BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6442
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 74/183 (40%), Gaps = 27/183 (14%)
Query: 18 IGTFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWDVSASAEVQK 77
+ T GH VWGV F T + S ++DKTV+LW+ +
Sbjct: 337 LQTLTGHSSSVWGV--------------AFSPDGQT-IASASDDKTVKLWNRNGQLLQTL 381
Query: 78 LEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQV---HSASLLLNSE 134
+ + S DG TI + D +++L + Q HS+S+ +
Sbjct: 382 TGHSSSVRGVAFSPDGQTI-------ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF 434
Query: 135 RP--IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLW 192
P + D K K G +++ GH + V FSPDG+ AS S+D T++LW
Sbjct: 435 SPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494
Query: 193 QTN 195
N
Sbjct: 495 NRN 497
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 27/186 (14%)
Query: 15 GDWIGTFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWDVSASAE 74
G + T GH VWGV F T + S ++DKTV+LW+ +
Sbjct: 47 GQLLQTLTGHSSSVWGV--------------AFSPDGQT-IASASDDKTVKLWNRNGQLL 91
Query: 75 VQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQV---HSASLLL 131
+ + S DG TI + D +++L + Q HS+S+
Sbjct: 92 QTLTGHSSSVRGVAFSPDGQTI-------ASASDDKTVKLWNRNGQLLQTLTGHSSSVWG 144
Query: 132 NSERP--IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTL 189
+ P + D K K G +++ GH + V FSPDG+ AS S+D T+
Sbjct: 145 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 204
Query: 190 RLWQTN 195
+LW N
Sbjct: 205 KLWNRN 210
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 74/183 (40%), Gaps = 27/183 (14%)
Query: 15 GDWIGTFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWDVSASAE 74
G + T GH VWGV F + T + S ++DKTV+LW+ +
Sbjct: 416 GQLLQTLTGHSSSVWGV--------------AFSPDDQT-IASASDDKTVKLWNRNGQLL 460
Query: 75 VQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQV---HSASLLL 131
+ + S DG TI + D +++L + Q HS+S+
Sbjct: 461 QTLTGHSSSVRGVAFSPDGQTI-------ASASDDKTVKLWNRNGQLLQTLTGHSSSVRG 513
Query: 132 NSERP--IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTL 189
+ P + D K K G +++ GH + V FSPDG+ AS S D T+
Sbjct: 514 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTV 573
Query: 190 RLW 192
+LW
Sbjct: 574 KLW 576
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 86/220 (39%), Gaps = 54/220 (24%)
Query: 15 GDWIGTFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWDVSA--- 71
G + T GH VWGV F T + S ++DKTV+LW+ +
Sbjct: 170 GQLLQTLTGHSSSVWGV--------------AFSPDGQT-IASASDDKTVKLWNRNGQLL 214
Query: 72 ------SAEVQKLEFGAVPNSLEISRDGTTI-----------TVT-HGSCV--------- 104
S+ V+ + F ++ + D T+ T+T H S V
Sbjct: 215 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDG 274
Query: 105 -TFLDANSLELIKEHKVPAQV------HSASLLLNSERP--IFVCGGEDLKMYKFDYSTG 155
T A+ + +K Q+ HS+S+ + P + D K K G
Sbjct: 275 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 334
Query: 156 AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN 195
+++ GH + V FSPDG+ AS S+D T++LW N
Sbjct: 335 QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 374
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 8/144 (5%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTI-TVTHGSCVTFLDANSLE 113
+ S ++DKTV+LW+ + + + S DG TI + + V + N
Sbjct: 277 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-- 334
Query: 114 LIKEHKVPAQVHSASLLLNSERP--IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCV 171
+H HS+S+ + P + D K K G +++ GH + V
Sbjct: 335 ---QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV 391
Query: 172 KFSPDGELYASGSEDGTLRLWQTN 195
FSPDG+ AS S+D T++LW N
Sbjct: 392 AFSPDGQTIASASDDKTVKLWNRN 415
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 12/146 (8%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
+ S ++DKTV+LW+ + + + S DG TI + D +++L
Sbjct: 31 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTI-------ASASDDKTVKL 83
Query: 115 IKEHKVPAQV---HSASLLLNSERP--IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIH 169
+ Q HS+S+ + P + D K K G +++ GH +
Sbjct: 84 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 143
Query: 170 CVKFSPDGELYASGSEDGTLRLWQTN 195
V FSPDG+ AS S+D T++LW N
Sbjct: 144 GVAFSPDGQTIASASDDKTVKLWNRN 169
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 157 EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN 195
E + H + V FSPDG+ AS S+D T++LW N
Sbjct: 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 46
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 15/54 (27%)
Query: 15 GDWIGTFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWD 68
G + T GH VWGV F T + S + DKTV+LW+
Sbjct: 539 GQLLQTLTGHSSSVWGV--------------AFSPDGQT-IASASSDKTVKLWN 577
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 20/158 (12%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAV-------PNSLEI-------SRDGTTITVTH 100
L SC+ D T+RLWDV ++ E + + P +E+ S DG I V
Sbjct: 758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 817
Query: 101 GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMY---KFDYSTGAE 157
+ V D ++ L+ E H +++ P L Y ++ + +
Sbjct: 818 KNKVLLFDIHTSGLLAEIHTG---HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK 874
Query: 158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN 195
+ +GH +H V FSPDG + + S+D T+R+W+T
Sbjct: 875 VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 49 AKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEI----SRDGTTITVTHGSCV 104
+++ R+ SC DKT++++ ++ L+ A + + S D T + V
Sbjct: 624 SQDGQRIASCGADKTLQVFKAETGEKL--LDIKAHEDEVLCCAFSSDDSYIATCSADKKV 681
Query: 105 TFLDANSLELIKEH-KVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG 163
D+ + +L+ + + QV+ S + G D + +D + + G
Sbjct: 682 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG 741
Query: 164 HFGPIHCVKFSPDGELYASGSEDGTLRLW 192
H ++ +FSPD EL AS S DGTLRLW
Sbjct: 742 HTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 41/152 (26%)
Query: 47 FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTF 106
F+ ++RL+S + D TV++W+V I RD T T SC
Sbjct: 1050 FRLLQDSRLLSWSFDGTVKVWNVITG---------------RIERDFTCHQGTVLSCAIS 1094
Query: 107 LDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFG 166
DA K K++ FD + + KGH G
Sbjct: 1095 SDATKFSSTSADKTA------------------------KIWSFDLLS--PLHELKGHNG 1128
Query: 167 PIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ C FS DG L A+G ++G +R+W + G+
Sbjct: 1129 CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 142 GEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
G D + F TG ++ K H + C FS D A+ S D +++W + GK
Sbjct: 634 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK 690
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 49 AKNNTRLISCAEDKTVRLWDVSA----SAEVQKLEFGAVPNSLEISRDGTTITVTHGSCV 104
+ + + ++ ++D+T+R+W+ SA V K E V E + V + +
Sbjct: 891 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENET----MVLAVDNIRGL 946
Query: 105 TFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGH 164
+ + ++ ++ AQV L + E F G ED + + S GH
Sbjct: 947 QLIAGKTGQI--DYLPEAQVSCCCLSPHLEYVAF--GDEDGAIKIIELPNNRVFSSGVGH 1002
Query: 165 FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG 197
+ ++F+ DG+ S SED +++W G
Sbjct: 1003 KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 137 IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE--LYASGSEDGTLRLWQT 194
I C D K+ +D +TG + ++ H ++C F+ L A+GS D L+LW
Sbjct: 672 IATCSA-DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 730
Query: 195 N 195
N
Sbjct: 731 N 731
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 20/158 (12%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAV-------PNSLEI-------SRDGTTITVTH 100
L SC+ D T+RLWDV ++ E + + P +E+ S DG I V
Sbjct: 765 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 824
Query: 101 GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMY---KFDYSTGAE 157
+ V D ++ L+ E H +++ P L Y ++ + +
Sbjct: 825 KNKVLLFDIHTSGLLAEIHTG---HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK 881
Query: 158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN 195
+ +GH +H V FSPDG + + S+D T+R+W+T
Sbjct: 882 VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 919
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 49 AKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEI----SRDGTTITVTHGSCV 104
+++ R+ SC DKT++++ ++ L+ A + + S D T + V
Sbjct: 631 SQDGQRIASCGADKTLQVFKAETGEKL--LDIKAHEDEVLCCAFSSDDSYIATCSADKKV 688
Query: 105 TFLDANSLELIKEH-KVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG 163
D+ + +L+ + + QV+ S + G D + +D + + G
Sbjct: 689 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG 748
Query: 164 HFGPIHCVKFSPDGELYASGSEDGTLRLW 192
H ++ +FSPD EL AS S DGTLRLW
Sbjct: 749 HTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 41/152 (26%)
Query: 47 FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTF 106
F+ ++RL+S + D TV++W+V I RD T T SC
Sbjct: 1057 FRLLQDSRLLSWSFDGTVKVWNVITG---------------RIERDFTCHQGTVLSCAIS 1101
Query: 107 LDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFG 166
DA K K++ FD + + KGH G
Sbjct: 1102 SDATKFSSTSADKTA------------------------KIWSFDLLS--PLHELKGHNG 1135
Query: 167 PIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ C FS DG L A+G ++G +R+W + G+
Sbjct: 1136 CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1167
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 142 GEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
G D + F TG ++ K H + C FS D A+ S D +++W + GK
Sbjct: 641 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK 697
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 49 AKNNTRLISCAEDKTVRLWDVSA----SAEVQKLEFGAVPNSLEISRDGTTITVTHGSCV 104
+ + + ++ ++D+T+R+W+ SA V K E V E + V + +
Sbjct: 898 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENET----MVLAVDNIRGL 953
Query: 105 TFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGH 164
+ + ++ ++ AQV L + E F G ED + + S GH
Sbjct: 954 QLIAGKTGQI--DYLPEAQVSCCCLSPHLEYVAF--GDEDGAIKIIELPNNRVFSSGVGH 1009
Query: 165 FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG 197
+ ++F+ DG+ S SED +++W G
Sbjct: 1010 KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1042
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 137 IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE--LYASGSEDGTLRLWQT 194
I C D K+ +D +TG + ++ H ++C F+ L A+GS D L+LW
Sbjct: 679 IATCSA-DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 737
Query: 195 N 195
N
Sbjct: 738 N 738
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 55/194 (28%)
Query: 20 TFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE 79
TFEGH+ V V F K+ + S D+TV++W + S
Sbjct: 135 TFEGHEHFVMCV--------------AFNPKDPSTFASGCLDRTVKVWSLGQST------ 174
Query: 80 FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFV 139
PN T+T V ++D L ++P +
Sbjct: 175 ----PN--------FTLTTGQERGVNYVDYYPL--------------------PDKPYMI 202
Query: 140 CGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT 199
+DL + +DY T + + + +GH + F P + SGSEDGTL++W ++ T
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS---T 259
Query: 200 YGLWKCIEGGLNNS 213
Y + K + GL S
Sbjct: 260 YKVEKTLNVGLERS 273
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 139 VCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ G +D ++ F+Y+TG ++ F+ H I + P SGS+D T++LW N
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW--NWEN 128
Query: 199 TYGLWKCIEG 208
+ L + EG
Sbjct: 129 NWALEQTFEG 138
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 5/133 (3%)
Query: 64 VRLWDVSASAEVQKLEFGAVPNSLE--ISRDGTTITVTHGSCVTFLDANSLELIKEHKVP 121
V +W+ EV+ ++ P I+R I + + + N+ E + + +
Sbjct: 37 VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 122 AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE-SFKGHFGPIHCVKFSP-DGEL 179
+ S+ ++ +P + G +DL + +++ +E +F+GH + CV F+P D
Sbjct: 97 PD-YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 180 YASGSEDGTLRLW 192
+ASG D T+++W
Sbjct: 156 FASGCLDRTVKVW 168
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 55/194 (28%)
Query: 20 TFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE 79
TFEGH+ V V F K+ + S D+TV++W + S
Sbjct: 135 TFEGHEHFVMCV--------------AFNPKDPSTFASGCLDRTVKVWSLGQST------ 174
Query: 80 FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFV 139
PN T+T V ++D L ++P +
Sbjct: 175 ----PN--------FTLTTGQERGVNYVDYYPL--------------------PDKPYMI 202
Query: 140 CGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT 199
+DL + +DY T + + + +GH + F P + SGSEDGTL++W ++ T
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS---T 259
Query: 200 YGLWKCIEGGLNNS 213
Y + K + GL S
Sbjct: 260 YKVEKTLNVGLERS 273
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 5/133 (3%)
Query: 64 VRLWDVSASAEVQKLEFGAVPNSL--EISRDGTTITVTHGSCVTFLDANSLELIKEHKVP 121
V LW+ EV+ ++ P I+R I + + + N+ E + + +
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 122 AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE-SFKGHFGPIHCVKFSP-DGEL 179
+ S+ ++ +P + G +DL + +++ +E +F+GH + CV F+P D
Sbjct: 97 PD-YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 180 YASGSEDGTLRLW 192
+ASG D T+++W
Sbjct: 156 FASGCLDRTVKVW 168
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 139 VCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ G +D ++ F+Y+TG ++ F+ H I + P SGS+D T++LW N
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW--NWEN 128
Query: 199 TYGLWKCIEG 208
+ L + EG
Sbjct: 129 NWALEQTFEG 138
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 55/194 (28%)
Query: 20 TFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE 79
TFEGH+ V V F K+ + S D+TV++W + S
Sbjct: 135 TFEGHEHFVMCV--------------AFNPKDPSTFASGCLDRTVKVWSLGQST------ 174
Query: 80 FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFV 139
PN T+T V ++D L ++P +
Sbjct: 175 ----PNF--------TLTTGQERGVNYVDYYPL--------------------PDKPYMI 202
Query: 140 CGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT 199
+DL + +DY T + + + +GH + F P + SGSEDGTL++W ++ T
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS---T 259
Query: 200 YGLWKCIEGGLNNS 213
Y + K + GL S
Sbjct: 260 YKVEKTLNVGLERS 273
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 5/133 (3%)
Query: 64 VRLWDVSASAEVQKLEFGAVPNSL--EISRDGTTITVTHGSCVTFLDANSLELIKEHKVP 121
V LW+ EV+ ++ P I+R I + + + N+ E + + +
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 122 AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE-SFKGHFGPIHCVKFSP-DGEL 179
+ S+ ++ +P + G +DL + +++ +E +F+GH + CV F+P D
Sbjct: 97 PD-YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 180 YASGSEDGTLRLW 192
+ASG D T+++W
Sbjct: 156 FASGCLDRTVKVW 168
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 139 VCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ G +D ++ F+Y+TG ++ F+ H I + P SGS+D T++LW N
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW--NWEN 128
Query: 199 TYGLWKCIEG 208
+ L + EG
Sbjct: 129 NWALEQTFEG 138
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 55/194 (28%)
Query: 20 TFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE 79
TFEGH+ V V F K+ + S D+TV++W + S
Sbjct: 135 TFEGHEHFVMCV--------------AFNPKDPSTFASGCLDRTVKVWSLGQST------ 174
Query: 80 FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFV 139
PN T+T V ++D L ++P +
Sbjct: 175 ----PNF--------TLTTGQERGVNYVDYYPL--------------------PDKPYMI 202
Query: 140 CGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT 199
+DL + +DY T + + + +GH + F P + SGSEDGTL++W ++ T
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS---T 259
Query: 200 YGLWKCIEGGLNNS 213
Y + K + GL S
Sbjct: 260 YKVEKTLNVGLERS 273
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 5/133 (3%)
Query: 64 VRLWDVSASAEVQKLEFGAVPNSL--EISRDGTTITVTHGSCVTFLDANSLELIKEHKVP 121
V LW+ EV+ ++ P I+R I + + + N+ E + + +
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 122 AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE-SFKGHFGPIHCVKFSP-DGEL 179
+ S+ ++ +P + G +DL + +++ +E +F+GH + CV F+P D
Sbjct: 97 PD-YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 180 YASGSEDGTLRLW 192
+ASG D T+++W
Sbjct: 156 FASGCLDRTVKVW 168
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 139 VCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ G +D ++ F+Y+TG ++ F+ H I + P SGS+D T++LW N
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW--NWEN 128
Query: 199 TYGLWKCIEG 208
+ L + EG
Sbjct: 129 NWALEQTFEG 138
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Query: 57 SCAEDKTVRLWDVSASAEVQKLEFGAVPN-SLEISRDGTTI-TVTHGSCVTFLDANSLEL 114
S + D +RLWD+ +++ ++ G V +L S D + T TH V S +
Sbjct: 97 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK- 155
Query: 115 IKEHKVPAQ-VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKF 173
KE+ + + S+ + + G D + FD +TG + + +GH PI + F
Sbjct: 156 -KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTF 214
Query: 174 SPDGELYASGSEDGTLRLW 192
SPD +L + S+DG ++++
Sbjct: 215 SPDSQLLVTASDDGYIKIY 233
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 123 QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHC--VKFSPDGELY 180
Q+ S+ ++ PI D + +D G +I+S GP+ + FSPD +
Sbjct: 80 QLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA--GPVDAWTLAFSPDSQYL 137
Query: 181 ASGSEDGTLRLWQTNVGK 198
A+G+ G + ++ GK
Sbjct: 138 ATGTHVGKVNIFGVESGK 155
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%)
Query: 124 VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASG 183
V + +L + + G K+ F +G + S I + +SPDG+ ASG
Sbjct: 123 VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182
Query: 184 SEDGTLRLWQTNVGK 198
+ DG + ++ GK
Sbjct: 183 AIDGIINIFDIATGK 197
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 36/146 (24%)
Query: 53 TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSL 112
TRLI+ + D+T LWDV+ IS G+ H + V L NSL
Sbjct: 171 TRLITGSGDQTCVLWDVTTGQR--------------ISIFGSEFPSGHTADVLSLSINSL 216
Query: 113 ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYS-TGAEIESFKGHFGPIHCV 171
+F+ G D + +D T + ++ GH G I+ V
Sbjct: 217 NA---------------------NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV 255
Query: 172 KFSPDGELYASGSEDGTLRLWQTNVG 197
KF PDG+ + +GS+DGT RL+ G
Sbjct: 256 KFFPDGQRFGTGSDDGTCRLFDMRTG 281
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 13/155 (8%)
Query: 51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFG--AVPNSLEISRDGTTITV--THGSCVTF 106
N IS + D TVRLWD+ ++ + G NS++ DG G+C F
Sbjct: 217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF 276
Query: 107 LDANSLELIKEHKVPAQVHS-----ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESF 161
+L ++ P + + S+ + + G + Y +D + +
Sbjct: 277 DMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL 336
Query: 162 ----KGHFGPIHCVKFSPDGELYASGSEDGTLRLW 192
H G I C+ S DG +GS D L++W
Sbjct: 337 GTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 159 ESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLW 192
+ +GH G ++ + ++P+ S S+DG L +W
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVW 93
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 8/149 (5%)
Query: 56 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSC-VTFLDANSLEL 114
+S + D T+RLWD++ ++ G + L ++ + GS T N+L +
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV 160
Query: 115 IKEHKVPAQVHS-----ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIH 169
K + V + HS NS PI V G D + ++ + + GH G ++
Sbjct: 161 CK-YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLN 219
Query: 170 CVKFSPDGELYASGSEDGTLRLWQTNVGK 198
V SPDG L ASG +DG LW N GK
Sbjct: 220 TVTVSPDGSLCASGGKDGQAMLWDLNEGK 248
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 115 IKEHKVPAQVHSAS-LLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKF 173
I + + H S ++++S+ + G D + +D +TG F GH + V F
Sbjct: 77 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 136
Query: 174 SPDGELYASGSEDGTLRLWQT 194
S D SGS D T++LW T
Sbjct: 137 SSDNRQIVSGSRDKTIKLWNT 157
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 146 KMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT 199
K+ + + + G + +GH + V S DG+ SGS DGTLRLW G T
Sbjct: 67 KLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT 120
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 8/149 (5%)
Query: 56 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSC-VTFLDANSLEL 114
+S + D T+RLWD++ ++ G + L ++ + GS T N+L +
Sbjct: 79 LSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV 137
Query: 115 IKEHKVPAQVHS-----ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIH 169
K + V + HS NS PI V G D + ++ + + GH G ++
Sbjct: 138 CK-YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLN 196
Query: 170 CVKFSPDGELYASGSEDGTLRLWQTNVGK 198
V SPDG L ASG +DG LW N GK
Sbjct: 197 TVTVSPDGSLCASGGKDGQAMLWDLNEGK 225
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 115 IKEHKVPAQVHSAS-LLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKF 173
I + + H S ++++S+ + G D + +D +TG F GH + V F
Sbjct: 54 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 113
Query: 174 SPDGELYASGSEDGTLRLWQT 194
S D SGS D T++LW T
Sbjct: 114 SSDNRQIVSGSRDKTIKLWNT 134
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 146 KMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT 199
K+ + + + G + +GH + V S DG+ SGS DGTLRLW G T
Sbjct: 44 KLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT 97
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 134 ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ 193
+ P+ V GG D + +D +TG + KGH + V SPDG L AS +DG RLW
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Query: 194 TNVGK 198
G+
Sbjct: 225 LTKGE 229
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 121 PAQVHSASLLLNSER-PIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGEL 179
P +A+ ++++ R + G + + + S G +GH + V S +G
Sbjct: 22 PQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNF 81
Query: 180 YASGSEDGTLRLWQTNVGK 198
S S D +LRLW G+
Sbjct: 82 AVSASWDHSLRLWNLQNGQ 100
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 14/160 (8%)
Query: 49 AKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLE--------------ISRDGT 94
+ ++ L SC+ D T++LWD +++ E + + +LE S DG
Sbjct: 758 SPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGA 817
Query: 95 TITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYST 154
I V + + D ++ L+ E + + + V + ++ +
Sbjct: 818 RIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDS 877
Query: 155 GAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT 194
+++ +GH +H V FSPDG + + S+D T+RLW+T
Sbjct: 878 RSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET 917
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 7/149 (4%)
Query: 49 AKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSL---EISRDGTTI-TVTHGSCV 104
+++ R+ SC DKT++++ ++ LE A + + S D I T + V
Sbjct: 630 SEDGQRIASCGADKTLQVFKAETGEKL--LEIKAHEDEVLCCAFSTDDRFIATCSVDKKV 687
Query: 105 TFLDANSLELIKEH-KVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG 163
++ + EL+ + + QV+ +S + G D + +D + + G
Sbjct: 688 KIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFG 747
Query: 164 HFGPIHCVKFSPDGELYASGSEDGTLRLW 192
H ++ +FSPD +L AS S DGTL+LW
Sbjct: 748 HTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 43/157 (27%)
Query: 47 FQAKNNTRLISCAEDKTVRLWDV-SASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVT 105
F+ N+RL+S + D TV++W++ + + E + S +IS D T + T
Sbjct: 1056 FRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSAD--- 1112
Query: 106 FLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHF 165
A++ S LLL + +GH
Sbjct: 1113 --------------KTAKIWSFDLLL-------------------------PLHELRGHN 1133
Query: 166 GPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL 202
G + C FS D L A+G ++G +R+W + G+ L
Sbjct: 1134 GCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHL 1170
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 34/81 (41%)
Query: 142 GEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYG 201
G D + F TG ++ K H + C FS D A+ S D +++W + G+
Sbjct: 640 GADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVH 699
Query: 202 LWKCIEGGLNNSLGLDSSGHL 222
+ +N +SS HL
Sbjct: 700 TYDEHSEQVNCCHFTNSSHHL 720
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 134 ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE--LYASGSEDGTLRL 191
+R I C D K+ ++ TG + ++ H ++C F+ L A+GS D L+L
Sbjct: 675 DRFIATCSV-DKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKL 733
Query: 192 WQTN 195
W N
Sbjct: 734 WDLN 737
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/158 (18%), Positives = 67/158 (42%), Gaps = 12/158 (7%)
Query: 49 AKNNTRLISCAEDKTVRLWDVSA----SAEVQKLEFGAVPNSLEISRDGTTITVTHGSCV 104
+ + + ++ ++D+T+RLW+ SA + K E V E+ + V H +
Sbjct: 897 SPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEV----MVLAVDHIRRL 952
Query: 105 TFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGH 164
++ + ++ ++ AQV L + + F G E+ + + +S H
Sbjct: 953 QLINGRTGQI--DYLTEAQVSCCCLSPHLQYIAF--GDENGAIEILELVNNRIFQSRFQH 1008
Query: 165 FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL 202
+ ++F+ D + S S+D +++W + K L
Sbjct: 1009 KKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFL 1046
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 101 GSCVTFLDANSLELIKE-HKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE 159
G+C + D S +L++ H A V L + FV GG D K +D +G ++
Sbjct: 176 GTCALW-DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234
Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW 203
+F+ H ++ V++ P G+ +ASGS+D T RL+ + ++
Sbjct: 235 AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY 278
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 16/192 (8%)
Query: 4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKT 63
DG L ++G + +F GH V +D+ ++ +S DK
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLA-------------PSETGNTFVSGGCDKK 221
Query: 64 VRLWDVSASAEVQKLE-FGAVPNSLEI--SRDGTTITVTHGSCVTFLDANSLELIKEHKV 120
+WD+ + VQ E + NS+ S D +C + E+ K
Sbjct: 222 AMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE 281
Query: 121 PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELY 180
++S+ + + G D + +D G+ + GH + ++ SPDG +
Sbjct: 282 SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAF 341
Query: 181 ASGSEDGTLRLW 192
SGS D TLR+W
Sbjct: 342 CSGSWDHTLRVW 353
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 25/157 (15%)
Query: 55 LISCAEDKTVRLWDVSASAE-VQKLEFGAVPNS-LEISRDGTTITVTHGSCVTFL-DANS 111
+I+ +D + +DVS + E V ++ S ++ S D T + +FL D ++
Sbjct: 190 IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST 249
Query: 112 LELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA--------------- 156
L+++K+++ +++A + E I + GG++ K D +T +
Sbjct: 250 LQVLKKYETDCPLNTAVITPLKEF-IILGGGQEAK----DVTTTSANEGKFEARFYHKIF 304
Query: 157 --EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
EI +GHFGP++ V SP G YASG EDG +RL
Sbjct: 305 EEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 38/193 (19%)
Query: 15 GDWIGTFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWDVS---- 70
G+ +GT +GH G +W +D++ ++ + D +++LWDVS
Sbjct: 64 GERLGTLDGHTGTIWSIDVDCF---------------TKYCVTGSADYSIKLWDVSNGQC 108
Query: 71 -----ASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTF---LDANSLELIKEHKVPA 122
+ V+++EF N D + GS + D+ + EL K + P
Sbjct: 109 VATWKSPVPVKRVEFSPCGNYFLAILDN--VMKNPGSINIYEIERDSATHELTKVSEEPI 166
Query: 123 Q-------VHSASLLLNSERPIFVCGG-EDLKMYKFDYSTGAE-IESFKGHFGPIHCVKF 173
+ +A++ S + ++ G +D K+ K+D S E ++S H I ++F
Sbjct: 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQF 226
Query: 174 SPDGELYASGSED 186
SPD + + S D
Sbjct: 227 SPDLTYFITSSRD 239
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 152 YSTGAEIESFK--GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYG 201
Y G+ +++ K GH P+ VK++ +G+L S S+D + +W + G+ G
Sbjct: 17 YFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG 68
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSC---VTFLDANS 111
++S +ED T+++WD + + ++ G + +IS D + + S + D
Sbjct: 123 MVSASEDATIKVWDYE-TGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181
Query: 112 LELIKE-HKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHC 170
E I+ H V S S++ N + + + +KM+ + TG +++F GH +
Sbjct: 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW--EVQTGYCVKTFTGHREWVRM 239
Query: 171 VKFSPDGELYASGSEDGTLRLW 192
V+ + DG L AS S D T+R+W
Sbjct: 240 VRPNQDGTLIASCSNDQTVRVW 261
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 72/179 (40%), Gaps = 36/179 (20%)
Query: 14 TGDWIGTFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWDVSASA 73
TG + TF GH+ V V N ++ T + SC+ D+TVR+W V A+
Sbjct: 223 TGYCVKTFTGHREWVRMVRPN---------------QDGTLIASCSNDQTVRVW-VVATK 266
Query: 74 EVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNS 133
E K E + +E C+++ +S I E S +
Sbjct: 267 EC-KAELREHRHVVE--------------CISWAPESSYSSISE-----ATGSETKKSGK 306
Query: 134 ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLW 192
P + G D + +D STG + + GH + V F G+ S ++D TLR+W
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 136 PIF---VCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLW 192
P+F V ED + +DY TG + KGH + + F G+L AS S D T++LW
Sbjct: 118 PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 144 DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG 197
D+ + +D+ I + GH + V P+G+ S S D T+++W+ G
Sbjct: 171 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 224
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 157 EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG 197
E + GH P+ V F P + S SED T+++W G
Sbjct: 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG 140
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 14/14 (100%)
Query: 55 LISCAEDKTVRLWD 68
++SCA+DKT+R+WD
Sbjct: 353 ILSCADDKTLRVWD 366
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
+S+ + V +D + +D S+G +++ KGH + C F+P L SGS D ++R+
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 192 WQTNVGK 198
W GK
Sbjct: 134 WDVKTGK 140
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
L+S ++DKT+++WDVS+ G C+ L +S +
Sbjct: 80 LVSASDDKTLKIWDVSS-----------------------------GKCLKTLKGHSNYV 110
Query: 115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
N + + V G D + +D TG +++ H P+ V F+
Sbjct: 111 F------------CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 175 PDGELYASGSEDGTLRLWQTNVGK 198
DG L S S DG R+W T G+
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTASGQ 182
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 47 FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTITVTH--GSC 103
F ++N ++S + D++VR+WDV ++ L + P +++ +RDG+ I + G C
Sbjct: 115 FNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Query: 104 VTFLDANSL---ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
+ A+ LI + P V N + + LK++ DYS G +++
Sbjct: 174 RIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKT 229
Query: 161 FKGHFGPIHCV--KFS-PDGELYASGSEDGTLRLWQ 193
+ GH +C+ FS G+ SGSED + +W
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ GH + VKFSP+GE AS S D +++W GK
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 56
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 138 FVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGS--EDGTLRLWQTN 195
V G ED +Y ++ T ++ +GH + P + AS + D T++LW+++
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
+S+ + V +D + +D S+G +++ KGH + C F+P L SGS D ++R+
Sbjct: 79 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 138
Query: 192 WQTNVGK 198
W GK
Sbjct: 139 WDVKTGK 145
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
L+S ++DKT+++WDVS+ G C+ L +S +
Sbjct: 85 LVSASDDKTLKIWDVSS-----------------------------GKCLKTLKGHSNYV 115
Query: 115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
N + + V G D + +D TG +++ H P+ V F+
Sbjct: 116 F------------CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 163
Query: 175 PDGELYASGSEDGTLRLWQTNVGK 198
DG L S S DG R+W T G+
Sbjct: 164 RDGSLIVSSSYDGLCRIWDTASGQ 187
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 47 FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTITVTH--GSC 103
F ++N ++S + D++VR+WDV ++ L + P +++ +RDG+ I + G C
Sbjct: 120 FNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 178
Query: 104 VTFLDANSL---ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
+ A+ LI + P V N + + LK++ DYS G +++
Sbjct: 179 RIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKT 234
Query: 161 FKGHFGPIHCV--KFS-PDGELYASGSEDGTLRLWQ 193
+ GH +C+ FS G+ SGSED + +W
Sbjct: 235 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 270
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ GH + VKFSP+GE AS S D +++W GK
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 61
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
+S+ + V +D + +D S+G +++ KGH + C F+P L SGS D ++R+
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 192 WQTNVGK 198
W GK
Sbjct: 140 WDVKTGK 146
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
L+S ++DKT+++WDVS+ G C+ L +S +
Sbjct: 86 LVSASDDKTLKIWDVSS-----------------------------GKCLKTLKGHSNYV 116
Query: 115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
N + + V G D + +D TG +++ H P+ V F+
Sbjct: 117 F------------CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 175 PDGELYASGSEDGTLRLWQTNVGK 198
DG L S S DG R+W T G+
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQ 188
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 47 FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTITVTH--GSC 103
F ++N ++S + D++VR+WDV ++ L + P +++ +RDG+ I + G C
Sbjct: 121 FNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 104 VTFLDANSL---ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
+ A+ LI + P V N + + LK++ DYS G +++
Sbjct: 180 RIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKT 235
Query: 161 FKGHFGPIHCV--KFS-PDGELYASGSEDGTLRLWQ 193
+ GH +C+ FS G+ SGSED + +W
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ GH + VKFSP+GE AS S D +++W GK
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 62
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
+S+ + V +D + +D S+G +++ KGH + C F+P L SGS D ++R+
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 192 WQTNVGK 198
W GK
Sbjct: 134 WDVKTGK 140
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
L+S ++DKT+++WDVS+ G C+ L +S +
Sbjct: 80 LVSASDDKTLKIWDVSS-----------------------------GKCLKTLKGHSNYV 110
Query: 115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
N + + V G D + +D TG +++ H P+ V F+
Sbjct: 111 F------------CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 175 PDGELYASGSEDGTLRLWQTNVGK 198
DG L S S DG R+W T G+
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTASGQ 182
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 47 FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTITVTH--GSC 103
F ++N ++S + D++VR+WDV ++ L + P +++ +RDG+ I + G C
Sbjct: 115 FNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Query: 104 VTFLDANSL---ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
+ A+ LI + P V N + + LK++ DYS G +++
Sbjct: 174 RIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKT 229
Query: 161 FKGHFGPIHCV--KFS-PDGELYASGSEDGTLRLWQ 193
+ GH +C+ FS G+ SGSED + +W
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ GH + VKFSP+GE AS S D +++W GK
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 56
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
+S+ + V +D + +D S+G +++ KGH + C F+P L SGS D ++R+
Sbjct: 70 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 192 WQTNVGK 198
W GK
Sbjct: 130 WDVKTGK 136
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
L+S ++DKT+++WDVS+ G C+ L +S +
Sbjct: 76 LVSASDDKTLKIWDVSS-----------------------------GKCLKTLKGHSNYV 106
Query: 115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
N + + V G D + +D TG +++ H P+ V F+
Sbjct: 107 F------------CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 154
Query: 175 PDGELYASGSEDGTLRLWQTNVGK 198
DG L S S DG R+W T G+
Sbjct: 155 RDGSLIVSSSYDGLCRIWDTASGQ 178
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 47 FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTITVTH--GSC 103
F ++N ++S + D++VR+WDV ++ L + P +++ +RDG+ I + G C
Sbjct: 111 FNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 169
Query: 104 VTFLDANSL---ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
+ A+ LI + P V N + + LK++ DYS G +++
Sbjct: 170 RIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKT 225
Query: 161 FKGHFGPIHCV--KFS-PDGELYASGSEDGTLRLWQ 193
+ GH +C+ FS G+ SGSED + +W
Sbjct: 226 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 261
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ GH + VKFSP+GE AS S D +++W GK
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 52
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
+S+ + V +D + +D S+G +++ KGH + C F+P L SGS D ++R+
Sbjct: 75 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 134
Query: 192 WQTNVGK 198
W GK
Sbjct: 135 WDVKTGK 141
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
L+S ++DKT+++WDVS+ G C+ L +S +
Sbjct: 81 LVSASDDKTLKIWDVSS-----------------------------GKCLKTLKGHSNYV 111
Query: 115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
N + + V G D + +D TG +++ H P+ V F+
Sbjct: 112 F------------CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 159
Query: 175 PDGELYASGSEDGTLRLWQTNVGK 198
DG L S S DG R+W T G+
Sbjct: 160 RDGSLIVSSSYDGLCRIWDTASGQ 183
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 47 FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTITVTH--GSC 103
F ++N ++S + D++VR+WDV ++ L + P +++ +RDG+ I + G C
Sbjct: 116 FNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 174
Query: 104 VTFLDANSL---ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
+ A+ LI + P V N + + LK++ DYS G +++
Sbjct: 175 RIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKT 230
Query: 161 FKGHFGPIHCV--KFS-PDGELYASGSEDGTLRLWQ 193
+ GH +C+ FS G+ SGSED + +W
Sbjct: 231 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 266
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ GH + VKFSP+GE AS S D +++W GK
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 57
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
+S+ + V +D + +D S+G +++ KGH + C F+P L SGS D ++R+
Sbjct: 73 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 132
Query: 192 WQTNVGK 198
W GK
Sbjct: 133 WDVKTGK 139
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
L+S ++DKT+++WDVS+ G C+ L +S +
Sbjct: 79 LVSASDDKTLKIWDVSS-----------------------------GKCLKTLKGHSNYV 109
Query: 115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
N + + V G D + +D TG +++ H P+ V F+
Sbjct: 110 F------------CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 157
Query: 175 PDGELYASGSEDGTLRLWQTNVGK 198
DG L S S DG R+W T G+
Sbjct: 158 RDGSLIVSSSYDGLCRIWDTASGQ 181
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 47 FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTITVTH--GSC 103
F ++N ++S + D++VR+WDV ++ L + P +++ +RDG+ I + G C
Sbjct: 114 FNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 172
Query: 104 VTFLDANSL---ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
+ A+ LI + P V N + + LK++ DYS G +++
Sbjct: 173 RIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKT 228
Query: 161 FKGHFGPIHCV--KFS-PDGELYASGSEDGTLRLWQ 193
+ GH +C+ FS G+ SGSED + +W
Sbjct: 229 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 264
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ GH + VKFSP+GE AS S D +++W GK
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 55
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
+S+ + V +D + +D S+G +++ KGH + C F+P L SGS D ++R+
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 192 WQTNVGK 198
W GK
Sbjct: 140 WDVKTGK 146
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
L+S ++DKT+++WDVS+ G C+ L +S +
Sbjct: 86 LVSASDDKTLKIWDVSS-----------------------------GKCLKTLKGHSNYV 116
Query: 115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
N + + V G D + +D TG +++ H P+ V F+
Sbjct: 117 F------------CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 175 PDGELYASGSEDGTLRLWQTNVGK 198
DG L S S DG R+W T G+
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQ 188
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 47 FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTITVTH--GSC 103
F ++N ++S + D++VR+WDV ++ L + P +++ +RDG+ I + G C
Sbjct: 121 FNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 104 VTFLDANSL---ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
+ A+ LI + P V N + + LK++ DYS G +++
Sbjct: 180 RIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKT 235
Query: 161 FKGHFGPIHCV--KFS-PDGELYASGSEDGTLRLWQ 193
+ GH +C+ FS G+ SGSED + +W
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ GH + VKFSP+GE AS S D +++W GK
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 62
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
+S+ + V +D + +D S+G +++ KGH + C F+P L SGS D ++R+
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 192 WQTNVGK 198
W GK
Sbjct: 137 WDVKTGK 143
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
L+S ++DKT+++WDVS+ G C+ L +S +
Sbjct: 83 LVSASDDKTLKIWDVSS-----------------------------GKCLKTLKGHSNYV 113
Query: 115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
N + + V G D + +D TG +++ H P+ V F+
Sbjct: 114 F------------CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 175 PDGELYASGSEDGTLRLWQTNVGK 198
DG L S S DG R+W T G+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQ 185
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 47 FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTITVTH--GSC 103
F ++N ++S + D++VR+WDV ++ L + P +++ +RDG+ I + G C
Sbjct: 118 FNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 104 VTFLDANSL---ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
+ A+ LI + P V N + + LK++ DYS G +++
Sbjct: 177 RIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKT 232
Query: 161 FKGHFGPIHCV--KFS-PDGELYASGSEDGTLRLWQ 193
+ GH +C+ FS G+ SGSED + +W
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ GH + VKFSP+GE A+ S D +++W GK
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGK 59
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 159 ESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
++ GH I V +S D L S S+D TL++W + GK
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 101
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
Query: 50 KNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP--NSLEISRDGTTI-TVTHGSCVTF 106
++ + ++S + D R+WD ++ ++ L P + ++ S +G I T + +
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 107 LDANSLELIKE---HKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG 163
D + + +K HK A+ + + I V G ED +Y ++ T ++ +G
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 164 HFGPIHCVKFSPDGELYASGS--EDGTLRLWQTN 195
H + P + AS + D T++LW+++
Sbjct: 281 HTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
+S+ + V +D + +D S+G +++ KGH + C F+P L SGS D ++R+
Sbjct: 91 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 192 WQTNVGK 198
W GK
Sbjct: 151 WDVKTGK 157
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
L+S ++DKT+++WDVS+ G C+ L +S +
Sbjct: 97 LVSASDDKTLKIWDVSS-----------------------------GKCLKTLKGHSNYV 127
Query: 115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
N + + V G D + +D TG +++ H P+ V F+
Sbjct: 128 F------------CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 175
Query: 175 PDGELYASGSEDGTLRLWQTNVGK 198
DG L S S DG R+W T G+
Sbjct: 176 RDGSLIVSSSYDGLCRIWDTASGQ 199
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 47 FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTITVTH--GSC 103
F ++N ++S + D++VR+WDV ++ L + P +++ +RDG+ I + G C
Sbjct: 132 FNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 190
Query: 104 VTFLDANSL---ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
+ A+ LI + P V N + + LK++ DYS G +++
Sbjct: 191 RIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKT 246
Query: 161 FKGHFGPIHCV--KFS-PDGELYASGSEDGTLRLWQ 193
+ GH +C+ FS G+ SGSED + +W
Sbjct: 247 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 282
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ GH + VKFSP+GE AS S D +++W GK
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 73
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
+S+ + V +D + +D S+G +++ KGH + C F+P L SGS D ++R+
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 192 WQTNVGK 198
W GK
Sbjct: 137 WDVKTGK 143
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
L+S ++DKT+++WDVS+ G C+ L +S +
Sbjct: 83 LVSASDDKTLKIWDVSS-----------------------------GKCLKTLKGHSNYV 113
Query: 115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
N + + V G D + +D TG +++ H P+ V F+
Sbjct: 114 F------------CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 175 PDGELYASGSEDGTLRLWQTNVGK 198
DG L S S DG R+W T G+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQ 185
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 47 FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTITVTH--GSC 103
F ++N ++S + D++VR+WDV ++ L + P +++ +RDG+ I + G C
Sbjct: 118 FNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 104 VTFLDANSL---ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
+ A+ LI + P V N + + LK++ DYS G +++
Sbjct: 177 RIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKT 232
Query: 161 FKGHFGPIHCV--KFS-PDGELYASGSEDGTLRLWQ 193
+ GH +C+ FS G+ SGSED + +W
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ GH + VKFSP+GE AS S D +++W GK
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 59
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
+S+ + V +D + +D S+G +++ KGH + C F+P L SGS D ++R+
Sbjct: 96 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 192 WQTNVGK 198
W GK
Sbjct: 156 WDVKTGK 162
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
L+S ++DKT+++WDVS+ G C+ L +S +
Sbjct: 102 LVSASDDKTLKIWDVSS-----------------------------GKCLKTLKGHSNYV 132
Query: 115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
N + + V G D + +D TG +++ H P+ V F+
Sbjct: 133 F------------CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 180
Query: 175 PDGELYASGSEDGTLRLWQTNVGK 198
DG L S S DG R+W T G+
Sbjct: 181 RDGSLIVSSSYDGLCRIWDTASGQ 204
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 14/155 (9%)
Query: 47 FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTITVTH--GSC 103
F ++N ++S + D++VR+WDV ++ L + P +++ +RDG+ I + G C
Sbjct: 137 FNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 195
Query: 104 VTFLDANSL---ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
+ A+ LI + P V N + + LK++ DYS G +++
Sbjct: 196 RIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKT 251
Query: 161 FKGHFGPIHCV--KFS-PDGELYASGSEDGTLRLW 192
+ GH +C+ FS G+ SGSED + +W
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ GH + VKFSP+GE AS S D +++W GK
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 78
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 138 FVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGS--EDGTLRLWQTN 195
V G ED +Y ++ T ++ +GH + P + AS + D T++LW+++
Sbjct: 274 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
+S+ + V +D + +D S+G +++ KGH + C F+P L SGS D ++R+
Sbjct: 98 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 157
Query: 192 WQTNVGK 198
W GK
Sbjct: 158 WDVKTGK 164
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
L+S ++DKT+++WDVS+ G C+ L +S +
Sbjct: 104 LVSASDDKTLKIWDVSS-----------------------------GKCLKTLKGHSNYV 134
Query: 115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
N + + V G D + +D TG +++ H P+ V F+
Sbjct: 135 F------------CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 182
Query: 175 PDGELYASGSEDGTLRLWQTNVGK 198
DG L S S DG R+W T G+
Sbjct: 183 RDGSLIVSSSYDGLCRIWDTASGQ 206
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 14/155 (9%)
Query: 47 FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTITVTH--GSC 103
F ++N ++S + D++VR+WDV ++ L + P +++ +RDG+ I + G C
Sbjct: 139 FNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 197
Query: 104 VTFLDANSL---ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
+ A+ LI + P V N + + LK++ DYS G +++
Sbjct: 198 RIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKT 253
Query: 161 FKGHFGPIHCV--KFS-PDGELYASGSEDGTLRLW 192
+ GH +C+ FS G+ SGSED + +W
Sbjct: 254 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 288
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ GH + VKFSP+GE AS S D +++W GK
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 80
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 138 FVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGS--EDGTLRLWQTN 195
V G ED +Y ++ T ++ +GH + P + AS + D T++LW+++
Sbjct: 276 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
+S+ + V +D + +D S+G +++ KGH + C F+P L SGS D ++R+
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 192 WQTNVGK 198
W GK
Sbjct: 137 WDVKTGK 143
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
L+S ++DKT+++WDVS+ G C+ L +S +
Sbjct: 83 LVSASDDKTLKIWDVSS-----------------------------GKCLKTLKGHSNYV 113
Query: 115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
N + + V G D + +D TG +++ H P+ V F+
Sbjct: 114 F------------CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 175 PDGELYASGSEDGTLRLWQTNVGK 198
DG L S S DG R+W T G+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQ 185
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 47 FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTITVTH--GSC 103
F ++N ++S + D++VR+WDV ++ L + P +++ +RDG+ I + G C
Sbjct: 118 FNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 104 VTFLDANSL---ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
+ A+ LI + P V N + + LK++ DYS G +++
Sbjct: 177 RIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKT 232
Query: 161 FKGHFGPIHCV--KFS-PDGELYASGSEDGTLRLWQ 193
+ GH +C+ FS G+ SGSED + +W
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ GH + VKFSP+GE AS S D +++W GK
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 59
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
+S+ + V +D + +D S+G +++ KGH + C F+P L SGS D ++R+
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 192 WQTNVGK 198
W GK
Sbjct: 140 WDVKTGK 146
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
L+S ++DKT+++WDVS+ G C+ L +S +
Sbjct: 86 LVSASDDKTLKIWDVSS-----------------------------GKCLKTLKGHSNYV 116
Query: 115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
N + + V G D + +D TG +++ H P+ V F+
Sbjct: 117 F------------CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 175 PDGELYASGSEDGTLRLWQTNVGK 198
DG L S S DG R+W T G+
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQ 188
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 47 FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTITVTH--GSC 103
F ++N ++S + D++VR+WDV ++ L + P +++ +RDG+ I + G C
Sbjct: 121 FNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 104 VTFLDANSL---ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
+ A+ LI + P V N + + LK++ DYS G +++
Sbjct: 180 RIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKT 235
Query: 161 FKGHFGPIHCV--KFS-PDGELYASGSEDGTLRLWQ 193
+ GH +C+ FS G+ SGSED + +W
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ GH + VKFSP+GE AS S D +++W GK
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 62
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
L+S ++DKT+++WDVS+ G C+ L +S +
Sbjct: 83 LVSASDDKTLKIWDVSS-----------------------------GKCLKTLKGHSNYV 113
Query: 115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
N + + V G D + +D TG +++ H P+ V F+
Sbjct: 114 F------------CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Query: 175 PDGELYASGSEDGTLRLWQTNVGK 198
DG L S S DG R+W T G+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQ 185
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
+S+ + V +D + +D S+G +++ KGH + C F+P L SGS D ++R+
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 192 WQTNVG 197
W G
Sbjct: 137 WDVKTG 142
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 47 FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTITVTH--GSC 103
F ++N ++S + D++VR+WDV ++ L + P +++ +RDG+ I + G C
Sbjct: 118 FNPQSNL-IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 104 VTFLDANSL---ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
+ A+ LI + P V N + + LK++ DYS G +++
Sbjct: 177 RIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKT 232
Query: 161 FKGHFGPIHCV--KFS-PDGELYASGSEDGTLRLWQ 193
+ GH +C+ FS G+ SGSED + +W
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 156 AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
A + + GH + VKFSP+GE AS S D +++W GK
Sbjct: 17 ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 59
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
L+S ++DKT+++WDVS+ G C+ L +S +
Sbjct: 83 LVSASDDKTLKIWDVSS-----------------------------GKCLKTLKGHSNYV 113
Query: 115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
N + + V G D + +D TG +++ H P+ V F+
Sbjct: 114 F------------CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Query: 175 PDGELYASGSEDGTLRLWQTNVGK 198
DG L S S DG R+W T G+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQ 185
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
+S+ + V +D + +D S+G +++ KGH + C F+P L SGS D ++R+
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 192 WQTNVG 197
W G
Sbjct: 137 WDVKTG 142
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 47 FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTITVTH--GSC 103
F ++N ++S + D++VR+WDV ++ L + P +++ +RDG+ I + G C
Sbjct: 118 FNPQSNL-IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 104 VTFLDANSL---ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
+ A+ LI + P V N + + DLK++ DYS G +++
Sbjct: 177 RIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNDLKLW--DYSKGKCLKT 232
Query: 161 FKGHFGPIHCV--KFS-PDGELYASGSEDGTLRLWQ 193
+ GH +C+ FS G+ SGSED + +W
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 156 AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
A + + GH + VKFSP+GE AS S D +++W GK
Sbjct: 17 ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 59
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 73/146 (50%), Gaps = 10/146 (6%)
Query: 51 NNTRLISCAEDKTVRLWDVSASAEV--QKLEFG--AVPNSLEISRDGTTITVTHGSCVTF 106
NN +++C++D+++ +WD+++ ++ +++ G A N ++ D ++ + +
Sbjct: 222 NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-DKYIVSASGDRTIKV 280
Query: 107 LDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFG 166
+ ++ E ++ + + L +R + V G D + +D GA + +GH
Sbjct: 281 WNTSTCEFVR--TLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGACLRVLEGHEE 337
Query: 167 PIHCVKFSPDGELYASGSEDGTLRLW 192
+ C++F D + SG+ DG +++W
Sbjct: 338 LVRCIRF--DNKRIVSGAYDGKIKVW 361
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 2/143 (1%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
+I+ + D TVR+WDV+ + L +G +T + + D S
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 245
Query: 115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
I +V +A +++ + V D + ++ ST + + GH I C+++
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR 305
Query: 175 PDGELYASGSEDGTLRLWQTNVG 197
L SGS D T+RLW G
Sbjct: 306 --DRLVVSGSSDNTIRLWDIECG 326
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRD-GTTITVTHGSCVTFLDA 109
++ +++S D T+++WD + E +++ G + L + D IT + S V D
Sbjct: 142 DDQKIVSGLRDNTIKIWD-KNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDV 200
Query: 110 NSLELIKE--HKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI---ESFKGH 164
N+ E++ H A +H L + V +D + +D ++ +I GH
Sbjct: 201 NTGEMLNTLIHHCEAVLH-----LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255
Query: 165 FGPIHCVKFSPDGELYASGSEDGTLRLWQTN 195
++ V F D + S S D T+++W T+
Sbjct: 256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTS 284
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 138 FVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG 197
V G D + +D +T GH G + C+++ D + +GS D T+R+W N G
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203
Query: 198 K 198
+
Sbjct: 204 E 204
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
SL L + +FV G D +D G ++F GH I+ + F P+G +A+GS+D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 188 TLRLW 192
T RL+
Sbjct: 249 TCRLF 253
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 159 ESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT 194
+ +GH I+ + + D L S S+DG L +W +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDS 84
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 18/152 (11%)
Query: 52 NTRL-ISCAEDKTVRLWDVSA----------SAEVQKLEFGAVPNSLEISRDGTTITVTH 100
+TRL +S A D + +LWDV +++ + F N+ D T
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT----- 249
Query: 101 GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
C F EL+ S+ + + + G +D +D
Sbjct: 250 --CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307
Query: 161 FKGHFGPIHCVKFSPDGELYASGSEDGTLRLW 192
GH + C+ + DG A+GS D L++W
Sbjct: 308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 164 HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG 197
H G + + +PD L+ SG+ D + +LW G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
SL L + +FV G D +D G ++F GH I+ + F P+G +A+GS+D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 188 TLRLW 192
T RL+
Sbjct: 249 TCRLF 253
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 159 ESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT 194
+ +GH I+ + + D L S S+DG L +W +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS 84
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 18/152 (11%)
Query: 52 NTRL-ISCAEDKTVRLWDVSA----------SAEVQKLEFGAVPNSLEISRDGTTITVTH 100
+TRL +S A D + +LWDV +++ + F N+ D T
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT----- 249
Query: 101 GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
C F EL+ S+ + + + G +D +D
Sbjct: 250 --CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307
Query: 161 FKGHFGPIHCVKFSPDGELYASGSEDGTLRLW 192
GH + C+ + DG A+GS D L++W
Sbjct: 308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 30.0 bits (66), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 164 HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG 197
H G + + +PD L+ SG+ D + +LW G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
SL L + +FV G D +D G ++F GH I+ + F P+G +A+GS+D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 188 TLRLW 192
T RL+
Sbjct: 249 TCRLF 253
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 159 ESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT 194
+ +GH I+ + + D L S S+DG L +W +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDS 84
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 18/152 (11%)
Query: 52 NTRL-ISCAEDKTVRLWDVSA----------SAEVQKLEFGAVPNSLEISRDGTTITVTH 100
+TRL +S A D + +LWDV +++ + F N+ D T
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT----- 249
Query: 101 GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
C F EL+ S+ + + + G +D +D
Sbjct: 250 --CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307
Query: 161 FKGHFGPIHCVKFSPDGELYASGSEDGTLRLW 192
GH + C+ + DG A+GS D L++W
Sbjct: 308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 164 HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG 197
H G + + +PD L+ SG+ D + +LW G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
SL L + +FV G D +D G ++F GH I+ + F P+G +A+GS+D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 188 TLRLW 192
T RL+
Sbjct: 249 TCRLF 253
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 159 ESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT 194
+ +GH I+ + + D L S S+DG L +W +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS 84
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 18/152 (11%)
Query: 52 NTRL-ISCAEDKTVRLWDVSA----------SAEVQKLEFGAVPNSLEISRDGTTITVTH 100
+TRL +S A D + +LWDV +++ + F N+ D T
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT----- 249
Query: 101 GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
C F EL+ S+ + + + G +D +D
Sbjct: 250 --CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307
Query: 161 FKGHFGPIHCVKFSPDGELYASGSEDGTLRLW 192
GH + C+ + DG A+GS D L++W
Sbjct: 308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 164 HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG 197
H G + + +PD L+ SG+ D + +LW G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
SL L + +FV G D +D G ++F GH I+ + F P+G +A+GS+D
Sbjct: 200 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 259
Query: 188 TLRLW 192
T RL+
Sbjct: 260 TCRLF 264
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 159 ESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT 194
+ +GH I+ + + D L S S+DG L +W +
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS 95
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 18/152 (11%)
Query: 52 NTRL-ISCAEDKTVRLWDVSA----------SAEVQKLEFGAVPNSLEISRDGTTITVTH 100
+TRL +S A D + +LWDV +++ + F N+ D T
Sbjct: 206 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT----- 260
Query: 101 GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
C F EL+ S+ + + + G +D +D
Sbjct: 261 --CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 318
Query: 161 FKGHFGPIHCVKFSPDGELYASGSEDGTLRLW 192
GH + C+ + DG A+GS D L++W
Sbjct: 319 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 164 HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG 197
H G + + +PD L+ SG+ D + +LW G
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 227
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 56 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEI------------SRDGTT-ITVTHGS 102
+S + DKT+RLWDV+ Q+ G + + + SRD T + G
Sbjct: 75 LSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 133
Query: 103 CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES-F 161
C+ L ++ + + VP + + + + G D KM K +IE+ F
Sbjct: 134 CLATLLGHNDWVSQVRVVPNEKA------DDDSVTIISAGND-KMVKAWNLNQFQIEADF 186
Query: 162 KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
GH I+ + SPDG L AS +DG + LW K
Sbjct: 187 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 223
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
+LLL++ R + K+ D G + SFKGH + + DG S S D
Sbjct: 25 NLLLSASRDKTLIS---WKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 81
Query: 188 TLRLWQTNVGKTY 200
TLRLW G+TY
Sbjct: 82 TLRLWDVATGETY 94
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 9/151 (5%)
Query: 51 NNTRLISCAEDKTVRLWDVSA-SAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDA 109
++ +IS DK V+ W+++ E + + N+L S DGT I + G +
Sbjct: 159 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI-ASAGKDGEIMLW 217
Query: 110 NSLELIKEHKVPAQVHSASLLLNSERPIFVCG-GEDLKMYKFD--YSTGAEIESFKGH-- 164
N + + AQ SL + R +K++ D Y F G+
Sbjct: 218 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSK 277
Query: 165 FGPIHCVK--FSPDGELYASGSEDGTLRLWQ 193
H V +S DG+ +G D +R+WQ
Sbjct: 278 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 308
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 56 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEI------------SRDGTT-ITVTHGS 102
+S + DKT+RLWDV+ Q+ G + + + SRD T + G
Sbjct: 81 LSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 139
Query: 103 CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES-F 161
C+ L ++ + + VP + + + + G D KM K +IE+ F
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKA------DDDSVTIISAGND-KMVKAWNLNQFQIEADF 192
Query: 162 KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
GH I+ + SPDG L AS +DG + LW K
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
+LLL++ R + K+ D G + SFKGH + + DG S S D
Sbjct: 31 NLLLSASRDKTLIS---WKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87
Query: 188 TLRLWQTNVGKTY 200
TLRLW G+TY
Sbjct: 88 TLRLWDVATGETY 100
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 9/151 (5%)
Query: 51 NNTRLISCAEDKTVRLWDVSA-SAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDA 109
++ +IS DK V+ W+++ E + + N+L S DGT I + G +
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI-ASAGKDGEIMLW 223
Query: 110 NSLELIKEHKVPAQVHSASLLLNSERPIFVCG-GEDLKMYKFD--YSTGAEIESFKGH-- 164
N + + AQ SL + R +K++ D Y F G+
Sbjct: 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSK 283
Query: 165 FGPIHCVK--FSPDGELYASGSEDGTLRLWQ 193
H V +S DG+ +G D +R+WQ
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 56 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEI------------SRDGTT-ITVTHGS 102
+S + DKT+RLWDV+ Q+ G + + + SRD T + G
Sbjct: 81 LSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 139
Query: 103 CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES-F 161
C+ L ++ + + VP + + + + G D KM K +IE+ F
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKA------DDDSVTIISAGND-KMVKAWNLNQFQIEADF 192
Query: 162 KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
GH I+ + SPDG L AS +DG + LW K
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
+LLL++ R + K+ D G + SFKGH + + DG S S D
Sbjct: 31 NLLLSASRDKTLIS---WKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87
Query: 188 TLRLWQTNVGKTY 200
TLRLW G+TY
Sbjct: 88 TLRLWDVATGETY 100
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 9/151 (5%)
Query: 51 NNTRLISCAEDKTVRLWDVSA-SAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDA 109
++ +IS DK V+ W+++ E + + N+L S DGT I + G +
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI-ASAGKDGEIMLW 223
Query: 110 NSLELIKEHKVPAQVHSASLLLNSERPIFVCG-GEDLKMYKFD--YSTGAEIESFKGH-- 164
N + + AQ SL + R +K++ D Y F G+
Sbjct: 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSK 283
Query: 165 FGPIHCVK--FSPDGELYASGSEDGTLRLWQ 193
H V +S DG+ +G D +R+WQ
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 56 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEI------------SRDGTT-ITVTHGS 102
+S + DKT+RLWDV+ Q+ G + + + SRD T + G
Sbjct: 81 LSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 139
Query: 103 CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES-F 161
C+ L ++ + + VP + + + + G D KM K +IE+ F
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKA------DDDSVTIISAGND-KMVKAWNLNQFQIEADF 192
Query: 162 KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
GH I+ + SPDG L AS +DG + LW K
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
+LLL++ R + K+ D G + SFKGH + + DG S S D
Sbjct: 31 NLLLSASRDKTLIS---WKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87
Query: 188 TLRLWQTNVGKTY 200
TLRLW G+TY
Sbjct: 88 TLRLWDVATGETY 100
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 9/151 (5%)
Query: 51 NNTRLISCAEDKTVRLWDVSA-SAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDA 109
++ +IS DK V+ W+++ E + + N+L S DGT I + G +
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI-ASAGKDGEIMLW 223
Query: 110 NSLELIKEHKVPAQVHSASLLLNSERPIFVCG-GEDLKMYKFD--YSTGAEIESFKGH-- 164
N + + AQ SL + R +K++ D Y F G+
Sbjct: 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSK 283
Query: 165 FGPIHCVK--FSPDGELYASGSEDGTLRLWQ 193
H V +S DG+ +G D +R+WQ
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 56 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEI------------SRDGTT-ITVTHGS 102
+S + DKT+RLWDV+ Q+ G + + + SRD T + G
Sbjct: 81 LSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 139
Query: 103 CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES-F 161
C+ L ++ + + VP + + + + G D KM K +IE+ F
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKA------DDDSVTIISAGND-KMVKAWNLNQFQIEADF 192
Query: 162 KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
GH I+ + SPDG L AS +DG + LW K
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
+LLL++ R + K+ D G + SFKGH + + DG S S D
Sbjct: 31 NLLLSASRDKTLIS---WKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87
Query: 188 TLRLWQTNVGKTY 200
TLRLW G+TY
Sbjct: 88 TLRLWDVATGETY 100
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 9/151 (5%)
Query: 51 NNTRLISCAEDKTVRLWDVSA-SAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDA 109
++ +IS DK V+ W+++ E + + N+L S DGT I + G +
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI-ASAGKDGEIMLW 223
Query: 110 NSLELIKEHKVPAQVHSASLLLNSERPIFVCG-GEDLKMYKFD--YSTGAEIESFKGHFG 166
N + + AQ SL + R +K++ D Y F G+
Sbjct: 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSA 283
Query: 167 PI--HCVK--FSPDGELYASGSEDGTLRLWQ 193
H V +S DG+ +G D +R+WQ
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 16/154 (10%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTITVTHGSCVTFLDANSLE 113
+++ E+ +RLW+ + A + L F P S++ ++DGT I VT L
Sbjct: 123 IVTGVENGELRLWNKTG-ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG 181
Query: 114 LIKEH---------KVPAQVHSA--SLLLNSE---RPIFVCGGEDLKMYKFDYSTGAEIE 159
+ +H + A+ HS SL ++ E FV G ++ + +
Sbjct: 182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTG 241
Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ 193
GH GPI ++F+ +L S S+DGTLR+W
Sbjct: 242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 168 IHCVKFSPDGELYASGSEDGTLRLW 192
+ C+ +S DG +G E+G LRLW
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLW 135
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 57/148 (38%), Gaps = 36/148 (24%)
Query: 51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN 110
+N +++S + D+T++LW+ + E G E RD SCV F
Sbjct: 483 DNRQIVSASRDRTIKLWNTLGECKYTISEGG------EGHRDWV-------SCVRFSP-- 527
Query: 111 SLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHC 170
N+ +P V D + ++ S + GH G +
Sbjct: 528 ---------------------NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVST 566
Query: 171 VKFSPDGELYASGSEDGTLRLWQTNVGK 198
V SPDG L ASG +DG + LW GK
Sbjct: 567 VAVSPDGSLCASGGKDGVVLLWDLAEGK 594
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 129 LLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGT 188
++L+S+ + G D ++ +D + G F GH + V FS D S S D T
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRT 495
Query: 189 LRLWQT 194
++LW T
Sbjct: 496 IKLWNT 501
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 24/52 (46%)
Query: 146 KMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG 197
K+ K D + G GH + V S DG+ SGS DG LRLW G
Sbjct: 411 KLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG 462
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 18/155 (11%)
Query: 56 ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEI----------SRDGTT-ITVTHGSC 103
+S + DKT+RLWDV+ Q+ + S++I SRD T + G C
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQC 140
Query: 104 VTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG 163
+ L ++ + + VP + + + + G D + ++ + F G
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKA------DDDSVTIISAGNDKXVKAWNLNQFQIEADFIG 194
Query: 164 HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
H I+ + SPDG L AS +DG + LW K
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKK 229
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
+LLL++ R + K+ D G + SFKGH + + DG S S D
Sbjct: 31 NLLLSASRDKTLIS---WKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87
Query: 188 TLRLWQTNVGKTY 200
TLRLW G+TY
Sbjct: 88 TLRLWDVATGETY 100
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 9/151 (5%)
Query: 51 NNTRLISCAEDKTVRLWDVSA-SAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDA 109
++ +IS DK V+ W+++ E + + N+L S DGT I + G
Sbjct: 165 DSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI-ASAGKDGEIXLW 223
Query: 110 NSLELIKEHKVPAQVHSASLLLNSERPIFVCG-GEDLKMYKFD--YSTGAEIESFKGH-- 164
N + + AQ SL + R +K++ D Y F G+
Sbjct: 224 NLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSK 283
Query: 165 FGPIHCVK--FSPDGELYASGSEDGTLRLWQ 193
H V +S DG+ +G D +R+WQ
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 98 VTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE 157
V G+C++ +DA+S QV S + + I G ++ + Y T A+
Sbjct: 228 VCSGACLSAVDAHS-----------QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 276
Query: 158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ 193
+ KGH + + SPDG AS + D TLRLW+
Sbjct: 277 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 14/152 (9%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTITV-THGSCVTFLDAN 110
+++ A D +V LW S+ +Q L+ G +S+ ++G + V T + V D
Sbjct: 38 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 97
Query: 111 SLELIKEHKVPAQVHSA---SLLLNSERPIFVCGGEDLKMYKFDYSTGAE-IESFKGHFG 166
+ ++ HSA SL NS I G ++ D + + GH
Sbjct: 98 QQKRLRN----MTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 151
Query: 167 PIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ ++++PDG ASG D + +W + G+
Sbjct: 152 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 98 VTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE 157
V G+C++ +DA+S QV S + + I G ++ + Y T A+
Sbjct: 308 VCSGACLSAVDAHS-----------QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 356
Query: 158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ 193
+ KGH + + SPDG AS + D TLRLW+
Sbjct: 357 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 14/152 (9%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTITV-THGSCVTFLDAN 110
+++ A D +V LW S+ +Q L+ G +S+ ++G + V T + V D
Sbjct: 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177
Query: 111 SLELIKEHKVPAQVHSA---SLLLNSERPIFVCGGEDLKMYKFDYSTGAE-IESFKGHFG 166
+ ++ HSA SL NS I G ++ D + + GH
Sbjct: 178 QQKRLRN----MTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 231
Query: 167 PIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ ++++PDG ASG D + +W + G+
Sbjct: 232 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 98 VTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE 157
V G+C++ +DA+S QV S + + I G ++ + Y T A+
Sbjct: 319 VCSGACLSAVDAHS-----------QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 367
Query: 158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ 193
+ KGH + + SPDG AS + D TLRLW+
Sbjct: 368 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 14/152 (9%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTITV-THGSCVTFLDAN 110
+++ A D +V LW S+ +Q L+ G +S+ ++G + V T + V D
Sbjct: 129 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 188
Query: 111 SLELIKEHKVPAQVHSA---SLLLNSERPIFVCGGEDLKMYKFDYSTGAE-IESFKGHFG 166
+ ++ HSA SL NS I G ++ D + + GH
Sbjct: 189 QQKRLRN----MTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 242
Query: 167 PIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
+ ++++PDG ASG D + +W + G+
Sbjct: 243 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 274
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 54 RLISCAEDKTVRLWDVSASAEVQKL--EFGAVPNSLEISRDGTTITVTHGSCVTFLDANS 111
R++S ++D T+++W ++ L G V +S RD I+ + + +A +
Sbjct: 131 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ--MRDNIIISGSTDRTLKVWNAET 188
Query: 112 LELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCV 171
E I H + + + E+ + V G D + +D TG + GH + CV
Sbjct: 189 GECI--HTLYGHTSTVRCMHLHEKRV-VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245
Query: 172 KFSPDGELYASGSEDGTLRLW 192
++ DG SG+ D +++W
Sbjct: 246 QY--DGRRVVSGAYDFMVKVW 264
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 8/148 (5%)
Query: 54 RLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLE 113
R++S A D V++WD + L+ G + DG I V GS T + +E
Sbjct: 251 RVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQFDG--IHVVSGSLDTSIRVWDVE 307
Query: 114 LIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG---HFGPIHC 170
S + + + I V G D + +D TG +++ +G H + C
Sbjct: 308 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 367
Query: 171 VKFSPDGELYASGSEDGTLRLWQTNVGK 198
++F+ + + S+DGT++LW G+
Sbjct: 368 LQFNKN--FVITSSDDGTVKLWDLKTGE 393
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 137 IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV 196
I + G D + ++ TG I + GH + C+ + SGS D TLR+W
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIET 228
Query: 197 GK 198
G+
Sbjct: 229 GQ 230
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 73/184 (39%), Gaps = 22/184 (11%)
Query: 14 TGDWIGTFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWDVSASA 73
TG + T GH G VW Q ++N +IS + D+T+++W+
Sbjct: 148 TGKCLRTLVGHTGGVWSS----------------QMRDNI-IISGSTDRTLKVWNAETGE 190
Query: 74 EVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNS 133
+ L + ++ + + + D + + + H + V + +
Sbjct: 191 CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL--HVLMGHVAAVRCVQYD 248
Query: 134 ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ 193
R + V G D + +D T + + +GH ++ ++F DG SGS D ++R+W
Sbjct: 249 GRRV-VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD 305
Query: 194 TNVG 197
G
Sbjct: 306 VETG 309
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 11/52 (21%)
Query: 161 FKGHFG-PIHCVKFSPDGELYASGSEDGTLRLW--------QTNVGKTYGLW 203
KGH I C++F G SGS+D TL++W +T VG T G+W
Sbjct: 114 LKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 163
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 138 FVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG 197
F+ D + D TG + +++GH ++C+K P+G++ + G ED T+R+W G
Sbjct: 198 FISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIWSKENG 256
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 17/124 (13%)
Query: 4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKT 63
DG L TGD + T+EGH+ V+ + + N ++SC ED+T
Sbjct: 204 DGLIKLVDXHTGDVLRTYEGHESFVYCIKL----------------LPNGDIVSCGEDRT 247
Query: 64 VRLWDVSASAEVQKLEFGAVPN-SLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPA 122
VR+W + Q + A+ S++ +G I + + V E ++
Sbjct: 248 VRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRIFSQEKSRWASEDEIKG 307
Query: 123 QVHS 126
++ S
Sbjct: 308 ELRS 311
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 45/167 (26%)
Query: 49 AKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLD 108
A + L +C+ DK+V +W+V E + CV+ L+
Sbjct: 114 APSGNLLATCSRDKSVWVWEVDEEDEYE--------------------------CVSVLN 147
Query: 109 ANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPI 168
+++ ++ P+Q AS + + +K+Y+ + + +GH +
Sbjct: 148 SHTQDVKHVVWHPSQELLASASYD----------DTVKLYREEEDDWVCCATLEGHESTV 197
Query: 169 HCVKFSPDGELYASGSEDGTLRLWQTNV-GKTYGL--------WKCI 206
+ F P G+ AS S+D T+R+W+ + G G+ WKCI
Sbjct: 198 WSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI 244
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 79/201 (39%), Gaps = 50/201 (24%)
Query: 4 DGKPMLRQGDTGDWI--GTFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAED 61
D L + + DW+ T EGH+ VW + + + RL SC++D
Sbjct: 171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFD---------------PSGQRLASCSDD 215
Query: 62 KTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKV 120
+TVR+W Q + G+ P+ I T++ H T D +L
Sbjct: 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCI----CTLSGFHSR--TIYDIAWCQLTGALAT 269
Query: 121 PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESF-------KGHFGPIHCVKF 173
CG + +++++ D ++ + +F + H ++CV +
Sbjct: 270 ------------------ACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW 311
Query: 174 SP-DGELYASGSEDGTLRLWQ 193
+P + L AS S+DG + W+
Sbjct: 312 NPKEPGLLASCSDDGEVAFWK 332
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY 200
+ + +GH + V ++P G L A+ S D ++ +W+ + Y
Sbjct: 98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY 140
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 139 VCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTNVG 197
V GG+D + +D S A ++S+ H ++CV P + ++ S EDG + LW T
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP 214
Query: 198 K 198
K
Sbjct: 215 K 215
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 34/139 (24%)
Query: 54 RLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLE 113
+L+S + D+TVR+WD L G +L I TT+ V+ G ++ A SL+
Sbjct: 179 KLVSGSGDRTVRIWD---------LRTGQCSLTLSIEDGVTTVAVSPGDG-KYIAAGSLD 228
Query: 114 LIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKF 173
A + +SE V E L +E ES GH ++ V F
Sbjct: 229 ------------RAVRVWDSETGFLV---ERLD---------SENESGTGHKDSVYSVVF 264
Query: 174 SPDGELYASGSEDGTLRLW 192
+ DG+ SGS D +++LW
Sbjct: 265 TRDGQSVVSGSLDRSVKLW 283
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 122 AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYA 181
+ ++ S+ + + G ED + +D + +GH I+ + + P G+
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 182 SGSEDGTLRLWQTNVGKTYGLWKCIEGGL 210
SGS D T+R+W G+ L IE G+
Sbjct: 182 SGSGDRTVRIWDLRTGQC-SLTLSIEDGV 209
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 12/65 (18%)
Query: 157 EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGL 216
E+ H + CVKFS DGE A+G KT +++ +G L L
Sbjct: 56 ELHKSLDHTSVVCCVKFSNDGEYLATG------------CNKTTQVYRVSDGSLVARLSD 103
Query: 217 DSSGH 221
DS+ +
Sbjct: 104 DSAAN 108
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 128 SLLLNSERPI-FVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSED 186
S+ RP + G +D + F+ +F H +H V+++PDG L+AS D
Sbjct: 152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211
Query: 187 GTLRLWQTNVGKTYGLWK 204
GT+ L+ G G+++
Sbjct: 212 GTIVLYNGVDGTKTGVFE 229
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 107 LDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI---ESFKG 163
L S+ +K PA++ S + N V + K+ + + E+ S+
Sbjct: 477 LSGASVSEVKTIVHPAEITSVAFSNNGA--FLVATDQSRKVIPYSVANNFELAHTNSWTF 534
Query: 164 HFGPIHCVKFSPDGELYASGSEDGTLRLWQTN 195
H + CV +SPD A+GS D ++ +W N
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 566
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK-------GHFGPIHCVKFSPDGELY 180
S+ N + +F G D + ++ G + F+ H G + + +SPDG
Sbjct: 195 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 254
Query: 181 ASGSEDGTLRLWQ 193
AS S D T+++W
Sbjct: 255 ASASADKTIKIWN 267
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Query: 70 SASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASL 129
S+ A KL + P L +S DG + +C + S + E VP +S+ +
Sbjct: 402 SSKAVANKLS--SQPLGLAVSADGD---IAVAACYKHIAIYSHGKLTE--VPISYNSSCV 454
Query: 130 LLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG--HFGPIHCVKFSPDGEL 179
L++++ GG+D K++ + S GA + K H I V FS +G
Sbjct: 455 ALSNDKQFVAVGGQDSKVHVYKLS-GASVSEVKTIVHPAEITSVAFSNNGAF 505
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 23/81 (28%)
Query: 4 DGKPMLRQGDTGDWIGTFE-------GHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLI 56
DG +L G G G FE H G V+G+ + + T++
Sbjct: 211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT---------------WSPDGTKIA 255
Query: 57 SCAEDKTVRLWDVSASAEVQK 77
S + DKT+++W+V A+ +V+K
Sbjct: 256 SASADKTIKIWNV-ATLKVEK 275
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 86/225 (38%), Gaps = 50/225 (22%)
Query: 11 QGDTGDWIGTFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWD-- 68
+G+T I T GH+G VW VD K T L SC+ D V +W
Sbjct: 39 EGETHKLIDTLTGHEGPVWRVD-------------WAHPKFGTILASCSYDGKVMIWKEE 85
Query: 69 ----------VSASAEVQKLEFGAV---PNSLEISRDGTTITVTHG----SCVTFLDANS 111
SA V +++ P L S DG V + +DA++
Sbjct: 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145
Query: 112 LELIKEHKVPAQV-----HSASLLLNSERPIFVCGGED--LKMYKF--DYSTGAEIESFK 162
+ + PA + H+ + E FV GG D +K++K+ D T + +
Sbjct: 146 IGVNSASWAPATIEEDGEHNGT----KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 201
Query: 163 GHFGPIHCVKFSPDGEL---YASGSEDGTLRLWQTNVGKTYGLWK 204
GH + V +SP L AS S+D T +W + G WK
Sbjct: 202 GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD--NEQGPWK 244
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 124 VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS-PD-GELYA 181
+H A + +R + +K+++ + T I++ GH GP+ V ++ P G + A
Sbjct: 12 IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILA 71
Query: 182 SGSEDGTLRLWQTNVGK 198
S S DG + +W+ G+
Sbjct: 72 SCSYDGKVMIWKEENGR 88
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 86/225 (38%), Gaps = 50/225 (22%)
Query: 11 QGDTGDWIGTFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWD-- 68
+G+T I T GH+G VW VD K T L SC+ D V +W
Sbjct: 39 EGETHKLIDTLTGHEGPVWRVD-------------WAHPKFGTILASCSYDGKVXIWKEE 85
Query: 69 ----------VSASAEVQKLEFGAV---PNSLEISRDGTTITVTHG----SCVTFLDANS 111
SA V +++ P L S DG V + +DA++
Sbjct: 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145
Query: 112 LELIKEHKVPAQV-----HSASLLLNSERPIFVCGGED--LKMYKF--DYSTGAEIESFK 162
+ + PA + H+ + E FV GG D +K++K+ D T + +
Sbjct: 146 IGVNSASWAPATIEEDGEHNGT----KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 201
Query: 163 GHFGPIHCVKFSPDGEL---YASGSEDGTLRLWQTNVGKTYGLWK 204
GH + V +SP L AS S+D T +W + G WK
Sbjct: 202 GHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQD--NEQGPWK 244
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 124 VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS-PD-GELYA 181
+H A +R + +K+++ + T I++ GH GP+ V ++ P G + A
Sbjct: 12 IHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILA 71
Query: 182 SGSEDGTLRLWQTNVGK 198
S S DG + +W+ G+
Sbjct: 72 SCSYDGKVXIWKEENGR 88
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSED 186
+ L L+ E + D + +D TG + F GH ++ V FSPD S +
Sbjct: 80 SDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAE 139
Query: 187 GTLRLW 192
++LW
Sbjct: 140 REIKLW 145
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 22/161 (13%)
Query: 49 AKNNTRLISCAEDKTVRLWD----------VSASAEVQKLEFGAVPNSLEISRDGTTITV 98
++ N IS + DKT+RLWD V +EV + F P++ +I G +
Sbjct: 85 SQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS--PDNRQILSAGAEREI 142
Query: 99 THGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSER-----PIFVCGGED--LKMYKFD 151
+ + +S E + V + ++ ++ + P F G D LK++ +
Sbjct: 143 KLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN 202
Query: 152 YSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLW 192
+ +FK H ++ + SP+G+ A+G +D L +W
Sbjct: 203 FQIRY---TFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 132 NSERPIFVCGGED-----LKMYKFDYS--TGAEIESFKGHFGPIHCVKFSPDGELYASGS 184
N + P+ + G D K+Y+ + + G ++ GH + + S + S S
Sbjct: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 185 EDGTLRLWQTNVGKTY 200
D TLRLW G TY
Sbjct: 96 WDKTLRLWDLRTGTTY 111
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 86/225 (38%), Gaps = 50/225 (22%)
Query: 11 QGDTGDWIGTFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWD-- 68
+G+T I T GH+G VW VD K T L SC+ D V +W
Sbjct: 39 EGETHKLIDTLTGHEGPVWRVD-------------WAHPKFGTILASCSYDGKVLIWKEE 85
Query: 69 ----------VSASAEVQKLEFGAV---PNSLEISRDGTTITVTHG----SCVTFLDANS 111
SA V +++ P L S DG V + +DA++
Sbjct: 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145
Query: 112 LELIKEHKVPAQV-----HSASLLLNSERPIFVCGGED--LKMYKF--DYSTGAEIESFK 162
+ + PA + H+ + E FV GG D +K++K+ D T + +
Sbjct: 146 IGVNSASWAPATIEEDGEHNGT----KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 201
Query: 163 GHFGPIHCVKFSPDGEL---YASGSEDGTLRLWQTNVGKTYGLWK 204
GH + V +SP L AS S+D T +W + G WK
Sbjct: 202 GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD--NEQGPWK 244
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 124 VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS-PD-GELYA 181
+H A L +R + +K+++ + T I++ GH GP+ V ++ P G + A
Sbjct: 12 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILA 71
Query: 182 SGSEDGTLRLWQTNVGK 198
S S DG + +W+ G+
Sbjct: 72 SCSYDGKVLIWKEENGR 88
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 37/143 (25%)
Query: 54 RLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLE 113
L+S ++D T+ LWD+S AVP ++ D TI H + V + S
Sbjct: 192 HLLSASDDHTICLWDIS-----------AVPKEGKVV-DAKTIFTGHTAVVEDV---SWH 236
Query: 114 LIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDY---STGAEIESFKGHFGPIHC 170
L+ E +F +D K+ +D +T S H ++C
Sbjct: 237 LLHES------------------LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNC 278
Query: 171 VKFSPDGE-LYASGSEDGTLRLW 192
+ F+P E + A+GS D T+ LW
Sbjct: 279 LSFNPYSEFILATGSADKTVALW 301
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 86/225 (38%), Gaps = 50/225 (22%)
Query: 11 QGDTGDWIGTFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWD-- 68
+G+T I T GH+G VW VD K T L SC+ D V +W
Sbjct: 41 EGETHKLIDTLTGHEGPVWRVD-------------WAHPKFGTILASCSYDGKVLIWKEE 87
Query: 69 ----------VSASAEVQKLEFGAV---PNSLEISRDGTTITVTHG----SCVTFLDANS 111
SA V +++ P L S DG V + +DA++
Sbjct: 88 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 147
Query: 112 LELIKEHKVPAQV-----HSASLLLNSERPIFVCGGED--LKMYKF--DYSTGAEIESFK 162
+ + PA + H+ + E FV GG D +K++K+ D T + +
Sbjct: 148 IGVNSASWAPATIEEDGEHNGT----KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 203
Query: 163 GHFGPIHCVKFSPDGEL---YASGSEDGTLRLWQTNVGKTYGLWK 204
GH + V +SP L AS S+D T +W + G WK
Sbjct: 204 GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD--NEQGPWK 246
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 124 VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS-PD-GELYA 181
+H A L +R + +K+++ + T I++ GH GP+ V ++ P G + A
Sbjct: 14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILA 73
Query: 182 SGSEDGTLRLWQTNVGK 198
S S DG + +W+ G+
Sbjct: 74 SCSYDGKVLIWKEENGR 90
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 8/156 (5%)
Query: 51 NNTRLISCAEDKTVRLWDVS------ASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSC 103
N TR + V++WD+S +++ L S ++ DG T+ V S
Sbjct: 61 NPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120
Query: 104 VTFLD-ANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK 162
++ D A IK + +L ++ + + D + +D + F+
Sbjct: 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ 180
Query: 163 GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
GH C+ S DG +G D T+R W G+
Sbjct: 181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 9/148 (6%)
Query: 56 ISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTI-TVTHGSCVTFLDANS 111
SC D + +WD+ V++ + GA + ++IS DGT + T + V D
Sbjct: 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGA--SCIDISNDGTKLWTGGLDNTVRSWDLRE 214
Query: 112 LELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCV 171
+++H +Q+ S E ++ G + + + + H + +
Sbjct: 215 GRQLQQHDFTSQIFSLGYCPTGE---WLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL 271
Query: 172 KFSPDGELYASGSEDGTLRLWQTNVGKT 199
KF+ G+ + S +D L W+T G +
Sbjct: 272 KFAYCGKWFVSTGKDNLLNAWRTPYGAS 299
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP-DGELYASGSEDGTLR 190
N+ P+ G + + T I+ + GH I+ +KF P D L S S+D LR
Sbjct: 77 NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 136
Query: 191 LWQTNVGKTYGLWKCIEGGLNNSLGLD 217
LW ++ +EG + L D
Sbjct: 137 LWNIQTDTLVAIFGGVEGHRDEVLSAD 163
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP-DGELYASGSEDGTLR 190
N+ P+ G + + T I+ + GH I+ +KF P D L S S+D LR
Sbjct: 118 NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 177
Query: 191 LWQTNVGKTYGLWKCIEGGLNNSLGLD 217
LW ++ +EG + L D
Sbjct: 178 LWNIQTDTLVAIFGGVEGHRDEVLSAD 204
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP-DGELYASGSEDGTLR 190
N+ P+ G + + T I+ + GH I+ +KF P D L S S+D LR
Sbjct: 82 NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 141
Query: 191 LWQTNVGKTYGLWKCIEGGLNNSLGLD 217
LW ++ +EG + L D
Sbjct: 142 LWNIQTDTLVAIFGGVEGHRDEVLSAD 168
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP-DGELYASGSEDGTLR 190
N+ P+ G + + T I+ + GH I+ +KF P D L S S+D LR
Sbjct: 81 NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 140
Query: 191 LWQTNVGKTYGLWKCIEGGLNNSLGLD 217
LW ++ +EG + L D
Sbjct: 141 LWNIQTDTLVAIFGGVEGHRDEVLSAD 167
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP-DGELYASGSEDGTLR 190
N+ P+ G + + T I+ + GH I+ +KF P D L S S+D LR
Sbjct: 81 NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 140
Query: 191 LWQTNVGKTYGLWKCIEGGLNNSLGLD 217
LW ++ +EG + L D
Sbjct: 141 LWNIQTDTLVAIFGGVEGHRDEVLSAD 167
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 86/225 (38%), Gaps = 50/225 (22%)
Query: 11 QGDTGDWIGTFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWD-- 68
+G+T I T GH+G VW VD K T L SC+ D V +W
Sbjct: 39 EGETHKLIDTLTGHEGPVWRVDWA-------------HPKFGTILASCSYDGKVLIWKEE 85
Query: 69 ----------VSASAEVQKLEFGAV---PNSLEISRDGTTITVTHG----SCVTFLDANS 111
SA V +++ P L S DG V + +DA++
Sbjct: 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145
Query: 112 LELIKEHKVPAQV-----HSASLLLNSERPIFVCGGED--LKMYKF--DYSTGAEIESFK 162
+ + PA + H+ + E FV GG D +K++K+ D T + +
Sbjct: 146 IGVNSASWAPATIEEDGEHNGT----KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 201
Query: 163 GHFGPIHCVKFSPDGEL---YASGSEDGTLRLWQTNVGKTYGLWK 204
GH + V +SP L AS S+D T +W + G WK
Sbjct: 202 GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD--NEQGPWK 244
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 124 VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS-PD-GELYA 181
+H A L +R + +K+++ + T I++ GH GP+ V ++ P G + A
Sbjct: 12 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILA 71
Query: 182 SGSEDGTLRLWQTNVGK 198
S S DG + +W+ G+
Sbjct: 72 SCSYDGKVLIWKEENGR 88
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 51 NNTRLISCAE-DKTVRLWDV-SASAEVQKLE----FGAVPNSLEISRDGTTITVTHG-SC 103
+ +RLI+CA+ DK++ ++DV S V KL F PN++ I+ D TT+ +
Sbjct: 113 DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGD 172
Query: 104 VTFLDANSLELIKEHKVPAQVHSASL 129
V +D NS+ K + P H + L
Sbjct: 173 VYSIDINSIPEEKFTQEPILGHVSML 198
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 36/138 (26%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
L++ D +RLW+ S++ E + +G V N+ S+ G TV+ G F
Sbjct: 260 LLTVGTDNRMRLWN-SSNGENTLVNYGKVCNN---SKKGLKFTVSCGCSSEF-------- 307
Query: 115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
+FV G + +Y YS G +I KGH+ + C F
Sbjct: 308 ----------------------VFVPYGSTIAVYTV-YS-GEQITMLKGHYKTVDCCVFQ 343
Query: 175 PDGELYASGSEDGTLRLW 192
+ + SGS D + W
Sbjct: 344 SNFQELYSGSRDCNILAW 361
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 80 FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIK--EHKVPAQVHSASLLLNSERPI 137
+ + P + + + +TV + A+ E ++ ++ + +H+ + L E
Sbjct: 148 YSSAPCTGVVCNNPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILT 207
Query: 138 FVCGGEDLKMYKFDY--STGAEIESFKGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQT 194
G+ LK++ F + ++I S G P+HCV P+ + + A+G +DG L +W
Sbjct: 208 VNSIGQ-LKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDV 266
Query: 195 NVG 197
G
Sbjct: 267 RQG 269
>pdb|1L0Q|A Chain A, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|B Chain B, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|C Chain C, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|D Chain D, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
Length = 391
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 65/143 (45%), Gaps = 7/143 (4%)
Query: 56 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV--THGSCVTFLDANSLE 113
I+ +E + + DV+++ + G+ P IS DGT + V H + V+ +D +
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSNPXGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 114 LIKEHKVPAQVHSASLLLNSE-RPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVK 172
+I VPA + ++ + + ++V + D ++ + K P+ +
Sbjct: 66 VIAT--VPAGSSPQGVAVSPDGKQVYVTNXASSTLSVIDTTSNTVAGTVKTGKSPL-GLA 122
Query: 173 FSPDG-ELYASGSEDGTLRLWQT 194
SPDG +LY + + D T+ + T
Sbjct: 123 LSPDGKKLYVTNNGDKTVSVINT 145
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 131 LNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLR 190
L R I D+K+ +++ EI+ + H I +KF P GE S S+D L+
Sbjct: 104 LQMRRFILGTTEGDIKVLDSNFNLQREID--QAHVSEITKLKFFPSGEALISSSQDMQLK 161
Query: 191 LWQTNVG 197
+W G
Sbjct: 162 IWSVKDG 168
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 138 FVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG 197
+ +D+++ + G+ + GH + + G S S DGT+RLW+ G
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 210
Query: 198 KT 199
T
Sbjct: 211 TT 212
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 131 LNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLR 190
L R I D+K+ +++ EI+ + H I +KF P GE S S+D L+
Sbjct: 107 LQMRRFILGTTEGDIKVLDSNFNLQREID--QAHVSEITKLKFFPSGEALISSSQDMQLK 164
Query: 191 LWQTNVG 197
+W G
Sbjct: 165 IWSVKDG 171
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 138 FVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG 197
+ +D+++ + G+ + GH + + G S S DGT+RLW+ G
Sbjct: 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 213
Query: 198 KT 199
T
Sbjct: 214 TT 215
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 162 KGHFGPIHCVKFSPDGELYASGSEDGTL-RLWQTNVG 197
K H P+ V+ + G++ A+ S+DGTL R++QT+ G
Sbjct: 176 KAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNG 212
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 28/143 (19%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLE 113
L+S + D+TVR+WD+ E + L+I + GS L +
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV--WK 233
Query: 114 LIKEHKVP--AQVHSASLLLNS--ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIH 169
L KE VP + H L+ ++ E P FV +GH +
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVG-------------------VLRGHMASVR 274
Query: 170 CVKFSPDGELYASGSEDGTLRLW 192
V S G + SGS D TL +W
Sbjct: 275 TV--SGHGNIVVSGSYDNTLIVW 295
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 138 FVCGGEDLKMYK-FDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV 196
+V G D KM + +D + GH G + +K++ G L SGS D T+R+W
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL-VSGSTDRTVRVWDIKK 192
Query: 197 G 197
G
Sbjct: 193 G 193
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 137 IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKF--SPDGELYASGSEDGTLRLWQ 193
I V G D + +D G F+GH + C+ + + +GS D TL +W+
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 67/148 (45%), Gaps = 11/148 (7%)
Query: 51 NNTRLISCAEDKTVRLWD-----VSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVT 105
+N +++ A ++ V +W+ VSA AE + + A S++ S DG+ ++V G+
Sbjct: 102 SNLNVVAVALERNVYVWNADSGSVSALAETDESTYVA---SVKWSHDGSFLSVGLGNG-- 156
Query: 106 FLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA-EIESFKGH 164
+D +E + + A + L+ R + G ++ D +I + +GH
Sbjct: 157 LVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH 216
Query: 165 FGPIHCVKFSPDGELYASGSEDGTLRLW 192
+ + + DG ASG D +++W
Sbjct: 217 SSEVCGLAWRSDGLQLASGGNDNVVQIW 244
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 61 DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG---SCVTFLDANSLELIKE 117
DK + W+ + A V ++ G+ SL S I THG + ++ +S L K+
Sbjct: 283 DKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQ 342
Query: 118 HKVPAQVHSASLLLNSERP-----IFVCGGEDLKMYK 149
+PA H +L ++ P E+LK ++
Sbjct: 343 VDIPA--HDTRVLYSALSPDGRILSTAASDENLKFWR 377
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 125 HSASLL--LNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYAS 182
H S++ L E + G +D + +D + GH G + +K++ G L S
Sbjct: 120 HXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL-VS 178
Query: 183 GSEDGTLRLWQTNVG 197
GS D T+R+W G
Sbjct: 179 GSTDRTVRVWDIKKG 193
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 28/143 (19%)
Query: 55 LISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLE 113
L+S + D+TVR+WD+ E + L+I + GS L +
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV--WK 233
Query: 114 LIKEHKVP--AQVHSASLLLNS--ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIH 169
L KE VP + H L+ ++ E P FV +GH +
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVG-------------------VLRGHXASVR 274
Query: 170 CVKFSPDGELYASGSEDGTLRLW 192
V S G + SGS D TL +W
Sbjct: 275 TV--SGHGNIVVSGSYDNTLIVW 295
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 137 IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKF--SPDGELYASGSEDGTLRLWQ 193
I V G D + +D G F+GH + C+ + + +GS D TL +W+
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 137 IFVCGGEDLKM----YKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLW 192
I G D K+ K+D T ++ H I V + P L A+GS D T+ +W
Sbjct: 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85
Query: 193 --QTNVGKTY--GLWKCIEGGLNNSLGL 216
+ + +T+ L IEG N G+
Sbjct: 86 AKEESADRTFEMDLLAIIEGHENEVKGV 113
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 15/67 (22%)
Query: 16 DW--IGTFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWDVSASA 73
DW + GH+G VW D + + + RL S ++D TVR+W
Sbjct: 186 DWECVAVLNGHEGTVWSSDFD-------------KTEGVFRLCSGSDDSTVRVWKYMGDD 232
Query: 74 EVQKLEF 80
E + E+
Sbjct: 233 EDDQQEW 239
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 161 FKGHFGPIHCVKFSPDGELYASGSEDGT-LRLWQTNVG 197
K H PI V+ + ++ A+ S+DGT +R+++T G
Sbjct: 191 IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG 228
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 142 GEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP---DGELYASGSEDGTLRLWQTNVGK 198
G D K+ FD +G ++ + P+ F+ D + +A+ D T+R+W K
Sbjct: 226 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK 285
Query: 199 TYGLWKCIEGGL-NNSLGLDSSGH 221
W + L N +G+ ++G+
Sbjct: 286 CVQKWTLDKQQLGNQQVGVVATGN 309
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 35/102 (34%)
Query: 119 KVPAQVHSASLLLNSERPIFVCGGE--------DLKMYKFDY--------------STGA 156
KVP + + L RP+ + GGE D K+Y Y ST
Sbjct: 42 KVPTPCEALATL----RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPT 97
Query: 157 EIESFKGHF--------GPIHCVKFSPDGELYASG-SEDGTL 189
+ES + F G HC+ S +GE+Y+ G +EDG L
Sbjct: 98 LLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 139
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 142 GEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP---DGELYASGSEDGTLRLWQTNVGK 198
G D K+ FD +G ++ + P+ F+ D + +A+ D T+R+W K
Sbjct: 226 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK 285
Query: 199 TYGLWKCIEGGL-NNSLGLDSSGH 221
W + L N +G+ ++G+
Sbjct: 286 CVQKWTLDKQQLGNQQVGVVATGN 309
>pdb|3HKW|A Chain A, Hcv Ns5b Genotype 1a In Complex With 1,5 Benzodiazepine
Inhi
pdb|3HKW|B Chain B, Hcv Ns5b Genotype 1a In Complex With 1,5 Benzodiazepine
Inhi
pdb|3HKW|C Chain C, Hcv Ns5b Genotype 1a In Complex With 1,5 Benzodiazepine
Inhi
Length = 581
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 72 SAEVQKLEFGAVPNSLEISRDGTTITVTHGSC-----VTF-----LDANSLELIKEHKVP 121
+AE QKL A+ NSL + T + +C VTF LD++ +++KE K
Sbjct: 18 AAEEQKLPINALSNSLLRHHNMVYSTTSRSACQRQKKVTFDRLQVLDSHYQDVLKEVKAA 77
Query: 122 AQVHSASLL 130
A A+LL
Sbjct: 78 ASKVKANLL 86
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 6/130 (4%)
Query: 51 NNTRLISCAEDKTVRLWDVSASAEVQKL---EFGAVPNSLEISRDGTTITV--THGSCVT 105
++ +SC+ED + LWD ++ G +P SL + + V V+
Sbjct: 181 KDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS 240
Query: 106 FLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHF 165
+D S + V +Q + + P ED + D S+ +E+ + H
Sbjct: 241 LVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD-SSLSELFRSQAHR 299
Query: 166 GPIHCVKFSP 175
+ +SP
Sbjct: 300 DFVRDATWSP 309
>pdb|3QGH|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Genotype 1a Complex With
N-Cyclopropyl-6-[(3r)-3-{[4-
(Trifluoromethoxy)benzyl]carbamoyl}-4-{[4-
(Trifluoromethoxy)
Phenyl]sulfonyl}piperazin-1-Yl]pyridazine-3-Carboxamide
pdb|3QGI|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Genotype 1a Complex With
N-[(2s)-Butan-2-Yl]-6-[(3r)-3-
{[4-(Trifluoromethoxy)benzyl]carbamoyl}-4-{[4-
(Trifluoromethoxy)
Phenyl]sulfonyl}piperazin-1-Yl]pyridazine-3-Carboxamide
Length = 571
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 72 SAEVQKLEFGAVPNSLEISRDGTTITVTHGSC-----VTF-----LDANSLELIKEHKVP 121
+AE QKL A+ NSL + T + +C VTF LD++ +++KE K
Sbjct: 16 AAEEQKLPINALSNSLLRHHNLVYSTTSRSACQRQKKVTFDRLQVLDSHYQDVLKEVKAA 75
Query: 122 AQVHSASLL 130
A A+LL
Sbjct: 76 ASKVKANLL 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,397,229
Number of Sequences: 62578
Number of extensions: 301778
Number of successful extensions: 1253
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 444
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)