BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6441
(464 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+SKG D+NA+ D +G T LH+AAK G K+IV L+ GAD +
Sbjct: 41 LHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 99
Query: 185 TSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
S TPL A K V++L+ G +NT+D
Sbjct: 100 DSDGRTPLHYAAKEGHKEIVKLLI--SKGADVNTSD 133
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G+ + V +L+ G D+NA D +G T LH+AAK G K+IV L+ GAD
Sbjct: 4 LGKRLIEAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHYAAKEGHKEIVKLLISKGAD 62
Query: 181 KSLLTSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
+ S TPL A K V++L+ G +N D
Sbjct: 63 VNAKDSDGRTPLHYAAKEGHKEIVKLLI--SKGADVNAKD 100
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+SKG D+NA+ D +G T LH+AAK G K+IV L+ GAD +
Sbjct: 74 LHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAAKEGHKEIVKLLISKGADVNTS 132
Query: 185 TSKEETPLALA 195
S TPL LA
Sbjct: 133 DSDGRTPLDLA 143
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 55.8 bits (133), Expect = 5e-08, Method: Composition-based stats.
Identities = 43/100 (43%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA D G T LH AAKRG +IV LLKHGAD
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 181 KSLLTSKEETPLALATK----PEVRILLGGEPGVTINTAD 216
+ S TPL LA V +LL E G +N D
Sbjct: 73 VNASDSWGRTPLHLAATVGHLEIVEVLL--EYGADVNAQD 110
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA+ D GWT LH AA G +IV LLK+GAD
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAR-DFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 181 KSLLTSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
+ S TPL LA + V +LL + G +N +D
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEIVEVLL--KNGADVNASD 110
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ G D+NA+ D G T LH AA+RG +IV LLK+GAD +
Sbjct: 51 LHLAAHFGHLEIVEVLLKNGADVNAK-DSLGVTPLHLAARRGHLEIVEVLLKNGADVNAS 109
Query: 185 TSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
S TPL LA K V +LL + G +N D
Sbjct: 110 DSHGFTPLHLAAKRGHLEIVEVLL--KNGADVNAQD 143
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G+ + V +L+ G D+NA D +G T LH AA+ G K++V LL GAD
Sbjct: 4 LGKRLIEAAENGNKDRVKDLLENGADVNAS-DSDGKTPLHLAAENGHKEVVKLLLSQGAD 62
Query: 181 KSLLTSKEETPLALAT----KPEVRILL--GGEPGVTINTADLPI 219
+ S +TPL LA K V++LL G +P + P+
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPL 107
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
G E V L+S+G D NA+ D +G T LH AA+ G K++V LL GAD + S +TP
Sbjct: 48 GHKEVVKLLLSQGADPNAK-DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTP 106
Query: 192 LALAT----KPEVRILLGGEPGVTINTAD 216
L LA K V++LL G NT+D
Sbjct: 107 LHLAAENGHKEVVKLLL--SQGADPNTSD 133
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
G E V L+S+G D NA+ D +G T LH AA+ G K++V LL GAD + S TP
Sbjct: 81 GHKEVVKLLLSQGADPNAK-DSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTP 139
Query: 192 LALA 195
L LA
Sbjct: 140 LDLA 143
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA+ D +GWT LH AA G +IV LLK+GAD
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 181 KSLLTSKEETPLALAT 196
+ + TPL LA
Sbjct: 73 VNAVDHAGMTPLRLAA 88
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
LR A+ G E V L+ G D+NA DM G T LH AA G +IV LLK+GAD
Sbjct: 84 LRLAALFGHLEIVEVLLKNGADVNAN-DMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ G D+NA D G T L AA G +IV LLK+GAD +
Sbjct: 51 LHLAAFNGHLEIVEVLLKNGADVNAV-DHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN 109
Query: 185 TSKEETPLALAT 196
+ TPL LA
Sbjct: 110 DMEGHTPLHLAA 121
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/100 (42%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA D G T LH AAKRG +IV LLKHGAD
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 181 KSLLTSKEETPLALATK----PEVRILLGGEPGVTINTAD 216
+ TPL LA V +LL E G +N D
Sbjct: 73 VNARDIWGRTPLHLAATVGHLEIVEVLL--EYGADVNAQD 110
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/100 (42%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA D G T LH AAKRG +IV LLKHGAD
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 181 KSLLTSKEETPLALATK----PEVRILLGGEPGVTINTAD 216
+ TPL LA V +LL E G +N D
Sbjct: 73 VNASDIWGRTPLHLAATVGHLEIVEVLL--EYGADVNAQD 110
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ G D+NA D+ G T LH AA G +IV LLKHGAD +
Sbjct: 51 LHLAASNGHLEIVEVLLKNGADVNAS-DLTGITPLHLAAATGHLEIVEVLLKHGADVNAY 109
Query: 185 TSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
+ TPL LA K V +LL + G +N D
Sbjct: 110 DNDGHTPLHLAAKYGHLEIVEVLL--KHGADVNAQD 143
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA D +G+T LH AA G +IV LLK+GAD
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAT-DNDGYTPLHLAASNGHLEIVEVLLKNGAD 72
Query: 181 KSLLTSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
+ TPL LA V +LL + G +N D
Sbjct: 73 VNASDLTGITPLHLAAATGHLEIVEVLL--KHGADVNAYD 110
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA+ D +G+T LH AA+ G +IV LLK GAD
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD 72
Query: 181 KSLLTSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
+ TPL LA + V +LL + G +N D
Sbjct: 73 VNAKDKDGYTPLHLAAREGHLEIVEVLL--KAGADVNAKD 110
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A+ G E V L+ G D+NA+ D +G+T LH AA+ G +IV LLK GAD +
Sbjct: 54 AAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 112
Query: 188 EETPLALATKPE----VRILLGGEPGVTINTAD 216
TPL LA + V +LL + G +N D
Sbjct: 113 GYTPLHLAAREGHLEIVEVLL--KAGADVNAQD 143
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA+ D +G+T LH AA+ G +IV LLK GAD
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 181 KSLLTSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
+ TPL LA + V +LL + G +N D
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLL--KAGADVNAKD 98
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A+ G E V L+ G D+NA+ D +G+T LH AA+ G +IV LLK GAD +
Sbjct: 42 AAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 100
Query: 188 EETPLALATKPE----VRILLGGEPGVTINTAD 216
TPL LA + V +LL + G +N D
Sbjct: 101 GYTPLHLAAREGHLEIVEVLL--KAGADVNAQD 131
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A+ G E V L+ G D+NA+ D +G+T LH AA+ G +IV LLK GAD +
Sbjct: 75 AAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 133
Query: 188 EETPLALA 195
+TP LA
Sbjct: 134 GKTPFDLA 141
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA+ D +G+T LH AA+ G +IV LLK GAD
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 181 KSLLTSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
+ TPL LA + V +LL + G +N D
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLL--KAGADVNAKD 98
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A+ G E V L+ G D+NA+ D +G+T LH AA+ G +IV LLK GAD +
Sbjct: 42 AAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 100
Query: 188 EETPLALATKPE----VRILLGGEPGVTINTAD 216
TPL LA + V +LL + G +N D
Sbjct: 101 GYTPLHLAAREGHLEIVEVLL--KAGADVNAQD 131
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A+ G E V L+ G D+NA+ D +G+T LH AA+ G +IV LLK GAD +
Sbjct: 75 AAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 133
Query: 188 EETPLALATK 197
+TP LA +
Sbjct: 134 GKTPFDLAIR 143
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA+ D +G T LH AA +G +IV LLKHGAD
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDD-SGKTPLHLAAIKGHLEIVEVLLKHGAD 72
Query: 181 KSLLTSKEETPLALAT 196
+ +TPL LA
Sbjct: 73 VNAADKMGDTPLHLAA 88
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L A+ G E V L+ G D+NA D G+T LH AA G +IV LLK+GAD
Sbjct: 84 LHLAALYGHLEIVEVLLKNGADVNAT-DTYGFTPLHLAADAGHLEIVEVLLKYGAD 138
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ G D+NA M G T LH AA G +IV LLK+GAD +
Sbjct: 51 LHLAAIKGHLEIVEVLLKHGADVNAADKM-GDTPLHLAALYGHLEIVEVLLKNGADVNAT 109
Query: 185 TSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
+ TPL LA V +LL + G +N D
Sbjct: 110 DTYGFTPLHLAADAGHLEIVEVLL--KYGADVNAQD 143
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA D NG T LH AA GQ +IV LLK+GAD
Sbjct: 6 LGKKLLEAAAAGQDDEVRILMANGADVNATDD-NGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 181 KSLLTSKEETPLALAT 196
+ S TPL LA
Sbjct: 65 VNASDSAGITPLHLAA 80
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L A+ G E V L+ G D+NA +D GWT LH AA GQ +IV LLKHGAD
Sbjct: 76 LHLAAYDGHLEIVEVLLKHGADVNA-YDRAGWTPLHLAALSGQLEIVEVLLKHGAD 130
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ G D+NA D G T LH AA G +IV LLKHGAD +
Sbjct: 43 LHLAAANGQLEIVEVLLKNGADVNAS-DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAY 101
Query: 185 TSKEETPLALAT 196
TPL LA
Sbjct: 102 DRAGWTPLHLAA 113
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 112 VSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIV 171
V+ DR + L A+ G E V L+ G D+NAQ D G TA + +GQ+D+
Sbjct: 98 VNAYDRAGW--TPLHLAALSGQLEIVEVLLKHGADVNAQ-DALGLTAFDISINQGQEDLA 154
Query: 172 SYL 174
L
Sbjct: 155 EIL 157
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 120 YLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
Y + L A+ +G E V L+ G D+NA D +G T LH AAKRG +IV LLK+GA
Sbjct: 46 YGDTPLHLAARVGHLEIVEVLLKNGADVNAL-DFSGSTPLHLAAKRGHLEIVEVLLKYGA 104
Query: 180 DKSLLTSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
D + + TPL LA V +LL + G +N D
Sbjct: 105 DVNADDTIGSTPLHLAADTGHLEIVEVLL--KYGADVNAQD 143
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA+ D G T LH AA+ G +IV LLK+GAD
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAE-DTYGDTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 181 KSLLTSKEETPLALATK 197
+ L TPL LA K
Sbjct: 73 VNALDFSGSTPLHLAAK 89
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
G E + L+ D+NA D +GWT LH AA RG +IV LLK+GAD + + + TP
Sbjct: 58 GHLEIIEVLLKYAADVNAS-DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTP 116
Query: 192 LALATKPE----VRILLGGEPGVTINTAD 216
L LA + V +LL + G +N D
Sbjct: 117 LHLAAEDGHLEIVEVLL--KYGADVNAQD 143
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA +D G T LH G +I+ LLK+ AD
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNA-NDWFGITPLHLVVNNGHLEIIEVLLKYAAD 72
Query: 181 KSLLTSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
+ TPL LA V +LL + G +N D
Sbjct: 73 VNASDKSGWTPLHLAAYRGHLEIVEVLL--KYGADVNAMD 110
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 133 DFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPL 192
D + V +L+ G ++N Q + GWT LH A + ++DIV LL+HGAD L TP
Sbjct: 37 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 96
Query: 193 ALAT-KPEVRIL-LGGEPGVTINTADL 217
LA V++L L G +N D
Sbjct: 97 ILAAIAGSVKLLKLFLSKGADVNECDF 123
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A+ G + + +SKG D+N + D G+TA AA G+ + +L K GA+ +L
Sbjct: 99 AAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT 157
Query: 188 EETPLALATKPEVRILLGGEPG 209
+E L ++ E G
Sbjct: 158 KEDQERLRKGGATALMDAAEKG 179
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 133 DFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPL 192
D + V +L+ G ++N Q + GWT LH A + ++DIV LL+HGAD L TP
Sbjct: 17 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 76
Query: 193 ALAT-KPEVRIL-LGGEPGVTINTADL 217
LA V++L L G +N D
Sbjct: 77 LLAAIAGSVKLLKLFLSKGADVNECDF 103
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A+ G + + +SKG D+N + D G+TA AA G+ + +L K GA+ +L
Sbjct: 79 AAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT 137
Query: 188 EETPLALATKPEVRILLGGEPG 209
+E L ++ E G
Sbjct: 138 KEDQERLRKGGATALMDAAEKG 159
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+SKG D NA+ D +G T LH+AA+ G K+IV LL GAD +
Sbjct: 41 LHYAAENGHKEIVKLLLSKGADPNAK-DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 99
Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
S TPL A K V++LL G NT+D
Sbjct: 100 DSDGRTPLHYAAENGHKEIVKLLL--SKGADPNTSD 133
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 7/105 (6%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G+ + V +L+ G D NA D +G T LH+AA+ G K+IV LL GAD
Sbjct: 4 LGKRLIEAAENGNKDRVKDLLENGADPNAS-DSDGRTPLHYAAENGHKEIVKLLLSKGAD 62
Query: 181 KSLLTSKEETPLALAT----KPEVRILL--GGEPGVTINTADLPI 219
+ S TPL A K V++LL G +P + P+
Sbjct: 63 PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPL 107
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+SKG D NA+ D +G T LH+AA+ G K+IV LL GAD +
Sbjct: 74 LHYAAENGHKEIVKLLLSKGADPNAK-DSDGRTPLHYAAENGHKEIVKLLLSKGADPNTS 132
Query: 185 TSKEETPLALA 195
S TPL LA
Sbjct: 133 DSDGRTPLDLA 143
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA D+ GWT LH AA G +IV LLK+GAD
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAA-DVVGWTPLHLAAYWGHLEIVEVLLKNGAD 72
Query: 181 KSLLTSKEETPLALAT 196
+ + TPL LA
Sbjct: 73 VNAYDTLGSTPLHLAA 88
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L A+ G E V L+ G D+NA+ D NG T LH AA RG +IV LLK+GAD
Sbjct: 84 LHLAAHFGHLEIVEVLLKNGADVNAKDD-NGITPLHLAANRGHLEIVEVLLKYGAD 138
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ G D+NA +D G T LH AA G +IV LLK+GAD +
Sbjct: 51 LHLAAYWGHLEIVEVLLKNGADVNA-YDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAK 109
Query: 185 TSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
TPL LA V +LL + G +N D
Sbjct: 110 DDNGITPLHLAANRGHLEIVEVLL--KYGADVNAQD 143
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ +G E V L+ G D+NA+ D +GWT LH AA G +IV LLK+GAD +
Sbjct: 51 LHLAAWIGHPEIVEVLLKHGADVNAR-DTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQ 109
Query: 185 TSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
+ TPL LA V +LL + G +N D
Sbjct: 110 DAYGLTPLHLAADRGHLEIVEVLL--KHGADVNAQD 143
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA HD G T LH AA G +IV LLKHGAD
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNA-HDDQGSTPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 181 KSLLTSKEETPLALAT 196
+ + TPL LA
Sbjct: 73 VNARDTDGWTPLHLAA 88
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L AS G V LVS G D+NAQ NG TALH A D+VS LLK GAD + +
Sbjct: 118 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV 177
Query: 185 TSKEETPLALA-TKPEVRI 202
T + +P L +P RI
Sbjct: 178 TYQGYSPYQLTWGRPSTRI 196
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 33 YSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQE------IELVLSQMPD 86
Y+ L+I K+ ++ +++L+ N + V L + + + L+LS+ +
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQYGGSANA--ESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270
Query: 87 GHGSIVNGMENTHL--NSARLPFS------VLGVSDMDRVKYLEEQLREASCLGDFEAVC 138
G+ +G+ HL +P + + V R+ Y L AS G+ + V
Sbjct: 271 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY--TPLHVASHYGNIKLVK 328
Query: 139 ELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
L+ D+NA+ + G++ LH AA++G DIV+ LLK+GA + ++S TPLA+A +
Sbjct: 329 FLLQHQADVNAKTKL-GYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR 386
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
NG+T LH AAK+ Q ++ LL++G + + + TPL LA +
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ 254
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
+E L A+ G E L+ +NA+ + T LH AA+ G ++V LL++ A+
Sbjct: 47 VETPLHMAARAGHTEVAKYLLQNKAKVNAK-AKDDQTPLHCAARIGHTNMVKLLLENNAN 105
Query: 181 KSLLTSKEETPLALATK 197
+L T+ TPL +A +
Sbjct: 106 PNLATTAGHTPLHIAAR 122
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 155 GWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK-PEVRI 202
G T LH AA+ G + V LL+ A ++ +T K TPL +A K +VR+
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRV 161
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 157 TALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
T LH A+ G IV LL+ GA ++ K ETPL +A +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAAR 56
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ K A G+T LH AAK G+ + LL+ A +
Sbjct: 117 LHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA 175
Query: 185 TSKEETPLALATKPE----VRILL--GGEP 208
TPL +A V++LL GG P
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L AS G V LVS G D+NAQ NG TALH A D+VS LLK GAD + +
Sbjct: 121 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV 180
Query: 185 TSKEETPLALA-TKPEVRI 202
T + +P L +P RI
Sbjct: 181 TYQGYSPYQLTWGRPSTRI 199
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+SKG D+NA+ D +G T LH AA+ G K++V L+ GAD +
Sbjct: 74 LHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHKEVVKLLISKGADVNTS 132
Query: 185 TSKEETPLALA 195
S TPL LA
Sbjct: 133 DSDGRTPLDLA 143
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G+ + V +L+ G D+NA D +G T LH AA+ G K++V L+ GAD
Sbjct: 4 LGKRLIEAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKGAD 62
Query: 181 KSLLTSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
+ S TPL A K V++L+ G +N D
Sbjct: 63 VNAKDSDGRTPLHHAAENGHKEVVKLLI--SKGADVNAKD 100
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA D +G T LH AA G +IV LLKHGAD
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 181 KSLLTSKEETPLALAT 196
+ + TPL LA
Sbjct: 73 VNAIDIXGSTPLHLAA 88
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ G D+NA D+ G T LH AA G +IV LLKHGAD + +
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAI-DIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV 109
Query: 185 TSKEETPLALAT 196
+ +TPL LA
Sbjct: 110 DTWGDTPLHLAA 121
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 63 RKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLGV-----SDMDR 117
+K + AR E+ ++++ D + + +G+ HL + ++ V +D++
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNA 75
Query: 118 VKYLEEQ-LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLK 176
+ L A+ +G E V L+ G D+NA D G T LH AA G +IV LLK
Sbjct: 76 IDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV-DTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 177 HGAD 180
HGAD
Sbjct: 135 HGAD 138
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA D +G T LH AA G +IV LLKHGAD
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 181 KSLLTSKEETPLALAT 196
+ + TPL LA
Sbjct: 73 VNAIDIMGSTPLHLAA 88
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ G D+NA D+ G T LH AA G +IV LLKHGAD + +
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAI-DIMGSTPLHLAALIGHLEIVEVLLKHGADVNAV 109
Query: 185 TSKEETPLALAT 196
+ +TPL LA
Sbjct: 110 DTWGDTPLHLAA 121
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 63 RKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLGV-----SDMDR 117
+K + AR E+ ++++ D + + +G+ HL + ++ V +D++
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNA 75
Query: 118 VKYLEEQ-LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLK 176
+ + L A+ +G E V L+ G D+NA D G T LH AA G +IV LLK
Sbjct: 76 IDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAV-DTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 177 HGAD 180
HGAD
Sbjct: 135 HGAD 138
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA D GWT LH AA G +IV LLK+GAD
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAS-DHVGWTPLHLAAYFGHLEIVEVLLKNGAD 72
Query: 181 KSLLTSKEETPLALAT 196
+ S TPL LA
Sbjct: 73 VNADDSLGVTPLHLAA 88
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L A+ G E V L+ G D+NA D NG+T LH AA G +IV LLKHGAD
Sbjct: 84 LHLAADRGHLEVVEVLLKNGADVNAN-DHNGFTPLHLAANIGHLEIVEVLLKHGAD 138
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ G D+NA D G T LH AA RG ++V LLK+GAD +
Sbjct: 51 LHLAAYFGHLEIVEVLLKNGADVNAD-DSLGVTPLHLAADRGHLEVVEVLLKNGADVNAN 109
Query: 185 TSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
TPL LA V +LL + G +N D
Sbjct: 110 DHNGFTPLHLAANIGHLEIVEVLL--KHGADVNAQD 143
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
G E V L+ G D+NA+ D NG T LH AA+ G ++V LL+ GAD + TP
Sbjct: 13 GHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 71
Query: 192 LALATK----PEVRILLGGEPGVTINTAD 216
L LA + V++LL E G +N D
Sbjct: 72 LHLAARNGHLEVVKLLL--EAGADVNAKD 98
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
G E V L+ G D+NA+ D NG T LH AA+ G ++V LL+ GAD + TP
Sbjct: 46 GHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104
Query: 192 LALATK 197
L LA +
Sbjct: 105 LHLAAR 110
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
G E V L+ G D+NA+ D NG T LH AA+ G ++V LL+ GA
Sbjct: 79 GHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK----PEVRILLGGEPG 209
NG T LH AA+ G ++V LL+ GAD + TPL LA + V++LL E G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL--EAG 58
Query: 210 VTINTAD 216
+N D
Sbjct: 59 ADVNAKD 65
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 120 YLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
Y L A+ +G E V L+ G D+NA D NG T LH AA G +IV LLK+GA
Sbjct: 34 YGRTPLHMAAAVGHLEIVEVLLRNGADVNAV-DTNGTTPLHLAASLGHLEIVEVLLKYGA 92
Query: 180 DKSLLTSKEETPLALA 195
D + + TPL LA
Sbjct: 93 DVNAKDATGITPLYLA 108
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 8/109 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D NA +D G T LH AA G +IV LL++GAD
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADANA-YDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 181 KSLLTSKEETPLALATK----PEVRILLGGEPGVTINTADLP-IVPNYI 224
+ + + TPL LA V +LL + G +N D I P Y+
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLL--KYGADVNAKDATGITPLYL 107
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L A+ LG E V L+ G D+NA+ D G T L+ AA G +IV LLKHGAD
Sbjct: 72 LHLAASLGHLEIVEVLLKYGADVNAK-DATGITPLYLAAYWGHLEIVEVLLKHGAD 126
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA D G T LH AA G +IV LLKHGAD
Sbjct: 14 LGKKLLEAARAGQDDEVRILIANGADVNAV-DNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 181 KSLLTSKEETPLALATKPE----VRILLGGEPGVTINTADL 217
TPL LA V +LL + G +N D+
Sbjct: 73 VDAADVYGFTPLHLAAMTGHLEIVEVLL--KYGADVNAFDM 111
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ G D++A D+ G+T LH AA G +IV LLK+GAD +
Sbjct: 51 LHLAAVSGHLEIVEVLLKHGADVDAA-DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAF 109
Query: 185 TSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
TPL LA V +LL + G +N D
Sbjct: 110 DMTGSTPLHLAADEGHLEIVEVLL--KYGADVNAQD 143
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ G D++A D+ G+T LH AA G +IV LLK+GAD + +
Sbjct: 51 LHLAAYSGHLEIVEVLLKHGADVDAS-DVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAM 109
Query: 185 TSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
S TPL LA K V +LL + G +N D
Sbjct: 110 DSDGMTPLHLAAKWGYLEIVEVLL--KHGADVNAQD 143
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L +L EA+ G + V L++ G D+NA D G T LH AA G +IV LLKHGAD
Sbjct: 14 LGRKLLEAARAGQDDEVRILMANGADVNAA-DNTGTTPLHLAAYSGHLEIVEVLLKHGAD 72
Query: 181 KSLLTSKEETPLALAT 196
TPL LA
Sbjct: 73 VDASDVFGYTPLHLAA 88
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V +L+SKG D+NA+ +G T LH AAK G +IV LL GAD +
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSK-DGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71
Query: 185 TSKEETPLALATK 197
+ TP LA K
Sbjct: 72 SKDGNTPEHLAKK 84
Score = 35.0 bits (79), Expect = 0.085, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 86 DGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGI 145
DG+ + N +N H + S G R K L A+ G E V L++KG
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 146 DINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
D+NA+ +G T H A K G +IV L GAD
Sbjct: 67 DVNARSK-DGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 24/44 (54%)
Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
+G T LH AAK G + V LL GAD + + TPL LA K
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAK 51
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA D G T LH AAK G +IV LLK+GAD
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAT-DWLGHTPLHLAAKTGHLEIVEVLLKYGAD 72
Query: 181 KSLLTSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
+ + TPL LA V +LL + G +N D
Sbjct: 73 VNAWDNYGATPLHLAADNGHLEIVEVLL--KHGADVNAKD 110
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ G D+NA D G T LH AA G +IV LLKHGAD +
Sbjct: 51 LHLAAKTGHLEIVEVLLKYGADVNAW-DNYGATPLHLAADNGHLEIVEVLLKHGADVNAK 109
Query: 185 TSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
+ TPL LA V +LL + G +N D
Sbjct: 110 DYEGFTPLHLAAYDGHLEIVEVLL--KYGADVNAQD 143
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 137 VCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT 196
V +L++ DINA D +G TALHWAA + V+ LL H A++ K+ETPL LA
Sbjct: 134 VEDLITADADINAA-DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAA 192
Query: 197 K 197
+
Sbjct: 193 R 193
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 135 EAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLAL 194
+ + +L+++G ++NA D G T+LH AA+ + D LL GAD + + TPL
Sbjct: 31 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 90
Query: 195 ATKPEV 200
A +
Sbjct: 91 AVAADA 96
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
G E V L+ G D+NA+ D NG T LH AA+ G ++V LL+ GAD + TP
Sbjct: 13 GHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 71
Query: 192 LALATK 197
L LA +
Sbjct: 72 LHLAAR 77
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
G E V L+ G D+NA+ D NG T LH AA+ G ++V LL+ GA
Sbjct: 46 GHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK----PEVRILLGGEPG 209
NG T LH AA+ G ++V LL+ GAD + TPL LA + V++LL E G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL--EAG 58
Query: 210 VTINTAD 216
+N D
Sbjct: 59 ADVNAKD 65
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPE----VRILLGGE 207
D G+T L WAA GQ +V +LL++GAD LL E+ L+LA V++LL +
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL--D 106
Query: 208 PGVTINTAD 216
GV +N D
Sbjct: 107 CGVDVNEYD 115
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 122 EEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
E L A G + V L+ G+D+N ++D NG T L +A V LL+ GAD
Sbjct: 86 ESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 144
Query: 182 SLLTSKEETPLALATKPEVR 201
++ T + LA R
Sbjct: 145 TIETDSGYNSMDLAVALGYR 164
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L + G D+NA +D G T LH AA G +IV LLK+GAD
Sbjct: 14 LGKKLLEAARAGQDDEVRILTANGADVNA-NDYWGHTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 181 KSLLTSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
+ + TPL LA + V +LL + G +N D
Sbjct: 73 VNATGNTGRTPLHLAAWADHLEIVEVLL--KHGADVNAQD 110
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPE----VRILLGGE 207
D G+T L WAA GQ +V +LL++GAD LL E+ L+LA V++LL +
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL--D 88
Query: 208 PGVTINTAD 216
GV +N D
Sbjct: 89 CGVDVNEYD 97
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 122 EEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
E L A G + V L+ G+D+N ++D NG T L +A V LL+ GAD
Sbjct: 68 ESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 126
Query: 182 SLLTSKEETPLALATKPEVR 201
++ T + LA R
Sbjct: 127 TIETDSGYNSMDLAVALGYR 146
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPE----VRILLGGE 207
D G+T L WAA GQ +V +LL++GAD LL E+ L+LA V++LL +
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL--D 90
Query: 208 PGVTINTAD 216
GV +N D
Sbjct: 91 CGVDVNEYD 99
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 122 EEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
E L A G + V L+ G+D+N ++D NG T L +A V LL+ GAD
Sbjct: 70 ESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 128
Query: 182 SLLTSKEETPLALATKPEVR 201
++ T + LA R
Sbjct: 129 TIETDSGYNSMDLAVALGYR 148
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA+ D +G+T LH AA+ G +IV LLK GAD
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L A+ LG E V L+ G D+NA+ D G T LH AA RG +IV LLKHGAD
Sbjct: 51 LHLAAQLGHLEIVEVLLKYGADVNAE-DNFGITPLHLAAIRGHLEIVEVLLKHGAD 105
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA D +G T LH AA+ G +IV LLK+GAD
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAL-DEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 181 KSLLTSKEETPLALA 195
+ + TPL LA
Sbjct: 73 VNAEDNFGITPLHLA 87
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 162 AAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
AA+ GQ D V L+ +GAD + L TPL LA +
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQ 56
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA +D G T LH AA +IV LLKHGAD
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNA-NDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 181 KSLLTSKEETPLALA 195
+ + TPL LA
Sbjct: 73 VNAHDNDGSTPLHLA 87
Score = 41.6 bits (96), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 134 FEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
E V L+ G D+NA HD +G T LH AA G +IV LLKHGAD
Sbjct: 60 LEIVEVLLKHGADVNA-HDNDGSTPLHLAALFGHLEIVEVLLKHGAD 105
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA+ D G T LH AA +IV LLK+GAD
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 181 KSLLTSKEETPLAL 194
+ + + ETPL L
Sbjct: 73 VNAIDAIGETPLHL 86
Score = 35.8 bits (81), Expect = 0.048, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 134 FEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
E V L+ G D+NA D G T LH A G +IV LLKHGAD
Sbjct: 60 LEIVEVLLKNGADVNAI-DAIGETPLHLVAMYGHLEIVEVLLKHGAD 105
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 139 ELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
+L++ D+NA D+ G +ALHWAA D LLK+GA+K + +KEETPL LA +
Sbjct: 33 DLINSHADVNAVDDL-GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAR 90
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 139 ELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
+L++ D+NA D+ G +ALHWAA D LLK+GA+K + +KEETPL LA +
Sbjct: 107 DLINSHADVNAVDDL-GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAR 164
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 137 VCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT 196
+ + + +G ++ Q D G TALH AA+ + D LL+ AD + + TPL A
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAV 63
Query: 197 KPEVR 201
+ +
Sbjct: 64 SADAQ 68
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 139 ELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
+L++ D+NA D+ G +ALHWAA D LLK+GA+K + ++EETPL LA +
Sbjct: 143 DLINSHADVNAVDDL-GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 200
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 137 VCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT 196
+ + + +G ++ Q D G TALH AA+ + D LL+ AD ++ + TPL A
Sbjct: 40 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 99
Query: 197 KPEVR 201
+ +
Sbjct: 100 SADAQ 104
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 139 ELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
+L++ D+NA D+ G +ALHWAA D LLK+GA+K + ++EETPL LA +
Sbjct: 142 DLINSHADVNAVDDL-GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 137 VCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT 196
+ + + +G ++ Q D G TALH AA+ + D LL+ AD ++ + TPL A
Sbjct: 39 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Query: 197 KPEVR 201
+ +
Sbjct: 99 SADAQ 103
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 139 ELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
+L++ D+NA D+ G +ALHWAA D LLK+GA+K + ++EETPL LA +
Sbjct: 110 DLINSHADVNAVDDL-GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 167
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 132 GDFEAV-CELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEET 190
GD AV + + +G ++ Q D G TALH AA+ + D LL+ AD ++ + T
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 191 PLALATKPEVR 201
PL A + +
Sbjct: 61 PLHAAVSADAQ 71
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A G +E L+ G +NA D+ +T LH AA + + ++ S LL HGAD +L+
Sbjct: 95 LHNACSYGHYEVTELLLKHGACVNAM-DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV 153
Query: 185 TSKEETPLALATKPEVR 201
++ + +A PE+R
Sbjct: 154 NCHGKSAVDMAPTPELR 170
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPL---ALAT 196
L+ KG ++N + + + T LH AA+R D++ L KHGA + L S +T L ALA
Sbjct: 233 LLRKGANVN-EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG 291
Query: 197 KPEV-RILL--GGEPGV 210
+ R+LL G +P +
Sbjct: 292 HLQTCRLLLSYGSDPSI 308
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPL 192
L+ G D++A+ D G LH A G ++ LLKHGA + + + TPL
Sbjct: 77 LLQHGADVHAK-DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPL 128
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 119 KYLEEQLREASCLGDFEAVCELVSKGIDINAQ-HDMNGWTALHWAAKRGQKDIVSYLLKH 177
+Y +++L EA+ G+ E + L++ +++N D T LH AA + IV LL+H
Sbjct: 22 EYKKDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH 80
Query: 178 GAD 180
GAD
Sbjct: 81 GAD 83
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 137 VCELVSK-GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
V E++ K G +NA D G TALH AA G LL +G+D S+++ + T +
Sbjct: 262 VMEVLHKHGAKMNAL-DSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320
Query: 196 TKPEVRILLGGEP 208
+ +IL P
Sbjct: 321 NEAVQQILSESTP 333
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 139 ELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
+L++ D+NA D+ G +ALHWAA D LLK+GA+K + ++EETPL LA +
Sbjct: 142 DLINSHADVNAVDDL-GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 137 VCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT 196
+ + + +G ++ Q D G TALH AA + D LL+ AD ++ + TPL A
Sbjct: 39 ISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Query: 197 KPEVR 201
+ +
Sbjct: 99 SADAQ 103
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 111 GVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDI 170
GVS R K L A+ G V L+ G D+NA+ DM TALHWA + +++
Sbjct: 57 GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEV 115
Query: 171 VSYLLKHGAD 180
V L+K+GAD
Sbjct: 116 VELLIKYGAD 125
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G F L+ G+ +A+ ++ T LH AA G +IV LLKHGAD +
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVDR-TPLHMAASEGHANIVEVLLKHGADVNAK 96
Query: 185 TSKEETPLALATK 197
+ T L AT+
Sbjct: 97 DMLKMTALHWATE 109
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D G + LH AA+ G LL+ G
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 181 KSLLTSKEETPLALATKPE----VRILLGGEPGVTINTADL 217
+ T + TPL +A V +LL + G +N D+
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLL--KHGADVNAKDM 98
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+NA+ D G T L+ A G +IV LLK+GAD
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 181 KSLLTSKEETPLALA 195
+ + + TPL LA
Sbjct: 73 VNAVDAIGFTPLHLA 87
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
A+ G E V L+ G D+NA D G+T LH AA G +I LLKHGAD
Sbjct: 54 ATAHGHLEIVEVLLKNGADVNAV-DAIGFTPLHLAAFIGHLEIAEVLLKHGAD 105
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 43/72 (59%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
+ + + G+ + + E + KG ++ + D G+T L WA+ G+ + V +LL+ GAD +L
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 185 TSKEETPLALAT 196
+ E+ L+LA+
Sbjct: 66 AKERESALSLAS 77
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 118 VKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
K E L AS G + V L+ + +DIN +D NG T L +A + V LL
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINI-YDWNGGTPLLYAVRGNHVKCVEALLAR 124
Query: 178 GADKSLLTSKEETPLALATKPEVR 201
GAD + TP+ LA R
Sbjct: 125 GADLTTEADSGYTPMDLAVALGYR 148
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 43/72 (59%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
+ + + G+ + + E + KG ++ + D G+T L WA+ G+ + V +LL+ GAD +L
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 185 TSKEETPLALAT 196
+ E+ L+LA+
Sbjct: 66 AKERESALSLAS 77
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 118 VKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
K E L AS G + V L+ + +DIN +D NG T L +A V LL
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINI-YDWNGGTPLLYAVHGNHVKCVEALLAR 124
Query: 178 GADKSLLTSKEETPLALATKPEVR 201
GAD + TP+ LA R
Sbjct: 125 GADLTTEADSGYTPMDLAVALGYR 148
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPE 199
L+ G ++NAQ +G +ALH A+ RG +V L++ GAD SL +TPL +A
Sbjct: 169 LLQHGANVNAQM-YSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR 227
Query: 200 VRILLGGE 207
V +L G+
Sbjct: 228 VIDILRGK 235
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 129 SCLGD-FEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
+C+ D + V LV G +IN Q D GW LH AA G DI YL+ GA + S+
Sbjct: 80 ACIDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSE 138
Query: 188 EETPL 192
+TPL
Sbjct: 139 GDTPL 143
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 128 ASCL-GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTS 186
A+C GD E V L+ +G DIN +++G TALH A D+V +L+++GA+ + +
Sbjct: 46 AACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104
Query: 187 KEETPLALATK------PEVRILLGGEPGVTINTADLPI 219
+ PL A E I G G + D P+
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 96 ENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNG 155
E L AR + ++D+ K L A+ G E + L+ D+N + D +G
Sbjct: 174 ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK-DYDG 232
Query: 156 WTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
WT LH AA G+++ L+++ D + +T +A
Sbjct: 233 WTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 122 EEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
E L AS GD +V L+ G D N + D GWT LH A G +V LL+H A
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 182 SLLTSKEETPLALATK 197
+ + ++PL A K
Sbjct: 70 NTTGYQNDSPLHDAAK 85
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 144 GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPL 192
GID H G T LH A+ +G V YLL++G+D ++ TPL
Sbjct: 1 GIDPFTNH--RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPL 47
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+ A+ D NG T LH AA+ G ++V LL+ GAD
Sbjct: 24 LGKKLLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Score = 28.9 bits (63), Expect = 5.8, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 162 AAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK----PEVRILLGGEPGVTINTAD 216
AA+ GQ D V L+ +GAD + TPL LA + V++LL E G + D
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL--EAGADVXAQD 87
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
Query: 139 ELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKP 198
+L+SKG ++N + D +G T L W+ G ++ +LL+HGA+ + + ETPL +A+K
Sbjct: 86 KLLSKGSNVNTK-DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY 144
Query: 199 E----VRILLGGEPGVTINTADL 217
V+ LL E G I+ DL
Sbjct: 145 GRSEIVKKLL--ELGADISARDL 165
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 129 SCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKE 188
+C+ E + + + D D+ G TAL WA K + I LL G++ +
Sbjct: 42 ACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSG 101
Query: 189 ETPL 192
+TPL
Sbjct: 102 KTPL 105
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L ++L EA+ G + V L++ G D+ A+ D NG T LH AA+ G ++V LL+ GAD
Sbjct: 6 LGKKLLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 162 AAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK----PEVRILLGGEPGVTINTAD 216
AA+ GQ D V L+ +GAD + TPL LA + V++LL E G +N D
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL--EAGADVNAQD 69
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
GD + V + V+KG D+N + G LH+AA GQ +I+ +LL GAD + TP
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLE-GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITP 76
Query: 192 LALA 195
L A
Sbjct: 77 LLSA 80
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 132 GDFEAVCELVSKG-IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEET 190
G +E V L+S G +D+N Q D GWT + WA + D+V LL G+D ++ ++E
Sbjct: 88 GHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENI 146
Query: 191 PLALAT 196
L A
Sbjct: 147 CLHWAA 152
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA-DKSL 183
L EA+ EAV L+ G ++ + D G T LH AAK+G ++V YLL +G D +
Sbjct: 48 LMEAAENNHLEAVKYLIKAGALVDPK-DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC 106
Query: 184 LTSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
TP+ AT+ + V++LL G IN D
Sbjct: 107 QDDGGWTPMIWATEYKHVDLVKLLLS--KGSDINIRD 141
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
L+SKG DIN + + LHWAA G DI LL D + ++PL +A +
Sbjct: 130 LLSKGSDINIRDNEEN-ICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAR 186
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A G +E LV G +N D+ +T LH AA +G+ +I LL+HGAD +
Sbjct: 79 LHNACSYGHYEVAELLVKHGAVVNVA-DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 137
Query: 185 TSKEETPLALATKPEVRI 202
TPL L + I
Sbjct: 138 NRDGNTPLDLVKDGDTDI 155
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 67/155 (43%), Gaps = 22/155 (14%)
Query: 108 SVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGW--TALHWAAKR 165
+G S+ DR QL EA+ GD E V +L + +N + D+ G T LH+AA
Sbjct: 1 GAMGNSEADR------QLLEAAKAGDVETVKKLCTV-QSVNCR-DIEGRQSTPLHFAAGY 52
Query: 166 GQKDIVSYLLKHGADKSLLTSKEETPLALATK---PEVRILLGGEPGVTINTADLPIVPN 222
+ +V YLL+HGAD PL A EV LL + G +N ADL
Sbjct: 53 NRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL-VKHGAVVNVADL----- 106
Query: 223 YIKNEPLDPRV--NDYQVSNQNRTHQTNPVTANQN 255
K PL Y++ H +P N++
Sbjct: 107 -WKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRD 140
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 146 DINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT 196
D+N Q D +G++ LHWA + G+ +V L+ GA +++ ++TPL LA
Sbjct: 31 DLN-QGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 80
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 129 SCLGDFEAVCE-LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
+C AV E L+ +G IN + + T LH AA G +DIV LL++ AD + +
Sbjct: 46 ACREGRSAVVEMLIMRGARINVMNRGDD-TPLHLAASHGHRDIVQKLLQYKADINAVNEH 104
Query: 188 EETPLALA 195
PL A
Sbjct: 105 GNVPLHYA 112
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A+ G + V +L+ DINA ++ +G LH+A GQ + L+ +GA S+
Sbjct: 79 AASHGHRDIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDLVANGALVSICNKY 137
Query: 188 EETPLALATKPEVRILL 204
E P+ A P +R LL
Sbjct: 138 GEMPVDKAKAP-LRELL 153
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A G +E LV G +N D+ +T LH AA +G+ +I LL+HGAD +
Sbjct: 81 LHNACSYGHYEVAELLVKHGAVVNVA-DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 139
Query: 185 TSKEETPLALATKPEVRI 202
TPL L + I
Sbjct: 140 NRDGNTPLDLVKDGDTDI 157
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 66/152 (43%), Gaps = 22/152 (14%)
Query: 111 GVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGW--TALHWAAKRGQK 168
G S+ DR QL EA+ GD E V +L + +N + D+ G T LH+AA +
Sbjct: 6 GNSEADR------QLLEAAKAGDVETVKKLCTV-QSVNCR-DIEGRQSTPLHFAAGYNRV 57
Query: 169 DIVSYLLKHGADKSLLTSKEETPLALATK---PEVRILLGGEPGVTINTADLPIVPNYIK 225
+V YLL+HGAD PL A EV LL + G +N ADL K
Sbjct: 58 SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL-VKHGAVVNVADL------WK 110
Query: 226 NEPLDPRV--NDYQVSNQNRTHQTNPVTANQN 255
PL Y++ H +P N++
Sbjct: 111 FTPLHEAAAKGKYEICKLLLQHGADPTKKNRD 142
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
GD + V + V+KG D+N + G LH+AA GQ +I+ +LL GAD + TP
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLE-GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITP 71
Query: 192 LALA 195
L A
Sbjct: 72 LLSA 75
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 146 DINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT 196
D+N Q D +G++ LHWA + G+ +V L+ GA +++ ++TPL LA
Sbjct: 26 DLN-QGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 75
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 129 SCLGDFEAVCE-LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
+C AV E L+ +G IN + + T LH AA G +DIV LL++ AD + +
Sbjct: 41 ACREGRSAVVEMLIMRGARINVMNRGDD-TPLHLAASHGHRDIVQKLLQYKADINAVNEH 99
Query: 188 EETPLALA 195
PL A
Sbjct: 100 GNVPLHYA 107
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A+ G + V +L+ DINA ++ +G LH+A GQ + L+ +GA S+
Sbjct: 74 AASHGHRDIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDLVANGALVSICNKY 132
Query: 188 EETPLALATKP 198
E P+ A P
Sbjct: 133 GEMPVDKAKAP 143
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A G +E LV G +N D+ +T LH AA +G+ +I LL+HGAD +
Sbjct: 83 LHNACSYGHYEVAELLVKHGAVVNVA-DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 141
Query: 185 TSKEETPLALATKPEVRI 202
TPL L + I
Sbjct: 142 NRDGNTPLDLVKDGDTDI 159
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 67/153 (43%), Gaps = 22/153 (14%)
Query: 110 LGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGW--TALHWAAKRGQ 167
LG S+ DR QL EA+ GD E V +L + +N + D+ G T LH+AA +
Sbjct: 7 LGNSEADR------QLLEAAKAGDVETVKKLCTV-QSVNCR-DIEGRQSTPLHFAAGYNR 58
Query: 168 KDIVSYLLKHGADKSLLTSKEETPLALATK---PEVRILLGGEPGVTINTADLPIVPNYI 224
+V YLL+HGAD PL A EV LL + G +N ADL
Sbjct: 59 VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL-VKHGAVVNVADL------W 111
Query: 225 KNEPLDPRV--NDYQVSNQNRTHQTNPVTANQN 255
K PL Y++ H +P N++
Sbjct: 112 KFTPLHEAAAKGKYEICKLLLQHGADPTKKNRD 144
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
L A C G E V LV G+++NA D +GWT LH AA + +L++ GA
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAA-DSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L ++S G+F+ V ++ + D + +D G TALH A G +IV +L++ G + +
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPND-EGITALHNAVCAGHTEIVKFLVQFGVNVNAA 99
Query: 185 TSKEETPLALAT 196
S TPL A
Sbjct: 100 DSDGWTPLHCAA 111
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
L A C G E V LV G+++NA D +GWT LH AA + +L++ GA
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAA-DSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L ++S G+F+ V ++ + D + +D G TALH A G +IV +L++ G + +
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPND-EGITALHNAVCAGHTEIVKFLVQFGVNVNAA 99
Query: 185 TSKEETPLALAT 196
S TPL A
Sbjct: 100 DSDGWTPLHCAA 111
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 144 GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
G+++ +Q +G + LH AA G+ D++ LLKHGA+ + + PL LA +
Sbjct: 78 GVNVTSQ---DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ 128
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
G E V L+ G INA ++ G TALH A +V LL HGA +L ++ T
Sbjct: 163 GHHELVALLLQHGASINASNN-KGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTA 221
Query: 192 LALATK 197
+ A +
Sbjct: 222 VDCAEQ 227
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 120 YLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
Y + +A+ G +E ELV G D+ Q D T LHWAA + D+V Y + GA
Sbjct: 8 YSTWDIVKATQYGIYERCRELVEAGYDVR-QPDKENVTLLHWAAINNRIDLVKYYISKGA 66
Query: 180 DKSLLTSK-EETPLALATK 197
L TPL AT+
Sbjct: 67 IVDQLGGDLNSTPLHWATR 85
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 141 VSKGIDINA-QHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
+SKG ++ D+N T LHWA ++G +V L+K+GAD SL+ + + + LA +
Sbjct: 62 ISKGAIVDQLGGDLNS-TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G V +L+ G D + D G + +H AA+ G IV+YL+ G D ++
Sbjct: 80 LHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138
Query: 185 TSKEETPLALAT 196
TPL A
Sbjct: 139 DQNGMTPLMWAA 150
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 157 TALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
TALHWA G ++S LL+ GA+ K E+ L LA +
Sbjct: 179 TALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQ 219
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKR 165
A+ G V L++KG D++ D NG T L WAA R
Sbjct: 116 AAQFGHTSIVAYLIAKGQDVDMM-DQNGMTPLMWAAYR 152
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A G E V L+ G+ +N + D GW+ LH AA G+ +IV LL GA + +
Sbjct: 45 LHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGRDEIVKALLGKGAQVNAV 103
Query: 185 TSKEETPLALAT---KPEVRILL 204
TPL A + E+ ++L
Sbjct: 104 NQNGCTPLHYAASKNRHEIAVML 126
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 110 LGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKD 169
LGV D+ L A+ G E V L+ KG +NA + NG T LH+AA + + +
Sbjct: 63 LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV-NQNGCTPLHYAASKNRHE 121
Query: 170 IVSYLLKHGAD 180
I LL+ GA+
Sbjct: 122 IAVMLLEGGAN 132
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
G E + E + + + D + TALHWA G +IV +LL+ G + +P
Sbjct: 18 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 77
Query: 192 LALATKPE----VRILLGGEPGVTINT 214
L +A V+ LLG G +N
Sbjct: 78 LHIAASAGRDEIVKALLG--KGAQVNA 102
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A G E V L+ G+ +N + D GW+ LH AA G+ +IV LL GA + +
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGRDEIVKALLGKGAQVNAV 102
Query: 185 TSKEETPLALAT---KPEVRILL 204
TPL A + E+ ++L
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVML 125
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 110 LGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKD 169
LGV D+ L A+ G E V L+ KG +NA + NG T LH+AA + + +
Sbjct: 62 LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV-NQNGCTPLHYAASKNRHE 120
Query: 170 IVSYLLKHGAD 180
I LL+ GA+
Sbjct: 121 IAVMLLEGGAN 131
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
G E + E + + + D + TALHWA G +IV +LL+ G + +P
Sbjct: 17 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Query: 192 LALATKPE----VRILLGGEPGVTINTAD 216
L +A V+ LLG G +N +
Sbjct: 77 LHIAASAGRDEIVKALLG--KGAQVNAVN 103
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A G E V L+ G+ +N + D GW+ LH AA G+ +IV LL GA + +
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGRDEIVKALLVKGAHVNAV 102
Query: 185 TSKEETPLALAT---KPEVRILL 204
TPL A + E+ ++L
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVML 125
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 110 LGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKD 169
LGV D+ L A+ G E V L+ KG +NA + NG T LH+AA + + +
Sbjct: 62 LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHE 120
Query: 170 IVSYLLKHGAD 180
I LL+ GA+
Sbjct: 121 IAVMLLEGGAN 131
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHG 178
D + TALHWA G +IV +LL+ G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLG 63
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A G E V L+ G+ +N + D GW+ LH AA G +IV LL GA + +
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGXDEIVKALLVKGAHVNAV 102
Query: 185 TSKEETPLALAT---KPEVRILL 204
TPL A + E+ ++L
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVML 125
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 110 LGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKD 169
LGV D+ L A+ G E V L+ KG +NA + NG T LH+AA + + +
Sbjct: 62 LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHE 120
Query: 170 IVSYLLKHGAD 180
I LL+ GA+
Sbjct: 121 IAVMLLEGGAN 131
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHG 178
D + TALHWA G +IV +LL+ G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLG 63
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 81/217 (37%), Gaps = 44/217 (20%)
Query: 42 ELNIDSPQTILKIRKL---PNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIV------ 92
EL+ D L + K PN + ++ VA T+ QE L L+ D H +V
Sbjct: 33 ELSPDLISACLALEKYLDNPNALTERELKVAYTTVLQEW-LRLACRSDAHPELVRRHLVT 91
Query: 93 ------------------NGMENTHLNSARLPFSVL------GVSDMD---RVKYLEEQL 125
NG H + + F V+ GV +D R Y L
Sbjct: 92 FRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIML 151
Query: 126 REASCLG---DFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKS 182
+ L D E V +L G +INA+ G TAL A G+ D+V LL AD +
Sbjct: 152 TALATLKTQDDIETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN 210
Query: 183 LLTSKEETPLALATK---PEVRILLGGEPGVTINTAD 216
+ T L A + E+ LL P I+ D
Sbjct: 211 VQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTD 247
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
L A C ++ V L++ G ++N+ D +GWT LH AA I L++HGA
Sbjct: 58 LHNAICGANYSIVDFLITAGANVNSP-DSHGWTPLHCAASCNDTVICMALVQHGA 111
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 133 DFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
D E L+ +G DIN Q+ ++ L +A +G+ +I++Y+LKH
Sbjct: 51 DIEIAKALIDRGADINLQNSISDSPYL-YAGAQGRTEILAYMLKH 94
>pdb|3BP8|A Chain A, Crystal Structure Of MlcEIIB COMPLEX
pdb|3BP8|B Chain B, Crystal Structure Of MlcEIIB COMPLEX
Length = 406
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 34/142 (23%)
Query: 46 DSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARL 105
DSP I + IR K + RLT I + L + D IV+ R+
Sbjct: 121 DSPLLDRIISHIDQFFIRHQKKLERLT---SIAITLPGIIDTENGIVH----------RM 167
Query: 106 PFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALH--WAA 163
PF V +M + LE+ G+ + QHD++ WT + A
Sbjct: 168 PFYE-DVKEMPLGEALEQH------------------TGVPVYIQHDISAWTMAEALFGA 208
Query: 164 KRGQKDIVSYLLKHGADKSLLT 185
RG +D++ ++ H ++T
Sbjct: 209 SRGARDVIQVVIDHNVGAGVIT 230
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 102 SARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALH 160
SAR SV + + Y E L A+C+G E V L+ G DI AQ D G T LH
Sbjct: 102 SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQ-DSLGNTVLH 159
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 129 SCLGDFEAVCE--LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTS 186
+C G + + E I++N Q+ + G TALH AA +G DIV LL GA L
Sbjct: 113 ACHGGHKDIVEXLFTQPNIELNQQNKL-GDTALHAAAWKGYADIVQLLLAKGARTDLRNI 171
Query: 187 KEETPLALATKPEVRILLGGEPGVTINTADLPIVPNYIKNEPLD 230
+++ AT LL + G T L +Y+ +E D
Sbjct: 172 EKKLAFDXATNAACASLLKKKQG-TDAVRTLSNAEDYLDDEDSD 214
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 116 DRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLL 175
++ + ++ L EA+ G+ + E + + +N D G TAL+WA G KDIV L
Sbjct: 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKDIVEXLF 126
>pdb|1Z6R|A Chain A, Crystal Structure Of Mlc From Escherichia Coli
pdb|1Z6R|B Chain B, Crystal Structure Of Mlc From Escherichia Coli
pdb|1Z6R|C Chain C, Crystal Structure Of Mlc From Escherichia Coli
pdb|1Z6R|D Chain D, Crystal Structure Of Mlc From Escherichia Coli
Length = 406
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 144 GIDINAQHDMNGWTALH--WAAKRGQKDIVSYLLKHGADKSLLT 185
G+ + QHD++ WT + A RG +D++ ++ H ++T
Sbjct: 187 GVPVYIQHDISAWTXAEALFGASRGARDVIQVVIDHNVGAGVIT 230
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 27/63 (42%)
Query: 133 DFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPL 192
D E V L G D+N G T LH A + ++ LLK GAD + TPL
Sbjct: 170 DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL 229
Query: 193 ALA 195
A
Sbjct: 230 GSA 232
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 27/63 (42%)
Query: 133 DFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPL 192
D E V L G D+N G T LH A + ++ LLK GAD + TPL
Sbjct: 170 DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL 229
Query: 193 ALA 195
A
Sbjct: 230 GSA 232
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 140 LVSKGIDIN----AQHD---MNGWTALHWAAKRGQKDIVSYLL-KHGADKSLLTSKEETP 191
LV KG ++ A+ D G TALH+AA+ IV YL+ + G++K +TP
Sbjct: 257 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTP 316
Query: 192 LALATKPEVRI 202
+ LA + E RI
Sbjct: 317 IXLAAQ-EGRI 326
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 139 ELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT 196
E ++ G D+NA D + T L A ++ +V+YL K GAD ++ E + L A
Sbjct: 151 ECIAAGADVNAX-DCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAA 207
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
G ++ V L+ G + + D+ + +H AA+RG + V+ L+ +G + S TP
Sbjct: 80 GSWDCVNLLLQHGASVQPESDLA--SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTP 137
Query: 192 LALATKPEVR 201
L LA + + R
Sbjct: 138 LYLACENQQR 147
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 125 LREASCLGDFEAVCELVSKGIDIN---AQHDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
+ EA+ G ++ L+S+G +N A H + LH A G V LLKHGA
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHV----SPLHEACLGGHLSCVKILLKHGAQV 62
Query: 182 SLLTSKEETPL 192
+ +T+ TPL
Sbjct: 63 NGVTADWHTPL 73
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A G ++ V L+ G + + D+ + +H AA+RG + V+ L+ +G +
Sbjct: 129 LFNACVSGSWDCVNLLLQHGASVQPESDLA--SPIHEAARRGHVECVNSLIAYGGNIDHK 186
Query: 185 TSKEETPLALATKPEVR 201
S TPL LA + + R
Sbjct: 187 ISHLGTPLYLACENQQR 203
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 125 LREASCLGDFEAVCELVSKGIDIN---AQHDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
+ EA+ G ++ L+S+G +N A H + LH A G V LLKHGA
Sbjct: 63 MHEAAIHGHQLSLRNLISQGWAVNIITADHV----SPLHEACLGGHLSCVKILLKHGAQV 118
Query: 182 SLLTSKEETPL 192
+ +T+ TPL
Sbjct: 119 NGVTADWHTPL 129
>pdb|2DI3|A Chain A, Crystal Structure Of The Transcriptional Factor Cgl2915
From Corynebacterium Glutamicum
pdb|2DI3|B Chain B, Crystal Structure Of The Transcriptional Factor Cgl2915
From Corynebacterium Glutamicum
Length = 239
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 153 MNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
+ GW ALH +A+RG D+ LL+ D SL
Sbjct: 105 LEGWAALHSSAERGDWDVAEALLEKMDDPSL 135
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 145 IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
+++N D +G T LHW ++V +L+KHG+++ + E+ L A K
Sbjct: 121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK 173
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 147 INAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
+NAQ D NG T L+ AA+ G IV LL +GAD
Sbjct: 276 LNAQ-DSNGDTCLNIAARLGNISIVDALLDYGAD 308
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 137 VCE-LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
CE L+ G ++N Q D G LH A G + LK GAD S+ PL +A
Sbjct: 250 ACEFLLQNGANVN-QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 137 VCE-LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
CE L+ G ++N Q D G LH A G + LK GAD S+ PL +A
Sbjct: 250 ACEFLLQNGANVN-QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 137 VCE-LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
CE L+ G ++N Q D G LH A G + LK GAD S+ PL +A
Sbjct: 250 ACEFLLQNGANVN-QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|2IUS|A Chain A, E. Coli Ftsk Motor Domain
pdb|2IUS|B Chain B, E. Coli Ftsk Motor Domain
pdb|2IUS|C Chain C, E. Coli Ftsk Motor Domain
pdb|2IUS|D Chain D, E. Coli Ftsk Motor Domain
pdb|2IUS|E Chain E, E. Coli Ftsk Motor Domain
pdb|2IUS|F Chain F, E. Coli Ftsk Motor Domain
Length = 512
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/190 (19%), Positives = 77/190 (40%), Gaps = 14/190 (7%)
Query: 281 ADVVTTSHHSIVNHSTANTPAQLDELVLKVRI-AQDMDDDFIEIELNRLTELTYYSLLNI 339
AD+ H + + + ++ ++L + AQ D FI I+ ++ EL+ Y +
Sbjct: 162 ADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMID-PKMLELSVYEGIPH 220
Query: 340 CCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTM---------FQEIELVLSQMPDGHG 390
E+ D +R N + R+ K ++ L + E + ++ +PD +
Sbjct: 221 LLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYW 280
Query: 391 SIVNGMENTHLNSARLPFSAKGVNNYPSIHNT---KITRFCTRTTEEIPVCGVHDPLGSL 447
+ M+ H + P+ V+ + + T K+ R ++ G+H L +
Sbjct: 281 KPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQ 340
Query: 448 QGENDIIPGL 457
+ D+I GL
Sbjct: 341 RPSVDVITGL 350
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 129 SCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKE 188
+ LG + V L G D++ + G TALH AA + ++V L++ GAD + +
Sbjct: 84 AGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERG 143
Query: 189 ETPLALA 195
T L LA
Sbjct: 144 LTALELA 150
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 106 PFSVLGVSDMDRVKYLEE---QLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWA 162
P S ++R+K +E ++ A+ G + V L+ G+ Q+ G TALH A
Sbjct: 2 PGSXTDFPKLNRIKSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRF-GCTALHLA 60
Query: 163 AKRGQKDIVSYLLKHGADKSLLTSKEETPLAL 194
K G D YL G SL ++ LA+
Sbjct: 61 CKFGCVDTAKYLASVGEVHSLWHGQKPIHLAV 92
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 129 SCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKE 188
+ LG + V L G D++ + G TALH AA + ++V L++ GAD + +
Sbjct: 85 AGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERG 144
Query: 189 ETPLALA 195
T L LA
Sbjct: 145 LTALELA 151
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
+ +A+ G + + L+ D+N + D G LH AAK G +V +L+KH A
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,646,082
Number of Sequences: 62578
Number of extensions: 559624
Number of successful extensions: 1766
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1395
Number of HSP's gapped (non-prelim): 285
length of query: 464
length of database: 14,973,337
effective HSP length: 102
effective length of query: 362
effective length of database: 8,590,381
effective search space: 3109717922
effective search space used: 3109717922
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)