RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6441
(464 letters)
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 81.5 bits (202), Expect = 4e-19
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 118 VKYLEEQ-----------LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRG 166
L + L EA+ G + V L++ G D+ A+ D NG T LH AA+ G
Sbjct: 10 SSGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNG 68
Query: 167 QKDIVSYLLKHGADKSLLTSKEETPLALATK 197
++V LL+ GAD +T ++
Sbjct: 69 HLEVVKLLLEAGADVXAQDKFGKTAFDISID 99
Score = 71.8 bits (177), Expect = 1e-15
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
S LV +G + + + L AA+ GQ D V L+ +GAD +
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS----DLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56
Query: 188 EETPLALATK 197
TPL LA +
Sbjct: 57 GSTPLHLAAR 66
Score = 42.2 bits (100), Expect = 2e-05
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYL 174
L A+ G E V L+ G D+ AQ D G TA + G +D+ L
Sbjct: 61 LHLAARNGHLEVVKLLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLAEIL 109
Score = 40.6 bits (96), Expect = 1e-04
Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 9/59 (15%)
Query: 162 AAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
+ S L+ G+ S L A EVRIL+ G + D
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILM--ANGADVAAKD 54
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 83.2 bits (207), Expect = 5e-19
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
+ + + G+ + + + IN D G+T L WAA GQ +V +LL++GAD LL
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
E+ L+LA V++LL + GV +N D
Sbjct: 66 GKGRESALSLACSKGYTDIVKMLL--DCGVDVNEYD 99
Score = 79.7 bits (198), Expect = 7e-18
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A G + V L+ G+D+N D NG T L +A V LL+ GAD ++
Sbjct: 73 LSLACSKGYTDIVKMLLDCGVDVNEY-DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 131
Query: 185 TSKEETPLALATK 197
T + LA
Sbjct: 132 TDSGYNSMDLAVA 144
Score = 78.2 bits (194), Expect = 3e-17
Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G V L+ G D +AL A +G DIV LL G D +
Sbjct: 40 LMWAAAHGQIAVVEFLLQNGADPQLL-GKGRESALSLACSKGYTDIVKMLLDCGVDVNEY 98
Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
TPL A + V++LL E G
Sbjct: 99 DWNGGTPLLYAVHGNHVKCVKMLL--ESGADPTIET 132
Score = 69.7 bits (172), Expect = 2e-14
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
L A + V L+ G D + +G+ ++ A G + + + H
Sbjct: 106 LLYAVHGNHVKCVKMLLESGADPTIE-TDSGYNSMDLAVALGYRSVQQVIESHLLKL 161
Score = 61.3 bits (150), Expect = 2e-11
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KPEVRILLGGEPG 209
++H A +G+ ++ ++ + + TPL A V LL + G
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLL--QNG 59
Query: 210 VTINTAD 216
Sbjct: 60 ADPQLLG 66
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 79.7 bits (198), Expect = 3e-18
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
A GD + V + V+KG D+N G LH+AA GQ +I+ +LL GAD +
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69
Query: 185 TSKEETPLALA 195
TPL A
Sbjct: 70 DKHHITPLLSA 80
Score = 79.4 bits (197), Expect = 3e-18
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E + L+ KG DINA D + T L A G V LL GADK++
Sbjct: 44 LHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 102
Query: 185 TSKEETPLALATKPEVRILL 204
T ++ LL
Sbjct: 103 GPDGLTAFEATDNQAIKALL 122
Score = 58.2 bits (142), Expect = 1e-10
Identities = 11/42 (26%), Positives = 13/42 (30%)
Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
WA K G D V + G D + PL A
Sbjct: 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYA 47
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 80.2 bits (199), Expect = 6e-18
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L AS G + V L+ + +DIN D NG T L +A + V LL GAD +
Sbjct: 73 LSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPLLYAVRGNHVKCVEALLARGADLTTE 131
Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
TP+ LA + +++ + + ++
Sbjct: 132 ADSGYTPMDLAVALGYRKVQQVIE--NHILKLFQSN 165
Score = 79.8 bits (198), Expect = 8e-18
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 125 LREASCLGDFEAVCELVSKGID-INAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
+ + + G+ + + E + KG + +N D G+T L WA+ G+ + V +LL+ GAD +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKP-DERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 184 LTSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
L + E+ L+LA+ + V +LL E V IN D
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLL--ERDVDINIYD 99
Score = 77.8 bits (193), Expect = 4e-17
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L AS G+ E V L+ G D + +AL A+ G DIV LL+ D ++
Sbjct: 40 LIWASAFGEIETVRFLLEWGADPHIL-AKERESALSLASTGGYTDIVGLLLERDVDINIY 98
Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
TPL A + + V LL G + T
Sbjct: 99 DWNGGTPLLYAVRGNHVKCVEALL--ARGADLTTEA 132
Score = 70.9 bits (175), Expect = 1e-14
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A + V L+++G D+ + +G+T + A G + + + H
Sbjct: 106 LLYAVRGNHVKCVEALLARGADLTTE-ADSGYTPMDLAVALGYRKVQQVIENHILKLFQS 164
Query: 185 TSKEETP 191
P
Sbjct: 165 NLVPADP 171
Score = 54.0 bits (131), Expect = 8e-09
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 155 GWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKE-ETPLALATK---PE-VRILLGGEPG 209
++H A +G+ D + L+ G + + TPL A+ E VR LL E G
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL--EWG 59
Query: 210 VTINTAD 216
+
Sbjct: 60 ADPHILA 66
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 78.2 bits (194), Expect = 1e-17
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L EA G + V L+ +N + LH AAK G DIV LL +GA ++ +
Sbjct: 47 LHEACNHGHLKVVELLLQHKALVNTT-GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV 105
Query: 185 TSKEETPLALATK 197
P+
Sbjct: 106 NIFGLRPVDYTDD 118
Score = 76.7 bits (190), Expect = 5e-17
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
AS GD +V L+ G D N + D GWT LH A G +V LL+H A + +
Sbjct: 17 ASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ 75
Query: 188 EETPLALATK 197
++PL A K
Sbjct: 76 NDSPLHDAAK 85
Score = 64.0 bits (157), Expect = 1e-12
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 144 GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
GID + G T LH A+ +G V YLL++G+D ++ TPL A
Sbjct: 1 GIDPFT--NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEA 50
Score = 61.7 bits (151), Expect = 8e-12
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKS 182
L +A+ G + V L+S G NA ++ G + + K ++ K+ + +
Sbjct: 80 LHDAAKNGHVDIVKLLLSYGASRNAV-NIFGLRPVDYTDDESMKSLLLLPEKNESSSA 136
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 82.2 bits (204), Expect = 1e-17
Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A + + V LV G +IN D GW LH AA G DI YL+ GA + S+
Sbjct: 80 ACIDDNVDMVKFLVENGANINQP-DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSE 138
Query: 188 EETPLALATK---PEVRILLGGEPGVTINTAD 216
+TPL +A + E+ GV I A
Sbjct: 139 GDTPLDIAEEEAMEELLQNEVNRQGVDIEAAR 170
Score = 80.6 bits (200), Expect = 5e-17
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A+ G E + L+ D+N + D +GWT LH AA G+++ L+++ D +
Sbjct: 206 AAAKGYTEVLKLLIQARYDVNIK-DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKV 264
Query: 188 EETPLALATKPEVRIL--LGGEPGVTINTAD 216
+T +A + + L L + + +
Sbjct: 265 GQTAFDVADEDILGYLEELQKKQNLLHSEKR 295
Score = 76.8 bits (190), Expect = 9e-16
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 127 EASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTS 186
A GD E V L+ +G DIN +++G TALH A D+V +L+++GA+ + +
Sbjct: 46 AACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104
Query: 187 KEETPLALA 195
+ PL A
Sbjct: 105 EGWIPLHAA 113
Score = 73.7 bits (182), Expect = 1e-14
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 116 DRVKYL--------EEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQ 167
+ ++ E +E + +A L S I+ H +G TALH AA +G
Sbjct: 153 ELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR-HAKSGGTALHVAAAKGY 211
Query: 168 KDIVSYLLKHGADKSLLTSKEETPLALATK 197
+++ L++ D ++ TPL A
Sbjct: 212 TEVLKLLIQARYDVNIKDYDGWTPLHAAAH 241
Score = 62.9 bits (154), Expect = 4e-11
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLL-KHGADKSL 183
L A+ G + L+S+G + A + G T L A + ++++ + + G D
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA 168
Query: 184 LTSKEETPLALATKPEVRILLGGEPGVTINTAD 216
+EE + + L G +
Sbjct: 169 ARKEEERIMLRDA---RQWLNSG--HINDVRHA 196
Score = 61.0 bits (149), Expect = 2e-10
Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 8/93 (8%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
+G + V K + + A G + V LL+ GAD +
Sbjct: 15 KRWIGSETDLEPPVVKRKKTKVKF--DDGAVFLAACSSGDTEEVLRLLERGADINYANVD 72
Query: 188 EETPLALATKPE----VRILLGGEPGVTINTAD 216
T L A + V+ L+ E G IN D
Sbjct: 73 GLTALHQACIDDNVDMVKFLV--ENGANINQPD 103
Score = 57.9 bits (141), Expect = 1e-09
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKS 182
L A+ G EA LV D+ A + G TA A + + K S
Sbjct: 236 LHAAAHWGKEEACRILVENLCDMEAV-NKVGQTAFDVADEDILGYLEELQKKQNLLHS 292
Score = 45.2 bits (108), Expect = 2e-05
Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 6/73 (8%)
Query: 147 INAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRIL 203
+ D G + + + + LA + EV L
Sbjct: 1 MKMA-DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRL 59
Query: 204 LGGEPGVTINTAD 216
L E G IN A+
Sbjct: 60 L--ERGADINYAN 70
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 81.4 bits (202), Expect = 2e-17
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L +A D + V +L+ G ++N Q + GWT LH A + ++DIV LL+HGAD L
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
TP LA + +++ L G +N D
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFL--SKGADVNECD 102
Score = 76.7 bits (190), Expect = 8e-16
Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A + + V L+ G D + NG T AA G ++ L GAD +
Sbjct: 43 LHNAVQMSREDIVELLLRHGADPVLR-KKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC 101
Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
T A ++ L + G +N
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLY--KRGANVNLRR 135
Score = 67.5 bits (166), Expect = 8e-13
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 12/102 (11%)
Query: 125 LREASCLGDFEAVCE----LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLL-KHGA 179
L A D V L+ G D+N + G T L A ++ +V LL +
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTPLILAVEKKHLGLVQRLLEQEHI 244
Query: 180 DKSLLTSKEETPLALATK---PE-VRILLGGEPGVTINTADL 217
+ + S +T L LA + + +L + G + + DL
Sbjct: 245 EINDTDSDGKTALLLAVELKLKKIAELLC--KRGASTDCGDL 284
Score = 65.2 bits (160), Expect = 5e-12
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 20/110 (18%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQ---------HDMNGWTALHWAAKRGQKDIVSYLL 175
EA+ G +A+ L +G ++N + G TAL AA++G +++ LL
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168
Query: 176 KH-GADKSLLTSKEETPLALAT--------KPEVRILLGGEPGVTINTAD 216
GAD + + L A + +LL + G +N
Sbjct: 169 DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL--DHGADVNVRG 216
Score = 50.5 bits (122), Expect = 3e-07
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK-EETPLALAT----KPEVRILLGG 206
+ L A + D+V LL+ GA+ + + TPL A + V +LL
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL-- 59
Query: 207 EPGVTINTAD 216
G
Sbjct: 60 RHGADPVLRK 69
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 78.7 bits (195), Expect = 2e-17
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L + LG + V L G D++ + G TALH AA + ++V L++ GAD +
Sbjct: 80 LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE 139
Query: 185 TSKEETPLALATK 197
+ T L LA +
Sbjct: 140 DERGLTALELARE 152
Score = 68.7 bits (169), Expect = 9e-14
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
A+ D +A+ + + D++A D NG TAL + A G V L + GAD
Sbjct: 48 WWTAARKADEQAL-SQLLEDRDVDAV-DENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 105
Query: 185 TSKE-ETPLALAT----KPEVRILLGGEPGVTINTAD 216
+ T L +A V L+ E G I D
Sbjct: 106 DMRGGLTALHMAAGYVRPEVVEALV--ELGADIEVED 140
Score = 66.0 bits (162), Expect = 6e-13
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L A+ E V LV G DI + D G TAL A + + ++ G
Sbjct: 114 LHMAAGYVRPEVVEALVELGADIEVE-DERGLTALELAREILKTTPKGNPMQFGRR 168
Score = 62.5 bits (153), Expect = 1e-11
Identities = 17/96 (17%), Positives = 28/96 (29%), Gaps = 11/96 (11%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
G + D+ + T AA++ + +S LL D +
Sbjct: 18 YLIEWKDGHSPSWVPSSYIAADVVS----EYETPWWTAARKADEQALSQLL-EDRDVDAV 72
Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
T L VR+L E G ++ D
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLLA--EAGADLDHRD 106
Score = 51.3 bits (124), Expect = 7e-08
Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 10/78 (12%)
Query: 143 KGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KP 198
I ++ G K G AD S+ ETP A +
Sbjct: 2 VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQ 58
Query: 199 EVRILLGGEPGVTINTAD 216
+ LL ++ D
Sbjct: 59 ALSQLLE---DRDVDAVD 73
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 80.3 bits (199), Expect = 2e-17
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L + LG + V L G D++ + G TALH AA + ++V L++ GAD +
Sbjct: 81 LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE 140
Query: 185 TSKEETPLALATK 197
+ T L LA +
Sbjct: 141 DERGLTALELARE 153
Score = 70.7 bits (174), Expect = 4e-14
Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ E V LV G DI + D G TAL A + + ++ G L
Sbjct: 115 LHMAAGYVRPEVVEALVELGADIEVE-DERGLTALELAREILKTTPKGNPMQFGRRIGL- 172
Query: 185 TSKEETPLALATKPE----VRILLGGEPGVTI 212
++ + E I+ G +
Sbjct: 173 --EKVINVLEGQVFEYAEVDEIVEKRGKGKDV 202
Score = 66.5 bits (163), Expect = 1e-12
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
A+ D +A+ + + D++A D NG TAL + A G V L + GAD
Sbjct: 49 WWTAARKADEQAL-SQLLEDRDVDAV-DENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 106
Query: 185 TSK-EETPLALATK---PE-VRILLGGEPGVTINTAD 216
+ T L +A PE V L+ E G I D
Sbjct: 107 DMRGGLTALHMAAGYVRPEVVEALV--ELGADIEVED 141
Score = 61.5 bits (150), Expect = 7e-11
Identities = 17/96 (17%), Positives = 28/96 (29%), Gaps = 11/96 (11%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
G + D+ + T AA++ + +S LL D +
Sbjct: 19 YLIEWKDGHSPSWVPSSYIAADVVS----EYETPWWTAARKADEQALSQLL-EDRDVDAV 73
Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
T L VR+L E G ++ D
Sbjct: 74 DENGRTALLFVAGLGSDKCVRLLA--EAGADLDHRD 107
Score = 49.9 bits (120), Expect = 4e-07
Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 10/74 (13%)
Query: 147 INAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KPEVRI 202
I ++ G K G AD + S+ ETP A + +
Sbjct: 7 IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQ 63
Query: 203 LLGGEPGVTINTAD 216
LL ++ D
Sbjct: 64 LL---EDRDVDAVD 74
Score = 43.4 bits (103), Expect = 6e-05
Identities = 8/77 (10%), Positives = 14/77 (18%), Gaps = 21/77 (27%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQH---------------------DMNGWTALHWAA 163
L A + + G I + G +
Sbjct: 148 LELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVR 207
Query: 164 KRGQKDIVSYLLKHGAD 180
+ D H A+
Sbjct: 208 WKDGGDCEWVKGVHVAE 224
Score = 35.3 bits (82), Expect = 0.031
Identities = 4/79 (5%), Positives = 20/79 (25%), Gaps = 3/79 (3%)
Query: 88 HGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDI 147
G + + ++ ++ +++ ++ + +
Sbjct: 166 FGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAED 225
Query: 148 NAQHDMNGWTALHWAAKRG 166
A+ + L +A
Sbjct: 226 VAK---DYEDGLEYAVAES 241
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 77.0 bits (191), Expect = 2e-17
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ G D+NA+ D NG T LH AA+ G ++V LL+ GAD +
Sbjct: 39 LHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 97
Query: 185 TSKEETPLALATK 197
TPL LA +
Sbjct: 98 DKNGRTPLHLAAR 110
Score = 73.9 bits (183), Expect = 3e-16
Identities = 38/96 (39%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ G D+NA+ D NG T LH AA+ G ++V LL+ GAD +
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
TPL LA + E V++LL E G +N D
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLL--EAGADVNAKD 98
Score = 68.5 bits (169), Expect = 2e-14
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
L A+ G E V L+ G D+NA+ D NG T LH AA+ G ++V LL+ GA
Sbjct: 72 LHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 60.8 bits (149), Expect = 1e-11
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KPEVRILLGGEPG 209
NG T LH AA+ G ++V LL+ GAD + TPL LA V++LL E G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL--EAG 58
Query: 210 VTINTAD 216
+N D
Sbjct: 59 ADVNAKD 65
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 80.2 bits (199), Expect = 3e-17
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A+ L + +L++ D+NA D G +ALHWAA D LLK+GA+K + ++
Sbjct: 131 AARLAVEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 189
Query: 188 EETPLALATK 197
EETPL LA +
Sbjct: 190 EETPLFLAAR 199
Score = 72.1 bits (178), Expect = 2e-14
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ + + +A L+ G + + Q + T L AA+ G + LL H A++ +
Sbjct: 161 LHWAAAVNNVDAAVVLLKNGANKDMQ-NNREETPLFLAAREGSYETAKVLLDHFANRDIT 219
Query: 185 TSKEETPLALATK 197
+ P +A +
Sbjct: 220 DHMDRLPRDIAQE 232
Score = 69.0 bits (170), Expect = 2e-13
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 137 VCE-LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
V + +G ++ Q D G TALH AA+ + D LL+ AD ++ + TPL A
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Query: 196 TK 197
Sbjct: 98 VS 99
Score = 66.7 bits (164), Expect = 1e-12
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA-DKSL 183
L A+ +A L+ D N Q D G T LH A + + L+++ A D
Sbjct: 61 LHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 184 LTSKEETPLALATK 197
TPL LA +
Sbjct: 120 RMHDGTTPLILAAR 133
Score = 63.6 bits (156), Expect = 1e-11
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L A+ G +E L+ + + D A +R DIV L
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDIT-DHMDRLPRDIAQERMHHDIVRLLDLEHHH 248
Score = 63.3 bits (155), Expect = 2e-11
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 125 LREASCLGDFEAVCELVSKG-IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
L A L+ D++A+ +G T L AA+ + ++ L+ AD +
Sbjct: 94 LHAAVSADAQGVFQILIRNRATDLDAR-MHDGTTPLILAARLAVEGMLEDLINSHADVNA 152
Query: 184 LTSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
+ ++ L A +LL + G + +
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLL--KNGANKDMQN 187
Score = 54.4 bits (132), Expect = 2e-08
Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 21/90 (23%)
Query: 145 IDINAQHDMNGWTALHWAAKRGQ-------------KDIVSYLLKHGADKSLLTSKE-ET 190
+D+N + +G+T L A+ G ++S + GA T + ET
Sbjct: 1 MDVNVR-GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 59
Query: 191 PLALAT----KPEVRILLGGEPGVTINTAD 216
L LA + LL E N D
Sbjct: 60 ALHLAARYSRSDAAKRLL--EASADANIQD 87
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 75.9 bits (188), Expect = 3e-17
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ G D+NA+ D NG T LH AA+ G ++V LL+ GAD +
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 185 TSKEETPLALATK 197
TPL LA +
Sbjct: 65 DKNGRTPLHLAAR 77
Score = 68.2 bits (168), Expect = 1e-14
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
L A+ G E V L+ G D+NA+ D NG T LH AA+ G ++V LL+ GA
Sbjct: 39 LHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 59.7 bits (146), Expect = 1e-11
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK---PE-VRILLGGEPG 209
NG T LH AA+ G ++V LL+ GAD + TPL LA + E V++LL E G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL--EAG 58
Query: 210 VTINTAD 216
+N D
Sbjct: 59 ADVNAKD 65
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 81.8 bits (203), Expect = 6e-17
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ +G V L+ + N G T LH AA+ G + V LL+ A ++ +
Sbjct: 84 LHCAARIGHTNMVKLLLENNANPNLA-TTAGHTPLHIAAREGHVETVLALLEKEASQACM 142
Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
T K TPL +A K +LL E N A
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLL--ERDAHPNAAG 176
Score = 80.6 bits (200), Expect = 2e-16
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L AS +G V L+ +G N ++ T LH AA+ G ++ YLL++ A +
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVS-NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 76
Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
++TPL A V++LL E N A
Sbjct: 77 AKDDQTPLHCAARIGHTNMVKLLL--ENNANPNLAT 110
Score = 80.2 bits (199), Expect = 2e-16
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E L+ +NA+ + T LH AA+ G ++V LL++ A+ +L
Sbjct: 51 LHMAARAGHTEVAKYLLQNKAKVNAK-AKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 109
Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
T+ TPL +A + E V LL E +
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALL--EKEASQACMT 143
Score = 79.8 bits (198), Expect = 2e-16
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A + + V L+ +G ++ NG+T LH AAK+ Q ++ LL++G +
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGSPHSP-AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241
Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
+ + TPL LA + E V +LL N +
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLL--SKQANGNLGN 275
Score = 79.5 bits (197), Expect = 3e-16
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ E L+ G NA+ + G T LH AA+ G ++V+ LL A+ +L
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGSANAE-SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 274
Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
TPL L P +L+ + GV ++
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLI--KHGVMVDATT 308
Score = 77.1 bits (191), Expect = 2e-15
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L AS G+ + V L+ D+NA+ G++ LH AA++G DIV+ LLK+GA + +
Sbjct: 315 LHVASHYGNIKLVKFLLQHQADVNAK-TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373
Query: 185 TSKEETPLALATK---PEVRILL--GGEPGVTINTAD 216
+S TPLA+A + V +L + + +D
Sbjct: 374 SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 410
Score = 76.8 bits (190), Expect = 2e-15
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L + G L+ G+ ++A G+T LH A+ G +V +LL+H AD +
Sbjct: 282 LHLVAQEGHVPVADVLIKHGVMVDAT-TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 340
Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
T +PL A + + V +LL + G + N
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLL--KNGASPNEVS 374
Score = 74.8 bits (185), Expect = 1e-14
Identities = 29/96 (30%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G L+ + NA NG T LH A DIV LL G
Sbjct: 150 LHVAAKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 208
Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
TPL +A K E R LL + G + N
Sbjct: 209 AWNGYTPLHIAAKQNQVEVARSLL--QYGGSANAES 242
Score = 74.8 bits (185), Expect = 1e-14
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ K G+T LH AAK G+ + LL+ A +
Sbjct: 117 LHIAAREGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA 175
Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
TPL +A + V++LL G + ++
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLL--PRGGSPHSPA 209
Score = 74.5 bits (184), Expect = 1e-14
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+SK + N + +G T LH A+ G + L+KHG
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT 307
Query: 185 TSKEETPLALATK 197
T TPL +A+
Sbjct: 308 TRMGYTPLHVASH 320
Score = 72.5 bits (179), Expect = 5e-14
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 142 SKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK---P 198
S GI +G T LH A+ G IV LL+ GA ++ K ETPL +A +
Sbjct: 2 SPGISGGGG-GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT 60
Query: 199 E-VRILLGGEPGVTINTAD 216
E + LL + +N
Sbjct: 61 EVAKYLL--QNKAKVNAKA 77
Score = 57.9 bits (141), Expect = 3e-09
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L +A+ G + V L+ G N +G T L A + G + L + S +
Sbjct: 348 LHQAAQQGHTDIVTLLLKNGASPNEV-SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFV 406
Query: 185 TSKEE 189
++
Sbjct: 407 LVSDK 411
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 78.6 bits (195), Expect = 6e-17
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 9/100 (9%)
Query: 125 LREASCLGDFEAVCE-LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD--- 180
L +A +F V E L SK + + D +G LHW+ +I S+LL +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 181 KSLLTSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
TP +A E V+ L +N
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT 104
Score = 72.5 bits (179), Expect = 8e-15
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 125 LREASCLGDFEAVCELVSKGI-DINAQHDMNGWTALHWAAKRGQKDIVSYLL-KHGADKS 182
L A+ +G + + L G +N Q D GWT L A G D L+ K+GA+
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQ-DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Query: 183 LLTSKEETPLALATKPEVRILL 204
L+ +K +A +V+
Sbjct: 203 LVDNKGAKAEDVALNEQVKKFF 224
Score = 67.1 bits (165), Expect = 7e-13
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 128 ASCLGDFEAVCELVSK--GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLT 185
A +G+ E V L + D+N G T LH A + ++ +L+++GA +
Sbjct: 79 ACSVGNLEVVKSLYDRPLKPDLNKI-TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD 137
Query: 186 SKEETPLALA 195
+ PL A
Sbjct: 138 KFNQIPLHRA 147
Score = 66.7 bits (164), Expect = 8e-13
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHG-ADKSLLTS 186
A FE L+ G + + D LH AA G ++ L G + +
Sbjct: 114 AVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172
Query: 187 KEETPLALATK---PEVRILLGGEPGVTINTAD 216
+ TPL A + +LL + G + D
Sbjct: 173 QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205
Score = 49.0 bits (118), Expect = 7e-07
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 125 LREASCLGDFEAVCELVSK-GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
L A G +A LV K G + + D G A A + + + L +
Sbjct: 178 LFHALAEGHGDAAVLLVEKYGAEYDLV-DNKGAKAEDVAL---NEQVKKFFLNN 227
Score = 44.7 bits (107), Expect = 2e-05
Identities = 7/44 (15%), Positives = 10/44 (22%), Gaps = 1/44 (2%)
Query: 155 GWTALHWAAKRGQKDIV-SYLLKHGADKSLLTSKEETPLALATK 197
LH A + V L + PL +
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS 45
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 80.6 bits (200), Expect = 7e-17
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A G +E L+ G +NA D+ +T LH AA + + ++ S LL HGAD +L+
Sbjct: 95 LHNACSYGHYEVTELLLKHGACVNAM-DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV 153
Query: 185 TSKEETPLALATKPE----VRILLGG 206
++ + +A PE + G
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKG 179
Score = 79.5 bits (197), Expect = 2e-16
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ + + L G +NA D G TALH AA G LL +G+D S++
Sbjct: 251 LHVAAERAHNDVMEVLHKHGAKMNAL-DSLGQTALHRAALAGHLQTCRLLLSYGSDPSII 309
Query: 185 TSKEETPLALATKPEVRILLGGEPGVTINTAD 216
+ + T + + V+ +L + T+D
Sbjct: 310 SLQGFTAAQMGNE-AVQQIL--SESTPMRTSD 338
Score = 78.3 bits (194), Expect = 4e-16
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 125 LREASCLGDFEAVCE-LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
L EA+ G+ E + L ++ +A D T LH AA + IV LL+HGAD
Sbjct: 28 LLEAARSGNEEKLMALLTPLNVNCHAS-DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86
Query: 184 LTSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
PL A E +LL + G +N D
Sbjct: 87 KDKGGLVPLHNACSYGHYEVTELLL--KHGACVNAMD 121
Score = 76.4 bits (189), Expect = 2e-15
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A+ V L+ G D++A+ D G LH A G ++ LLKHGA + +
Sbjct: 65 AAGYNRVRIVQLLLQHGADVHAK-DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLW 123
Query: 188 EETPLALATK 197
+ TPL A
Sbjct: 124 QFTPLHEAAS 133
Score = 71.8 bits (177), Expect = 6e-14
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT--- 196
L+ KG ++N + + + T LH AA+R D++ L KHGA + L S +T L A
Sbjct: 233 LLRKGANVNEK-NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG 291
Query: 197 -KPEVRILLGGEPGVTINTAD 216
R+LL G +
Sbjct: 292 HLQTCRLLL--SYGSDPSIIS 310
Score = 69.4 bits (171), Expect = 4e-13
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 116 DRVKYLEEQ--LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRG---QKDI 170
+R+ Y + L +A+ D V + ++ I Q + TALH A +K +
Sbjct: 171 ERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQ-PQSHETALHCAVASLHPKRKQV 229
Query: 171 VSYLLKHGADKSLLTSKEETPLALATK 197
LL+ GA+ + TPL +A +
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVAAE 256
Score = 61.4 bits (150), Expect = 2e-10
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L EA+ E L+S G D + +G +A+ A ++ ++Y K +
Sbjct: 128 LHEAASKNRVEVCSLLLSHGADPTLV-NCHGKSAVDMAPTPELRERLTYEFKGHSL 182
Score = 58.3 bits (142), Expect = 2e-09
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 139 ELVSKGIDINAQHDMNGWTALHWAAKRG-QKDIVSYLLKHGADKSLLTSKEETPLALATK 197
+L + L AA+ G ++ +++ L + ++ TPL LA
Sbjct: 9 DLADPSAKAVLTGE-YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAG 67
Score = 32.9 bits (76), Expect = 0.21
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 135 EAVCELVSKGIDINAQHDMNGWTALHWAAKRG 166
EAV +++S+ + + L A+K G
Sbjct: 322 EAVQQILSESTPMRTS---DVDYRLLEASKAG 350
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 79.0 bits (196), Expect = 7e-17
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 20/119 (16%)
Query: 116 DRVKYLEEQ--------------LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHW 161
+R + L E L A+ + V +SKG ++ T LHW
Sbjct: 23 ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW 82
Query: 162 AAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
A ++G +V L+K+GAD SL+ + + + LA V L+ G ++ D
Sbjct: 83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI--AKGQDVDMMD 139
Score = 76.7 bits (190), Expect = 4e-16
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
+ +A+ G +E ELV G D+ D T LHWAA + D+V Y + GA L
Sbjct: 13 IVKATQYGIYERCRELVEAGYDVRQP-DKENVTLLHWAAINNRIDLVKYYISKGAIVDQL 71
Query: 185 TSKE-ETPLALAT----KPEVRILLGGEPGVTINTAD 216
TPL AT V L+ + G + D
Sbjct: 72 GGDLNSTPLHWATRQGHLSMVVQLM--KYGADPSLID 106
Score = 75.9 bits (188), Expect = 6e-16
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 135 EAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLAL 194
+ L++ + +N + TALHWA G ++S LL+ GA+ K E+ L L
Sbjct: 157 DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL 216
Query: 195 ATK 197
A +
Sbjct: 217 AKQ 219
Score = 74.0 bits (183), Expect = 3e-15
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G V +L+ G D + D G + +H AA+ G IV+YL+ G D ++
Sbjct: 80 LHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138
Query: 185 TSKEETPLALAT----KPE-VRILLGGEPGVTINTAD 216
TPL A + R+LL V++N D
Sbjct: 139 DQNGMTPLMWAAYRTHSVDPTRLLL--TFNVSVNLGD 173
Score = 69.8 bits (172), Expect = 1e-13
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
A G+ + L+ G +++AQ ++ G +AL A +R ++++L + K
Sbjct: 184 AVLAGNTTVISLLLEAGANVDAQ-NIKGESALDLAKQRKNVWMINHLQEARQAK 236
Score = 59.0 bits (144), Expect = 4e-10
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 7/74 (9%)
Query: 147 INAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KPEVRI 202
+ D + A + G + L++ G D + T L A V+
Sbjct: 2 MTHI-DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 203 LLGGEPGVTINTAD 216
+ G ++
Sbjct: 61 YI--SKGAIVDQLG 72
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 75.1 bits (186), Expect = 8e-17
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A+ G E V +L+SKG D+NA+ +G T LH AAK G +IV LL GAD + +
Sbjct: 16 AAKNGHAEEVKKLLSKGADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKD 74
Query: 188 EETPLALAT----KPEVRILLGGEPGVTINTAD 216
TP LA V++L G +N
Sbjct: 75 GNTPEHLAKKNGHHEIVKLLD--AKGADVNARS 105
Score = 72.4 bits (179), Expect = 9e-16
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L++KG D+NA+ +G T H A K G +IV L GAD +
Sbjct: 46 LHLAAKNGHAEIVKLLLAKGADVNAR-SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Query: 185 TSKEETPL 192
+
Sbjct: 105 SWGSSHHH 112
Score = 61.6 bits (151), Expect = 5e-12
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 144 GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KPE 199
G +G T LH AAK G + V LL GAD + + TPL LA
Sbjct: 1 GHMWG---SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEI 57
Query: 200 VRILLGGEPGVTINTAD 216
V++LL G +N
Sbjct: 58 VKLLL--AKGADVNARS 72
Score = 36.6 bits (86), Expect = 0.003
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALH 160
A G E V L +KG D+NA+ H
Sbjct: 79 EHLAKKNGHHEIVKLLDAKGADVNAR-SWGSSHHHH 113
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 76.6 bits (190), Expect = 1e-16
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
LR A+ G E V L+ G D+NA DM G T LH AA G +IV LLK+GAD +
Sbjct: 84 LRLAALFGHLEIVEVLLKNGADVNAN-DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ 142
Query: 185 TSKEETPLALATK 197
+T ++
Sbjct: 143 DKFGKTAFDISID 155
Score = 74.3 bits (184), Expect = 6e-16
Identities = 36/96 (37%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ G D+NA D G T L AA G +IV LLK+GAD +
Sbjct: 51 LHLAAFNGHLEIVEVLLKNGADVNAV-DHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN 109
Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
+ TPL LA V +LL + G +N D
Sbjct: 110 DMEGHTPLHLAAMFGHLEIVEVLL--KNGADVNAQD 143
Score = 73.6 bits (182), Expect = 1e-15
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L EA+ G + V L++ G D+NA+ D +GWT LH AA G +IV LLK+GAD + +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76
Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
TPL LA V +LL + G +N D
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLL--KNGADVNAND 110
Score = 67.8 bits (167), Expect = 1e-13
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 143 KGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
+G + H + L AA+ G+ D V L+ +GAD + + TPL LA
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAF 56
Score = 60.8 bits (149), Expect = 3e-11
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
L A+ G E V L+ G D+NAQ D G TA + G +D+ L K
Sbjct: 117 LHLAAMFGHLEIVEVLLKNGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQKL 168
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 75.5 bits (187), Expect = 2e-16
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G V L+ G D+NA+ DM TALHWA + +++V L+K+GAD
Sbjct: 71 LHMAASEGHANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129
Query: 185 TSKEETPLALATK 197
+ +T ++
Sbjct: 130 SKFCKTAFDISID 142
Score = 70.9 bits (175), Expect = 6e-15
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A+ G F L+ G+ +A+ T LH AA G +IV LLKHGAD +
Sbjct: 41 AAQYGHFSTTEVLLRAGVSRDAR-TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML 99
Query: 188 EETPLALATK 197
+ T L AT+
Sbjct: 100 KMTALHWATE 109
Score = 70.9 bits (175), Expect = 8e-15
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L EA+ G + V L++ G D G + LH AA+ G LL+ G +
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 185 TSKEETPLALATK 197
T + TPL +A
Sbjct: 64 TKVDRTPLHMAAS 76
Score = 53.5 bits (130), Expect = 7e-09
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYL 174
L A+ E V L+ G D++ Q TA + G +D+ L
Sbjct: 104 LHWATEHNHQEVVELLIKYGADVHTQ-SKFCKTAFDISIDNGNEDLAEIL 152
Score = 50.8 bits (123), Expect = 7e-08
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGAD--KSLLTSKEETPLALATK 197
+ L AA+ GQ D V L+ +GA +PL LA +
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTT---DWLGTSPLHLAAQ 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 76.8 bits (190), Expect = 3e-16
Identities = 31/70 (44%), Positives = 37/70 (52%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
AS G V LVS G D+NAQ NG TALH A D+VS LLK GAD + +T +
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183
Query: 188 EETPLALATK 197
+P L
Sbjct: 184 GYSPYQLTWG 193
Score = 75.7 bits (187), Expect = 8e-16
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A L + + V L+ G D+N G++ R I L + + + +
Sbjct: 158 AVDLQNPDLVSLLLKCGADVNRV-TYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPE 216
Query: 188 EETPLALAT 196
E + T
Sbjct: 217 SEDEESYDT 225
Score = 71.4 bits (176), Expect = 2e-14
Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 13/99 (13%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A E L+ G D + D G T LH A ++G V L + L +
Sbjct: 52 AVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL 110
Query: 188 EE------TPLALAT----KPEVRILLGGEPGVTINTAD 216
+ T L LA+ V +L+ G +N +
Sbjct: 111 KATNYNGHTCLHLASIHGYLGIVELLV--SLGADVNAQE 147
Score = 71.0 bits (175), Expect = 3e-14
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 134 FEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLA 193
E + ++ +N Q + T LH A Q +I LL G D L + TPL
Sbjct: 25 MEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH 83
Query: 194 LATK 197
LA +
Sbjct: 84 LACE 87
Score = 49.5 bits (119), Expect = 6e-07
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 152 DMNGWTALHWAAKRGQK----DIVSYLLKHGADKSLLTSKEETPLALATK---PE-VRIL 203
+G + LH A +K +++ + A + + ++TPL LA PE L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 204 LGGEPGVTINTAD 216
L G D
Sbjct: 65 L--GAGCDPELRD 75
Score = 34.1 bits (79), Expect = 0.066
Identities = 1/47 (2%), Positives = 8/47 (17%), Gaps = 1/47 (2%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIV 171
+ +L ++ + + +
Sbjct: 188 YQLTWGRPSTRIQQQLGQLTLENLQM-LPESEDEESYDTESEFTEFT 233
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 74.7 bits (185), Expect = 4e-16
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A G +E LV G +N D+ +T LH AA +G+ +I LL+HGAD +
Sbjct: 79 LHNACSYGHYEVAELLVKHGAVVNVA-DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 137
Query: 185 TSKEETPLALATK 197
TPL L
Sbjct: 138 NRDGNTPLDLVKD 150
Score = 69.7 bits (172), Expect = 3e-14
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A+ V L+ G D++A+ D G LH A G ++ L+KHGA ++
Sbjct: 49 AAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLW 107
Query: 188 EETPLALA 195
+ TPL A
Sbjct: 108 KFTPLHEA 115
Score = 67.0 bits (165), Expect = 2e-13
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 125 LREASCLGDFEAVCELVSK-GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
L EA+ GD E V +L + ++ + T LH+AA + +V YLL+HGAD
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Query: 184 LTSKEETPLALATK 197
PL A
Sbjct: 71 KDKGGLVPLHNACS 84
Score = 58.2 bits (142), Expect = 2e-10
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
L EA+ G +E L+ G D + + +G T L G DI L A
Sbjct: 112 LHEAAAKGKYEICKLLLQHGADPTKK-NRDGNTPLDLVKD-GDTDIQDLLRGDAA 164
Score = 52.0 bits (126), Expect = 3e-08
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 144 GIDINAQHDMNGWTALHWAAKRGQKDIVSYLL-KHGADKSLLTSKEETPLALATK 197
G N+ L AAK G + V L + + ++ TPL A
Sbjct: 1 GAMGNS----EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAG 51
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 76.7 bits (190), Expect = 4e-16
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A V L+ G ++NAQ +G +ALH A+ RG +V L++ GAD SL
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQ-MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCH 215
Query: 188 EETPLALATK 197
+TPL +A
Sbjct: 216 NDTPLMVARS 225
Score = 74.4 bits (184), Expect = 3e-15
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 11/99 (11%)
Query: 128 ASCLGDFEAVCELVS----KGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
A G+ AV LV+ G +++ + T LH A +V L+ GA
Sbjct: 16 AVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTLPSVVRLLVTAGASPMA 74
Query: 184 LTSKEETPLALATK---PE-VRILL--GGEPGVTINTAD 216
L +T LA + P +R LL + + +
Sbjct: 75 LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 113
Score = 74.0 bits (183), Expect = 3e-15
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A E V L+ +G DI+A +G + L A + +V LL+HGA+ +
Sbjct: 120 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ 179
Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
+ L A+ P VR L+ G + +
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLV--RSGADSSLKN 213
Score = 67.9 bits (167), Expect = 4e-13
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 11/100 (11%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A V LV+ G A D +G TA H A + + LL A +L
Sbjct: 50 LHLAVITTLPSVVRLLVTAGASPMAL-DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 108
Query: 185 ----TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
T L +A + V++LL E G I+ D
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLL--ERGADIDAVD 146
Score = 67.1 bits (165), Expect = 8e-13
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
L AS G V LV G D + + + + T L A R DI+ A
Sbjct: 187 LHSASGRGLLPLVRTLVRSGADSSLK-NCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 62.5 bits (153), Expect = 3e-11
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 128 ASCLGDFEAVCELVSKG----IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
A + L+ +D+ A+ + +G TALH A ++ V LL+ GAD
Sbjct: 86 ACEHRSPTCLRALLDSAAPGTLDLEAR-NYDGLTALHVAVNTECQETVQLLLERGADIDA 144
Query: 184 LTSKE-ETPLALAT----KPEVRILLGGEPGVTINTAD 216
+ K +PL A V++LL + G +N
Sbjct: 145 VDIKSGRSPLIHAVENNSLSMVQLLL--QHGANVNAQM 180
Score = 52.8 bits (128), Expect = 4e-08
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 147 INAQHDMNGWTALHWAAKRGQKDIV----SYLLKHGADKSLLTSKEETPLALATK---PE 199
D +G T LH A +G V + + G + + + +TPL LA P
Sbjct: 2 ATRA-DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 200 -VRILLGGEPGVTINTAD 216
VR+L+ G + D
Sbjct: 61 VVRLLV--TAGASPMALD 76
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 76.7 bits (190), Expect = 5e-16
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
+ EA+ G ++ L+S+G +N + + LH A G V LLKHGA + +
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNII-TADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 65
Query: 185 TSKEETPLALA 195
T+ TPL A
Sbjct: 66 TADWHTPLFNA 76
Score = 74.8 bits (185), Expect = 2e-15
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A G ++ V L+ G + + D + +H AA+RG + V+ L+ +G +
Sbjct: 73 LFNACVSGSWDCVNLLLQHGASVQPESD--LASPIHEAARRGHVECVNSLIAYGGNIDHK 130
Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
S TPL LA + V+ LL E G +N
Sbjct: 131 ISHLGTPLYLACENQQRACVKKLL--ESGADVNQGK 164
Score = 74.4 bits (184), Expect = 3e-15
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L EA G V L+ G +N + T L A G D V+ LL+HGA
Sbjct: 40 LHEACLGGHLSCVKILLKHGAQVNGV-TADWHTPLFNACVSGSWDCVNLLLQHGASVQ-P 97
Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
S +P+ A + E V L+ G I+
Sbjct: 98 ESDLASPIHEAARRGHVECVNSLI--AYGGNIDHKI 131
Score = 72.9 bits (180), Expect = 1e-14
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A V +L+ G D+N + LH A+ +++ L+ GAD
Sbjct: 138 LYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVARTASEELACLLMDFGADTQAK 195
Query: 185 TSKEETPLALATK--PEVRILLGGEPGVTINTADL 217
++ + P+ L P ++ L E + L
Sbjct: 196 NAEGKRPVELVPPESPLAQLFL--EREGPPSLMQL 228
Score = 69.8 bits (172), Expect = 1e-13
Identities = 10/70 (14%), Positives = 18/70 (25%), Gaps = 3/70 (4%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
+ E C L+ G D A+ + G + + L+ SL+
Sbjct: 173 VARTASEELACLLMDFGADTQAK-NAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLC 229
Query: 188 EETPLALATK 197
Sbjct: 230 RLRIRKCFGI 239
Score = 61.7 bits (151), Expect = 6e-11
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 153 MNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK---PE-VRILLGGEP 208
M+ W+ +H AA G + + L+ G +++T+ +PL A V+ILL +
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL--KH 58
Query: 209 GVTINTAD 216
G +N
Sbjct: 59 GAQVNGVT 66
Score = 61.3 bits (150), Expect = 9e-11
Identities = 4/50 (8%), Positives = 11/50 (22%), Gaps = 1/50 (2%)
Query: 135 EAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
+ + + + + I +L + LL
Sbjct: 211 PLAQLFLEREGPPSLM-QLCRLRIRKCFGIQQHHKITKLVLPEDLKQFLL 259
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 75.9 bits (188), Expect = 6e-16
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A+ L + +L++ D+NA D G +ALHWAA D LLK+GA+K + ++
Sbjct: 99 AARLAVEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 157
Query: 188 EETPLALATK 197
EETPL LA +
Sbjct: 158 EETPLFLAAR 167
Score = 74.4 bits (184), Expect = 2e-15
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A+ + + +A L+ G + + Q + T L AA+ G + LL H A++ +
Sbjct: 132 AAAVNNVDAAVVLLKNGANKDMQ-NNREETPLFLAAREGSYETAKVLLDHFANRDITDHM 190
Query: 188 EETPLALAT----KPEVRILLGGEPGVTINTAD 216
+ P +A VR+L E + +
Sbjct: 191 DRLPRDIAQERMHHDIVRLLD--EYNLVRSPQL 221
Score = 72.4 bits (179), Expect = 9e-15
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 132 GDFEAVCE-LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEET 190
GD AV + +G ++ Q D G TALH AA+ + D LL+ AD ++ + T
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 191 PLALATK 197
PL A
Sbjct: 61 PLHAAVS 67
Score = 69.4 bits (171), Expect = 8e-14
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA-DKSL 183
L A+ +A L+ D N Q D G T LH A + + L+++ A D
Sbjct: 29 LHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 87
Query: 184 LTSKEETPLALATK 197
TPL LA +
Sbjct: 88 RMHDGTTPLILAAR 101
Score = 68.2 bits (168), Expect = 3e-13
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKS 182
L A+ G +E L+ + + D A +R DIV L ++ +S
Sbjct: 162 LFLAAREGSYETAKVLLDHFANRDIT-DHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218
Score = 64.0 bits (157), Expect = 7e-12
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 125 LREASCLGDFEAVCELVSKG-IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
L A L+ D++A+ +G T L AA+ + ++ L+ AD +
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDAR-MHDGTTPLILAARLAVEGMLEDLINSHADVNA 120
Query: 184 LTSKEETPLALATK 197
+ ++ L A
Sbjct: 121 VDDLGKSALHWAAA 134
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 75.7 bits (187), Expect = 6e-16
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 125 LREASCLGDFEAVCELVSK-GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
L A G + V L ++ I++N Q + G TALH AA +G DIV LL GA L
Sbjct: 110 LYWACHGGHKDIVEMLFTQPNIELNQQ-NKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168
Query: 184 LTSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
+++ +AT ++ G ++
Sbjct: 169 RNIEKKLAFDMATNAACASLLKKKQG--TDAVRTLSN 203
Score = 71.9 bits (177), Expect = 1e-14
Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G + V L++KG + + ++ A A ++ A ++L
Sbjct: 144 LHAAAWKGYADIVQLLLAKGARTDLR-NIEKKLAFDMATNAACASLLKKKQGTDAVRTLS 202
Query: 185 TSKEETPLALA 195
+++ +
Sbjct: 203 NAEDYLDDEDS 213
Score = 66.5 bits (163), Expect = 9e-13
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 138 CELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT- 196
+ + Q + LH AAKRG + L + + L T L A
Sbjct: 57 RTGLIPSNYVAEQ-AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACH 115
Query: 197 ---KPEVRILLGGEPGVTINTAD 216
K V +L +P + +N +
Sbjct: 116 GGHKDIVEMLF-TQPNIELNQQN 137
Score = 58.0 bits (141), Expect = 8e-10
Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 12/96 (12%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
+ A + EL + DI T +G+ ++ +S
Sbjct: 16 VFRALYTFEPRTPDELYIEEGDIIYI-TDMSDTNWWKGTSKGRTGLIPSNYVAEQAES-- 72
Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
+ PL A +R L + V +N D
Sbjct: 73 ---IDNPLHEAAKRGNLSWLRECL--DNRVGVNGLD 103
Score = 52.2 bits (126), Expect = 6e-08
Identities = 7/44 (15%), Positives = 11/44 (25%)
Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
G + A + L D +T +T T
Sbjct: 11 PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTS 54
Score = 34.1 bits (79), Expect = 0.054
Identities = 1/39 (2%), Positives = 7/39 (17%), Gaps = 1/39 (2%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRG 166
A+ + + + + +
Sbjct: 180 ATNAACASLLKKKQGTDAVRTLS-NAEDYLDDEDSDLEH 217
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 74.4 bits (184), Expect = 6e-16
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G + V +L+ DINA + +G LH+A GQ + L+ +GA S+
Sbjct: 76 LHLAASHGHRDIVQKLLQYKADINAV-NEHGNVPLHYACFWGQDQVAEDLVANGALVSIC 134
Query: 185 TSKEETPLALATK 197
E P+ A
Sbjct: 135 NKYGEMPVDKAKA 147
Score = 74.4 bits (184), Expect = 7e-16
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 125 LREASCLGDFEAVCELVSKG-IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
+ G+ AV + D+N D +G++ LHWA + G+ +V L+ GA ++
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGRSAVVEMLIMRGARINV 67
Query: 184 LTSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
+ ++TPL LA + V+ LL + IN +
Sbjct: 68 MNRGDDTPLHLAASHGHRDIVQKLL--QYKADINAVN 102
Score = 49.4 bits (119), Expect = 4e-07
Identities = 7/45 (15%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGA-DKSLLTSKEETPLALATK 197
+ + G V L + D + +PL A +
Sbjct: 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACR 48
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 75.9 bits (188), Expect = 7e-16
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G + L++ D++A +++G + LH AA+ + D V L +D +L
Sbjct: 148 LHWAAFSGCVDIAEILLAAKCDLHAV-NIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK 206
Query: 185 TSKEETPLALATK 197
+ ETPL A+
Sbjct: 207 NKEGETPLQCASL 219
Score = 75.5 bits (187), Expect = 1e-15
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G + LV G +I+ + T L AA+ + V YL+K GA
Sbjct: 15 LHAAAEAGHVDICHMLVQAGANIDTC-SEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK 73
Query: 185 TSKEETPLALATK 197
++ T L LA K
Sbjct: 74 DAEGSTCLHLAAK 86
Score = 73.2 bits (181), Expect = 5e-15
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
+ A+ + V L+SKG DIN + D LHWAA G DI LL D +
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIAEILLAAKCDLHAV 173
Query: 185 TSKEETPLALATK 197
++PL +A +
Sbjct: 174 NIHGDSPLHIAAR 186
Score = 70.9 bits (175), Expect = 3e-14
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA-DKSL 183
L EA+ EAV L+ G ++ + D G T LH AAK+G ++V YLL +G D +
Sbjct: 48 LMEAAENNHLEAVKYLIKAGALVDPK-DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC 106
Query: 184 LTSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
TP+ AT V++LL G IN D
Sbjct: 107 QDDGGWTPMIWATEYKHVDLVKLLL--SKGSDINIRD 141
Score = 70.5 bits (174), Expect = 4e-14
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 125 LREASCLGDFEAVCELVSKG-IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
L A+ G +E V L+S G +D+N Q D GWT + WA + D+V LL G+D ++
Sbjct: 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQ-DDGGWTPMIWATEYKHVDLVKLLLSKGSDINI 139
Query: 184 LTSKEETPLALATK 197
++E L A
Sbjct: 140 RDNEENICLHWAAF 153
Score = 65.1 bits (160), Expect = 3e-12
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L A+ ++ V +S+ D+ + + G T L A+ Q + K D
Sbjct: 181 LHIAARENRYDCVVLFLSRDSDVTLK-NKEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 64.7 bits (159), Expect = 4e-12
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 145 IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
++ + N + LH AA+ G DI L++ GA+ + + TPL A +
Sbjct: 2 MNFKME-HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAE 53
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 75.8 bits (187), Expect = 7e-16
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L +A+ G+ E V + V + D + + G TALH A IV +L+ GA+ +
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDPSQP-NEEGITALHNAICGANYSIVDFLITAGANVNSP 83
Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
S TPL A L+ + G I
Sbjct: 84 DSHGWTPLHCAASCNDTVICMALV--QHGAAIFATT 117
Score = 72.7 bits (179), Expect = 9e-15
Identities = 29/140 (20%), Positives = 43/140 (30%), Gaps = 24/140 (17%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAA--KRGQKDIVSYLLKHGADKS 182
L A+ D LV G I A +G TA + G D +YL
Sbjct: 91 LHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMG 150
Query: 183 LLTSKEETPLALATK---PEVRILLGGEPGVTINTAD---------------LPIVP-NY 223
L+ S L + E+ G VT+ D VP NY
Sbjct: 151 LMNSGAVYALWDYSAEFGDELSFREGE--SVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208
Query: 224 IKNEP-LDPRVNDYQVSNQN 242
P + P+ + + + +
Sbjct: 209 FGLFPRVKPQRSKVKHHHHH 228
Score = 63.4 bits (155), Expect = 1e-11
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 8/83 (9%)
Query: 140 LVSKGIDINA--QHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT- 196
++ K + +N L AA G+ ++V +K D S + T L A
Sbjct: 4 VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAIC 63
Query: 197 ---KPEVRILLGGEPGVTINTAD 216
V L+ G +N+ D
Sbjct: 64 GANYSIVDFLI--TAGANVNSPD 84
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 75.3 bits (186), Expect = 1e-15
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L ++S G+F+ V ++ + D + + G TALH A G +IV +L++ G + +
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLP-NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 99
Query: 185 TSKEETPLALA 195
S TPL A
Sbjct: 100 DSDGWTPLHCA 110
Score = 74.6 bits (184), Expect = 2e-15
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A C G E V LV G+++NA D +GWT LH AA + +L++ GA +
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAA-DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132
Query: 185 TSKEE---TPLALATK 197
T + +
Sbjct: 133 TYSDMQTAADKCEEME 148
Score = 73.0 bits (180), Expect = 6e-15
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L + E ++ G+ + + L ++ G+ D+V ++ D SL
Sbjct: 9 LPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP 66
Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
+ T L A V+ L+ + GV +N AD
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLV--QFGVNVNAAD 100
Score = 68.4 bits (168), Expect = 3e-13
Identities = 10/72 (13%), Positives = 18/72 (25%), Gaps = 2/72 (2%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQ--HDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLT 185
A+ + + LV G + A DM + G +L ++
Sbjct: 110 AASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN 169
Query: 186 SKEETPLALATK 197
L
Sbjct: 170 KGVIYALWDYEP 181
Score = 60.7 bits (148), Expect = 9e-11
Identities = 7/69 (10%), Positives = 20/69 (28%), Gaps = 7/69 (10%)
Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KPEVRILLGGE 207
++ G +L + + S + HG L ++ V+ ++
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRII--Y 58
Query: 208 PGVTINTAD 216
+ +
Sbjct: 59 EVDDPSLPN 67
Score = 44.5 bits (106), Expect = 2e-05
Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 6/73 (8%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
E G + L + + AL + ++ +K G +++
Sbjct: 143 KCEEMEEGYTQCSQFLYGVQEKMGIMNK-GVIYALWDYEPQNDDEL---PMKEGDCMTII 198
Query: 185 TSK--EETPLALA 195
+ +E A
Sbjct: 199 HREDEDEIEWWWA 211
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 73.2 bits (181), Expect = 1e-15
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
G EL+ +G N Q D +G + +H AA+ G D + L++HGAD ++
Sbjct: 42 VMMFGSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT 100
Query: 188 EETPLALA 195
P+ LA
Sbjct: 101 GALPIHLA 108
Score = 71.7 bits (177), Expect = 4e-15
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 125 LREASCLGDFEAVCELV-SKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
L A+ GD + V L+ + + +A + G TAL G I LLK GA ++
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQVMM-FGSTAIALELLKQGASPNV 63
Query: 184 LTSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
+ +P+ A +++L+ E G +N D
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLV--EHGADVNVPD 98
Score = 68.2 bits (168), Expect = 6e-14
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
+ +A+ G + + LV G D+N D G +H A + G +VS+L +D
Sbjct: 72 VHDAARTGFLDTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRR 129
Query: 185 TSKEETPLALATK 197
++ TPL LA +
Sbjct: 130 DARGLTPLELALQ 142
Score = 56.7 bits (138), Expect = 6e-10
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 137 VCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
V ++ D++ + D G T L A +RG +D+V L H
Sbjct: 116 VVSFLAAESDLHRR-DARGLTPLELALQRGAQDLVDILQGH 155
Score = 49.7 bits (120), Expect = 1e-07
Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 155 GWTALHWAAKRGQKDIVSYLL-KHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGV 210
L AA RG V LL + L +T L + LL + G
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELL--KQGA 59
Query: 211 TINTAD 216
+ N D
Sbjct: 60 SPNVQD 65
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 72.4 bits (179), Expect = 1e-15
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ G D+NA D G+T LH AA G +I LLKHGAD +
Sbjct: 51 LYLATAHGHLEIVEVLLKNGADVNAV-DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ 109
Query: 185 TSKEETPLALATK 197
+T ++
Sbjct: 110 DKFGKTAFDISIG 122
Score = 69.0 bits (170), Expect = 2e-14
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L EA+ G + V L++ G D+NA+ D G T L+ A G +IV LLK+GAD + +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 185 TSKEETPLALATK 197
+ TPL LA
Sbjct: 77 DAIGFTPLHLAAF 89
Score = 62.0 bits (152), Expect = 6e-12
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 143 KGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
+G + H + L AA+ GQ D V L+ +GAD + TPL LAT
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATA 56
Score = 60.5 bits (148), Expect = 2e-11
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
L A+ +G E L+ G D+NAQ D G TA + G +D+ L K
Sbjct: 84 LHLAAFIGHLEIAEVLLKHGADVNAQ-DKFGKTAFDISIGNGNEDLAEILQKL 135
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 75.6 bits (187), Expect = 2e-15
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
+ EA+ G ++ L+S+G +N + + LH A G V LLKHGA + +
Sbjct: 63 MHEAAIHGHQLSLRNLISQGWAVNII-TADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121
Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
T+ TPL A + V +LL + G ++
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLL--QHGASVQPES 155
Score = 74.5 bits (184), Expect = 5e-15
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A V +L+ G D+N + LH + +++ L+ GAD
Sbjct: 194 LYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVVRTASEELACLLMDFGADTQAK 251
Query: 185 TSKEETPLALATK--PEVRILL 204
++ + P+ L P ++ L
Sbjct: 252 NAEGKRPVELVPPESPLAQLFL 273
Score = 72.1 bits (178), Expect = 2e-14
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A G ++ V L+ G + + D + +H AA+RG + V+ L+ +G +
Sbjct: 129 LFNACVSGSWDCVNLLLQHGASVQPESD--LASPIHEAARRGHVECVNSLIAYGGNIDHK 186
Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
S TPL LA + V+ LL E G +N
Sbjct: 187 ISHLGTPLYLACENQQRACVKKLL--ESGADVNQGK 220
Score = 64.1 bits (157), Expect = 1e-11
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 138 CELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT- 196
L+S + +A + W+ +H AA G + + L+ G +++T+ +PL A
Sbjct: 45 IRLLSNPLMGDAV---SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACL 101
Query: 197 ---KPEVRILLGGEPGVTINTAD 216
V+ILL + G +N
Sbjct: 102 GGHLSCVKILL--KHGAQVNGVT 122
Score = 60.6 bits (148), Expect = 2e-10
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L E C L+ G D A+ + G + + +L + GA
Sbjct: 226 LHAVVRTASEELACLLMDFGADTQAK-NAEGKRPVELVPPESPLAQL-FLEREGAS 279
Score = 37.1 bits (87), Expect = 0.008
Identities = 8/50 (16%), Positives = 13/50 (26%), Gaps = 5/50 (10%)
Query: 162 AAKRGQKDIVSYLLKHGA-----DKSLLTSKEETPLALATKPEVRILLGG 206
+ S L+ G+ D P P +R+L
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNP 51
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 75.3 bits (186), Expect = 2e-15
Identities = 23/70 (32%), Positives = 28/70 (40%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A D E V L G D+N G T LH A + ++ LLK GAD +
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224
Query: 188 EETPLALATK 197
TPL A
Sbjct: 225 GRTPLGSALL 234
Score = 74.9 bits (185), Expect = 3e-15
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A + L+ G D A+ G T L A R + L HGA +
Sbjct: 199 AVEAQAASVLELLLKAGADPTAR-MYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGD 257
Query: 188 EETPLALATK 197
+ +P + +
Sbjct: 258 KLSPCSSSGS 267
Score = 70.7 bits (174), Expect = 8e-14
Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 8/107 (7%)
Query: 128 ASCLGDFEAVCELVSKGID---INAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
A + L+ ++ Q + G TALH AA G+ V L GA +
Sbjct: 16 AVIHQHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAAGAGVLVA 74
Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTADLPIVPNYIKNE 227
T L LA +LL P + +D + +
Sbjct: 75 ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121
Score = 68.7 bits (169), Expect = 4e-13
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A+ LG+ V +L + G + + G TALH A + LL+ S
Sbjct: 52 AAILGEASTVEKLYAAGAGVLVA-ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD 110
Query: 188 EETPLALATKPE 199
+ P+
Sbjct: 111 TYLTQSQDCTPD 122
Score = 68.0 bits (167), Expect = 6e-13
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
+ + E + + A+ + +G T LH A ++V L GAD +
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAE-NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT 190
Query: 188 E-ETPLALAT----KPEVRILLGGEPGVTINTAD 216
TPL LA + +LL + G
Sbjct: 191 CGRTPLHLAVEAQAASVLELLL--KAGADPTARM 222
Score = 57.2 bits (139), Expect = 2e-09
Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 10/77 (12%)
Query: 147 INAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEE---TPLALATK---PE- 199
+G TALH A + + +LL A L + + T L LA
Sbjct: 2 FGYV-TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 200 VRILLGGEPGVTINTAD 216
V L G + A+
Sbjct: 61 VEKLY--AAGAGVLVAE 75
Score = 53.3 bits (129), Expect = 5e-08
Identities = 5/54 (9%), Positives = 12/54 (22%), Gaps = 1/54 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHG 178
L A + L + G + + + D ++
Sbjct: 229 LGSALLRPNPILARLLRAHGAPEPED-GGDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 47.5 bits (114), Expect = 3e-06
Identities = 16/109 (14%), Positives = 26/109 (23%), Gaps = 19/109 (17%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQ---------HDMNGWT----ALHWAAKRGQKDIV 171
L A + C L+ D T A + + +
Sbjct: 82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE 141
Query: 172 SYLLKHGADKSLLTSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
TPL +A VR+L + G +N +
Sbjct: 142 PRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR--DAGADLNKPE 188
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 73.2 bits (181), Expect = 2e-15
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L + G E L+ G ++N + ++ G T L A+K G+ +IV LL+ GAD S
Sbjct: 105 LMWSIIFGYSEMSYFLLEHGANVNDR-NLEGETPLIVASKYGRSEIVKKLLELGADISAR 163
Query: 185 TSKEETPLALATK 197
T A A
Sbjct: 164 DLTGLTAEASARI 176
Score = 72.0 bits (178), Expect = 7e-15
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A +L+SKG ++N + D +G T L W+ G ++ +LL+HGA+ + +
Sbjct: 75 AVKNNRLGIAEKLLSKGSNVNTK-DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE 133
Query: 188 EETPLALATK 197
ETPL +A+K
Sbjct: 134 GETPLIVASK 143
Score = 71.7 bits (177), Expect = 9e-15
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A LG A+ +LV + + D+ G TAL WA K + I LL G++ +
Sbjct: 39 LMVACMLGMENAIDKLVENFDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK 97
Query: 185 TSKEETPLALATK 197
+TPL +
Sbjct: 98 DFSGKTPLMWSII 110
Score = 61.3 bits (150), Expect = 4e-11
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 136 AVCELVSKGID--INAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLA 193
+ +++ +D N + D T L A G ++ + L+++ + T L
Sbjct: 15 KDEKSINQNLDFLRNYR-DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALI 73
Query: 194 LATK 197
A K
Sbjct: 74 WAVK 77
Score = 60.5 bits (148), Expect = 7e-11
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
L AS G E V +L+ G DI+A+ D+ G TA A G+++++ +
Sbjct: 138 LIVASKYGRSEIVKKLLELGADISAR-DLTGLTAEASARIFGRQEVIKIFTEVRR 191
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 73.3 bits (181), Expect = 3e-15
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ + L ++ D G T L+ A +I L+ GAD +L
Sbjct: 10 LEAANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68
Query: 185 TSKEETPLALATK 197
S ++P A
Sbjct: 69 NSISDSPYLYAGA 81
Score = 69.4 bits (171), Expect = 6e-14
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA-DKSL 183
L A D E L+ +G DIN Q + + +A +G+ +I++Y+LKH D +
Sbjct: 43 LNIAVHNNDIEIAKALIDRGADINLQ-NSISDSPYLYAGAQGRTEILAYMLKHATPDLNK 101
Query: 184 LTSKEETPLALATK 197
L A +
Sbjct: 102 HNRYGGNALIPAAE 115
Score = 66.7 bits (164), Expect = 6e-13
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 125 LREASCLGDFEAVCELVSKGI-DINAQHDMNGWTALHWAA-----KRGQKDIVSYLLKHG 178
L A+ G + V L+ G DI+ Q + G+TAL A + +DIV L+++G
Sbjct: 110 LIPAAEKGHIDNVKLLLEDGREDIDFQ-NDFGYTALIEAVGLREGNQLYQDIVKLLMENG 168
Query: 179 ADKSLLTSKEETPLALATK 197
AD+S+ + T + A +
Sbjct: 169 ADQSIKDNSGRTAMDYANQ 187
Score = 65.2 bits (160), Expect = 2e-12
Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 14/103 (13%)
Query: 125 LREASCLGDFEAVCELVSKG-IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHG-ADKS 182
A G E + ++ D+N + G AL AA++G D V LL+ G D
Sbjct: 76 YLYAGAQGRTEILAYMLKHATPDLNKH-NRYGGNALIPAAEKGHIDNVKLLLEDGREDID 134
Query: 183 LLTSKEETPLALATKPE---------VRILLGGEPGVTINTAD 216
T L A V++L+ E G + D
Sbjct: 135 FQNDFGYTALIEAVGLREGNQLYQDIVKLLM--ENGADQSIKD 175
Score = 59.8 bits (146), Expect = 1e-10
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
L+ G D + + D +G TA+ +A ++G +I L ++
Sbjct: 164 LMENGADQSIK-DNSGRTAMDYANQKGYTEISKILAQY 200
Score = 55.5 bits (135), Expect = 4e-09
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KPEVRILLGGE 207
L A +R K + L + ++ TPL +A + L+ +
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI--D 60
Query: 208 PGVTINTAD 216
G IN +
Sbjct: 61 RGADINLQN 69
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 70.9 bits (175), Expect = 9e-15
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
LG+ E L+ +G + + + D G+ +H AA+ G D + LL+ AD ++ ++
Sbjct: 44 VMKLGNPEIARRLLLRGANPDLK-DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE 102
Query: 188 EETPLALATK 197
PL LA K
Sbjct: 103 GNLPLHLAAK 112
Score = 68.9 bits (170), Expect = 4e-14
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA-DKSL 183
+ +A+ G + + L+ D+N + D G LH AAK G +V +L+KH A +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 184 LTSKEETPLALATK 197
K +T LA
Sbjct: 133 RNHKGDTACDLARL 146
Score = 67.8 bits (167), Expect = 1e-13
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ GD E + L+ +++NAQ + G TAL G +I LL GA+ L
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQ-NGFGRTALQVMKL-GNPEIARRLLLRGANPDLK 66
Query: 185 TSKEETPLALATK 197
+ A +
Sbjct: 67 DRTGFAVIHDAAR 79
Score = 61.2 bits (150), Expect = 2e-11
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 125 LREASCLGDFEAVCELVSKG-IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
L A+ G V LV ++ + + G TA A G+ ++VS + +GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHR-NHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 53.9 bits (131), Expect = 6e-09
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK--PE-VRILLGGEPGV 210
L AA RG + ++ LL++ + + T L + PE R LL G
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLL--LRGA 61
Query: 211 TINTAD 216
+ D
Sbjct: 62 NPDLKD 67
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 69.8 bits (172), Expect = 1e-14
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 130 CLGDFEAVCELVSKGIDINAQHDMNGWT-ALHWAAKRGQKDIVSYLLKHGADKSLLTSKE 188
+G + L+ G + N D T +H AA+ G D + L + GA + +
Sbjct: 53 MMGSAQVAELLLLHGAEPNCA-DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWG 111
Query: 189 ETPLALATK 197
P+ LA +
Sbjct: 112 RLPVDLAEE 120
Score = 69.8 bits (172), Expect = 1e-14
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V +L+ G D NA + G + G + LL HGA+ +
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNAL-NRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCA 73
Query: 185 TSKEET-PLALAT----KPEVRILLGGEPGVTINTAD 216
T P+ A + +L G ++ D
Sbjct: 74 DPATLTRPVHDAAREGFLDTLVVLH--RAGARLDVCD 108
Score = 69.4 bits (171), Expect = 2e-14
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
+ +A+ G + + L G ++ D G + A ++G +DI YL D
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVC-DAWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 66.3 bits (163), Expect = 2e-13
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 144 GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK--PE-V 200
I+ + L AA RGQ + V LL+ GAD + L P+ + +
Sbjct: 2 SPGIHML-GGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVA 60
Query: 201 RILLGGEPGVTINTAD 216
+LL G N AD
Sbjct: 61 ELLL--LHGAEPNCAD 74
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 74.1 bits (183), Expect = 1e-14
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
+ A+ G + V L+ G+ Q + G TALH A K G D YL G S
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQ-NRFGCTALHLACKFGCVDTAKYLASVGEVHS-- 80
Query: 185 TSKEETPLALATK 197
+ P+ LA
Sbjct: 81 LWHGQKPIHLAVM 93
Score = 70.7 bits (174), Expect = 2e-13
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 125 LREASCLGDFEAVCELV-----SKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
L A + EA+ ++ + ++ + G + LHWA +D+ ++ G
Sbjct: 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYA-NKQGNSHLHWAILINWEDVAMRFVEMGI 235
Query: 180 DKSLLTSKEETPLALATK 197
D ++ ++ PL L+ +
Sbjct: 236 DVNMEDNEHTVPLYLSVR 253
Score = 70.3 bits (173), Expect = 2e-13
Identities = 9/68 (13%), Positives = 18/68 (26%), Gaps = 1/68 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A+ E + L K ++ G K+ + L A +
Sbjct: 297 AADPSKQEVLQLLQEKLDEVVRS-LNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRS 355
Query: 188 EETPLALA 195
A++
Sbjct: 356 RARSSAVS 363
Score = 69.1 bits (170), Expect = 6e-13
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A G + L S G + +G +H A + D+V L++ +
Sbjct: 57 LHLACKFGCVDTAKYLASVGEVHSLW---HGQKPIHLAVMANKTDLVVALVEGAKE---- 109
Query: 185 TSKEETPLALATK 197
+ + P +L +
Sbjct: 110 --RGQMPESLLNE 120
Score = 66.0 bits (162), Expect = 5e-12
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
++ D +H AA++GQ D V L++ G ++ T L LA
Sbjct: 6 TDFPKLNRIKS-DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA 60
Score = 66.0 bits (162), Expect = 6e-12
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
A + + V GID+N + D L+ + + + LL+
Sbjct: 218 AILINWEDVAMRFVEMGIDVNME-DNEHTVPLYLSVRAAMVLLTKELLQKTDV 269
Score = 64.1 bits (157), Expect = 2e-11
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 12/86 (13%)
Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLL-----KHGADKSLLTSKEETPLAL 194
LV G A+ D T L A + ++ + ++ K + + L
Sbjct: 159 LVQLGASPTAK-DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW 217
Query: 195 AT----KPEVRILLGGEPGVTINTAD 216
A + + E G+ +N D
Sbjct: 218 AILINWEDVAMRFV--EMGIDVNMED 241
Score = 61.4 bits (150), Expect = 2e-10
Identities = 14/108 (12%), Positives = 28/108 (25%), Gaps = 18/108 (16%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQ------------HDMNGWTALHWAAKRGQKDIVS 172
L + EL+ K Q + + AA +++++
Sbjct: 248 LYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQ 307
Query: 173 YLLKHGADKSLLTSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
L + + + K P R+ L P + T
Sbjct: 308 LLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKL--APSAPVRTRS 353
Score = 60.3 bits (147), Expect = 3e-10
Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 31/122 (25%)
Query: 125 LREASCLGDFEAVCELVSKG---------------------IDINAQHDMNGWTALHWAA 163
+ A + V LV I + +H G TALHW
Sbjct: 88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHC-KGQTALHWCV 146
Query: 164 KRGQ--KDIVSYLLKHGADKSLLTSKEETPLALAT----KPEVRILLGGEP---GVTINT 214
G +++ L++ GA + +ETPL A + + +++ P + ++
Sbjct: 147 GLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY 206
Query: 215 AD 216
A+
Sbjct: 207 AN 208
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 72.2 bits (178), Expect = 2e-14
Identities = 22/93 (23%), Positives = 30/93 (32%), Gaps = 9/93 (9%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A + VC L++ G N LH AA IV LL G D S K
Sbjct: 38 AIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDK 94
Query: 188 EETPLALAT----KPEVRILLGGEPGVTINTAD 216
T L A V++ + + +
Sbjct: 95 GNTALYYAVDSGNMQTVKLFV--KKNWRLMFYG 125
Score = 66.0 bits (162), Expect = 3e-12
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
A L D V +S+ + +H K G D++ LL + +
Sbjct: 133 FYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYMTSTNTN 190
Query: 185 TSKEETP-LALATK---PE-VRILLGGEPGVTINTAD 216
S P + LA E ++ L + + I +A+
Sbjct: 191 NSLLFIPDIKLAIDNKDIEMLQALF--KYDINIYSAN 225
Score = 64.5 bits (158), Expect = 9e-12
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGW-TALHWAAKRGQKDIVSYLLKHGADKSL 183
L A G+ + V V K + GW T+ + A IVSY L
Sbjct: 99 LYYAVDSGNMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF- 156
Query: 184 LTSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
+ + + + + +LL + + NT +
Sbjct: 157 DLAILLSCIHITIKNGHVDMMILLL--DYMTSTNTNN 191
Score = 64.1 bits (157), Expect = 1e-11
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
+ + D D++G +A ++A +V LL GA K+ + E P
Sbjct: 10 WKSKQLKSF-LSSKDTFKA-DVHGHSASYYAIADNNVRLVCTLLNAGALKN--LLENEFP 65
Query: 192 LALATK---PE-VRILLGGEPGVTINTAD 216
L A + V+ILL G+ + D
Sbjct: 66 LHQAATLEDTKIVKILL--FSGLDDSQFD 92
Score = 63.7 bits (156), Expect = 2e-11
Identities = 8/97 (8%), Positives = 26/97 (26%), Gaps = 15/97 (15%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWT-ALHWAAKRGQKDIVSYLLKHGADKSL 183
+ G + + L+ N + + + A +++ L K+ +
Sbjct: 165 IHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDIEMLQALFKYDINI-- 221
Query: 184 LTSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
+ ++++ E V +
Sbjct: 222 -----YSANLENVLLDDAEIAKMII--EKHVEYKSDS 251
Score = 56.8 bits (138), Expect = 3e-09
Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 8/73 (10%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
++ A D E + L I+I +A +I +++ +
Sbjct: 199 IKLAIDNKDIEMLQALFKYDINIY--------SANLENVLLDDAEIAKMIIEKHVEYKSD 250
Query: 185 TSKEETPLALATK 197
+ ++ + K
Sbjct: 251 SYTKDLDIVKNNK 263
Score = 42.1 bits (100), Expect = 2e-04
Identities = 8/71 (11%), Positives = 19/71 (26%), Gaps = 8/71 (11%)
Query: 118 VKYL-------EEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDI 170
++ L E L D E ++ K ++ + + K +
Sbjct: 211 LQALFKYDINIYSANLENVLLDDAEIAKMIIEKHVEYKSD-SYTKDLDIVKNNKLDEIIS 269
Query: 171 VSYLLKHGADK 181
+ L+
Sbjct: 270 KNKELRLMYVN 280
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 69.4 bits (171), Expect = 3e-14
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 130 CLGDFEAVCELVSKGIDINAQHDMNGWT-ALHWAAKRGQKDIVSYLLKHGADKSLLTSKE 188
+G L+ G + N D T +H AA+ G D + L + GA + +
Sbjct: 53 MMGSARVAELLLLHGAEPNCA-DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG 111
Query: 189 ETPLALATK 197
P+ LA +
Sbjct: 112 RLPVDLAEE 120
Score = 67.1 bits (165), Expect = 2e-13
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+ G + NA + G + G + LL HGA+ +
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAP-NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA 73
Query: 185 TSKEET-PLALATK---PE-VRILLGGEPGVTINTAD 216
T P+ A + + + +L G ++ D
Sbjct: 74 DPATLTRPVHDAAREGFLDTLVVLH--RAGARLDVRD 108
Score = 60.6 bits (148), Expect = 3e-11
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 141 VSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK--P 198
+ + L AA RG+ + V LL+ GA+ + S P+ +
Sbjct: 1 MEPAAGSS---MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSA 57
Query: 199 E-VRILLGGEPGVTINTAD 216
+LL G N AD
Sbjct: 58 RVAELLL--LHGAEPNCAD 74
Score = 35.9 bits (84), Expect = 0.010
Identities = 8/47 (17%), Positives = 11/47 (23%), Gaps = 6/47 (12%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIV 171
+ A LG + L + A G DI
Sbjct: 115 VDLAEELGHRDVARYLRAAAGGTRGS------NHARIDAAEGPSDIP 155
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 72.7 bits (179), Expect = 4e-14
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 125 LREASCLGDFEAV--------CELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLK 176
L + E E ++ G D+NA D + T L A ++ +V+YL+K
Sbjct: 129 LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-DCDENTPLMLAVLARRRRLVAYLMK 187
Query: 177 HGADKSLLTSKEETPLALAT----KPEVRILLG-GEPGVTINTAD 216
GAD ++ E + L A + +L + I D
Sbjct: 188 AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD 232
Score = 71.1 bits (175), Expect = 1e-13
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 125 LREASCLGDFEAVCELVS-KGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
L A+ + + V LV KG + + Q D +G T + AA+ G+ ++V YL++ GA
Sbjct: 283 LHYAAQVSNMPIVKYLVGEKGSNKDKQ-DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA 341
Query: 184 LTSKEETPLALATK 197
+ + + T LA
Sbjct: 342 VDATDHTARQLAQA 355
Score = 68.8 bits (169), Expect = 6e-13
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
A+ G E V L+ +G + A D TA A +IV + ++
Sbjct: 320 AAQEGRIEVVMYLIQQGASVEAV-DATDHTARQLAQANNHHNIVDIFDRCRPER 372
Score = 64.2 bits (157), Expect = 2e-11
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 130 CLGDFEAVCELVSKGIDINAQH-------DMNGWTALHWAAKRGQKDIVSYLLKH-GADK 181
+ LV KG ++ G TALH+AA+ IV YL+ G++K
Sbjct: 247 GRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK 306
Query: 182 SLLTSKEETPLALATK 197
+TP+ LA +
Sbjct: 307 DKQDEDGKTPIMLAAQ 322
Score = 60.4 bits (147), Expect = 4e-10
Identities = 11/103 (10%), Positives = 25/103 (24%), Gaps = 8/103 (7%)
Query: 84 MPDGHGSIVNGMENTHLNSARLPFSVLGVS-DMDRVKYLEEQ-----LREASCLGDFEAV 137
MP N + + S++ + R + + + G+
Sbjct: 18 MPPMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLG 77
Query: 138 CELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
+ + LH A G I + + +
Sbjct: 78 DFNHTNLQIPTEP-EPESPIKLHTEAA-GSYAITEPITRESVN 118
Score = 59.2 bits (144), Expect = 8e-10
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH--------GA 179
G + + + ++I + T LHW A + L+ H GA
Sbjct: 100 TEAAGSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA 157
Query: 180 DKSLLTSKEETPLALATK 197
D + + E TPL LA
Sbjct: 158 DVNAMDCDENTPLMLAVL 175
Score = 56.5 bits (137), Expect = 6e-09
Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 20/110 (18%)
Query: 125 LREASCLGDFEAVCELVSK---GIDINAQHDMNGWTALHWAAKRGQKD---IVSYLLKHG 178
L +A+ DF + +++ DI D NG TAL A +D L++ G
Sbjct: 203 LHQAAANRDFGMMVYMLNSTKLKGDIEEL-DRNGMTALMIVAHNEGRDQVASAKLLVEKG 261
Query: 179 AD--KSLLTSKEE------TPLALAT----KPEVRILLGGEPGVTINTAD 216
A K+ T L A P V+ L+ GE G + D
Sbjct: 262 AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV-GEKGSNKDKQD 310
Score = 53.0 bits (128), Expect = 8e-08
Identities = 3/61 (4%), Positives = 8/61 (13%), Gaps = 1/61 (1%)
Query: 137 VCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT 196
N G + + + + + L
Sbjct: 44 ASYDGYIKRQRNEL-QHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA 102
Query: 197 K 197
Sbjct: 103 A 103
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 70.3 bits (172), Expect = 5e-14
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 128 ASCLGDFEAVCE-LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTS 186
+ G + + E +++ D + TALHWA G +IV +LL+ G +
Sbjct: 13 LAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 187 KEETPLALA 195
+PL +A
Sbjct: 72 AGWSPLHIA 80
Score = 68.7 bits (168), Expect = 2e-13
Identities = 35/177 (19%), Positives = 56/177 (31%), Gaps = 10/177 (5%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A G E V L+ G+ +N + D GW+ LH AA G +IV LL GA + +
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDK-DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV 102
Query: 185 TSKEETPLALATK------PEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRV---ND 235
TPL A + + G P + + K +
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162
Query: 236 YQVSNQNRTHQTNPVTANQNVVTTSHHSIVNHSTTNTPAQLDGKSADVVTTSHHSIV 292
+ Q+ T A +V + + K+ V ++
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLI 219
Score = 52.6 bits (126), Expect = 6e-08
Identities = 5/45 (11%), Positives = 13/45 (28%)
Query: 153 MNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
++ + A ++ +L + + T L A
Sbjct: 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACS 49
Score = 49.5 bits (118), Expect = 6e-07
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 4/95 (4%)
Query: 86 DGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGI 145
++ +L + S + L A E LV++G
Sbjct: 138 YDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196
Query: 146 DINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
I + + T L A G ++ L G +
Sbjct: 197 SIYIE-NKEEKTPLQVAK--GGLGLILKRLAEGEE 228
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 71.2 bits (174), Expect = 8e-14
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 135 EAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLAL 194
E + +++N D +G T LHW ++V +L+KHG+++ + E+ L
Sbjct: 111 EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVK 170
Query: 195 ATK 197
A K
Sbjct: 171 AVK 173
Score = 62.4 bits (151), Expect = 6e-11
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
E + +NAQ D NG T L+ AA+ G IV LL +GAD +
Sbjct: 254 KNGERKDSILENLDLKWIIANMLNAQ-DSNGDTCLNIAARLGNISIVDALLDYGADPFIA 312
Query: 185 TSKEETPLALA 195
P+
Sbjct: 313 NKSGLRPVDFG 323
Score = 37.3 bits (86), Expect = 0.009
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAA 163
A+ LG+ V L+ G D + +G + + A
Sbjct: 290 AARLGNISIVDALLDYGADPFIA-NKSGLRPVDFGA 324
Score = 36.5 bits (84), Expect = 0.015
Identities = 12/103 (11%), Positives = 25/103 (24%), Gaps = 20/103 (19%)
Query: 133 DFEAVCELVSKGI-DINAQHDMNGWTALHWAAKRGQKD------------IVSYLLKHGA 179
D L+ + + D T LH ++ +++K
Sbjct: 179 DSGTFEALLDYLYPCLILE-DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN 237
Query: 180 DKSLLTSKEETPLALATKPEVR------ILLGGEPGVTINTAD 216
+ E+ E + + L +N D
Sbjct: 238 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQD 280
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 68.8 bits (169), Expect = 2e-13
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
Query: 128 ASCLGDFEAVCE-LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTS 186
A+ D +A+ + L +G +++ + G TALH AA + L++ +
Sbjct: 10 AAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPM 68
Query: 187 KE-----ETPLALATK---PE-VRILLGGEPGVTINTAD 216
+T L +A VR LL G +++
Sbjct: 69 TSELYEGQTALHIAVINQNVNLVRALL--ARGASVSARA 105
Score = 64.5 bits (158), Expect = 5e-12
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 12/85 (14%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQ------------HDMNGWTALHWAAKRGQKDIVS 172
L A + V L+++G ++A+ G L +AA G ++IV
Sbjct: 79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVR 138
Query: 173 YLLKHGADKSLLTSKEETPLALATK 197
L++HGAD S T L +
Sbjct: 139 LLIEHGADIRAQDSLGNTVLHILIL 163
Score = 59.9 bits (146), Expect = 2e-10
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQH----DMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L A+ + EA L+ ++ + G TALH A ++V LL GA
Sbjct: 41 LHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGAS 100
Score = 58.0 bits (141), Expect = 8e-10
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 140 LVSKGIDINAQ-----HDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L+S + + + G T A G + +L++
Sbjct: 177 LLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222
Score = 43.0 bits (102), Expect = 8e-05
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 153 MNGWTALHWAAKRGQKDIVS-YLLKHGADKSLLTSKEETPLALATK 197
M + L AAK +S L G + + ET L +A
Sbjct: 1 MIWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAAL 46
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 66.2 bits (162), Expect = 5e-13
Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 14/104 (13%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMN--GWTALHWAAKRGQKDIVSYLLKHGADKS 182
+ A+ LG +E EL KG + + + L + I +L+ GAD
Sbjct: 10 VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK 69
Query: 183 LLTSKEETPLALA----------TKPEVRILLGGEPGVTINTAD 216
T + T T +I L E G I
Sbjct: 70 SRTKEGTTLFFPLFQGGGNDITGTTELCKIFL--EKGADITALY 111
Score = 61.6 bits (150), Expect = 3e-11
Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
G+ + + D G TAL + + + + + +
Sbjct: 140 FSQSGLQLLIK-DKWGLTALEFVKRCQKPIALKMMEDYIKK 179
Score = 57.4 bits (139), Expect = 7e-10
Identities = 13/96 (13%), Positives = 24/96 (25%), Gaps = 14/96 (14%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVS-------YLLKHGADKSLL 184
G E + KG DI A + D + G +
Sbjct: 92 GTTELCKIFLEKGADITAL-YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK 150
Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
T L + P ++++ + N +
Sbjct: 151 DKWGLTALEFVKRCQKPIALKMME--DYIKKYNLKE 184
Score = 45.4 bits (108), Expect = 7e-06
Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 9/71 (12%)
Query: 153 MNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEE---TPLALATKPE----VRILLG 205
M+ + + AA G + L + G + K L L+
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLI- 62
Query: 206 GEPGVTINTAD 216
G I +
Sbjct: 63 -NKGADIKSRT 72
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 67.3 bits (164), Expect = 2e-12
Identities = 12/104 (11%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Query: 94 GMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDM 153
+ H N + + + C + +C L++ +
Sbjct: 68 CLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA- 126
Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGADK--SLLTSKEETPLALA 195
+ A AA+ G +++ L + + +++ ++ LA
Sbjct: 127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA 170
Score = 61.5 bits (149), Expect = 2e-10
Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 17/97 (17%)
Query: 116 DRVKYLEEQ--------------LREASCLGDFEAVCELVSKGIDIN-AQHDMNGWTALH 160
D + L R A+ G + L A + A
Sbjct: 109 DTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFR 168
Query: 161 WAAKRGQKDIVSYLLKHGADKSL--LTSKEETPLALA 195
AA+ G +++ L + ++ + ++ A
Sbjct: 169 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205
Score = 49.2 bits (117), Expect = 1e-06
Identities = 6/57 (10%), Positives = 15/57 (26%), Gaps = 4/57 (7%)
Query: 141 VSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
+ + L A + G + + LL + +L + +
Sbjct: 306 IKALAPTATI-PGDANELLRLALRLGNQGACALLLSIPSVLAL---TKANNYYINET 358
Score = 38.0 bits (88), Expect = 0.005
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
LR A LG+ A L+S + + + G+ D+ + L+H
Sbjct: 323 LRLALRLGNQGACALLLSIP----SVLALTKANNYYINETGGRLDLRAVALEHHH 373
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 65.4 bits (159), Expect = 6e-12
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 127 EASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTS 186
+ + V ++ G ++A+ +G TALH+AA Q D + LLK A +
Sbjct: 199 KVANQASLPLVDFIIQNGGHLDAK-AADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE 257
Query: 187 KEETPLALATKP 198
ET L +A K
Sbjct: 258 AGETALDIARKK 269
Score = 34.2 bits (78), Expect = 0.076
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
L A+ + + L+ + + G TAL A K+ K+ L + A
Sbjct: 230 LHYAALYNQPDCLKLLLKGRALVGTV-NEAGETALDIARKKHHKECEELLEQAQAGT 285
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 66.2 bits (161), Expect = 1e-11
Identities = 84/490 (17%), Positives = 145/490 (29%), Gaps = 165/490 (33%)
Query: 79 LVLSQMPDGHGSIVNGME---NTHLN--------SARLPFSVLGVSDMDR--------VK 119
L LS HGS+ + + + + LP G + D K
Sbjct: 9 LTLS-----HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 120 YLE--EQLREASCLGDFEAVCELVS--------KGIDIN---AQHDMNGWTALHWAAKRG 166
+L L E S +G F+ V L +G DI+ A+ T L K
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL---VKT- 119
Query: 167 QKDIVSYLLKHGADKSLLTSKEETPL-ALATKPEVRI--LLGG----------------- 206
++ I +Y+ K K + L + ++ + GG
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 207 -EPGVT--INTAD---LPIVPNYIKNEPLDPRVNDYQ--VSNQNRTHQTN-----PVTAN 253
V I + ++ + E + + + + N + T + P++
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 254 QNVVT-TSHHSIVNHSTTNTPAQLDGKSADVVTTSHHSIVNHSTANTPAQLDELVLKVRI 312
V +H+ + TP +L + HS LV V I
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGEL--------RSYLKGATGHSQG--------LVTAVAI 283
Query: 313 AQ-DMDDDFIEIELNRLTELTY--------YSLLNIC------CKELNIDSPQTILKIRK 357
A+ D + F +T L + Y ++ E N P +L I
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS- 342
Query: 358 LPNTIIRKDKDVARLTMFQEIELVLSQMP-DGHGSI--VNGMEN---------------- 398
++ + + + S +P I VNG +N
Sbjct: 343 ----------NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 399 -------THLNSARLPFSAKGVNNYPSIHNTKITRFCTRTTEEIPVCGV--HDPLGSLQG 449
+ L+ +R+PFS + N RF +PV H L L
Sbjct: 393 LRKAKAPSGLDQSRIPFSERK----LKFSN----RF-------LPV-ASPFHSHL--LVP 434
Query: 450 ENDIIPGLED 459
+D+I +D
Sbjct: 435 ASDLI--NKD 442
Score = 40.0 bits (93), Expect = 0.002
Identities = 52/292 (17%), Positives = 88/292 (30%), Gaps = 106/292 (36%)
Query: 1 MIQKLVLKVRIAQD----MDDDFIEIELNRLTELTY-YSLLNICC---KELNID-SPQTI 51
M L + AQD D+ F + TY +S+L+I L I +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKD---------TYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 52 LKIRKLPNTIIRK---DKDVARLTMFQEIELVLSQM----PDGHGSIVNGMENTH---LN 101
+IR+ + +I + D + +F+EI + G +++ + T
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG---LLSATQFTQPALTL 1738
Query: 102 SARLPFSVL---GVSDMDRVKYLEEQLREA--SCLG------------DFEAVCELVSK- 143
+ F L G+ D A S LG E++ E+V
Sbjct: 1739 MEKAAFEDLKSKGLIPAD--ATF------AGHS-LGEYAALASLADVMSIESLVEVVFYR 1789
Query: 144 GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPEVRIL 203
G+ + A R + +Y + +A P
Sbjct: 1790 GM------------TMQVAVPRDELGRSNYGM------------------IAINP----- 1814
Query: 204 LGGEPGVTINTADLPIVPNYI---KNEPLDPRVNDYQVSNQNRTHQTNPVTA 252
G + + L V + ++ VN Y V NQ Q V A
Sbjct: 1815 --GRVAASFSQEALQYVVERVGKRTGWLVEI-VN-YNVENQ----QY--VAA 1856
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.3 bits (158), Expect = 2e-11
Identities = 93/564 (16%), Positives = 172/564 (30%), Gaps = 210/564 (37%)
Query: 11 IAQDMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVAR 70
I +D F++ N CK++ D P++IL ++ + I+ KD
Sbjct: 21 ILSVFEDAFVD---------------NFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 71 LTMF------QE------IELVL--------------SQMPDGHGSIVNGMENTHLNSAR 104
L +F QE +E VL + P + + N +
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 105 LPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCEL-VSKGIDINAQHDMNG----WTAL 159
F+ VS R++ +LR +A+ EL +K + I + G W AL
Sbjct: 125 -VFAKYNVS---RLQ-PYLKLR--------QALLELRPAKNVLI---DGVLGSGKTWVAL 168
Query: 160 ----------------HWAAKRGQKDIVSYLLK------HGADKSLLTSKE---ETPLAL 194
W + +L+ + D + + + L +
Sbjct: 169 DVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 195 -ATKPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSN----QNRTHQTNP 249
+ + E+R LL +P L + L V + + N +
Sbjct: 228 HSIQAELRRLLKSKPYEN----CLLV---------LL-NVQNAKAWNAFNLSCKI----- 268
Query: 250 VTANQNVVTTSHHSIVNHSTTNTPAQLDGKSADVVTTSHHSIVNHSTANTPAQLDELVLK 309
++TT + + TT+H S+ +HS TP ++ L+LK
Sbjct: 269 ------LLTTRFKQVTD-------------FLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 310 VRIAQDMDD-----------------DFIEIELNRLTELTYYSLLNICCKELNIDSPQTI 352
+ D + I L + K +N D TI
Sbjct: 310 Y-LDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT---WDNW-------KHVNCDKLTTI 358
Query: 353 LK--IRKLPNTIIRK--------DKDV----ARLTMF------QEIELVLSQMPDGHGSI 392
++ + L RK L++ ++ +V++++ S+
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK--YSL 416
Query: 393 VN--GMENT-HLNSARLPFSAKGVNNYPSIHNTKITRFCTRTTEEIPVCGVHDPLGSLQG 449
V E+T + S L K + N ++H + + + IP D
Sbjct: 417 VEKQPKESTISIPSIYLELKVK-LENEYALHRSIVDHY------NIPKT--FDS------ 461
Query: 450 ENDIIPGLED---------HFSAA 464
+D+IP D H
Sbjct: 462 -DDLIPPYLDQYFYSHIGHHLKNI 484
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 60.4 bits (146), Expect = 2e-10
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 125 LREASCLGD---FEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
L A D V LV +++ Q G TALH+ + + LL+ A
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQ-TGKGSTALHYCCLTDNAECLKLLLRGKASI 231
Query: 182 SLLTSKEETPLALATK 197
+ ETPL +A +
Sbjct: 232 EIANESGETPLDIAKR 247
Score = 36.1 bits (83), Expect = 0.018
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLK 176
L + E + L+ I + +G T L A + + L +
Sbjct: 209 LHYCCLTDNAECLKLLLRGKASIEIA-NESGETPLDIAKRLKHEHCEELLTQ 259
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 59.4 bits (144), Expect = 4e-10
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L G + L + G T L AAK G+ +I ++L+
Sbjct: 192 LVIHMYDGLLQMGARLCPTVQLEEIS-NHQGLTPLKLAAKEGKIEIFRHILQREFS 246
Score = 59.0 bits (143), Expect = 4e-10
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 18/91 (19%)
Query: 125 LREASCLGDFEAVCELVSKGI---DINAQ---------------HDMNGWTALHWAAKRG 166
L A+C ++ V L+ + A + +AL G
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG 199
Query: 167 QKDIVSYLLKHGADKSLLTSKEETPLALATK 197
+ + L + + + TPL LA K
Sbjct: 200 LLQMGARLCPTVQLEEISNHQGLTPLKLAAK 230
Score = 54.8 bits (132), Expect = 1e-08
Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 27/119 (22%)
Query: 116 DRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLL 175
+ L + +++ + G +ALH A ++ V L+
Sbjct: 60 ACIMPLLQIDKDSGNPKPL--------VNAQCTDE-FYQGHSALHIAIEKRSLQCVKLLV 110
Query: 176 KHGADKSLLTSKE-------------ETPLALATK---PE-VRILL-GGEPGVTINTAD 216
++GAD L E PL+LA + V LL ++ D
Sbjct: 111 ENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATD 169
Score = 44.8 bits (106), Expect = 2e-05
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 10/69 (14%)
Query: 123 EQLREASCLGDFEAVCELVSKGI-------DINAQHDMNGWTALHWAA---KRGQKDIVS 172
++L G E + L+ D G T L A + G +
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 173 YLLKHGADK 181
LL+ D
Sbjct: 64 PLLQIDKDS 72
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 58.6 bits (142), Expect = 8e-10
Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 29/114 (25%)
Query: 132 GDFEAVCELVSKGIDINAQH----------DMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
G + + L+ ++ G TALH A +R +V+ L+++GAD
Sbjct: 68 GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV 127
Query: 182 --------------SLLTSKEETPLALATK---PE-VRILLG-GEPGVTINTAD 216
E PL+LA V+ LL I+ D
Sbjct: 128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD 181
Score = 55.6 bits (134), Expect = 7e-09
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 8/63 (12%)
Query: 135 EAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLAL 194
+L + G T L AA G+ +++Y+L+ E
Sbjct: 214 ILGAKLHPTLKLEEIT-NRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHA 265
Query: 195 ATK 197
A
Sbjct: 266 AAH 268
Score = 53.6 bits (129), Expect = 3e-08
Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 27/132 (20%)
Query: 110 LGVSDMDRVKYLEEQLREASCLGDFEAVCELV-------SKGIDINAQHDMNGWTALHWA 162
+ + Y + +A + + + L+ + D + G T L A
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
Query: 163 ---AKRGQKDIVSYLLKHGADKSLLT-----------SKEETPLALAT----KPEVRILL 204
GQ D ++ LL L K +T L +A V +L+
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121
Query: 205 GGEPGVTINTAD 216
E G + A
Sbjct: 122 --ENGADVQAAA 131
Score = 51.7 bits (124), Expect = 2e-07
Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 20/92 (21%)
Query: 125 LREASCLGDFEAVCELVSKGI---DINAQHDMNGWTALHWAAKRGQKDIVS--------- 172
L A+C V L+ DI+A+ D G T LH + + +
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPADISAR-DSVGNTVLHALVEVADNTVDNTKFVTSMYN 210
Query: 173 -------YLLKHGADKSLLTSKEETPLALATK 197
L + + K TPLALA
Sbjct: 211 EILILGAKLHPTLKLEEITNRKGLTPLALAAS 242
Score = 35.9 bits (83), Expect = 0.020
Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 8/42 (19%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKD 169
A+ G + ++ + I + H AA
Sbjct: 240 AASSGKIGVLAYILQREI--------HEPECRHAAAHHHHHH 273
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 59.0 bits (142), Expect = 1e-09
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L +A+ A L+ G ++N D G LH A G + LK GAD
Sbjct: 239 LIQATAANSLLACEFLLQNGANVNQA-DSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297
Query: 185 TSKEETPLALA 195
S+ PL +A
Sbjct: 298 DSEGRDPLTIA 308
Score = 44.4 bits (104), Expect = 5e-05
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 114 DMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDM-NGWTALHWAAKRGQKDIVS 172
D+ + R + + + ++ G D+N + + T L A
Sbjct: 193 DLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACE 252
Query: 173 YLLKHGADKSLLTSKEETPLALATK 197
+LL++GA+ + S PL AT
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATI 277
Score = 30.5 bits (68), Expect = 1.2
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLL 175
L A+ LG C + +G D+ A+ D G L A + DIV+ L
Sbjct: 272 LHHATILGHTGLACLFLKRGADLGAR-DSEGRDPLTIAMETANADIVTLLR 321
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 52.9 bits (127), Expect = 6e-08
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 22/104 (21%)
Query: 135 EAVCELVSKGIDINAQH---DMNGWTALHWAAKRGQKDIVSYLLKHGAD----------- 180
+ + + IN+ G TALH A +R K V L++ GAD
Sbjct: 70 DIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQ 129
Query: 181 ---KSLLTSKEETPLALATK---PE-VRILLG-GEPGVTINTAD 216
+ E PL+LA P V L G + D
Sbjct: 130 PKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQD 173
Score = 50.9 bits (122), Expect = 2e-07
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 140 LVSKGIDINAQ------HDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L+ K + + +G + L AAK G+ I ++++
Sbjct: 204 LLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250
Score = 49.0 bits (117), Expect = 1e-06
Identities = 21/89 (23%), Positives = 28/89 (31%), Gaps = 20/89 (22%)
Query: 128 ASCLGDFEAVCELVSKGI---DINAQHDMNGWTALHWAA---------KRGQKDIVSYLL 175
A+C V L G D+ Q D G T LH + + LL
Sbjct: 147 AACTNQPHIVHYLTENGHKQADLRRQ-DSRGNTVLHALVAIADNTRENTKFVTKMYDLLL 205
Query: 176 KHGADKSLLTSKEE-------TPLALATK 197
A T+ E +PL +A K
Sbjct: 206 IKCAKLFPDTNLEALLNNDGLSPLMMAAK 234
Score = 45.5 bits (108), Expect = 1e-05
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 10/71 (14%)
Query: 120 YLEEQLREASCLGDFE---AVCE-LVSKGIDINA---QHDMNGWTALHWAA---KRGQKD 169
+ L + G + + L++ + + G T L A G+ D
Sbjct: 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRND 63
Query: 170 IVSYLLKHGAD 180
+ LL
Sbjct: 64 TIPILLDIAEK 74
Score = 31.3 bits (71), Expect = 0.50
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 14/50 (28%)
Query: 157 TALHWAAKRG----QKDIVSYLLKHGADKSLLTSKE-------ETPLALA 195
L RG + ++S+LL H LT +E +T L A
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKR---LTDEEFREPSTGKTCLPKA 53
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 49.9 bits (119), Expect = 1e-06
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 127 EASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTS 186
+ + V ++ G ++A+ +G TALH+AA Q D + LLK A +
Sbjct: 180 KVANQASLPLVDFIIQNGGHLDAK-AADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE 238
Query: 187 KEETPLALATKPE 199
ET L +A K
Sbjct: 239 AGETALDIARKKH 251
Score = 48.0 bits (114), Expect = 4e-06
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 12/102 (11%)
Query: 115 MDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQH-----DMNGWTALHWAAKRGQKD 169
R ++L A C D +V E + G D LH A K +
Sbjct: 126 ARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA 185
Query: 170 ---IVSYLLKHGADKSLLTSKEETPLALAT---KPE-VRILL 204
+V +++++G + T L A +P+ +++LL
Sbjct: 186 SLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 227
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics,
joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A
{Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Length = 123
Score = 29.6 bits (66), Expect = 0.85
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 111 GVSDMDRVKYLEEQLREASCLGDFEAVCELVS 142
G++ D + E++L A D E++ L+
Sbjct: 1 GMNQRDVILDCEKKLLTAIQNNDVESLEVLLH 32
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 28.9 bits (64), Expect = 5.4
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 303 LDELVLKVRIAQDMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKI 355
L + I D D IE ++ ++++ + +E +L++
Sbjct: 1146 LSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEVEENLYKQSPWLLRL 1198
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 27.6 bits (62), Expect = 8.9
Identities = 21/135 (15%), Positives = 34/135 (25%), Gaps = 34/135 (25%)
Query: 102 SARLPFSV----LGVSDMDRVKYLEEQLREAS--CLGDFEAVCELVSKGIDINAQHDMNG 155
+ P SV +G+ R E L + F EL I+
Sbjct: 155 AEAYPLSVFPDAMGLKQEGR-----ENLLPYAGLVFNAFGPPNELRQSAIE--RSAPHQA 207
Query: 156 WTALHWAAKRGQKDIVSYLLKHGADKSLLTSKE-------------ET--------PLAL 194
+ A + +D +T +E +T L
Sbjct: 208 YVAEQCQRPNLAPGGFGACIHAFSDTGEITPEEAPLLVRSLLSAGLDTTVNGIAAAVYCL 267
Query: 195 ATKPEVRILLGGEPG 209
A P+ L +P
Sbjct: 268 ARFPDEFARLRADPS 282
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.383
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,975,527
Number of extensions: 416370
Number of successful extensions: 1414
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1127
Number of HSP's successfully gapped: 296
Length of query: 464
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 367
Effective length of database: 3,993,456
Effective search space: 1465598352
Effective search space used: 1465598352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)