RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6441
(464 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 69.7 bits (171), Expect = 1e-14
Identities = 34/73 (46%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ KG D+NA+ D +G T LH AA+ G D+V LLKHGAD +
Sbjct: 44 LHLAAKNGHLEIVKLLLEKGADVNAR-DKDGNTPLHLAARNGNLDVVKLLLKHGADVNAR 102
Query: 185 TSKEETPLALATK 197
TPL LA K
Sbjct: 103 DKDGRTPLHLAAK 115
Score = 67.4 bits (165), Expect = 1e-13
Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ G D+NA+ D +G T LH AAK G +IV LL+ GAD +
Sbjct: 11 LHLAASNGHLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR 69
Query: 185 TSKEETPLALATKPE----VRILL 204
TPL LA + V++LL
Sbjct: 70 DKDGNTPLHLAARNGNLDVVKLLL 93
Score = 50.8 bits (122), Expect = 6e-08
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 150 QHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
D +G T LH AA G ++V LL++GAD + + TPL LA
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLA 47
Score = 50.1 bits (120), Expect = 1e-07
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLL 175
L A+ G+ + V L+ G D+NA+ D +G T LH AAK G ++V LL
Sbjct: 77 LHLAARNGNLDVVKLLLKHGADVNAR-DKDGRTPLHLAAKNGHLEVVKLLL 126
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 67.7 bits (166), Expect = 3e-14
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
A+ G+ E V L+ G D+NA+ D +G TALH AA+ G +IV LL+HGAD +L
Sbjct: 35 AARNGNLEIVKLLLEHGADVNAK-DKDGNTALHLAARNGNLEIVKLLLEHGADINL 89
Score = 63.8 bits (156), Expect = 8e-13
Identities = 38/96 (39%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G+ E V L+ KG D+N + TALH AA+ G +IV LL+HGAD +
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLG---DTDTALHLAARNGNLEIVKLLLEHGADVNAK 57
Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
T L LA + E V++LL E G IN D
Sbjct: 58 DKDGNTALHLAARNGNLEIVKLLL--EHGADINLKD 91
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 50.3 bits (121), Expect = 1e-08
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLL 175
G E V L+ KG+DIN D +G TALH AA+ G +++ LL
Sbjct: 12 GRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLKLLL 54
Score = 40.3 bits (95), Expect = 7e-05
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 155 GWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPL 192
G TALH AA G+ ++V YLL+ G D + T L
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTAL 38
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 47.9 bits (115), Expect = 6e-08
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGAD 180
+G T LH AA+ G ++V LL+ GAD
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGAD 27
Score = 26.0 bits (58), Expect = 4.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQ 150
A+ G E V L+ G D+NA+
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAR 31
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 48.5 bits (116), Expect = 9e-08
Identities = 24/56 (42%), Positives = 29/56 (51%)
Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
L+ G D NG T LH AAK G ++V +LLK G D +L S T L LA
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 29.6 bits (67), Expect = 0.38
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWA 162
A+ G E V L+ G+D+N D +G TAL A
Sbjct: 23 AAKYGALELVQWLLKPGVDLNL-RDSDGLTALDLA 56
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 52.3 bits (126), Expect = 3e-07
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
L+ GI INA++ G T LH+AA L+ GAD + ++S TPL+L
Sbjct: 243 LLIAGISINARNR-YGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLM 297
Score = 34.6 bits (80), Expect = 0.11
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 140 LVSKGIDINAQHDMNGWTALH--WAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
L+ G D+NA+ G T LH + ++ LL+ GAD + L TPLA+ K
Sbjct: 103 LIKAGADVNAKDK-VGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLK 161
Score = 29.6 bits (67), Expect = 4.4
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 135 EAVCELVSKGIDINAQHDMNGWTALHWAAKRGQK-DIVSYLLKHGAD 180
+ V L+ G D+NA + G+T LH D++ L+K GAD
Sbjct: 64 DIVRLLLEAGADVNAP-ERCGFTPLHLYLYNATTLDVIKLLIKAGAD 109
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 49.4 bits (117), Expect = 1e-06
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 132 GDFEAVCELVSKGI--DINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEE 189
G+ E L+ G D+N D +G T LHWAA G DIV LL+ GAD + S
Sbjct: 122 GNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGV 181
Query: 190 TPLALATK 197
T L A K
Sbjct: 182 TALDPAAK 189
Score = 45.6 bits (107), Expect = 2e-05
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 127 EASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQK-----DIVSYLLKHGADK 181
A+ GD + V L++ G D+NA+ D +G T LH AA G ++ LL+ GAD
Sbjct: 79 SAASKGDDKIVKLLLASGADVNAK-DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADL 137
Query: 182 SLLTSKEE---TPLALA 195
+ ++E TPL A
Sbjct: 138 DVNNLRDEDGNTPLHWA 154
Score = 37.9 bits (87), Expect = 0.007
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEE 189
GD + V L+ G D N++ + G TAL AAK G+ ++V LL G SLL E
Sbjct: 158 GDADIVELLLEAGADPNSR-NSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLE 214
Score = 33.3 bits (75), Expect = 0.18
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 148 NAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT 196
A D++G LH AA +G IV LL GAD + + +TPL LA
Sbjct: 66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAA 114
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 41.8 bits (99), Expect = 9e-06
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGAD 180
+G T LH AA+ G ++V LL GAD
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGAD 27
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 41.5 bits (98), Expect = 1e-05
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGAD 180
+G T LH AA+ G ++V LL+HGAD
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGAD 27
>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional.
Length = 169
Score = 43.1 bits (101), Expect = 6e-05
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH-GADKSLLTSKEETPLALA 195
L+ G DINAQ + G TALH AA R D+ +L G D + ++P LA
Sbjct: 83 LIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELA 139
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 44.7 bits (106), Expect = 7e-05
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPE 199
L+S G+ IN + D+ G+T LH+A + V YLL GA+ +L+ +TPL +A
Sbjct: 178 LLSYGVPINIK-DVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNN 236
Score = 43.1 bits (102), Expect = 2e-04
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 135 EAVCELVSKGIDINAQHDMNGWTALHWAA--KRGQKDIVSYLLKHGADKSLLTSKEETPL 192
E V L+ G ++NA D NG T L +A K IV YLL +GA+ ++ S E L
Sbjct: 87 EIVKLLLEYGANVNAP-DNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLL 145
Query: 193 ALATK 197
L +
Sbjct: 146 HLYLE 150
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 43.7 bits (103), Expect = 2e-04
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 114 DMDRV--KYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIV 171
+D V L +L + + GD L++ G D N + D +G T LH A G +V
Sbjct: 73 VIDPVVAHMLTVELCQLAASGDAVGARILLTGGADPNCR-DYDGRTPLHIACANGHVQVV 131
Query: 172 SYLLKHGADKSLLTSKEETPLALA 195
LL+ GAD +LL +TPL LA
Sbjct: 132 RVLLEFGADPTLLDKDGKTPLELA 155
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 42.6 bits (100), Expect = 3e-04
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 133 DFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPL 192
D++ + L+ G+D+NA+ + G TALH + K +K + LL++GAD + L S + TPL
Sbjct: 247 DYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERK--LKLLLEYGADINSLNSYKLTPL 304
Query: 193 ALATK 197
+ A K
Sbjct: 305 SSAVK 309
Score = 36.8 bits (85), Expect = 0.025
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK-- 197
L+S G DIN + G TALH+A + + + LL +GA+ ++ +PL A K
Sbjct: 153 LLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHY 212
Query: 198 --PEVRILLGGEPGVTINTADL 217
P V ILL E G + + D
Sbjct: 213 NKPIVHILL--ENGASTDARDK 232
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 41.6 bits (97), Expect = 8e-04
Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 15/148 (10%)
Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPE 199
L+ G D+NA+ D+ T +H+AA+RG +V+ LL +GAD +++ + + L A +
Sbjct: 164 LLEGGADVNAK-DIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSK 222
Query: 200 ----VRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTHQTNPVTANQN 255
++ ++ IN DL ++ I+NE L+ + Y + N + +N
Sbjct: 223 NIDTIKAIIDNRS--NINKNDLSLL-KAIRNEDLETSLLLY-----DAGFSVNSIDDCKN 274
Query: 256 VVTTSHHSIVNHSTTNTPAQLDGKSADV 283
T HH+ S + +L + ADV
Sbjct: 275 --TPLHHASQAPSLSRLVPKLLERGADV 300
Score = 36.2 bits (83), Expect = 0.037
Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 7/148 (4%)
Query: 125 LREASCLGDF-EAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
L +AS L + V L+ G ++NA+ D T +H+AA R I++ LL +GAD
Sbjct: 345 LHQASTLDRNKDIVITLLELGANVNAR-DYCDKTPIHYAAVRNNVVIINTLLDYGADIEA 403
Query: 184 LTSKEETPLALA---TKP--EVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQV 238
L+ K T L A T P V+ L+ V DL +Y + V + +
Sbjct: 404 LSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLL 463
Query: 239 SNQNRTHQTNPVTANQNVVTTSHHSIVN 266
N + N ++ +H IVN
Sbjct: 464 DNGADVNAINIQNQYPLLIALEYHGIVN 491
Score = 30.0 bits (67), Expect = 3.5
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 133 DFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQ-KDIVSYLLKHGADKSLLTSKEETP 191
D E + L+ G D+NA + T LH A+ + KDIV LL+ GA+ + ++TP
Sbjct: 320 DTENIRTLIMLGADVNAADRLYI-TPLHQASTLDRNKDIVITLLELGANVNARDYCDKTP 378
Query: 192 LALA 195
+ A
Sbjct: 379 IHYA 382
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 40.6 bits (95), Expect = 0.001
Identities = 33/117 (28%), Positives = 45/117 (38%), Gaps = 20/117 (17%)
Query: 62 IRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYL 121
R++ +V L F + L + G NG E+ N A ++L V+ L
Sbjct: 485 TRQEDNVVILKNFLQHHKELHDLNVGDLLGDNGGEHDDPNMA---SNLLTVASTGNAALL 541
Query: 122 EEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHG 178
EE L+ DI D G T LH AA +G +D V LLKH
Sbjct: 542 EELLK--------------AKLDPDIG---DSKGRTPLHIAASKGYEDCVLVLLKHA 581
Score = 37.9 bits (88), Expect = 0.010
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L A+ D A+ EL+ +G++++++ D G TAL A D+V L+ +GAD
Sbjct: 626 LCTAAKRNDLTAMKELLKQGLNVDSE-DHQGATALQVAMAEDHVDMVRLLIMNGAD 680
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 39.6 bits (92), Expect = 0.003
Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 17/176 (9%)
Query: 135 EAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLAL 194
+ + ++ GID+N + D T LH+A K+G + + L ++GAD ++ P+ +
Sbjct: 105 DMIKTILDCGIDVNIK-DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHI 163
Query: 195 ATKPE----VRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVN--DYQVSNQNRTHQTN 248
A K +++LL E G N V + PL DY H +
Sbjct: 164 AIKHNFFDIIKLLL--EKGAYAN------VKDNNGESPLHNAAEYGDYACIKLLIDHGNH 215
Query: 249 PVTANQNVVTTSHHSIVNHSTTNTPAQLDGKSADVVTTSHHSIVNHSTANTPAQLD 304
+ +N T H++I+ H+ + ++ S + + ++H+ N P +D
Sbjct: 216 IMNKCKNGFTPLHNAII-HNRSAIELLINNASINDQDIDGSTPLHHAI-NPPCDID 269
Score = 35.7 bits (82), Expect = 0.045
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 136 AVCELVSKGIDINAQHDMNGWTALHWAAKRG-QKDIVSYLLKHGADKSLLTSKEETPLAL 194
+ EL+ IN Q D++G T LH A DI+ LL H AD S+ +K E P+
Sbjct: 236 SAIELLINNASINDQ-DIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDT 294
Query: 195 ATK 197
A K
Sbjct: 295 AFK 297
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 39.2 bits (91), Expect = 0.004
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
+E +L +A GD +AV EL+ G + +G T LH A + DI+ L+ GAD
Sbjct: 68 IESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD 127
Query: 181 KSLLTSKEETPLALA 195
+ + + +PL LA
Sbjct: 128 PDIPNTDKFSPLHLA 142
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 33.9 bits (77), Expect = 0.20
Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 133 DFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPL 192
D V EL+ +G N D +G LH A+K IV+ LL HGAD + + +TPL
Sbjct: 51 DERFVEELLHRGYSPNETDD-DGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPL 109
Query: 193 AL--ATKPEV--RILLGGEPGVTINTA 215
T EV RI L + G IN +
Sbjct: 110 YYLSGTDDEVIERINLLVQYGAKINNS 136
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 33.4 bits (76), Expect = 0.27
Identities = 44/214 (20%), Positives = 81/214 (37%), Gaps = 42/214 (19%)
Query: 99 HLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQH------- 151
HL+ +P L S+ + ++ C D C ++S I+I +
Sbjct: 392 HLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLC--DMSYACPILST-INICLPYLKDINMI 448
Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPE-----VRILLGG 206
D G T LH A + ++ +VS LL+ G+D ++ ++ T +A+A +++LL
Sbjct: 449 DKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLLCH 508
Query: 207 EPGVTINTADLPIVPNYIKN-----------------------EPLDPRVNDY-QVSNQN 242
+P + L + N + N E + R NDY + NQ
Sbjct: 509 KPTLDCVIDSLREISNIVDNAYAIKQCIKYAMIIDDCTSSKIPESISQRYNDYIDLCNQE 568
Query: 243 RTHQTNPVTANQ---NVVTTSHHSIVNHSTTNTP 273
+ +++ T H + + H N P
Sbjct: 569 LNEMKKIMVGGNTMFSLIFTDHGAKIIHRYANNP 602
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 31.4 bits (71), Expect = 0.50
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH-GADKSLLTSKEETPLALATK 197
L+ G DIN + + G T LH A ++ ++L G + +L +TP +A +
Sbjct: 77 LMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACE 135
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 31.3 bits (71), Expect = 1.2
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 21/87 (24%)
Query: 108 SVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQ 167
S+LG+S + VK L E L + + + G D+ ++
Sbjct: 240 SLLGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADL----------------RQFT 283
Query: 168 KDIVSYL-----LKHGADKSLLTSKEE 189
+D+V YL L GAD+SLL +
Sbjct: 284 RDLVEYLRQVMLLNSGADRSLLDLTAD 310
>gnl|CDD|184506 PRK14100, PRK14100, 2-phosphosulfolactate phosphatase; Provisional.
Length = 237
Score = 30.6 bits (69), Expect = 1.4
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 174 LLKHGADKSLLTSKEETPLALATKPEVRILLGGEPGVTINTADL 217
L+ GA+ LT E+ ALA + E +L G G+ DL
Sbjct: 34 FLEAGAEALYLTPTPES--ALAFRDEDVVLAGERGGLKPPGFDL 75
>gnl|CDD|99785 cd06188, NADH_quinone_reductase, Na+-translocating NADH:quinone
oxidoreductase (Na+-NQR) FAD/NADH binding domain.
(Na+-NQR) provides a means of storing redox reaction
energy via the transmembrane translocation of Na2+ ions.
The C-terminal domain resembles ferredoxin:NADP+
oxidoreductase, and has NADH and FAD binding sites.
(Na+-NQR) is distinct from H+-translocating NADH:quinone
oxidoreductases and noncoupled NADH:quinone
oxidoreductases. The NAD(P) binding domain of ferredoxin
reductase-like proteins catalyze electron transfer
between an NAD(P)-binding domain of the alpha/beta class
and a discrete (usually N-terminal) domain which vary in
orientation with respect to the NAD(P) binding domain.
The N-terminal domain of this group typically contains
an iron-sulfur cluster binding domain.
Length = 283
Score = 30.4 bits (69), Expect = 1.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 293 NHSTANTPAQLDELVLKVRIAQ 314
+S AN PA+ EL L VRIA
Sbjct: 88 AYSLANYPAEEGELKLNVRIAT 109
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 30.0 bits (67), Expect = 2.2
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 87 GHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGID 146
GH ++ + + N+ RL ++L + + E L +A+ L D + V L+ G+D
Sbjct: 30 GHSALYYAIAD---NNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGMD 86
Query: 147 INAQHDMNGWTALHWAAKRGQKDIVSYLLK 176
++Q D G TAL++A G V +K
Sbjct: 87 -DSQFDDKGNTALYYAVDSGNMQTVKLFVK 115
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 30.6 bits (69), Expect = 2.2
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 137 VCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
+ + + IDIN Q D G+ L+++ + I YLL+ G D +++T T L A
Sbjct: 241 ILDFIFSYIDIN-QVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTA 298
Score = 30.2 bits (68), Expect = 2.6
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRG---QKDIVSYLLKHGADKSLLTSKEETPLALAT 196
L+ G DIN + + +G T L+ G +I+ +++++GAD +LL T L +
Sbjct: 95 LIENGADIN-KKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYL 153
Query: 197 KPE-------VRILLGGEPGVTINT 214
+ +++LL E GV INT
Sbjct: 154 QSNHHIDIEIIKLLL--EKGVDINT 176
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 30.3 bits (68), Expect = 2.4
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 137 VCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
+ +L I+ Q D G T L+ A G D+VS+LL++GA+ + + S T L +A
Sbjct: 203 IYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVA 261
>gnl|CDD|132697 TIGR03658, IsdH_HarA, haptoglobin-binding heme uptake protein HarA.
HarA is a heme-binding NEAT-domain (NEAr Transporter,
pfam05031) protein which has been shown to bind to the
haptoglobin-hemoglobin complex in order to extract heme
from it. HarA has also been reported to bind hemoglobin
directly. HarA (also known as IsdH) contains three NEAT
domains as well as a sortase A C-terminal signal for
localization to the cell wall. The heme bound at the
third of these NEAT domains has been shown to be
transferred to the IsdA protein also localized at the
cell wall, presumably through an additional specific
protein-protein interaction. Haptoglobin is a hemoglobin
carrier protein involved in scavenging hemoglobin in the
blood following red blood cell lysis and targetting it
to the liver.
Length = 895
Score = 29.8 bits (66), Expect = 3.9
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 221 PNYIKNEPLDPRVNDYQVSNQNRTHQTNPVTANQNVVTTSHHSIVNHSTTNT--PAQLDG 278
P+ +K++ D V + Q S+ + ++QTN T+NQN T ++ + +TTN PAQ
Sbjct: 227 PSLVKSDTNDAVVTNDQ-SSSDASNQTNTNTSNQNTSTINNANNQPQATTNMSQPAQPKS 285
Query: 279 KSADVVTTSHHSIVNHSTANTPAQLDE 305
+ +S + +S NT + +E
Sbjct: 286 SANADQASSQPAHETNSNGNTNDKTNE 312
>gnl|CDD|184511 PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 450
Score = 29.6 bits (67), Expect = 4.3
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 162 AAKRGQKDIVSYLLKHGADKSLLTSKEETPLA----LATKPEVRILLGGEPGVTINTADL 217
A G + +L K GA L KEE L + + ++LG P + DL
Sbjct: 13 AGVSGLA-LAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDL 71
Query: 218 PIV 220
+V
Sbjct: 72 VVV 74
>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional.
Length = 166
Score = 28.6 bits (64), Expect = 5.0
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH-GADKSLLTSKEETPLALATK 197
LV+ G DINA+ G T LH AA ++ +L + G + + + ET +A K
Sbjct: 79 LVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYK 137
>gnl|CDD|114140 pfam05399, EVI2A, Ectropic viral integration site 2A protein
(EVI2A). This family contains several mammalian
ectropic viral integration site 2A (EVI2A) proteins. The
function of this protein is unknown although it is
thought to be a membrane protein and may function as an
oncogene in retrovirus induced myeloid tumours.
Length = 227
Score = 28.9 bits (64), Expect = 5.2
Identities = 22/81 (27%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Query: 208 PGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTHQTNPVTANQNVVTTSHHSIVNH 267
G T N DL V NE + N T+ TNP T N +T
Sbjct: 22 LGTTTNYTDLWAV----SNEIWYSICQNLTSRNIPETNNTNPPTPEVNGKSTP----TAE 73
Query: 268 STTNTPAQLDGKSADVVTTSH 288
T+TP L S T
Sbjct: 74 PQTSTPVPLYSTSGSNFFTPS 94
>gnl|CDD|240609 cd12796, LbR_Ice_bind, Ice-binding protein, left-handed beta-roll.
The ice-binding protein of the grass Lolium perenne
(LpIBP) discourages the recrystallization of ice.
Ice-binding proteins produced by organisms to prevent
the growing of ice are termed to anti-freeze proteins.
LpIBP consists of an unusual left-handed beta roll.
Ice-binding is mediated by a flat beta-sheet on one side
of the helix.
Length = 114
Score = 27.7 bits (62), Expect = 5.4
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 213 NTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTHQTNPVTANQNVVTTSHHSIV--NHSTT 270
N N I + +N N ++ N N V+ ++H + N+ T
Sbjct: 9 NRVLSGSENNVIAG---GQNLVVSGSNNLVSGGNHNVLSGNNNTVSGNNHVVTGSNNVVT 65
Query: 271 NTPAQLDGKSADVVTTSHHSI 291
+ G S +VV+ S++++
Sbjct: 66 GNGNTVSG-SNNVVSGSNNTV 85
>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein. SOG2 proteins in
Saccharomyces cerevisiae are involved in cell separation
and cytokinesis.
Length = 419
Score = 28.9 bits (65), Expect = 5.5
Identities = 15/95 (15%), Positives = 30/95 (31%)
Query: 207 EPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTHQTNPVTANQNVVTTSHHSIVN 266
+ +N P+ R+ V+ ++ + N T S +
Sbjct: 152 LQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLESPSNLQ 211
Query: 267 HSTTNTPAQLDGKSADVVTTSHHSIVNHSTANTPA 301
+T P +G S +S ++ S+ TP
Sbjct: 212 VTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPR 246
>gnl|CDD|233461 TIGR01547, phage_term_2, phage terminase, large subunit, PBSX
family. This model detects members of a highly
divergent family of the large subunit of phage
terminase. All members are encoded by phage genomes or
within prophage regions of bacterial genomes. This is a
distinct family from pfam03354 [Mobile and
extrachromosomal element functions, Prophage
functions].
Length = 396
Score = 28.5 bits (64), Expect = 7.6
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 31 TYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQM 84
T+ L + K Q IL RK+ N+I R ++F++IE +LS
Sbjct: 15 TFAIALKLVEKLAINKKQQNILAARKVQNSI--------RDSVFKDIENLLSIE 60
Score = 28.5 bits (64), Expect = 7.6
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 332 TYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQM 385
T+ L + K Q IL RK+ N+I R ++F++IE +LS
Sbjct: 15 TFAIALKLVEKLAINKKQQNILAARKVQNSI--------RDSVFKDIENLLSIE 60
>gnl|CDD|224697 COG1783, XtmB, Phage terminase large subunit [General function
prediction only].
Length = 414
Score = 28.6 bits (64), Expect = 8.7
Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 24/132 (18%)
Query: 51 ILKIRKLPNT---IIRKDKDVARLTMFQEIELVLSQMPDGHGSIVN--GMENTHL-NSAR 104
I K+ P +IR+ ++ + + + + LS++ ++ E R
Sbjct: 46 IEKLLSEPGIDVLVIREVENTHKQSTYALFKEALSELGVTKFFKISKSSPEIILKDTGQR 105
Query: 105 LPFSVLGVSDMDRVK----------YLEEQLREASCLGDFEAVCEL---VSKGIDINAQH 151
+ F G+ D ++K + EE E S D E + EL KG I + +
Sbjct: 106 IIFK--GLDDPAKLKSIAVNWISDLWFEEAS-EFSYEDDIELLVELRRRELKGHIILSSN 162
Query: 152 DM--NGWTALHW 161
+ N WT HW
Sbjct: 163 PVSFNPWTYKHW 174
>gnl|CDD|177117 MTH00042, ND3, NADH dehydrogenase subunit 3; Validated.
Length = 116
Score = 27.3 bits (61), Expect = 9.0
Identities = 9/9 (100%), Positives = 9/9 (100%)
Query: 100 LNSARLPFS 108
LNSARLPFS
Sbjct: 45 LNSARLPFS 53
Score = 27.3 bits (61), Expect = 9.0
Identities = 9/9 (100%), Positives = 9/9 (100%)
Query: 401 LNSARLPFS 409
LNSARLPFS
Sbjct: 45 LNSARLPFS 53
>gnl|CDD|147995 pfam06128, Shigella_OspC, Shigella flexneri OspC protein. This
family consists of the Shigella flexneri specific
protein OspC. The function of this family is unknown but
it is thought that Osp proteins may be involved in post
invasion events related to virulence. Since bacterial
pathogens adapt to multiple environments during the
course of infecting a host, it has been proposed that
Shigella evolved a mechanism to take advantage of a
unique intracellular cue, which is mediated through
MxiE, to express proteins when the organism reaches the
eukaryotic cytosol.
Length = 284
Score = 28.3 bits (63), Expect = 9.6
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 140 LVSKG-IDINA--QHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
+++G +D+NA + +G T L A K G +++++ LLKHGA
Sbjct: 236 FINRGLVDVNAKFEKVNSGDTMLDNAVKYGNREMIAALLKHGA 278
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.383
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,258,834
Number of extensions: 2250596
Number of successful extensions: 1900
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1870
Number of HSP's successfully gapped: 76
Length of query: 464
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 364
Effective length of database: 6,502,202
Effective search space: 2366801528
Effective search space used: 2366801528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.2 bits)