHhhcccccee
Q psy6439 9 GKLLAVIGDED--TCVGFLLGGIGEIN 33 (114)
Q Consensus 9 ~~kIaVIGD~d--tv~GFrLaGi~~~~ 33 (114)
...+.++||.. -+.+++.+|+..+.
T Consensus 175 ~~~~~~iGD~~~nDi~~a~~aG~~~~~ 201 (235)
T 2om6_A 175 PEESLHIGDTYAEDYQGARKVGMWAVW 201 (235)
T ss_dssp GGGEEEEESCTTTTHHHHHHTTSEEEE
T ss_pred ccceEEECCChHHHHHHHHHCCCEEEE
Confidence 35688999976 49999999998754
No 115
>3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C*
Probab=22.53 E-value=1.4e+02 Score=19.92 Aligned_cols=21 Identities=14% Similarity=0.403 Sum_probs=12.4
Q ss_pred eEEEEEeh--HHHHHHHHHHhhc
Q psy6439 65 VDIILINQ--NVAELIRHCIDDH 85 (114)
Q Consensus 65 igII~ite--~~~~~i~d~i~~~ 85 (114)
+|||++|= ++++.+.+.++-+
T Consensus 3 igIvivSHg~~lA~gl~~~~~~i 25 (131)
T 3ct6_A 3 YGIVIVSHSPEIASGLKKLIREV 25 (131)
T ss_dssp EEEEEEESCHHHHHHHHHHHHTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHh
Confidence 46666664 5666666655554
No 116
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Probab=22.37 E-value=75 Score=23.36 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=35.7
Q ss_pred CcEEEEEcch--hH------HHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEe
Q psy6439 9 GKLLAVIGDE--DT------CVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILIN 71 (114)
Q Consensus 9 ~~kIaVIGD~--dt------v~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~it 71 (114)
.++.+|+|++ .+ -..|+..|++..|. ..+ .+++++.++++.+.. .++.=+.+|
T Consensus 11 ~~~~~viG~pi~hS~Sp~~h~~~~~~~gi~~~y~-------~~~--~~~~~l~~~i~~l~~-~~~~G~nVt 71 (287)
T 1nvt_A 11 TKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYV-------AFD--VLPENLKYVIDGAKA-LGIVGFNVT 71 (287)
T ss_dssp CEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEE-------EEE--CCGGGGGGHHHHHHH-HTCCEEEEC
T ss_pred ccEEEEECCCcccccCHHHHHHHHHHcCCCcEEE-------EEE--cCHHHHHHHHHHHHh-CCCCEEEEc
Confidence 4678999996 33 46899999998644 332 245888888887753 355445555
No 117
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=22.34 E-value=1e+02 Score=21.78 Aligned_cols=31 Identities=16% Similarity=0.438 Sum_probs=22.8
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCCeEEEEEehH
Q psy6439 41 LVVDKNTSVSDIEEAFRKFIKRDDVDIILINQN 73 (114)
Q Consensus 41 ~vv~~~~~~ee~~~~l~~l~~~~digII~ite~ 73 (114)
.++.+ +.++++++|++++++.++-+|++|-.
T Consensus 57 ~iv~D--d~~~I~~al~~a~~~~~~DlVIttGG 87 (189)
T 1jlj_A 57 KIVPD--EIEEIKETLIDWCDEKELNLILTTGG 87 (189)
T ss_dssp EEECS--CHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred EEeCC--CHHHHHHHHHHHhhcCCCCEEEEcCC
Confidence 34443 46899999999986556888988844
No 118
>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A
Probab=22.20 E-value=1.2e+02 Score=20.63 Aligned_cols=25 Identities=20% Similarity=0.016 Sum_probs=20.0
Q ss_pred cEEEEEcc-hhHHHHHhhccccceec
Q psy6439 10 KLLAVIGD-EDTCVGFLLGGIGEINK 34 (114)
Q Consensus 10 ~kIaVIGD-~dtv~GFrLaGi~~~~~ 34 (114)
..+.+||| ..-+.+++.+|+..+..
T Consensus 186 ~~~i~iGD~~~Di~~a~~aG~~~i~v 211 (259)
T 4eek_A 186 ERCVVIEDSVTGGAAGLAAGATLWGL 211 (259)
T ss_dssp GGEEEEESSHHHHHHHHHHTCEEEEE
T ss_pred HHEEEEcCCHHHHHHHHHCCCEEEEE
Confidence 56889999 55689999999997543
No 119
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=22.19 E-value=99 Score=19.89 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=19.3
Q ss_pred HHhhccccceeccCCCceeeecC--CCCHHHHHHHHHH
Q psy6439 23 GFLLGGIGEINKHRQPNFLVVDK--NTSVSDIEEAFRK 58 (114)
Q Consensus 23 GFrLaGi~~~~~~~~~nf~vv~~--~~~~ee~~~~l~~ 58 (114)
=|++-||++++... ||+.|+. +.+=++++..+..
T Consensus 45 LF~i~gVk~Vf~g~--dFITVtK~~~~dW~~ikp~I~~ 80 (94)
T 2k1h_A 45 LFEIEGVKSIFYVL--DFISIDKEDNANWNELLPQIEN 80 (94)
T ss_dssp HHTSTTEEEEEEET--TEEEEEECTTCCHHHHHHHHHH
T ss_pred hhCCCCeeEEEEeC--CEEEEecCCCCCHHHHHHHHHH
Confidence 46777888877754 3777744 2333444444333
No 120
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=22.16 E-value=2.1e+02 Score=20.09 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=46.7
Q ss_pred CCcEEEEEcchh-HHHHHhhccccceeccCCCc--eeeecCCCCHHHHHHHHHHhhcC-CCe-EEEEEehHHHHHHHHHH
Q psy6439 8 KGKLLAVIGDED-TCVGFLLGGIGEINKHRQPN--FLVVDKNTSVSDIEEAFRKFIKR-DDV-DIILINQNVAELIRHCI 82 (114)
Q Consensus 8 ~~~kIaVIGD~d-tv~GFrLaGi~~~~~~~~~n--f~vv~~~~~~ee~~~~l~~l~~~-~di-gII~ite~~~~~i~d~i 82 (114)
..++|++++.+. ...--|+.|+.......... ..++..+.+.++..+.+++++++ ++. ||+..++.++-.+-..+
T Consensus 125 G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al 204 (289)
T 3k9c_A 125 GHRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASATVVTGGTTETEGAEGMHTLLEMPTPPTAVVAFNDRCATGVLDLL 204 (289)
T ss_dssp TCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEECCCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCccEEECCCCHHHHHHHHHHHHcCCCCCCEEEECChHHHHHHHHHH
Confidence 346899998642 22222333333211111100 11333445668888889988864 343 55555666676666667
Q ss_pred hhcCCCcc---EEEEc
Q psy6439 83 DDHTQPIP---AVLEI 95 (114)
Q Consensus 83 ~~~~~~~P---~Iv~I 95 (114)
.+.....| .|+-.
T Consensus 205 ~~~g~~vP~di~vig~ 220 (289)
T 3k9c_A 205 VRSGRDVPADISVVGY 220 (289)
T ss_dssp HHTTCCTTTTCEEEEE
T ss_pred HHcCCCCCCceEEEEE
Confidence 77654444 45544
No 121
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=21.88 E-value=1.7e+02 Score=22.68 Aligned_cols=87 Identities=13% Similarity=0.044 Sum_probs=48.6
Q ss_pred CcEEEEEcchhHHHHHhh-----ccccceeccCCCceeeecCC-CCHHHHHHHHHHhhcCCCeEEEEEe---hHHHH-HH
Q psy6439 9 GKLLAVIGDEDTCVGFLL-----GGIGEINKHRQPNFLVVDKN-TSVSDIEEAFRKFIKRDDVDIILIN---QNVAE-LI 78 (114)
Q Consensus 9 ~~kIaVIGD~dtv~GFrL-----aGi~~~~~~~~~nf~vv~~~-~~~ee~~~~l~~l~~~~digII~it---e~~~~-~i 78 (114)
.-+||++.-+-++..-.+ .|+.-.. |+-+-.+ -..-.+.+.|+.+.++++.-+|++- +...+ ++
T Consensus 168 ~G~vgivSqSG~l~~~i~~~~~~~g~G~S~------~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~~e~~~ 241 (334)
T 3mwd_B 168 PGSVAYVSRSGGMSNELNNIISRTTDGVYE------GVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKI 241 (334)
T ss_dssp CCSEEEEESCHHHHHHHHHHHHHHSSCEEE------EEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHHHH
T ss_pred CCCEEEEeCchHHHHHHHHHHHhcCCCeEE------EEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCChHHHHH
Confidence 357999998887654332 3333211 1111110 0123455678888889998888875 22222 22
Q ss_pred HHHHhhcCCCccEEEEcCCCCCC
Q psy6439 79 RHCIDDHTQPIPAVLEIPSKDHP 101 (114)
Q Consensus 79 ~d~i~~~~~~~P~Iv~IP~~~g~ 101 (114)
-+.+.+....+|+|+.+.+++.+
T Consensus 242 ~~~~r~~~~~KPVV~~kaGrs~~ 264 (334)
T 3mwd_B 242 CRGIKEGRLTKPIVCWCIGTCAT 264 (334)
T ss_dssp HHHHHTTSCCSCEEEEEECTTCC
T ss_pred HHHHHhhcCCCCEEEEEcCCCcc
Confidence 22222234678999999988654
No 122
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=21.48 E-value=2.3e+02 Score=20.31 Aligned_cols=87 Identities=13% Similarity=0.065 Sum_probs=39.7
Q ss_pred cCCcEEEEEcch-hHHHHHhhccccceeccC-CCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhh
Q psy6439 7 VKGKLLAVIGDE-DTCVGFLLGGIGEINKHR-QPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDD 84 (114)
Q Consensus 7 ~~~~kIaVIGD~-dtv~GFrLaGi~~~~~~~-~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~ 84 (114)
++..+||++-.. +....--+.|++..-... +-++.+.+.+.+.+...+.++.++.+.==|||+...... .+.+.++.
T Consensus 4 ~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~-~~~~~~~~ 82 (325)
T 2x7x_A 4 TPHFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAA-PMTPIVEE 82 (325)
T ss_dssp --CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHH-HHHHHHHH
T ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHH-HHHHHHHH
Confidence 346789988532 111222233444321111 111233343344555566788887654446776654321 12222333
Q ss_pred cC-CCccEEEE
Q psy6439 85 HT-QPIPAVLE 94 (114)
Q Consensus 85 ~~-~~~P~Iv~ 94 (114)
+. ...|+|+.
T Consensus 83 ~~~~~iPvV~~ 93 (325)
T 2x7x_A 83 AYQKGIPVILV 93 (325)
T ss_dssp HHHTTCCEEEE
T ss_pred HHHCCCeEEEe
Confidence 32 56797764
No 123
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=21.46 E-value=1.2e+02 Score=21.36 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=19.5
Q ss_pred HHHHhhcCCCeEEEEEehHHHHHHHHHHhhcCCCccEEEE
Q psy6439 55 AFRKFIKRDDVDIILINQNVAELIRHCIDDHTQPIPAVLE 94 (114)
Q Consensus 55 ~l~~l~~~~digII~ite~~~~~i~d~i~~~~~~~P~Iv~ 94 (114)
.++.+..+.==|||+......+..-+.+.+ ...|+|+.
T Consensus 59 ~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~--~~iPvV~~ 96 (290)
T 2rgy_A 59 AVRFLIGRDCDGVVVISHDLHDEDLDELHR--MHPKMVFL 96 (290)
T ss_dssp HHHHHHHTTCSEEEECCSSSCHHHHHHHHH--HCSSEEEE
T ss_pred HHHHHHhcCccEEEEecCCCCHHHHHHHhh--cCCCEEEE
Confidence 677776554447777654322211122333 45787664
No 124
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=21.36 E-value=2.2e+02 Score=20.61 Aligned_cols=87 Identities=7% Similarity=0.149 Sum_probs=40.3
Q ss_pred cCCcEEEEEcc--hhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhh
Q psy6439 7 VKGKLLAVIGD--EDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDD 84 (114)
Q Consensus 7 ~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~ 84 (114)
++...|+++-. .+....--+.|++......+-+..+.+.+.+.+...+.++.+..+.==|||+......+...+.+.+
T Consensus 56 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~ 135 (340)
T 1qpz_A 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEE 135 (340)
T ss_dssp TCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHh
Confidence 35678998853 1212222334444321111111223333334555566777777554447777654322222333332
Q ss_pred cCCCccEEEE
Q psy6439 85 HTQPIPAVLE 94 (114)
Q Consensus 85 ~~~~~P~Iv~ 94 (114)
. ...|+|+.
T Consensus 136 ~-~~iPvV~~ 144 (340)
T 1qpz_A 136 Y-RHIPMVVM 144 (340)
T ss_dssp T-TTSCEEEE
T ss_pred h-CCCCEEEE
Confidence 1 45786654
No 125
>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0
Probab=21.11 E-value=1.1e+02 Score=20.82 Aligned_cols=25 Identities=12% Similarity=-0.053 Sum_probs=19.9
Q ss_pred cEEEEEcc-hhHHHHHhhccccceec
Q psy6439 10 KLLAVIGD-EDTCVGFLLGGIGEINK 34 (114)
Q Consensus 10 ~kIaVIGD-~dtv~GFrLaGi~~~~~ 34 (114)
..+.+||| ..-+.+.+.+|+..+..
T Consensus 187 ~~~i~vGD~~~Di~~a~~aG~~~v~v 212 (277)
T 3iru_A 187 NGCIKVDDTLPGIEEGLRAGMWTVGV 212 (277)
T ss_dssp GGEEEEESSHHHHHHHHHTTCEEEEE
T ss_pred ccEEEEcCCHHHHHHHHHCCCeEEEE
Confidence 56889999 66788999999986543
No 126
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=21.08 E-value=1.3e+02 Score=19.87 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=36.0
Q ss_pred EEEEEcchh-HHHHH-----hhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCC--CeEEEEEehH
Q psy6439 11 LLAVIGDED-TCVGF-----LLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRD--DVDIILINQN 73 (114)
Q Consensus 11 kIaVIGD~d-tv~GF-----rLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~--digII~ite~ 73 (114)
.|.+++=-. +..|+ +++|-+.+. .+-..++++.+++.+.+++++++- +=|++++++=
T Consensus 6 giiivsHG~~~A~~l~~~a~~i~G~~~~~------aid~~~~~~~~~~~~~i~~~i~~~d~~~GVLiL~Dm 70 (130)
T 3gx1_A 6 EVIVMMHGRSTATSMVETVQELLSIESGI------ALDMPLTVEVKAMYEKLKQTVVKLNPVKGVLILSDM 70 (130)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHTCCCCE------EEEECTTSCHHHHHHHHHHHHHTSCCTTCEEEEECS
T ss_pred EEEEEcCCHHHHHHHHHHHHHHcCccCEE------EEEecCCCCHHHHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 345555544 66666 355654322 233466778899999988888653 3489999864
No 127
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=20.81 E-value=2.3e+02 Score=19.96 Aligned_cols=88 Identities=10% Similarity=0.057 Sum_probs=46.2
Q ss_pred CCcEEEEEcchh--HHHHHhhccccceeccCC----CceeeecCCCCHHHHHHHHHHhhcC-CCe-EEEEEehHHHHHHH
Q psy6439 8 KGKLLAVIGDED--TCVGFLLGGIGEINKHRQ----PNFLVVDKNTSVSDIEEAFRKFIKR-DDV-DIILINQNVAELIR 79 (114)
Q Consensus 8 ~~~kIaVIGD~d--tv~GFrLaGi~~~~~~~~----~nf~vv~~~~~~ee~~~~l~~l~~~-~di-gII~ite~~~~~i~ 79 (114)
..++|++++.+. ...--|+.|+........ ..++. ..+.+.+...+.+++++++ +++ ||+..++.++-.+-
T Consensus 125 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~ 203 (294)
T 3qk7_A 125 GHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQ-KADPTRPGGYLAASRLLALEVPPTAIITDCNMLGDGVA 203 (294)
T ss_dssp TCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEE-EECSSHHHHHHHHHHHHHSSSCCSEEEESSHHHHHHHH
T ss_pred CCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHee-cCCCCHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHH
Confidence 356899997642 122233444332211111 11222 2234567788888888875 344 55555666676666
Q ss_pred HHHhhcCCCcc---EEEEcC
Q psy6439 80 HCIDDHTQPIP---AVLEIP 96 (114)
Q Consensus 80 d~i~~~~~~~P---~Iv~IP 96 (114)
..+.+.....| .|+-.=
T Consensus 204 ~al~~~G~~vP~di~vig~D 223 (294)
T 3qk7_A 204 SALDKAGLLGGEGISLIAYD 223 (294)
T ss_dssp HHHHHTTCSSTTSCEEEEET
T ss_pred HHHHHcCCCCCCceEEEeec
Confidence 66777654444 455443
No 128
>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A
Probab=20.76 E-value=85 Score=20.20 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=17.7
Q ss_pred CcEEEEEcc-hhHHHHHhhccccc
Q psy6439 9 GKLLAVIGD-EDTCVGFLLGGIGE 31 (114)
Q Consensus 9 ~~kIaVIGD-~dtv~GFrLaGi~~ 31 (114)
...+.++|| ..-+.+++.+|+..
T Consensus 150 ~~~~i~iGD~~~Di~~~~~ag~~v 173 (201)
T 4ap9_A 150 DGFILAMGDGYADAKMFERADMGI 173 (201)
T ss_dssp TSCEEEEECTTCCHHHHHHCSEEE
T ss_pred cCcEEEEeCCHHHHHHHHhCCceE
Confidence 345778899 55688999999964
No 129
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=20.74 E-value=1.2e+02 Score=21.42 Aligned_cols=86 Identities=12% Similarity=0.108 Sum_probs=36.8
Q ss_pred cCCcEEEEEcch--h--HHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHH
Q psy6439 7 VKGKLLAVIGDE--D--TCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCI 82 (114)
Q Consensus 7 ~~~~kIaVIGD~--d--tv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i 82 (114)
++...||++-.. + .-..-.+.|++......+-++.+.+.+.+.+...+.++.+..+.==|||+......+..-+.+
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l 85 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPNDPRVRFM 85 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTCHHHHHH
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCCcHHHHHH
Confidence 456788888652 1 233334556654322222122222222222332333333333333377776533222222223
Q ss_pred hhcCCCccEEEE
Q psy6439 83 DDHTQPIPAVLE 94 (114)
Q Consensus 83 ~~~~~~~P~Iv~ 94 (114)
.+ ...|+|+.
T Consensus 86 ~~--~~iPvV~i 95 (288)
T 3gv0_A 86 TE--RNMPFVTH 95 (288)
T ss_dssp HH--TTCCEEEE
T ss_pred hh--CCCCEEEE
Confidence 33 66897753
No 130
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=20.72 E-value=1.2e+02 Score=21.07 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=23.2
Q ss_pred eeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehH
Q psy6439 40 FLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQN 73 (114)
Q Consensus 40 f~vv~~~~~~ee~~~~l~~l~~~~digII~ite~ 73 (114)
+.++.+ +.++++++|++++++.++.+|++|-.
T Consensus 46 ~~iv~D--d~~~I~~~l~~~~~~~~~DlVittGG 77 (178)
T 2pbq_A 46 YRVIPD--ERDLIEKTLIELADEKGCSLILTTGG 77 (178)
T ss_dssp EEEECS--CHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred EEEcCC--CHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 345543 46899999999986446788988843
No 131
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0
Probab=20.70 E-value=1.1e+02 Score=20.16 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=19.9
Q ss_pred cEEEEEcc-hhHHHHHhhccccceec
Q psy6439 10 KLLAVIGD-EDTCVGFLLGGIGEINK 34 (114)
Q Consensus 10 ~kIaVIGD-~dtv~GFrLaGi~~~~~ 34 (114)
..+.++|| ..-+.+++.+|+..+..
T Consensus 160 ~~~i~iGD~~~Di~~a~~aG~~~i~v 185 (226)
T 3mc1_A 160 DDAIMIGDREYDVIGALKNNLPSIGV 185 (226)
T ss_dssp GGEEEEESSHHHHHHHHTTTCCEEEE
T ss_pred ccEEEECCCHHHHHHHHHCCCCEEEE
Confidence 46889999 66688899999987543
No 132
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=20.57 E-value=1.8e+02 Score=22.47 Aligned_cols=51 Identities=10% Similarity=0.187 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHhh-cCCCeEEEEEehHH--HHHHHHHHhhcCCCccEEEEcCCC
Q psy6439 47 TSVSDIEEAFRKFI-KRDDVDIILINQNV--AELIRHCIDDHTQPIPAVLEIPSK 98 (114)
Q Consensus 47 ~~~ee~~~~l~~l~-~~~digII~ite~~--~~~i~d~i~~~~~~~P~Iv~IP~~ 98 (114)
.+.+++.+.+++.+ +.++++||+++|.+ ++.+.+.|++.. ..-+-+.+|+.
T Consensus 196 ~~~~~i~~~i~~~~~~gk~~~iIvvaEG~~~~~~l~~~i~~~~-~~~~r~~~lGh 249 (319)
T 1zxx_A 196 YDVEEIANRLKQAQESGKDHGLVVVAEGVMTADQFMAELKKYG-DFDVRANVLGH 249 (319)
T ss_dssp CCHHHHHHHHHHHHHTTCCCEEEEEETTTCCHHHHHHHHHHSS-CCCEEEEECGG
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEEeCCcChHHHHHHHHHHhh-CceEEEecCCc
Confidence 45678888888877 45899999999986 566777776631 22345555654
No 133
>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}
Probab=20.52 E-value=92 Score=21.75 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=20.2
Q ss_pred cEEEEEcchh-H-HHHHhhccccceec
Q psy6439 10 KLLAVIGDED-T-CVGFLLGGIGEINK 34 (114)
Q Consensus 10 ~kIaVIGD~d-t-v~GFrLaGi~~~~~ 34 (114)
..+.+|||.- . +.+.+-+|+..+..
T Consensus 179 ~~~~~vGD~~~~Di~~a~~aG~~~i~~ 205 (263)
T 3k1z_A 179 VVAAHVGDNYLCDYQGPRAVGMHSFLV 205 (263)
T ss_dssp GGEEEEESCHHHHTHHHHTTTCEEEEE
T ss_pred HHEEEECCCcHHHHHHHHHCCCEEEEE
Confidence 5688999973 4 99999999998644
No 134
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=20.45 E-value=1.2e+02 Score=20.69 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=21.7
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCCeEEEEEehH
Q psy6439 41 LVVDKNTSVSDIEEAFRKFIKRDDVDIILINQN 73 (114)
Q Consensus 41 ~vv~~~~~~ee~~~~l~~l~~~~digII~ite~ 73 (114)
.++.+ +.++++++|++++++ ++-+|+.|-.
T Consensus 49 ~iv~D--d~~~I~~~l~~a~~~-~~DlVittGG 78 (167)
T 2g2c_A 49 VVVPE--GYDTVVEAIATALKQ-GARFIITAGG 78 (167)
T ss_dssp EEECS--SHHHHHHHHHHHHHT-TCSEEEEESC
T ss_pred EEeCC--CHHHHHHHHHHHHhC-CCCEEEECCC
Confidence 34443 468999999999864 3788888843
No 135
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=20.45 E-value=1.7e+02 Score=20.60 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhhcC-CCccEEEE
Q psy6439 45 KNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDDHT-QPIPAVLE 94 (114)
Q Consensus 45 ~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~~~-~~~P~Iv~ 94 (114)
.+.+.+.-.+.++.++.+.==|||+..... ....+.+..+. ...|+|+.
T Consensus 43 ~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~-~~~~~~~~~~~~~~iPvV~~ 92 (305)
T 3g1w_A 43 AQYDIQEQITVLEQAIAKNPAGIAISAIDP-VELTDTINKAVDAGIPIVLF 92 (305)
T ss_dssp SSSCHHHHHHHHHHHHHHCCSEEEECCSST-TTTHHHHHHHHHTTCCEEEE
T ss_pred CcCCHHHHHHHHHHHHHhCCCEEEEcCCCH-HHHHHHHHHHHHCCCcEEEE
Confidence 334556666778887765444666664321 11122233332 56887764
No 136
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.36 E-value=33 Score=20.59 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhcCCCeE
Q psy6439 50 SDIEEAFRKFIKRDDVD 66 (114)
Q Consensus 50 ee~~~~l~~l~~~~dig 66 (114)
+|++++|.+|+++.+|.
T Consensus 3 eEae~aF~~lL~~~~V~ 19 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVD 19 (59)
T ss_dssp THHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHcCCC
Confidence 78889999999888753
No 137
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=20.21 E-value=2e+02 Score=19.43 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=31.8
Q ss_pred HHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEeh---HHHHHHHHHHhhcC
Q psy6439 20 TCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQ---NVAELIRHCIDDHT 86 (114)
Q Consensus 20 tv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite---~~~~~i~d~i~~~~ 86 (114)
...-|+..|++.++.. .+.+.+++.++..+. +.-+|.++- ...+.+++.++.++
T Consensus 38 va~~l~~~G~eVi~lG---------~~~p~e~lv~aa~~~----~~diV~lS~~~~~~~~~~~~~i~~L~ 94 (161)
T 2yxb_A 38 VARALRDAGFEVVYTG---------LRQTPEQVAMAAVQE----DVDVIGVSILNGAHLHLMKRLMAKLR 94 (161)
T ss_dssp HHHHHHHTTCEEECCC---------SBCCHHHHHHHHHHT----TCSEEEEEESSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEECC---------CCCCHHHHHHHHHhc----CCCEEEEEeechhhHHHHHHHHHHHH
Confidence 3456788999986543 234668877766644 334444443 34555666666553
No 138
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=20.15 E-value=1.3e+02 Score=19.71 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=9.8
Q ss_pred cEEEEEcchhHH
Q psy6439 10 KLLAVIGDEDTC 21 (114)
Q Consensus 10 ~kIaVIGD~dtv 21 (114)
++|.++||+=|.
T Consensus 2 ~~i~~~GDSit~ 13 (190)
T 1ivn_A 2 DTLLILGDSLSA 13 (190)
T ss_dssp EEEEEEECHHHH
T ss_pred CcEEEEecCccc
Confidence 689999997664
No 139
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=20.01 E-value=2.1e+02 Score=23.26 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=30.1
Q ss_pred CCcEEEEEcchhHHHH----HhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcC
Q psy6439 8 KGKLLAVIGDEDTCVG----FLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKR 62 (114)
Q Consensus 8 ~~~kIaVIGD~dtv~G----FrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~ 62 (114)
..+|+++.||++.+.| ++=.|++.+.+ .. .. ..++.++.++++++.
T Consensus 359 ~Gkrv~i~gd~~~~~~la~~L~ElGm~vv~v-------~~-~~-~~~~~~~~~~~ll~~ 408 (519)
T 1qgu_B 359 HGKKFGLYGDPDFVMGLTRFLLELGCEPTVI-------LS-HN-ANKRWQKAMNKMLDA 408 (519)
T ss_dssp TTCEEEEESCHHHHHHHHHHHHHTTCEEEEE-------EE-TT-CCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCchHHHHHHHHHHHCCCEEEEE-------Ee-CC-CCHHHHHHHHHHHHh
Confidence 4689999999999998 33467776432 11 11 225556777777754
Done!