RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6441
(464 letters)
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 75.0 bits (183), Expect = 3e-15
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L AS +G V L+ +G N ++ T LH AA+ G ++ YLL++ A +
Sbjct: 4 LHVASFMGHLPIVKNLLQRGASPNVS-NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 62
Query: 185 TSKEETPLALATK 197
++TPL A +
Sbjct: 63 AKDDQTPLHCAAR 75
Score = 58.8 bits (141), Expect = 5e-10
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
G++ LH AA++G DIV+ LLK+GA + ++S TPLA+A +
Sbjct: 327 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR 372
Score = 56.5 bits (135), Expect = 2e-09
Identities = 23/82 (28%), Positives = 26/82 (31%), Gaps = 1/82 (1%)
Query: 111 GVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDI 170
S K L A+ G L+ + NA NG T LH A DI
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNNLDI 180
Query: 171 VSYLLKHGADKSLLTSKEETPL 192
V LL G TPL
Sbjct: 181 VKLLLPRGGSPHSPAWNGYTPL 202
Score = 54.2 bits (129), Expect = 1e-08
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L +A+ G + V L+ G N +G T L A + G + L + S +
Sbjct: 334 LHQAAQQGHTDIVTLLLKNGASPNEV-SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFV 392
Query: 185 TSKEETPLALATKPEV 200
++ + + PE
Sbjct: 393 LVSDKHRM---SFPET 405
Score = 53.8 bits (128), Expect = 2e-08
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L A+ G E L+ +NA+ + T LH AA+ G ++V LL++ A+
Sbjct: 37 LHMAARAGHTEVAKYLLQNKAKVNAK-AKDDQTPLHCAARIGHTNMVKLLLENNAN 91
Score = 51.1 bits (121), Expect = 2e-07
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 157 TALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK---PE-VRILLGGEPGVTI 212
T LH A+ G IV LL+ GA ++ K ETPL +A + E + LL + +
Sbjct: 2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL--QNKAKV 59
Query: 213 NTAD 216
N
Sbjct: 60 NAKA 63
Score = 44.6 bits (104), Expect = 2e-05
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E V L+SK + N + +G T LH A+ G + L+KHG
Sbjct: 235 LHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT 293
Query: 185 TSKEETPL 192
T TPL
Sbjct: 294 TRMGYTPL 301
Score = 43.0 bits (100), Expect = 5e-05
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A + + V L+ +G ++ NG+T LH AAK+ Q ++ LL++G +
Sbjct: 169 LHVAVHHNNLDIVKLLLPRGGSPHSP-AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 227
Query: 185 TSKEETPLALATK 197
+ + TPL LA +
Sbjct: 228 SVQGVTPLHLAAQ 240
Score = 40.3 bits (93), Expect = 4e-04
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A+ G E V L+ K G+T LH AAK G+ + LL+ A +
Sbjct: 106 AAREGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 164
Query: 188 EETPLALATK 197
TPL +A
Sbjct: 165 GLTPLHVAVH 174
Score = 36.9 bits (84), Expect = 0.004
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
Query: 86 DGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGI 145
+G + + + +L+ +L G S L A+ E L+ G
Sbjct: 164 NGLTPLHVAVHHNNLDIVKLLLP-RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 222
Query: 146 DINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
NA + G T LH AA+ G ++V+ LL A+ +L TPL L
Sbjct: 223 SANA-ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLV 271
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 66.7 bits (161), Expect = 6e-13
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G E + L+ D+N + +GWT LH AA G+++ L+++ D +
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYDVNIKDY-DGWTPLHAAAHWGKEEACRILVENLCDMEAV 261
Query: 185 TSKEETPLALATKPEVRILL 204
+T +A + + L
Sbjct: 262 NKVGQTAFDVADEDILGYLE 281
Score = 48.6 bits (114), Expect = 6e-07
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ G EA LV D+ A + G TA A +DI+ YL + ++LL
Sbjct: 236 LHAAAHWGKEEACRILVENLCDMEAV-NKVGQTAFDVAD----EDILGYLEELQKKQNLL 290
Score = 45.9 bits (107), Expect = 4e-06
Identities = 11/44 (25%), Positives = 15/44 (34%)
Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
+ A G + V LL+ GAD + T L A
Sbjct: 37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA 80
Score = 45.9 bits (107), Expect = 4e-06
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
A GD E V L+ +G DIN +++G TALH A D+V +L+++
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACIDDNVDMVKFLVEN 95
Score = 41.2 bits (95), Expect = 1e-04
Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 7/128 (5%)
Query: 93 NGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHD 152
G + +L + +E +E + +A L S I+ H
Sbjct: 138 EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR-HA 196
Query: 153 MNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KPEVRILLGGEP 208
+G TALH AA +G +++ L++ D ++ TPL A + RIL+ E
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV--EN 254
Query: 209 GVTINTAD 216
+ +
Sbjct: 255 LCDMEAVN 262
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 65.9 bits (159), Expect = 8e-13
Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 1/102 (0%)
Query: 80 VLSQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCE 139
+ ++ DGH + + + RL + L A +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
L+ G D A+ G T L A R + L HGA +
Sbjct: 211 LLKAGADPTAR-MYGGRTPLGSALLRPNPILARLLRAHGAPE 251
Score = 53.9 bits (128), Expect = 9e-09
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEE---TPLALATK 197
+G TALH A + + +LL A L + + T L LA
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAI 54
Score = 42.4 bits (98), Expect = 5e-05
Identities = 21/64 (32%), Positives = 26/64 (40%)
Query: 134 FEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLA 193
E V L G D+N G T LH A + ++ LLK GAD + TPL
Sbjct: 171 AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLG 230
Query: 194 LATK 197
A
Sbjct: 231 SALL 234
Score = 40.1 bits (92), Expect = 3e-04
Identities = 13/55 (23%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 125 LREASCLGDFEAVCELVSKGIDINA--QHDMNGWTALHWAAKRGQKDIVSYLLKH 177
L A + L+ + G TALH AA G+ V L
Sbjct: 13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 65.1 bits (157), Expect = 2e-12
Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 1/95 (1%)
Query: 82 SQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELV 141
S+ G ++ + +++ + G + + + + + A+ G E V L+
Sbjct: 182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI 241
Query: 142 SKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLK 176
+G + A D TA A +IV +
Sbjct: 242 QQGASVEAV-DATDHTARQLAQANNHHNIVDIFDR 275
Score = 57.1 bits (136), Expect = 9e-10
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ + + V LV + + D +G T + AA+ G+ ++V YL++ GA +
Sbjct: 191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV 250
Query: 185 TSKEETPLALATK 197
+ + T LA
Sbjct: 251 DATDHTARQLAQA 263
Score = 50.9 bits (120), Expect = 9e-08
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH--------GA 179
G + + + + N + T LHW A + L+ H GA
Sbjct: 8 TEAAGSYAITEPITRESV--NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA 65
Query: 180 DKSLLTSKEETPL 192
D + + E TPL
Sbjct: 66 DVNAMDCDENTPL 78
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 61.9 bits (149), Expect = 3e-11
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 125 LREASCLGDFEAVCELVSK-GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
L A V L+ + I+IN D +G TAL A + K I L K GA
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDT-DSDGKTALLLAVELKLKKIAELLCKRGAS 278
Score = 57.7 bits (138), Expect = 7e-10
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
L +A D + V +L+ G ++N Q + GWT LH A + ++DIV LL+H
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Score = 56.1 bits (134), Expect = 2e-09
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Query: 135 EAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH-GADKSLLTSKEETPLA 193
L+ G D+N + G T L A ++ +V LL+ + + S +T L
Sbjct: 200 AITHLLLDHGADVNVR-GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258
Query: 194 LATKPE----VRILLGGEPGVTINTADL 217
LA + + +L + G + + DL
Sbjct: 259 LAVELKLKKIAELLC--KRGASTDCGDL 284
Score = 43.0 bits (100), Expect = 4e-05
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 153 MNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKE-ETPLALATK 197
+ L A + D+V LL+ GA+ + + TPL A +
Sbjct: 3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQ 48
Score = 41.9 bits (97), Expect = 8e-05
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 125 LREASCLGDFEAVCELVSK-GIDINAQHDMNGWTALHWAAKRGQ---KDIVSYLLKHGAD 180
L +A+ G E + L+ + G D+NA +M +H + I LL HGAD
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211
Query: 181 KSLLTSKEETPLALATK---PEVRILLGGEPGVTINTAD 216
++ + +TPL LA + + L + + IN D
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD 250
Score = 41.1 bits (95), Expect = 1e-04
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 150 QHDMNGWTALHWAAKRGQKDIVSYLLKH-GAD 180
+ G TAL AA++G +++ LL GAD
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILLDEMGAD 174
Score = 33.0 bits (74), Expect = 0.061
Identities = 34/169 (20%), Positives = 61/169 (36%), Gaps = 14/169 (8%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
A+ G + + +SKG D+N D G+TA AA G+ + +L K GA+ +L
Sbjct: 79 AAIAGSVKLLKLFLSKGADVNE-CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT 137
Query: 188 EE----------TPLALATK---PEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVN 234
+E T L A + EV +L E G +N D I +
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD 197
Query: 235 DYQVSNQNRTHQTNPVTANQNVVTTSHHSIVNHSTTNTPAQLDGKSADV 283
+++ H + + T ++ L+ + ++
Sbjct: 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 60.5 bits (145), Expect = 9e-11
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 135 EAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLAL 194
E + +++N D +G T LHW ++V +L+KHG+++ + E+ L
Sbjct: 87 EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVK 146
Query: 195 A 195
A
Sbjct: 147 A 147
Score = 59.7 bits (143), Expect = 1e-10
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 144 GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
+NAQ D NG T L+ AA+ G IV LL +GAD + P+
Sbjct: 249 ANMLNAQ-DSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 299
Score = 38.9 bits (89), Expect = 8e-04
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAA 163
L A+ LG+ V L+ G D + +G + + A
Sbjct: 263 LNIAARLGNISIVDALLDYGADPFIA-NKSGLRPVDFGA 300
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 209
Score = 55.6 bits (132), Expect = 2e-09
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 135 EAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
+ + +L+++G ++NA D G T+LH AA+ + D LL
Sbjct: 3 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDA 45
Score = 50.9 bits (120), Expect = 5e-08
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 124 QLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYL 174
L A+ G +EA L+ + D A++R DIV L
Sbjct: 159 PLFLAAREGSYEASKALLDNFANREIT-DHMDRLPRDVASERLHHDIVRLL 208
Score = 42.5 bits (98), Expect = 4e-05
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
L A+ + + EAV L+ + +AQ D T L AA+ G + LL + A++ +
Sbjct: 127 LHWAAAVNNTEAVNILLMHHANRDAQ-DDKDETPLFLAAREGSYEASKALLDNFANREIT 185
Query: 185 TSKEETPLALATK 197
+ P +A++
Sbjct: 186 DHMDRLPRDVASE 198
Score = 28.2 bits (61), Expect = 2.0
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 168 KDIVSYLLKHGADKSLLTSKE-ETPLALATK 197
++S LL GA+ + K ET L LA +
Sbjct: 2 AQVISDLLAQGAELNATMDKTGETSLHLAAR 32
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 54.5 bits (129), Expect = 4e-09
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 111 GVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDI 170
G + ++ L AS G V LV G D + + + + T L A R DI
Sbjct: 167 GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK-NCHNDTPLMVARSRRVIDI 225
Query: 171 V 171
+
Sbjct: 226 L 226
Score = 52.5 bits (124), Expect = 2e-08
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 130 CLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEE 189
+ ++ +L+ + +G +ALH A+ RG +V L++ GAD SL +
Sbjct: 152 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND 211
Query: 190 TPLALATK 197
TPL +A
Sbjct: 212 TPLMVARS 219
Score = 49.8 bits (117), Expect = 2e-07
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 154 NGWTALHWAAKRGQKDIVSYLLK----HGADKSLLTSKEETPLALATK 197
+G T LH A +G V L+ G + + + +TPL LA
Sbjct: 2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI 49
Score = 37.1 bits (84), Expect = 0.003
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 125 LREASCLGDFEAVCELVS----KGIDINAQHDMNGWTALHWAAKR 165
L A G+ AV LV+ G +++ + T LH A
Sbjct: 7 LHIAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVIT 50
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 53.7 bits (128), Expect = 1e-08
Identities = 8/65 (12%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 130 CLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD--KSLLTSK 187
C + +C L++ + + A AA+ G +++ L + +++ ++
Sbjct: 102 CSSALDTLCLLLTSDEIVKVI-QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE 160
Query: 188 EETPL 192
Sbjct: 161 NYHAF 165
Score = 48.0 bits (113), Expect = 1e-06
Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 99 HLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHD----MN 154
L++ F ++ S+ + Y+ L + + + L+S +
Sbjct: 257 KLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD 316
Query: 155 GWTALHWAAKRGQKDIVSYLLKHGADKSL 183
L A + G + + LL + +L
Sbjct: 317 ANELLRLALRLGNQGACALLLSIPSVLAL 345
Score = 44.5 bits (104), Expect = 2e-05
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQ-HDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
R A+ G + L + A AA+ G +++ L + +
Sbjct: 130 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 187
Score = 42.6 bits (99), Expect = 6e-05
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 4/78 (5%)
Query: 123 EQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSY---LLKHGA 179
EQ+R+ CL D + + + AA G + LL
Sbjct: 59 EQVRQLLCLYYAHYNRNAKQLWSDAHKK-GIKSEVICFVAAITGCSSALDTLCLLLTSDE 117
Query: 180 DKSLLTSKEETPLALATK 197
++ ++ LA +
Sbjct: 118 IVKVIQAENYQAFRLAAE 135
Score = 41.4 bits (96), Expect = 1e-04
Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 8/106 (7%)
Query: 97 NTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGW 156
+ R +++ +A L + + V +LV+K
Sbjct: 224 AYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKS---ECLQGFYML 280
Query: 157 TALHWAAKRGQKDIVSYLLKHGADKSLL-----TSKEETPLALATK 197
L D + +LL K+L L LA +
Sbjct: 281 RNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR 326
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 50.0 bits (118), Expect = 2e-07
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 124 QLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
L A+ G E V L+ KG +NA + NG T LH+AA + + +I LL+ GA+
Sbjct: 73 PLHIAASAGRDEIVKALLGKGAQVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 131
Query: 184 LTSKEETPL 192
E T +
Sbjct: 132 KDHYEATAM 140
Score = 46.9 bits (110), Expect = 1e-06
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 124 QLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLK 176
L A E LVS+G I + + T L A G I+ +++
Sbjct: 172 PLHLACDEERVEEAKLLVSQGASIYIE-NKEEKTPLQVAKG-GLGLILKRMVE 222
Score = 46.5 bits (109), Expect = 2e-06
Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 35/117 (29%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQ--------------------------------HD 152
L A+ E L+ G + +A+ D
Sbjct: 107 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD 166
Query: 153 MNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK---PEVRILLGG 206
G T LH A + + L+ GA + +E+TPL +A ++ ++ G
Sbjct: 167 TEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMVEG 223
Score = 40.0 bits (92), Expect = 3e-04
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQ 167
G E + E + + + D + TALHWA G
Sbjct: 14 GKLEELKESILADKSLATRTDQDSRTALHWACSAGH 49
Score = 27.2 bits (59), Expect = 3.2
Identities = 6/40 (15%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 159 LHWAAKRGQKDIV-SYLLKHGADKSLLTSKEETPLALATK 197
+ A G+ + + +L + + T L A
Sbjct: 7 VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACS 46
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 48.4 bits (114), Expect = 2e-07
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQH-----DMNGWTALHWAAK---RGQKDIVSYLLK 176
L EA D + + + G+D+ + TALH A + R IV +L++
Sbjct: 10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69
Query: 177 HGAD 180
+ +
Sbjct: 70 NSGN 73
Score = 45.4 bits (106), Expect = 2e-06
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 151 HDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
+ +G T L A + + L + + +
Sbjct: 110 ANESGETPLDIAKRLKHEHCEELLTQALSGR 140
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 229
Score = 49.8 bits (117), Expect = 2e-07
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 143 KGIDINAQHDMNGWTALHWAAKRGQKDIVSYLL-KHGADKSLLTSKEETPLALATKPEVR 201
G D GWT L A G D L+ K+GA+ L+ +K +A +V+
Sbjct: 160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVK 219
Query: 202 ILL 204
Sbjct: 220 KFF 222
Score = 47.9 bits (112), Expect = 8e-07
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 133 DFEAVCELVSK-GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
+A LV K G + + D G A A + + + L + D
Sbjct: 184 HGDAAVLLVEKYGAEYDLV-DNKGAKAEDVAL---NEQVKKFFLNNVVD 228
Score = 47.1 bits (110), Expect = 1e-06
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 125 LREASCLGDFEAVCELV-SKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHG 178
L +A +F V EL+ SK + + D +G LHW+ +I S+LL
Sbjct: 4 LHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKM 57
Score = 41.0 bits (94), Expect = 2e-04
Identities = 8/42 (19%), Positives = 11/42 (26%), Gaps = 1/42 (2%)
Query: 157 TALHWAAKRGQKDIVSYLLK-HGADKSLLTSKEETPLALATK 197
LH A + V LL + PL +
Sbjct: 2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS 43
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 48.0 bits (112), Expect = 2e-07
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 130 CLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHG 178
G V LV + G TA A G+ ++VS + +G
Sbjct: 108 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156
Score = 43.3 bits (100), Expect = 1e-05
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 157 TALHWAAKRGQKDIVSYLLKHGAD 180
L AA RG + ++ LL++ +
Sbjct: 3 NELASAAARGDLEQLTSLLQNNVN 26
Score = 34.1 bits (76), Expect = 0.015
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHW 161
L A+ GD E + L+ +++NAQ + G TAL
Sbjct: 5 LASAAARGDLEQLTSLLQNNVNVNAQ-NGFGRTALQV 40
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
sapiens) [TaxId: 9606]}
Length = 156
Score = 47.1 bits (110), Expect = 5e-07
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 146 DINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
D++ + D G T L A +RG +D+V L H
Sbjct: 125 DLHRR-DARGLTPLELALQRGAQDLVDILQGH 155
Score = 32.5 bits (72), Expect = 0.053
Identities = 10/38 (26%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 155 GWTALHWAAKRGQKDIVSYLL-KHGADKSLLTSKEETP 191
L AA RG V LL + L +T
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA 39
Score = 31.3 bits (69), Expect = 0.11
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 123 EQLREASCLGDFEAVCELV-SKGIDINAQHDMNGWTALHW 161
++L A+ GD + V L+ + + +A + G TAL
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQV 42
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 47.6 bits (111), Expect = 8e-07
Identities = 31/70 (44%), Positives = 37/70 (52%)
Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
AS G V LVS G D+NAQ NG TALH A D+VS LLK GAD + +T +
Sbjct: 118 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 177
Query: 188 EETPLALATK 197
+P L
Sbjct: 178 GYSPYQLTWG 187
Score = 45.7 bits (106), Expect = 4e-06
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 154 NGWTALHWAAKRGQ----KDIVSYLLKHGADKSLLTSKEETPLALATKP 198
+G + LH A + +++ + A + + ++TPL LA
Sbjct: 1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT 49
Score = 34.1 bits (76), Expect = 0.024
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 125 LREASCLGDFEAVCELV----SKGIDINAQHDMNGWTALHWA 162
L A + E++ +N Q + T LH A
Sbjct: 6 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLA 46
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 153
Score = 45.6 bits (106), Expect = 2e-06
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 111 GVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDI 170
G + L A+ E V L+ G D++ Q TA + G +D+
Sbjct: 90 GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ-SKFCKTAFDISIDNGNEDL 148
Query: 171 VSYL 174
L
Sbjct: 149 AEIL 152
Score = 39.8 bits (91), Expect = 2e-04
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
D+ L AA+ GQ D V L+ +GA
Sbjct: 1 DLG--KKLLEAARAGQDDEVRILMANGAP 27
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 130
Score = 44.3 bits (103), Expect = 3e-06
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 2/42 (4%)
Query: 140 LVSKGIDINAQHDMNGWTA--LHWAAKRGQKDIVSYLLKHGA 179
LV G + A + TA + G +L
Sbjct: 86 LVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 127
Score = 33.9 bits (76), Expect = 0.012
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 157 TALHWAAKRGQKDIVSYLLKHGA 179
L ++ G+ D+V ++
Sbjct: 3 ALLLDSSLEGEFDLVQRIIYEVD 25
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 39.2 bits (89), Expect = 2e-04
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 150 QHDMNGWTALHWAAKRGQKDIVSYLL 175
D G + A + G +D+ YL
Sbjct: 97 VRDAWGRLPVDLAEELGHRDVARYLR 122
Score = 38.0 bits (86), Expect = 5e-04
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 155 GWTALHWAAKRGQKDIVSYLLKHGA 179
L AA RG+ + V LL+ GA
Sbjct: 3 SADWLATAAARGRVEEVRALLEAGA 27
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 118
Score = 33.0 bits (73), Expect = 0.024
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 157 TALHWAAKRGQKDIVSYLLKH 177
WA K G D V +
Sbjct: 4 KEFMWALKNGDLDEVKDYVAK 24
Score = 27.9 bits (60), Expect = 1.2
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 4/25 (16%)
Query: 152 DMNGWTALHWAAKRGQKDIVSYLLK 176
+G TAL + LL+
Sbjct: 98 GPDGLTALEATD----NQAIKALLQ 118
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain
{Escherichia coli, gene ddlB [TaxId: 562]}
Length = 210
Score = 26.6 bits (57), Expect = 5.8
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 14 DMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKI 54
D D F +E N +T +SL+ + ++ + Q +++I
Sbjct: 165 DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 205
Score = 26.6 bits (57), Expect = 5.8
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 315 DMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKI 355
D D F +E N +T +SL+ + ++ + Q +++I
Sbjct: 165 DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 205
>d1vr0a1 c.148.1.1 (A:1-235) 2-phosphosulfolactate phosphatase ComB
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 235
Score = 26.0 bits (57), Expect = 9.1
Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 35/129 (27%)
Query: 171 VSYLLKHGADKSLLTSKEETPLALATKPEVRILLGGEP-GVTINTADLPIVPNYIKNEPL 229
++ L +G + + E L + +LGGE G+ I D N P+
Sbjct: 34 ITTALNNGCKRVVPVLTVEEALKKVKEYGKDAILGGERKGLKIEGFDFS-------NSPM 86
Query: 230 DPRVNDYQVSNQNRTHQTNPVTANQNVVTTSHHSIVNHSTTN-TPAQLDGKSADVVTTSH 288
+ T V + ++ +TTN T A ++A +
Sbjct: 87 E---------------YTEDVVKGKTLI---------MTTTNGTRAIKGSETARDILIG- 121
Query: 289 HSIVNHSTA 297
S++N
Sbjct: 122 -SVLNGEAV 129
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.383
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,678,951
Number of extensions: 77306
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 84
Length of query: 464
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 376
Effective length of database: 1,199,356
Effective search space: 450957856
Effective search space used: 450957856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.4 bits)