RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6439
(114 letters)
>d2d00a1 c.149.1.1 (A:6-109) V-type ATP synthase subunit F, AtpF
{Thermus thermophilus [TaxId: 274]}
Length = 104
Score = 81.3 bits (201), Expect = 4e-22
Identities = 14/107 (13%), Positives = 37/107 (34%), Gaps = 16/107 (14%)
Query: 12 LAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILIN 71
+AVI D +T GF L G+ +S + + ++R ++ ++
Sbjct: 1 MAVIADPETAQGFRLAGLEGYGA------------SSAEEAQSLLETLVERGGYALVAVD 48
Query: 72 QNVAELIRHCIDDHT--QPIPAVLEIPSKDHPYDAS--KDSILRRAK 114
+ + ++ + +P +L I + + + +
Sbjct: 49 EALLPDPERAVERLMRGRDLPVLLPIAGLKEAFQGHDVEGYMRELVR 95
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 76
Score = 66.2 bits (162), Expect = 2e-16
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 12 LAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILIN 71
LAV+GD D +GF+L GI +I + V +I +A +KRDDV ++++
Sbjct: 1 LAVVGDPDFTIGFMLAGISDI-------YEVTSDE----EIVKAVEDVLKRDDVGVVIMK 49
Query: 72 QNVAELIRHCIDD--HTQPIPAVLEI 95
Q + + + + P + +
Sbjct: 50 QEYLKKLPPVLRREIDEKVEPTFVSV 75
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis
protein RfaG {Escherichia coli [TaxId: 562]}
Length = 370
Score = 25.6 bits (54), Expect = 1.4
Identities = 5/44 (11%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 21 CVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDD 64
+ + G ++ + S + E RK + +
Sbjct: 296 VLTTAVCGYAHYIADANCGTVIAEPF-SQEQLNEVLRKALTQSP 338
>d1uxya2 d.146.1.1 (A:201-342) Uridine
diphospho-N-Acetylenolpyruvylglucosamine reductase,
MurB, C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 142
Score = 25.0 bits (54), Expect = 2.1
Identities = 7/50 (14%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 13 AVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKR 62
+ D+ G +GG + L+ + N D+ + ++
Sbjct: 66 GWLIDQCQLKGMQIGGAAVHRQQ--ALVLINEDNAKSEDVVQLAHHVRQK 113
>d1xkna_ d.126.1.6 (A:) Putative peptidyl-arginine deiminase
{Chlorobium tepidum [TaxId: 1097]}
Length = 353
Score = 25.1 bits (54), Expect = 2.3
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
Query: 52 IEEAF--RKFIKRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEI 95
+++ F R+ + D D+I + HC+ T PA+LE
Sbjct: 312 LQQCFPKREVVGIDCSDLIWGLGAI-----HCV---THEEPAMLEH 349
>d2q4oa1 c.129.1.1 (A:8-190) Hypothetical protein At2g37210/T2N18.3
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 183
Score = 24.7 bits (53), Expect = 2.5
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 57 RKFIKRDDVDIILINQNVAELIRH 80
FI +II+ EL++
Sbjct: 157 EGFISPTAREIIVSAPTAKELVKK 180
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 181
Score = 24.7 bits (53), Expect = 2.9
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 57 RKFIKRDDVDIILINQNVAELIRHCIDDHT 86
FIK +I++ EL+ ++++T
Sbjct: 153 EGFIKPGARNIVVSAPTAKELMEK-MEEYT 181
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294)
{Thermus thermophilus [TaxId: 274]}
Length = 171
Score = 24.4 bits (52), Expect = 3.2
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 55 AFRKFIKRDDVDIILINQNVAELIRH 80
I +DV ++ + + +L R
Sbjct: 142 KAHGEIAPEDVGLLRVVADEEDLRRF 167
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis
[TaxId: 1423]}
Length = 179
Score = 24.3 bits (52), Expect = 3.2
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 57 RKFIKRDDVDIILINQNVAELIRH 80
F + +I + ELI
Sbjct: 152 EGFSNESHLKLIHSSSRPDELIEQ 175
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644)
{Thermus thermophilus [TaxId: 274]}
Length = 208
Score = 24.7 bits (53), Expect = 3.3
Identities = 3/24 (12%), Positives = 12/24 (50%)
Query: 57 RKFIKRDDVDIILINQNVAELIRH 80
+K + +D+ + + E+++
Sbjct: 182 QKAVGPEDLQLFRLTDEPEEVVQA 205
>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 149
Score = 24.4 bits (53), Expect = 3.6
Identities = 7/52 (13%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 32 INKHRQPNFLVVDKNTSVSDIEEAFRKFIKRD---DVDIILINQNVAELIRH 80
KH+ + + T+ + ++ + IK+ + I++++ A +
Sbjct: 55 CAKHQ-VELIAIGNGTASRETDKLAGELIKKYPGMKLTKIMVSEAGASVYSA 105
>d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide
D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli
[TaxId: 562]}
Length = 135
Score = 24.0 bits (51), Expect = 4.8
Identities = 6/45 (13%), Positives = 15/45 (33%)
Query: 26 LGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILI 70
+ +G+ + V + + + + I V IL+
Sbjct: 75 VLSVGKQSHAISTASGVGEHFADKTALITRLKLLIAEQQVITILV 119
>d2bdra1 b.82.1.14 (A:1-166) Ureidoglycolate hydrolase AllA
{Pseudomonas putida [TaxId: 303]}
Length = 166
Score = 23.7 bits (51), Expect = 6.1
Identities = 9/39 (23%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 35 HRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQN 73
++ +FLVVD++ S ++ +E + F + ++++N +
Sbjct: 133 EKRDDFLVVDRSGSGNNCDEHY--F---TEEQMLILNPH 166
>d2ilka_ a.26.1.3 (A:) Interleukin-10 (cytokine synthesis
inhibitory factor, CSIF) {Human (Homo sapiens) [TaxId:
9606]}
Length = 155
Score = 23.6 bits (51), Expect = 6.5
Identities = 8/30 (26%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 51 DIEEAFRK----FIKRDDVDIILINQNVAE 76
D+ +AF + F +D +D +L+ +++ E
Sbjct: 20 DLRDAFSRVKTFFQMKDQLDNLLLKESLLE 49
>d1e9ya2 d.8.1.1 (A:1-105) Urease, gamma-subunit {Helicobacter
pylori [TaxId: 210]}
Length = 105
Score = 23.0 bits (50), Expect = 7.4
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 44 DKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRH 80
+ +++ + R +K DDV VA +I
Sbjct: 49 AGKKTAAELMQEGRTLLKPDDV-----MDGVASMIHE 80
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
{Escherichia coli [TaxId: 562]}
Length = 796
Score = 23.9 bits (51), Expect = 7.7
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 53 EEAFRKFIKRDDVDIILINQN-----VAELIRHCIDDHTQPIPAVLEIPSK 98
A RK + D ++I +N + EL+R ID+H I SK
Sbjct: 288 HLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSK 338
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.404
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 427,723
Number of extensions: 18579
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 42
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (21.8 bits)