Query psy6442
Match_columns 231
No_of_seqs 162 out of 1889
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 18:02:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 100.0 8.6E-32 2.9E-36 218.0 25.6 206 1-206 31-269 (304)
2 1vyh_C Platelet-activating fac 100.0 1.3E-31 4.5E-36 225.7 27.0 216 1-219 126-391 (410)
3 3ow8_A WD repeat-containing pr 100.0 4.3E-31 1.5E-35 215.8 26.6 217 1-220 54-302 (321)
4 4gqb_B Methylosome protein 50; 100.0 3E-31 1E-35 218.9 23.5 184 1-201 99-294 (344)
5 3ow8_A WD repeat-containing pr 100.0 9E-31 3.1E-35 213.9 25.0 192 1-194 98-319 (321)
6 1got_B GT-beta; complex (GTP-b 100.0 7.5E-30 2.6E-34 209.6 27.6 218 1-221 73-325 (340)
7 1vyh_C Platelet-activating fac 100.0 5E-30 1.7E-34 216.0 25.3 193 1-195 168-410 (410)
8 1got_B GT-beta; complex (GTP-b 100.0 9.4E-30 3.2E-34 209.1 24.7 176 1-193 160-340 (340)
9 3frx_A Guanine nucleotide-bind 100.0 9.7E-30 3.3E-34 207.3 24.5 205 1-222 36-251 (319)
10 4ggc_A P55CDC, cell division c 100.0 1.7E-29 5.9E-34 203.8 24.7 195 2-198 42-317 (318)
11 3iz6_a 40S ribosomal protein R 100.0 1.8E-29 6.1E-34 210.5 23.7 196 1-198 84-377 (380)
12 2pbi_B Guanine nucleotide-bind 100.0 4E-29 1.4E-33 206.6 24.6 180 1-193 172-354 (354)
13 2pbi_B Guanine nucleotide-bind 100.0 1.2E-28 4.1E-33 203.8 27.3 219 1-222 82-340 (354)
14 4gqb_B Methylosome protein 50; 100.0 2.9E-29 1E-33 207.0 23.6 181 1-198 145-333 (344)
15 4gga_A P55CDC, cell division c 100.0 4.1E-29 1.4E-33 210.7 24.6 199 2-202 122-401 (420)
16 3frx_A Guanine nucleotide-bind 100.0 7.6E-29 2.6E-33 202.0 24.8 194 1-197 83-318 (319)
17 4aow_A Guanine nucleotide-bind 100.0 1.8E-28 6E-33 199.7 26.6 195 1-198 57-339 (340)
18 4g56_B MGC81050 protein; prote 100.0 2.6E-29 8.9E-34 208.0 20.7 194 1-197 111-344 (357)
19 4ery_A WD repeat-containing pr 100.0 2.9E-28 9.9E-33 197.2 25.7 218 1-221 41-292 (312)
20 1erj_A Transcriptional repress 100.0 4.4E-28 1.5E-32 202.9 26.5 191 1-208 141-353 (393)
21 2xzm_R RACK1; ribosome, transl 100.0 3.7E-28 1.2E-32 199.7 25.2 178 1-196 45-244 (343)
22 2pm7_B Protein transport prote 100.0 2.2E-28 7.4E-33 197.4 23.2 183 1-198 27-240 (297)
23 2xzm_R RACK1; ribosome, transl 100.0 3.8E-28 1.3E-32 199.6 22.6 193 1-197 94-341 (343)
24 1nr0_A Actin interacting prote 100.0 3E-28 1E-32 214.9 22.7 185 1-202 166-361 (611)
25 4ery_A WD repeat-containing pr 100.0 2.3E-27 7.7E-32 192.0 25.7 195 1-195 83-311 (312)
26 2ynn_A Coatomer subunit beta'; 100.0 5.9E-27 2E-31 189.5 26.5 193 1-196 73-302 (304)
27 2w18_A PALB2, fancn, partner a 100.0 2E-27 6.9E-32 193.3 23.2 187 6-194 136-355 (356)
28 2ymu_A WD-40 repeat protein; u 100.0 3.5E-27 1.2E-31 205.5 24.9 186 2-193 363-577 (577)
29 2ymu_A WD-40 repeat protein; u 100.0 7.5E-27 2.6E-31 203.3 26.5 213 2-222 322-563 (577)
30 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.2E-27 1.8E-31 193.2 23.9 198 1-200 79-339 (345)
31 3dm0_A Maltose-binding peripla 100.0 2.4E-27 8.1E-32 211.8 23.2 202 1-221 401-615 (694)
32 3iz6_a 40S ribosomal protein R 100.0 1.8E-27 6.1E-32 198.4 20.7 199 6-205 47-289 (380)
33 3bg1_A Protein SEC13 homolog; 100.0 6.5E-28 2.2E-32 196.3 17.6 181 1-196 31-247 (316)
34 2hes_X YDR267CP; beta-propelle 100.0 5.3E-27 1.8E-31 192.0 22.9 180 1-197 30-231 (330)
35 3zwl_B Eukaryotic translation 100.0 6.9E-27 2.3E-31 191.7 23.5 202 1-221 50-272 (369)
36 1nr0_A Actin interacting prote 100.0 4.6E-27 1.6E-31 207.3 24.0 198 3-204 37-278 (611)
37 4h5i_A Guanine nucleotide-exch 100.0 9.2E-27 3.2E-31 193.3 24.4 206 1-222 100-326 (365)
38 3dwl_C Actin-related protein 2 100.0 3.4E-28 1.1E-32 201.4 14.7 201 1-220 29-263 (377)
39 3fm0_A Protein CIAO1; WDR39,SG 100.0 7E-27 2.4E-31 192.4 22.4 178 1-195 34-224 (345)
40 4h5i_A Guanine nucleotide-exch 100.0 1.1E-26 3.8E-31 192.9 22.5 176 2-196 154-343 (365)
41 4g56_B MGC81050 protein; prote 100.0 1.2E-26 4.1E-31 192.1 22.1 197 4-203 69-308 (357)
42 1gxr_A ESG1, transducin-like e 100.0 7.8E-26 2.7E-30 183.4 26.4 198 4-204 71-304 (337)
43 3dm0_A Maltose-binding peripla 100.0 2E-26 6.9E-31 205.8 25.1 192 1-195 448-692 (694)
44 4aez_A CDC20, WD repeat-contai 100.0 3.5E-26 1.2E-30 191.6 25.0 197 2-202 153-386 (401)
45 1erj_A Transcriptional repress 100.0 5.1E-26 1.7E-30 190.4 25.2 179 3-198 83-289 (393)
46 2pm9_A Protein WEB1, protein t 100.0 1.5E-26 5E-31 193.4 21.5 197 2-200 86-341 (416)
47 3f3f_A Nucleoporin SEH1; struc 100.0 5E-26 1.7E-30 184.5 23.8 203 1-205 29-346 (351)
48 2hes_X YDR267CP; beta-propelle 100.0 2.2E-26 7.6E-31 188.3 21.7 193 1-196 76-328 (330)
49 3vl1_A 26S proteasome regulato 100.0 1.4E-26 4.9E-31 194.0 21.1 190 1-205 115-332 (420)
50 3odt_A Protein DOA1; ubiquitin 100.0 5E-26 1.7E-30 182.9 23.3 212 1-221 35-279 (313)
51 4e54_B DNA damage-binding prot 99.9 1.7E-26 5.7E-31 195.7 20.9 184 1-201 138-332 (435)
52 3ei3_B DNA damage-binding prot 99.9 4.9E-26 1.7E-30 189.0 22.5 217 1-222 92-366 (383)
53 1gxr_A ESG1, transducin-like e 99.9 3.4E-25 1.2E-29 179.6 26.2 190 2-194 116-335 (337)
54 1k8k_C P40, ARP2/3 complex 41 99.9 7.4E-26 2.5E-30 186.3 22.4 201 2-220 27-256 (372)
55 3k26_A Polycomb protein EED; W 99.9 1.1E-26 3.6E-31 190.6 17.1 202 1-221 91-348 (366)
56 3mmy_A MRNA export factor; mRN 99.9 1.2E-25 4.1E-30 184.2 23.4 206 1-222 60-329 (368)
57 4aow_A Guanine nucleotide-bind 99.9 2.2E-25 7.4E-30 181.3 24.7 193 13-205 26-255 (340)
58 3i2n_A WD repeat-containing pr 99.9 3.3E-26 1.1E-30 187.2 19.9 196 1-198 86-355 (357)
59 3v7d_B Cell division control p 99.9 3.1E-25 1.1E-29 188.6 26.5 196 1-203 138-388 (464)
60 2j04_B YDR362CP, TAU91; beta p 99.9 4.9E-26 1.7E-30 197.4 21.3 211 1-221 179-410 (524)
61 1r5m_A SIR4-interacting protei 99.9 1.7E-25 5.8E-30 186.7 22.7 216 1-220 64-342 (425)
62 2pm9_A Protein WEB1, protein t 99.9 1.4E-25 4.7E-30 187.5 22.0 215 2-220 42-317 (416)
63 1r5m_A SIR4-interacting protei 99.9 2E-25 6.8E-30 186.3 23.0 217 1-221 126-407 (425)
64 3mkq_A Coatomer beta'-subunit; 99.9 1.1E-25 3.7E-30 203.3 22.6 218 2-220 32-282 (814)
65 3lrv_A PRE-mRNA-splicing facto 99.9 3.3E-26 1.1E-30 187.9 17.5 181 1-204 54-252 (343)
66 3jrp_A Fusion protein of prote 99.9 1.6E-25 5.6E-30 184.3 21.6 183 1-198 29-242 (379)
67 2aq5_A Coronin-1A; WD40 repeat 99.9 3E-25 1E-29 185.7 23.4 182 1-199 53-257 (402)
68 3zwl_B Eukaryotic translation 99.9 1.3E-24 4.4E-29 178.1 26.3 195 1-198 92-348 (369)
69 2pm7_B Protein transport prote 99.9 4.4E-25 1.5E-29 177.9 22.8 182 1-197 73-286 (297)
70 1sq9_A Antiviral protein SKI8; 99.9 2.8E-25 9.6E-30 184.7 21.9 186 1-204 87-330 (397)
71 2j04_B YDR362CP, TAU91; beta p 99.9 3.5E-26 1.2E-30 198.3 16.8 178 1-196 231-428 (524)
72 3dw8_B Serine/threonine-protei 99.9 1.1E-25 3.9E-30 189.8 19.2 191 1-207 46-327 (447)
73 3i2n_A WD repeat-containing pr 99.9 5.4E-25 1.8E-29 180.0 22.3 194 3-198 42-293 (357)
74 3gre_A Serine/threonine-protei 99.9 2.7E-25 9.1E-30 187.6 20.5 203 1-205 82-368 (437)
75 2aq5_A Coronin-1A; WD40 repeat 99.9 5.3E-25 1.8E-29 184.2 21.9 204 1-220 100-325 (402)
76 3vu4_A KMHSV2; beta-propeller 99.9 3.8E-25 1.3E-29 182.8 20.7 206 9-222 3-254 (355)
77 3gre_A Serine/threonine-protei 99.9 7.5E-25 2.6E-29 184.8 22.8 180 9-204 47-253 (437)
78 4a11_B DNA excision repair pro 99.9 1.5E-24 5.1E-29 180.2 24.3 200 1-202 62-371 (408)
79 1sq9_A Antiviral protein SKI8; 99.9 7.9E-25 2.7E-29 182.0 20.7 180 1-198 144-397 (397)
80 4a11_B DNA excision repair pro 99.9 2.9E-24 9.8E-29 178.5 23.6 181 3-198 21-220 (408)
81 3bg1_A Protein SEC13 homolog; 99.9 6.8E-25 2.3E-29 178.4 18.7 182 1-197 77-294 (316)
82 4gq1_A NUP37; propeller, trans 99.9 1.2E-25 4.2E-30 188.2 14.6 214 1-223 107-374 (393)
83 3v7d_B Cell division control p 99.9 3.8E-24 1.3E-28 181.9 23.9 196 1-202 179-427 (464)
84 3sfz_A APAF-1, apoptotic pepti 99.9 3.6E-25 1.2E-29 208.5 19.0 201 1-203 858-1165(1249)
85 3vl1_A 26S proteasome regulato 99.9 6.2E-25 2.1E-29 184.1 17.9 179 1-197 157-366 (420)
86 3ei3_B DNA damage-binding prot 99.9 2.2E-24 7.4E-29 179.1 20.8 178 1-196 181-382 (383)
87 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.4E-23 4.7E-28 177.8 25.7 195 1-205 135-357 (445)
88 1p22_A F-BOX/WD-repeat protein 99.9 1.3E-23 4.3E-28 177.8 24.6 188 1-198 149-367 (435)
89 4aez_A CDC20, WD repeat-contai 99.9 2.4E-23 8.2E-28 174.3 25.6 199 1-220 109-315 (401)
90 2vdu_B TRNA (guanine-N(7)-)-me 99.9 9.2E-24 3.1E-28 179.5 23.1 186 2-204 22-279 (450)
91 1yfq_A Cell cycle arrest prote 99.9 1.2E-24 4.2E-29 177.2 17.0 186 1-206 75-292 (342)
92 3odt_A Protein DOA1; ubiquitin 99.9 9.9E-24 3.4E-28 169.5 21.9 193 1-201 77-301 (313)
93 3k26_A Polycomb protein EED; W 99.9 9.3E-25 3.2E-29 179.0 16.1 179 1-196 134-366 (366)
94 3lrv_A PRE-mRNA-splicing facto 99.9 1E-23 3.5E-28 173.1 21.6 180 1-198 91-294 (343)
95 2xyi_A Probable histone-bindin 99.9 1.7E-23 5.7E-28 177.1 23.5 195 1-197 147-411 (430)
96 2ovr_B FBW7, F-BOX/WD repeat p 99.9 2.2E-23 7.6E-28 176.6 23.9 212 1-222 175-421 (445)
97 2oaj_A Protein SNI1; WD40 repe 99.9 6.6E-24 2.2E-28 194.7 21.9 181 1-201 35-247 (902)
98 1l0q_A Surface layer protein; 99.9 6.5E-23 2.2E-27 170.3 24.9 200 2-221 9-212 (391)
99 1p22_A F-BOX/WD-repeat protein 99.9 1.5E-23 5E-28 177.4 21.3 190 1-200 189-418 (435)
100 3jro_A Fusion protein of prote 99.9 8.1E-24 2.8E-28 190.8 20.7 183 1-198 27-240 (753)
101 4e54_B DNA damage-binding prot 99.9 1.6E-23 5.6E-28 177.3 21.0 193 14-221 108-309 (435)
102 1k8k_C P40, ARP2/3 complex 41 99.9 1.3E-23 4.6E-28 172.7 19.8 195 1-198 70-363 (372)
103 1pgu_A Actin interacting prote 99.9 3.2E-23 1.1E-27 181.1 22.9 182 3-203 37-245 (615)
104 3jrp_A Fusion protein of prote 99.9 4E-23 1.4E-27 170.0 22.1 187 1-202 75-293 (379)
105 3sfz_A APAF-1, apoptotic pepti 99.9 2.6E-23 8.8E-28 195.9 23.1 193 1-195 675-912 (1249)
106 1l0q_A Surface layer protein; 99.9 5.8E-22 2E-26 164.6 28.5 201 2-206 51-285 (391)
107 3dwl_C Actin-related protein 2 99.9 4.8E-24 1.7E-28 176.3 15.4 177 1-195 73-280 (377)
108 1pgu_A Actin interacting prote 99.9 1.2E-23 4E-28 183.9 18.6 211 2-221 316-597 (615)
109 3bws_A Protein LP49; two-domai 99.9 1.8E-22 6E-27 169.9 24.6 216 2-222 141-414 (433)
110 3vu4_A KMHSV2; beta-propeller 99.9 1.1E-22 3.8E-27 168.0 22.8 173 1-198 77-273 (355)
111 3dw8_B Serine/threonine-protei 99.9 1.9E-23 6.6E-28 176.1 18.7 182 1-201 113-378 (447)
112 2w18_A PALB2, fancn, partner a 99.9 2.3E-22 7.9E-27 163.6 24.0 215 4-223 62-341 (356)
113 3f3f_A Nucleoporin SEH1; struc 99.9 1.3E-22 4.4E-27 164.4 21.0 177 19-197 5-250 (351)
114 4gq1_A NUP37; propeller, trans 99.9 5E-23 1.7E-27 172.3 18.6 179 1-194 162-387 (393)
115 1yfq_A Cell cycle arrest prote 99.9 7.5E-23 2.6E-27 166.6 17.8 186 1-206 29-241 (342)
116 3mkq_A Coatomer beta'-subunit; 99.9 4.1E-22 1.4E-26 180.0 23.5 186 16-218 4-194 (814)
117 2vdu_B TRNA (guanine-N(7)-)-me 99.9 9.6E-22 3.3E-26 167.0 22.0 186 2-205 122-353 (450)
118 3mmy_A MRNA export factor; mRN 99.9 5.3E-22 1.8E-26 162.4 18.5 177 1-195 104-345 (368)
119 3jro_A Fusion protein of prote 99.9 8.8E-22 3E-26 177.5 20.2 184 1-199 73-288 (753)
120 2j04_A TAU60, YPL007P, hypothe 99.9 1.3E-21 4.4E-26 168.5 19.9 170 1-195 103-296 (588)
121 3bws_A Protein LP49; two-domai 99.9 1.9E-20 6.5E-25 157.4 25.6 192 2-196 188-432 (433)
122 2oaj_A Protein SNI1; WD40 repe 99.9 1.7E-21 5.9E-26 178.7 20.4 166 21-205 13-191 (902)
123 2j04_A TAU60, YPL007P, hypothe 99.9 3.8E-21 1.3E-25 165.6 19.1 186 1-200 33-258 (588)
124 2xyi_A Probable histone-bindin 99.9 4.3E-20 1.5E-24 156.1 22.5 183 12-196 114-353 (430)
125 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.9E-19 6.6E-24 151.7 23.0 196 5-222 159-367 (415)
126 3u4y_A Uncharacterized protein 99.8 7.7E-18 2.6E-22 136.6 25.8 202 2-222 17-234 (331)
127 1nir_A Nitrite reductase; hemo 99.8 3.1E-18 1E-22 149.2 24.4 186 2-204 156-363 (543)
128 1pby_B Quinohemoprotein amine 99.8 1.1E-17 3.6E-22 135.5 22.1 198 2-221 8-292 (337)
129 4ggc_A P55CDC, cell division c 99.8 1.4E-17 4.7E-22 133.8 21.2 142 54-199 38-184 (318)
130 2hqs_A Protein TOLB; TOLB, PAL 99.8 1.7E-17 6E-22 139.7 22.2 176 5-199 203-390 (415)
131 2ojh_A Uncharacterized protein 99.8 5.2E-17 1.8E-21 128.5 22.8 217 2-222 19-285 (297)
132 1xfd_A DIP, dipeptidyl aminope 99.8 9.4E-18 3.2E-22 149.9 18.5 213 2-221 34-318 (723)
133 3vgz_A Uncharacterized protein 99.8 1.7E-16 5.9E-21 129.4 24.0 202 3-222 109-327 (353)
134 3vgz_A Uncharacterized protein 99.8 9.8E-17 3.3E-21 130.8 22.5 198 4-221 68-284 (353)
135 4gga_A P55CDC, cell division c 99.8 4.6E-17 1.6E-21 137.0 20.5 172 2-175 206-416 (420)
136 1pby_B Quinohemoprotein amine 99.8 2.3E-16 8E-21 127.5 22.7 184 3-205 54-319 (337)
137 1jmx_B Amine dehydrogenase; ox 99.7 3.3E-16 1.1E-20 127.4 21.3 197 2-221 18-307 (349)
138 1z68_A Fibroblast activation p 99.7 7.1E-18 2.4E-22 150.8 11.9 195 3-203 34-298 (719)
139 2oit_A Nucleoporin 214KDA; NH2 99.7 2.2E-17 7.5E-22 140.0 14.1 148 52-203 48-229 (434)
140 1nir_A Nitrite reductase; hemo 99.7 7E-16 2.4E-20 134.3 23.7 202 2-223 197-435 (543)
141 2ecf_A Dipeptidyl peptidase IV 99.7 6.3E-17 2.2E-21 145.0 17.3 199 6-221 65-349 (741)
142 3u4y_A Uncharacterized protein 99.7 5.6E-16 1.9E-20 125.5 21.4 178 4-199 61-255 (331)
143 2z3z_A Dipeptidyl aminopeptida 99.7 1.6E-16 5.6E-21 141.6 19.0 201 3-222 43-325 (706)
144 1jmx_B Amine dehydrogenase; ox 99.7 9.3E-16 3.2E-20 124.7 20.4 195 3-205 63-334 (349)
145 1ri6_A Putative isomerase YBHE 99.7 2E-15 6.8E-20 122.3 21.2 177 2-196 12-209 (343)
146 2oiz_A Aromatic amine dehydrog 99.7 3.2E-15 1.1E-19 123.7 22.4 198 3-221 29-360 (361)
147 1ri6_A Putative isomerase YBHE 99.7 3.4E-15 1.2E-19 120.9 21.3 201 4-221 59-289 (343)
148 3o4h_A Acylamino-acid-releasin 99.7 2.7E-16 9.3E-21 137.5 15.8 188 4-200 43-278 (582)
149 2oit_A Nucleoporin 214KDA; NH2 99.7 3.4E-15 1.2E-19 126.5 18.6 166 24-207 91-291 (434)
150 3hfq_A Uncharacterized protein 99.7 2.5E-14 8.7E-19 116.8 21.3 202 4-222 62-299 (347)
151 2ojh_A Uncharacterized protein 99.7 3.6E-15 1.2E-19 117.9 15.0 183 3-187 60-293 (297)
152 3scy_A Hypothetical bacterial 99.6 8.6E-14 2.9E-18 114.3 23.4 218 3-222 25-319 (361)
153 2z3z_A Dipeptidyl aminopeptida 99.6 2E-15 6.9E-20 134.6 14.3 185 3-204 99-351 (706)
154 2ecf_A Dipeptidyl peptidase IV 99.6 8E-15 2.7E-19 131.3 17.1 178 25-221 36-298 (741)
155 1k32_A Tricorn protease; prote 99.6 4.8E-15 1.6E-19 138.0 15.6 196 4-221 264-484 (1045)
156 1k32_A Tricorn protease; prote 99.6 6.2E-14 2.1E-18 130.5 22.0 211 5-223 183-435 (1045)
157 3hfq_A Uncharacterized protein 99.6 6.7E-13 2.3E-17 108.3 23.9 184 3-201 106-324 (347)
158 4a5s_A Dipeptidyl peptidase 4 99.6 1.6E-14 5.3E-19 130.0 14.8 189 4-198 35-296 (740)
159 3scy_A Hypothetical bacterial 99.6 1.5E-13 5.2E-18 112.8 19.5 184 3-201 118-344 (361)
160 1xfd_A DIP, dipeptidyl aminope 99.6 5.6E-15 1.9E-19 131.9 10.6 178 27-223 18-269 (723)
161 3o4h_A Acylamino-acid-releasin 99.5 2.6E-13 8.8E-18 118.6 17.2 175 25-205 21-235 (582)
162 3dsm_A Uncharacterized protein 99.5 1.7E-12 5.9E-17 105.8 20.4 200 2-222 14-238 (328)
163 3fvz_A Peptidyl-glycine alpha- 99.5 2.6E-12 8.9E-17 104.6 21.1 201 4-220 68-303 (329)
164 1jof_A Carboxy-CIS,CIS-muconat 99.5 2E-12 7E-17 106.6 20.7 180 3-197 117-342 (365)
165 3no2_A Uncharacterized protein 99.5 9.3E-12 3.2E-16 99.2 21.4 181 1-204 11-203 (276)
166 3dsm_A Uncharacterized protein 99.5 1E-11 3.5E-16 101.2 21.0 194 3-218 62-276 (328)
167 3pe7_A Oligogalacturonate lyas 99.5 4.5E-12 1.5E-16 104.6 19.2 199 8-222 13-251 (388)
168 1jof_A Carboxy-CIS,CIS-muconat 99.5 5.4E-12 1.8E-16 104.1 19.6 200 6-223 15-269 (365)
169 3azo_A Aminopeptidase; POP fam 99.5 3.1E-12 1.1E-16 113.2 18.0 184 2-202 44-280 (662)
170 1q7f_A NHL, brain tumor CG1071 99.4 4.6E-11 1.6E-15 94.8 22.3 197 4-222 50-264 (286)
171 1z68_A Fibroblast activation p 99.4 8E-13 2.7E-17 118.1 13.3 129 55-186 29-189 (719)
172 1qks_A Cytochrome CD1 nitrite 99.4 1.4E-10 4.7E-15 101.3 26.5 185 3-204 175-381 (567)
173 1q7f_A NHL, brain tumor CG1071 99.4 4.6E-11 1.6E-15 94.8 21.7 174 4-199 99-283 (286)
174 3e5z_A Putative gluconolactona 99.4 1.5E-10 5.1E-15 92.4 24.1 189 3-216 48-263 (296)
175 3pe7_A Oligogalacturonate lyas 99.4 1.7E-11 5.7E-16 101.2 18.8 179 6-202 61-279 (388)
176 2dg1_A DRP35, lactonase; beta 99.4 2.7E-10 9.2E-15 92.2 25.1 199 3-220 64-291 (333)
177 4a5s_A Dipeptidyl peptidase 4 99.4 4.6E-12 1.6E-16 113.9 15.9 141 26-186 17-191 (740)
178 3no2_A Uncharacterized protein 99.4 5.7E-11 1.9E-15 94.6 20.0 150 52-205 5-163 (276)
179 3azo_A Aminopeptidase; POP fam 99.4 1.5E-11 5.2E-16 108.8 18.1 165 16-198 115-327 (662)
180 2dg1_A DRP35, lactonase; beta 99.4 1.9E-10 6.6E-15 93.1 22.1 200 2-222 24-246 (333)
181 3e5z_A Putative gluconolactona 99.4 2.6E-10 8.9E-15 91.0 21.4 190 15-223 17-232 (296)
182 3fvz_A Peptidyl-glycine alpha- 99.3 1.5E-10 5.3E-15 94.1 19.3 174 4-196 111-322 (329)
183 2gop_A Trilobed protease; beta 99.3 4.1E-10 1.4E-14 91.5 18.7 181 6-203 86-298 (347)
184 3c5m_A Oligogalacturonate lyas 99.3 8.5E-11 2.9E-15 96.9 14.8 149 52-202 92-279 (396)
185 2mad_H Methylamine dehydrogena 99.3 4.8E-09 1.6E-13 87.0 24.4 189 6-203 48-357 (373)
186 2gop_A Trilobed protease; beta 99.2 4.1E-10 1.4E-14 91.5 16.2 165 4-201 42-256 (347)
187 3c5m_A Oligogalacturonate lyas 99.2 2.2E-10 7.6E-15 94.4 14.3 139 59-200 165-333 (396)
188 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 3.9E-09 1.3E-13 84.4 20.9 198 3-221 44-280 (314)
189 2xdw_A Prolyl endopeptidase; a 99.2 1.9E-09 6.5E-14 96.4 20.6 211 6-220 152-391 (710)
190 1rwi_B Serine/threonine-protei 99.2 4.6E-09 1.6E-13 82.2 18.7 165 52-221 78-246 (270)
191 1xip_A Nucleoporin NUP159; bet 99.2 9.3E-10 3.2E-14 91.5 14.6 134 52-199 49-194 (388)
192 1rwi_B Serine/threonine-protei 99.2 9.4E-09 3.2E-13 80.4 19.8 145 52-198 119-266 (270)
193 2oiz_A Aromatic amine dehydrog 99.1 7.2E-09 2.4E-13 85.5 19.7 171 4-178 80-360 (361)
194 3c75_H MADH, methylamine dehyd 99.1 5.1E-09 1.7E-13 88.1 18.6 192 5-204 99-410 (426)
195 2bkl_A Prolyl endopeptidase; m 99.1 1.1E-08 3.7E-13 91.3 20.9 198 2-220 144-374 (695)
196 2z2n_A Virginiamycin B lyase; 99.1 7.9E-08 2.7E-12 75.9 23.1 164 52-222 68-238 (299)
197 1mda_H Methylamine dehydrogena 99.1 6.7E-09 2.3E-13 85.9 16.9 181 6-204 47-354 (368)
198 3g4e_A Regucalcin; six bladed 99.0 1.9E-07 6.5E-12 74.6 23.5 180 4-205 34-238 (297)
199 3sjl_D Methylamine dehydrogena 99.0 9.1E-08 3.1E-12 79.3 21.1 190 3-204 57-266 (386)
200 2hz6_A Endoplasmic reticulum t 99.0 8.2E-11 2.8E-15 97.5 2.8 179 2-204 16-200 (369)
201 3hrp_A Uncharacterized protein 99.0 5.6E-08 1.9E-12 81.5 19.9 147 52-200 182-358 (409)
202 1qks_A Cytochrome CD1 nitrite 99.0 3E-07 1E-11 80.2 24.9 201 2-222 215-453 (567)
203 2qc5_A Streptogramin B lactona 99.0 5.1E-07 1.7E-11 71.2 24.1 164 52-222 73-243 (300)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 1.3E-07 4.5E-12 75.4 20.6 134 62-196 153-299 (314)
205 2xdw_A Prolyl endopeptidase; a 99.0 9.7E-08 3.3E-12 85.4 21.6 181 6-198 209-416 (710)
206 2qe8_A Uncharacterized protein 99.0 5.6E-08 1.9E-12 79.4 18.3 162 61-222 92-304 (343)
207 2z2n_A Virginiamycin B lyase; 99.0 4.5E-07 1.5E-11 71.5 23.1 181 21-222 10-196 (299)
208 2qc5_A Streptogramin B lactona 99.0 9.9E-07 3.4E-11 69.5 25.0 165 52-223 115-286 (300)
209 2bkl_A Prolyl endopeptidase; m 99.0 4.6E-08 1.6E-12 87.3 18.2 178 7-204 204-404 (695)
210 3mbr_X Glutamine cyclotransfer 98.9 2.7E-07 9.4E-12 71.5 19.9 168 16-205 10-188 (243)
211 3nok_A Glutaminyl cyclase; bet 98.9 9.5E-08 3.2E-12 74.8 17.3 148 52-205 65-219 (268)
212 2iwa_A Glutamine cyclotransfer 98.9 3.9E-07 1.4E-11 71.8 20.4 171 14-205 8-190 (266)
213 3nol_A Glutamine cyclotransfer 98.9 1.8E-07 6.3E-12 73.1 17.7 149 52-205 53-210 (262)
214 2ghs_A AGR_C_1268P; regucalcin 98.9 1.2E-06 4.1E-11 71.0 22.7 176 5-204 71-267 (326)
215 3dr2_A Exported gluconolactona 98.9 7.2E-07 2.5E-11 71.4 21.0 185 18-222 37-252 (305)
216 1yr2_A Prolyl oligopeptidase; 98.9 1.7E-07 6E-12 84.2 18.7 210 5-220 189-418 (741)
217 2hz6_A Endoplasmic reticulum t 98.8 8.5E-10 2.9E-14 91.4 2.1 146 51-202 8-155 (369)
218 1xip_A Nucleoporin NUP159; bet 98.8 2.6E-07 8.9E-12 76.8 16.6 136 23-185 86-233 (388)
219 1yr2_A Prolyl oligopeptidase; 98.8 6.7E-07 2.3E-11 80.4 20.0 163 23-197 160-351 (741)
220 3g4e_A Regucalcin; six bladed 98.8 1.8E-06 6.2E-11 68.8 20.2 167 53-223 26-213 (297)
221 3hrp_A Uncharacterized protein 98.8 1.8E-06 6E-11 72.4 20.1 142 52-196 142-298 (409)
222 3iuj_A Prolyl endopeptidase; h 98.8 9.6E-07 3.3E-11 78.8 19.5 188 4-198 154-361 (693)
223 2mad_H Methylamine dehydrogena 98.7 2.3E-06 7.8E-11 70.8 19.5 132 63-201 48-200 (373)
224 2ghs_A AGR_C_1268P; regucalcin 98.7 2.8E-06 9.7E-11 68.7 19.4 166 53-223 62-244 (326)
225 3sjl_D Methylamine dehydrogena 98.7 1.1E-06 3.8E-11 72.9 16.9 146 51-200 43-213 (386)
226 1yiq_A Quinohemoprotein alcoho 98.7 2E-06 6.8E-11 76.8 19.6 61 144-205 454-514 (689)
227 2ece_A 462AA long hypothetical 98.7 5.3E-06 1.8E-10 69.7 20.5 142 54-195 150-351 (462)
228 3nok_A Glutaminyl cyclase; bet 98.7 4E-06 1.4E-10 65.7 18.4 161 2-183 72-253 (268)
229 2iwa_A Glutamine cyclotransfer 98.7 7.5E-06 2.6E-10 64.4 20.0 140 55-198 79-239 (266)
230 3dr2_A Exported gluconolactona 98.6 1.2E-05 4.1E-10 64.2 21.2 192 4-221 66-289 (305)
231 1kb0_A Quinohemoprotein alcoho 98.6 4.4E-06 1.5E-10 74.4 20.0 142 63-205 284-516 (677)
232 3nol_A Glutamine cyclotransfer 98.6 8.2E-06 2.8E-10 63.8 18.7 158 6-184 66-243 (262)
233 3hxj_A Pyrrolo-quinoline quino 98.6 1E-05 3.5E-10 64.7 20.1 211 2-223 37-269 (330)
234 1fwx_A Nitrous oxide reductase 98.5 1.3E-05 4.5E-10 69.5 19.4 216 4-223 111-402 (595)
235 2qe8_A Uncharacterized protein 98.5 1.6E-06 5.4E-11 70.7 12.8 173 5-193 93-318 (343)
236 3q7m_A Lipoprotein YFGL, BAMB; 98.5 1.9E-05 6.7E-10 64.7 19.5 148 51-200 102-262 (376)
237 3q7m_A Lipoprotein YFGL, BAMB; 98.5 1.3E-05 4.5E-10 65.7 17.8 143 52-200 143-300 (376)
238 3c75_H MADH, methylamine dehyd 98.5 6.4E-06 2.2E-10 69.3 15.9 142 51-199 83-251 (426)
239 1kb0_A Quinohemoprotein alcoho 98.5 1.4E-05 4.6E-10 71.3 18.2 101 61-161 189-353 (677)
240 3mbr_X Glutamine cyclotransfer 98.4 9.6E-05 3.3E-09 57.2 19.6 159 6-184 44-222 (243)
241 3hxj_A Pyrrolo-quinoline quino 98.4 3.1E-05 1.1E-09 61.9 17.3 160 52-222 147-308 (330)
242 3iuj_A Prolyl endopeptidase; h 98.4 1.3E-05 4.4E-10 71.5 16.2 164 23-199 126-317 (693)
243 1fwx_A Nitrous oxide reductase 98.4 1.3E-05 4.6E-10 69.5 15.2 188 4-198 174-433 (595)
244 2ece_A 462AA long hypothetical 98.3 3.2E-05 1.1E-09 65.0 16.5 170 54-225 98-337 (462)
245 1npe_A Nidogen, entactin; glyc 98.3 0.00061 2.1E-08 53.0 23.8 146 55-204 94-246 (267)
246 1kv9_A Type II quinohemoprotei 98.2 0.00011 3.7E-09 65.4 18.6 61 144-205 437-497 (668)
247 1yiq_A Quinohemoprotein alcoho 98.2 0.00025 8.4E-09 63.3 19.8 151 51-202 120-344 (689)
248 3amr_A 3-phytase; beta-propell 98.1 0.0015 5.2E-08 53.1 21.4 185 4-205 49-273 (355)
249 2ad6_A Methanol dehydrogenase 98.0 0.0023 7.8E-08 55.8 22.1 101 61-161 175-342 (571)
250 1npe_A Nidogen, entactin; glyc 98.0 0.003 1E-07 49.0 22.8 142 55-199 51-201 (267)
251 2p4o_A Hypothetical protein; p 97.9 0.0045 1.5E-07 49.2 22.2 185 14-221 21-224 (306)
252 1mda_H Methylamine dehydrogena 97.9 5.5E-05 1.9E-09 62.4 9.7 132 55-196 35-194 (368)
253 2ad6_A Methanol dehydrogenase 97.9 0.0013 4.6E-08 57.3 18.7 61 144-205 443-503 (571)
254 2fp8_A Strictosidine synthase; 97.9 0.0019 6.4E-08 51.7 17.8 168 52-223 30-243 (322)
255 1w6s_A Methanol dehydrogenase 97.7 0.0075 2.6E-07 52.9 20.2 102 60-161 180-349 (599)
256 1kv9_A Type II quinohemoprotei 97.7 0.0036 1.2E-07 55.6 18.4 152 51-202 116-339 (668)
257 3tc9_A Hypothetical hydrolase; 97.7 0.0016 5.5E-08 54.7 15.1 141 53-195 150-300 (430)
258 1flg_A Protein (quinoprotein e 97.7 0.0053 1.8E-07 53.6 18.7 61 144-205 465-525 (582)
259 4a2l_A BT_4663, two-component 97.6 0.026 8.8E-07 51.0 22.6 141 54-199 322-483 (795)
260 1flg_A Protein (quinoprotein e 97.6 0.0054 1.8E-07 53.6 17.2 81 102-184 466-548 (582)
261 2fp8_A Strictosidine synthase; 97.5 0.021 7.1E-07 45.5 22.7 150 52-205 91-277 (322)
262 2xe4_A Oligopeptidase B; hydro 97.5 0.0053 1.8E-07 55.3 17.1 155 27-196 175-354 (751)
263 4a2l_A BT_4663, two-component 97.5 0.027 9.1E-07 50.9 21.4 159 55-223 420-600 (795)
264 2p9w_A MAL S 1 allergenic prot 97.5 0.017 5.8E-07 46.6 17.8 143 52-196 25-215 (334)
265 1w6s_A Methanol dehydrogenase 97.4 0.012 4.2E-07 51.5 17.7 148 54-204 123-350 (599)
266 3v9f_A Two-component system se 97.3 0.02 6.8E-07 51.6 18.6 162 54-223 419-597 (781)
267 4hw6_A Hypothetical protein, I 97.3 0.0086 2.9E-07 50.3 14.5 141 52-195 152-303 (433)
268 3v65_B Low-density lipoprotein 97.3 0.057 1.9E-06 44.5 21.5 148 54-204 173-326 (386)
269 3qqz_A Putative uncharacterize 97.1 0.057 2E-06 41.9 20.2 185 20-222 21-237 (255)
270 3v9f_A Two-component system se 97.1 0.12 4E-06 46.5 20.6 141 53-198 374-526 (781)
271 3sre_A PON1, serum paraoxonase 97.0 0.062 2.1E-06 43.9 16.3 157 60-223 81-281 (355)
272 3tc9_A Hypothetical hydrolase; 96.9 0.021 7E-07 47.9 13.5 135 83-221 138-282 (430)
273 3kya_A Putative phosphatase; s 96.9 0.074 2.5E-06 45.4 16.9 139 53-194 152-339 (496)
274 1ijq_A LDL receptor, low-densi 96.8 0.14 4.9E-06 40.7 19.4 156 61-219 9-174 (316)
275 3v64_C Agrin; beta propeller, 96.7 0.17 5.8E-06 41.0 22.8 148 53-203 129-282 (349)
276 1k3i_A Galactose oxidase precu 96.7 0.056 1.9E-06 47.7 15.1 65 133-197 409-498 (656)
277 2xe4_A Oligopeptidase B; hydro 96.7 0.055 1.9E-06 48.6 15.2 170 6-194 202-398 (751)
278 3v65_B Low-density lipoprotein 96.7 0.21 7.1E-06 41.1 23.1 141 55-197 131-278 (386)
279 3v64_C Agrin; beta propeller, 96.6 0.22 7.6E-06 40.3 24.8 140 54-196 87-234 (349)
280 3sov_A LRP-6, low-density lipo 96.4 0.28 9.6E-06 39.2 20.0 139 55-196 50-197 (318)
281 1n7d_A LDL receptor, low-densi 96.2 0.07 2.4E-06 47.6 12.7 137 57-196 423-571 (699)
282 1ijq_A LDL receptor, low-densi 96.2 0.35 1.2E-05 38.4 25.7 175 4-196 9-195 (316)
283 4hw6_A Hypothetical protein, I 96.2 0.13 4.5E-06 43.0 13.4 136 83-221 140-285 (433)
284 3pbp_A Nucleoporin NUP82; beta 96.1 0.23 7.7E-06 41.5 13.9 106 88-196 27-158 (452)
285 1n7d_A LDL receptor, low-densi 95.9 0.17 5.9E-06 45.1 13.8 148 53-203 466-621 (699)
286 2p4o_A Hypothetical protein; p 95.9 0.47 1.6E-05 37.3 17.2 114 81-197 31-148 (306)
287 3qqz_A Putative uncharacterize 95.7 0.44 1.5E-05 36.9 13.5 111 82-195 27-150 (255)
288 3pbp_A Nucleoporin NUP82; beta 95.6 0.83 2.8E-05 38.2 17.8 142 50-194 30-210 (452)
289 4a0p_A LRP6, LRP-6, low-densit 95.6 1.1 3.8E-05 39.4 22.6 146 54-203 94-244 (628)
290 3amr_A 3-phytase; beta-propell 95.6 0.76 2.6E-05 37.4 17.9 139 53-195 41-209 (355)
291 1tl2_A L10, protein (tachylect 95.1 0.61 2.1E-05 35.4 12.1 129 53-189 5-156 (236)
292 2xbg_A YCF48-like protein; pho 95.1 0.99 3.4E-05 35.9 19.6 109 82-193 205-319 (327)
293 3kya_A Putative phosphatase; s 94.8 1.7 5.8E-05 37.1 16.5 148 52-202 259-481 (496)
294 3p5b_L Low density lipoprotein 94.8 1.4 5E-05 36.2 23.0 141 55-197 127-278 (400)
295 3p5b_L Low density lipoprotein 94.6 1.6 5.4E-05 35.9 24.4 148 53-203 172-327 (400)
296 1k3i_A Galactose oxidase precu 94.5 0.74 2.5E-05 40.5 13.2 114 84-198 188-325 (656)
297 3sov_A LRP-6, low-density lipo 94.5 1.5 5E-05 34.9 22.8 147 53-202 92-244 (318)
298 3s94_A LRP-6, low-density lipo 94.4 2.4 8.3E-05 37.1 21.0 144 54-200 98-247 (619)
299 3m0c_C LDL receptor, low-densi 94.4 2.9 9.8E-05 37.9 23.2 148 53-203 484-639 (791)
300 2ism_A Putative oxidoreductase 94.3 1.7 5.8E-05 35.0 14.7 141 28-187 33-224 (352)
301 3m0c_C LDL receptor, low-densi 94.0 3.4 0.00012 37.4 25.5 143 54-198 438-591 (791)
302 3a9g_A Putative uncharacterize 92.9 3.1 0.00011 33.5 15.2 137 27-184 30-216 (354)
303 2be1_A Serine/threonine-protei 92.8 0.44 1.5E-05 38.5 7.9 146 52-198 10-185 (339)
304 2ism_A Putative oxidoreductase 92.6 3.1 0.00011 33.4 12.9 101 82-184 31-153 (352)
305 4a0p_A LRP6, LRP-6, low-densit 92.1 5.8 0.0002 34.8 23.2 140 55-197 52-198 (628)
306 3s94_A LRP-6, low-density lipo 91.2 7.2 0.00025 34.1 20.6 135 60-197 60-203 (619)
307 2xbg_A YCF48-like protein; pho 90.4 5.6 0.00019 31.5 18.3 115 82-202 163-284 (327)
308 2p9w_A MAL S 1 allergenic prot 90.2 6.2 0.00021 31.7 21.2 146 61-208 99-277 (334)
309 3sbq_A Nitrous-oxide reductase 89.8 7.8 0.00027 33.7 12.7 137 63-202 299-483 (638)
310 3ii7_A Kelch-like protein 7; p 89.1 6.5 0.00022 30.4 13.4 142 51-197 101-273 (306)
311 3a9g_A Putative uncharacterize 88.8 8.1 0.00028 31.1 12.1 101 82-184 29-153 (354)
312 2xzh_A Clathrin heavy chain 1; 88.7 8.4 0.00029 31.1 16.4 132 61-198 48-191 (365)
313 2vpj_A Kelch-like protein 12; 88.1 7.6 0.00026 29.9 14.1 142 51-197 112-279 (301)
314 3ei3_A DNA damage-binding prot 87.7 19 0.00066 34.1 16.8 129 61-196 863-999 (1158)
315 3das_A Putative oxidoreductase 87.1 11 0.00036 30.5 18.5 162 21-199 27-236 (347)
316 2xn4_A Kelch-like protein 2; s 86.3 9.7 0.00033 29.3 15.6 149 51-209 108-285 (302)
317 4asc_A Kelch repeat and BTB do 86.1 10 0.00035 29.4 11.5 91 102-197 165-278 (315)
318 1bpo_A Protein (clathrin); cla 85.8 15 0.00051 31.0 15.9 133 61-199 47-191 (494)
319 2vpj_A Kelch-like protein 12; 85.8 10 0.00035 29.1 15.2 143 51-198 62-233 (301)
320 2xn4_A Kelch-like protein 2; s 84.2 12 0.00042 28.7 12.2 141 51-197 61-230 (302)
321 1zgk_A Kelch-like ECH-associat 83.8 13 0.00045 28.7 12.2 91 102-197 184-288 (308)
322 2be1_A Serine/threonine-protei 83.2 3.1 0.0001 33.6 6.6 110 95-204 13-138 (339)
323 1cru_A Protein (soluble quinop 83.1 19 0.00066 30.0 21.7 37 163-200 226-263 (454)
324 1zgk_A Kelch-like ECH-associat 82.8 15 0.0005 28.5 12.2 91 102-197 137-241 (308)
325 1xi4_A Clathrin heavy chain; a 82.8 10 0.00034 36.9 10.6 133 61-199 47-191 (1630)
326 2g8s_A Glucose/sorbosone dehyd 81.5 17 0.0006 29.0 10.6 29 82-110 18-47 (353)
327 3sbq_A Nitrous-oxide reductase 80.9 12 0.0004 32.7 9.5 91 6-111 299-408 (638)
328 3das_A Putative oxidoreductase 78.3 25 0.00085 28.3 10.7 94 129-222 37-153 (347)
329 3ii7_A Kelch-like protein 7; p 77.8 22 0.00074 27.3 14.8 138 55-197 15-179 (306)
330 1cru_A Protein (soluble quinop 77.3 30 0.001 28.8 13.6 102 82-185 27-163 (454)
331 4gq2_M Nucleoporin NUP120; bet 76.0 4.2 0.00014 37.6 5.9 36 167-202 237-272 (950)
332 2xzh_A Clathrin heavy chain 1; 74.8 32 0.0011 27.8 20.0 178 5-202 87-296 (365)
333 4asc_A Kelch repeat and BTB do 73.9 29 0.00097 26.8 14.8 96 103-207 118-228 (315)
334 2uvk_A YJHT; unknown function, 71.5 29 0.001 27.3 9.3 81 102-185 168-261 (357)
335 2woz_A Kelch repeat and BTB do 70.6 35 0.0012 26.4 12.6 147 51-206 109-293 (318)
336 2g8s_A Glucose/sorbosone dehyd 70.5 21 0.00073 28.5 8.3 92 129-222 23-143 (353)
337 4gq2_M Nucleoporin NUP120; bet 69.8 46 0.0016 30.7 11.2 101 128-228 240-350 (950)
338 4fhn_B Nucleoporin NUP120; pro 67.3 5.9 0.0002 37.4 4.8 36 167-202 239-274 (1139)
339 1bpo_A Protein (clathrin); cla 64.9 63 0.0022 27.3 19.0 178 5-202 86-295 (494)
340 3ott_A Two-component system se 63.8 78 0.0027 27.9 19.2 138 54-198 114-262 (758)
341 2woz_A Kelch repeat and BTB do 60.3 56 0.0019 25.1 12.2 93 103-198 128-233 (318)
342 2zwa_A Leucine carboxyl methyl 60.1 91 0.0031 27.5 14.6 146 51-198 397-579 (695)
343 3f7f_A Nucleoporin NUP120; nuc 57.7 11 0.00038 33.6 4.5 31 51-81 230-260 (729)
344 2zwa_A Leucine carboxyl methyl 57.5 1E+02 0.0035 27.2 12.2 146 51-197 451-636 (695)
345 4fhn_B Nucleoporin NUP120; pro 57.5 11 0.00039 35.4 4.8 31 51-81 248-278 (1139)
346 3f7f_A Nucleoporin NUP120; nuc 57.0 16 0.00055 32.6 5.4 31 175-205 229-259 (729)
347 1tl2_A L10, protein (tachylect 56.8 61 0.0021 24.5 11.8 94 85-183 91-199 (236)
348 1xi4_A Clathrin heavy chain; a 51.3 1.9E+02 0.0065 28.5 12.6 35 166-200 259-293 (1630)
349 2uvk_A YJHT; unknown function, 51.3 85 0.0029 24.5 12.1 56 146-203 286-349 (357)
350 3ei3_A DNA damage-binding prot 41.8 2.3E+02 0.008 26.8 22.9 105 52-157 523-641 (1158)
351 3zwu_A Alkaline phosphatase PH 41.6 1.1E+02 0.0039 26.5 8.2 53 131-183 483-548 (592)
352 3sre_A PON1, serum paraoxonase 40.7 1.4E+02 0.0048 23.9 16.3 121 101-223 82-235 (355)
353 3al9_A Plexin-A2; beta-propell 35.1 1.1E+02 0.0037 26.3 7.0 79 134-212 412-509 (539)
354 4a9v_A PHOX; hydrolase, beta-p 34.2 1.9E+02 0.0063 25.2 8.2 55 129-183 481-548 (592)
355 2wg3_C Hedgehog-interacting pr 33.7 2.1E+02 0.0071 23.8 12.1 29 82-110 14-44 (463)
356 1q47_A Semaphorin 3A; beta pro 32.3 1.5E+02 0.005 25.1 7.3 56 136-191 422-487 (495)
357 3q6k_A 43.2 kDa salivary prote 31.6 2.1E+02 0.0071 23.2 18.0 161 63-223 124-338 (381)
358 1ukf_A Avirulence protein AVRP 30.5 7.3 0.00025 28.3 -0.9 62 167-229 120-185 (188)
359 3ott_A Two-component system se 27.9 3.1E+02 0.011 24.0 18.7 141 55-198 386-547 (758)
360 3nvq_A Semaphorin-7A; beta-pro 25.9 2.3E+02 0.0078 24.6 7.4 56 137-192 382-445 (590)
361 3ol2_B Plexin-B1; beta-propell 20.2 4E+02 0.014 22.7 7.8 78 134-211 399-493 (528)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=8.6e-32 Score=218.01 Aligned_cols=206 Identities=19% Similarity=0.271 Sum_probs=172.2
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc---------------------------CCC
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------NNT 53 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~~ 53 (231)
++.||+|++|+..+++.+.++.+|...|.++.|+|+++.+++++.|..++ ++.
T Consensus 31 ~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 110 (304)
T 2ynn_A 31 TLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP 110 (304)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred EcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCC
Confidence 36799999999999999999999999999999999999999998875332 678
Q ss_pred EEEEEeCCCCEEEEeCCCCCce-EEEE-eCCcceeEEEcc-CCCEEEE-EcCCeEEEEECCCcceEEeeec--cceeEEE
Q psy6442 54 RLISCAEDKTVRLWDVSASAEV-QKLE-FGAVPNSLEISR-DGTTITV-THGSCVTFLDANSLELIKEHKV--PAQVHSA 127 (231)
Q Consensus 54 ~l~s~s~D~ti~iwd~~~~~~~-~~~~-~~~~~~~v~~~~-~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~ 127 (231)
.|+|++.|++|++||+..+... ..+. +...+.+++|+| ++..++. +.++.+++||............ ...+...
T Consensus 111 ~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~ 190 (304)
T 2ynn_A 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190 (304)
T ss_dssp EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEE
T ss_pred EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEE
Confidence 8999999999999999877443 3333 456789999999 4565554 5689999999876655443332 2345555
Q ss_pred EEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeecc
Q psy6442 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCI 206 (231)
Q Consensus 128 ~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~ 206 (231)
.+.+.+++.++++++.|++|++||+++++.+.++.+|...|.+++|+|++++|+|++.|++|+|||+.+++....++..
T Consensus 191 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~ 269 (304)
T 2ynn_A 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (304)
T ss_dssp EECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence 5555568889999999999999999999999999999999999999999999999999999999999999988777643
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-31 Score=225.66 Aligned_cols=216 Identities=24% Similarity=0.346 Sum_probs=180.9
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc---------------------------CCC
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------NNT 53 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~~ 53 (231)
++.||+|++|+..+|+.+.++++|.+.|.+++|+|+++.+++++.|..++ ++.
T Consensus 126 ~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~ 205 (410)
T 1vyh_C 126 ASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205 (410)
T ss_dssp EESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSS
T ss_pred EeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCC
Confidence 46899999999999999999999999999999999999999998774332 567
Q ss_pred EEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeecc-ceeEEEEEE
Q psy6442 54 RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVP-AQVHSASLL 130 (231)
Q Consensus 54 ~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~ 130 (231)
.|+|++.|++|++||+.++.++..+. +...+..+.++|++..++. +.++.+++||..+......+..+ ..+.++.+
T Consensus 206 ~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~- 284 (410)
T 1vyh_C 206 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW- 284 (410)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEE-
Confidence 89999999999999999999887775 4567899999999997765 46889999999888776665443 34555444
Q ss_pred ecCC--------------------CCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEE
Q psy6442 131 LNSE--------------------RPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLR 190 (231)
Q Consensus 131 ~~~~--------------------~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~ 190 (231)
+|+ +.++++|+.|++|++||+.++..+..+.+|...|++++|+|++++|+|++.|++|+
T Consensus 285 -~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~ 363 (410)
T 1vyh_C 285 -APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR 363 (410)
T ss_dssp -CCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEE
T ss_pred -cCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 443 66899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCeeeeeeccCCcccCCCCCCcc
Q psy6442 191 LWQTNVGKTYGLWKCIEGGLNNSLGLDSS 219 (231)
Q Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (231)
|||+.+++....+....+. ...+++.++
T Consensus 364 vwd~~~~~~~~~~~~h~~~-v~~l~~~~~ 391 (410)
T 1vyh_C 364 VWDYKNKRCMKTLNAHEHF-VTSLDFHKT 391 (410)
T ss_dssp EECCTTSCCCEEEECCSSC-EEEEEECSS
T ss_pred EEECCCCceEEEEcCCCCc-EEEEEEcCC
Confidence 9999999887777654332 233444443
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.3e-31 Score=215.76 Aligned_cols=217 Identities=18% Similarity=0.241 Sum_probs=180.8
Q ss_pred CCcCCCceeeeccCCCe--EeeeecccccEEEEEECCCCceeEecccccccc---------------------------C
Q psy6442 1 MCVDGKPMLRQGDTGDW--IGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------N 51 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~--i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~ 51 (231)
++.|++|++|+..+++. ..++.+|...|.+++|++++..+++++.|..++ +
T Consensus 54 gs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spd 133 (321)
T 3ow8_A 54 GSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD 133 (321)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTT
T ss_pred EcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCC
Confidence 47899999999877764 556899999999999999999999998764332 6
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeecc-ceeEEEE
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVP-AQVHSAS 128 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~ 128 (231)
++.|++++.|++|++||+.+++....+.. ...+.+++|+|+++.++.+ .++.+++||..+.+.+..+..+ .++..+.
T Consensus 134 g~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 213 (321)
T 3ow8_A 134 SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 213 (321)
T ss_dssp SSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEE
T ss_pred CCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEE
Confidence 78899999999999999999888777654 4568999999999987764 5789999999988887776543 3555555
Q ss_pred EEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCC
Q psy6442 129 LLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEG 208 (231)
Q Consensus 129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~ 208 (231)
+ +|++.++++++.|++|++||++++..+..+.+|...|.+++|+|++.+|++++.|++|+|||+.+++....+.....
T Consensus 214 ~--spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~ 291 (321)
T 3ow8_A 214 F--SPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD 291 (321)
T ss_dssp E--CTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred E--cCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC
Confidence 4 88999999999999999999999999999999999999999999999999999999999999999988777654332
Q ss_pred cccCCCCCCccc
Q psy6442 209 GLNNSLGLDSSG 220 (231)
Q Consensus 209 ~~~~~~~~~~~~ 220 (231)
. ...+++.++|
T Consensus 292 ~-v~~v~~s~~g 302 (321)
T 3ow8_A 292 Q-VWGVKYNGNG 302 (321)
T ss_dssp C-EEEEEECTTS
T ss_pred c-EEEEEECCCC
Confidence 2 2334444444
No 4
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3e-31 Score=218.85 Aligned_cols=184 Identities=18% Similarity=0.214 Sum_probs=151.7
Q ss_pred CCcCCCceeeeccCCCeEee----eecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceE
Q psy6442 1 MCVDGKPMLRQGDTGDWIGT----FEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQ 76 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~----l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~ 76 (231)
++.||+|+||+..+++.+.. +.+|.+.|.+++|+|++ ++|+|++.|++|++||+.+++++.
T Consensus 99 ~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg---------------~~l~sgs~d~~i~iwd~~~~~~~~ 163 (344)
T 4gqb_B 99 ASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG---------------TQAVSGSKDICIKVWDLAQQVVLS 163 (344)
T ss_dssp EETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS---------------SEEEEEETTSCEEEEETTTTEEEE
T ss_pred EECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC---------------CEEEEEeCCCeEEEEECCCCcEEE
Confidence 46899999999999987654 34899999999999974 458999999999999999999888
Q ss_pred EEE-eCCcceeEEEccCCCE-EE-EEcCCeEEEEECCCcceEEeeeccc---eeEEEEEEecC-CCCEEEEecCCCeEEE
Q psy6442 77 KLE-FGAVPNSLEISRDGTT-IT-VTHGSCVTFLDANSLELIKEHKVPA---QVHSASLLLNS-ERPIFVCGGEDLKMYK 149 (231)
Q Consensus 77 ~~~-~~~~~~~v~~~~~~~~-~~-~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~g~~d~~i~~ 149 (231)
.+. +...+.+++|+|++.. ++ .+.++.+++||.++.+....+.... .+.. +.+++ ++.++++|+.|++|++
T Consensus 164 ~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~l~sg~~dg~v~~ 241 (344)
T 4gqb_B 164 SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTS--LAWHPQQSEVFVFGDENGTVSL 241 (344)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEE--EEECSSCTTEEEEEETTSEEEE
T ss_pred EEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeecccee--eeecCCCCcceEEeccCCcEEE
Confidence 775 5678999999999863 33 4568999999999888776654322 2333 33455 5678899999999999
Q ss_pred EeCCCcceeeeccCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCeee
Q psy6442 150 FDYSTGAEIESFKGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVGKTYG 201 (231)
Q Consensus 150 ~d~~~~~~~~~~~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~~~~~ 201 (231)
||+++++.+.++.+|...|++++|+|++ ++|+||+.|++|+|||+.+++.+.
T Consensus 242 wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~ 294 (344)
T 4gqb_B 242 VDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR 294 (344)
T ss_dssp EESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE
Confidence 9999999999999999999999999998 589999999999999999987653
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=9e-31 Score=213.85 Aligned_cols=192 Identities=18% Similarity=0.260 Sum_probs=168.2
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc---------------------------cCCC
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA---------------------------KNNT 53 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~---------------------------~~~~ 53 (231)
++.|++|++|+..+|+.+..+.+|...+++++|+|+++.+++++.+..+ .+++
T Consensus 98 ~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 177 (321)
T 3ow8_A 98 SSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK 177 (321)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSS
T ss_pred EeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCC
Confidence 3679999999999999999999999999999999999999998765322 2678
Q ss_pred EEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeecc-ceeEEEEEE
Q psy6442 54 RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVP-AQVHSASLL 130 (231)
Q Consensus 54 ~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~ 130 (231)
.|++++.|++|++||+.+++.+..+. +...+.+++|+|++..++.+ .++.+++||.........+..+ ..+..+.
T Consensus 178 ~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~-- 255 (321)
T 3ow8_A 178 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA-- 255 (321)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE--
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE--
Confidence 99999999999999999998887775 45678999999999987765 5789999999888777665543 3455444
Q ss_pred ecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442 131 LNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT 194 (231)
Q Consensus 131 ~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~ 194 (231)
++|++..+++++.|++|++||+.+++.+.++.+|..+|.+++|+|++.+|++++.|++|+|||.
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 4899999999999999999999999999999999999999999999999999999999999995
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.98 E-value=7.5e-30 Score=209.65 Aligned_cols=218 Identities=17% Similarity=0.265 Sum_probs=180.0
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc------------------------------c
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA------------------------------K 50 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~------------------------------~ 50 (231)
++.||+|++|+..+++.+.++..|.+.|.+++|+|+++++++++.|..+ .
T Consensus 73 ~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 152 (340)
T 1got_B 73 ASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152 (340)
T ss_dssp EETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEE
T ss_pred EeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEEC
Confidence 4689999999999999999999999999999999999999998765321 1
Q ss_pred CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeecc-ceeEEE
Q psy6442 51 NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVP-AQVHSA 127 (231)
Q Consensus 51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~ 127 (231)
++..+++++.|++|++||+.+++++..+. +...+.+++++|++..++. +.++.+++||..+......+..+ ..+..+
T Consensus 153 ~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v 232 (340)
T 1got_B 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232 (340)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEE
T ss_pred CCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEE
Confidence 34569999999999999999998877765 4568999999999987765 46899999999988877766543 345555
Q ss_pred EEEecCCCCEEEEecCCCeEEEEeCCCcceeeecc--CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK--GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 128 ~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~--~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~ 205 (231)
.+ +|++..+++|+.|++|++||+++++.+..+. .+...|.+++|+|++++|++++.|+.|+|||+.+++....+.+
T Consensus 233 ~~--~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~ 310 (340)
T 1got_B 233 CF--FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310 (340)
T ss_dssp EE--CTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EE--cCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeec
Confidence 44 8899999999999999999999888776654 3445799999999999999999999999999999998887776
Q ss_pred cCCcccCCCCCCcccc
Q psy6442 206 IEGGLNNSLGLDSSGH 221 (231)
Q Consensus 206 ~~~~~~~~~~~~~~~~ 221 (231)
..+. ...+++.++|+
T Consensus 311 h~~~-v~~~~~s~dg~ 325 (340)
T 1got_B 311 HDNR-VSCLGVTDDGM 325 (340)
T ss_dssp CSSC-EEEEEECTTSS
T ss_pred CCCc-EEEEEEcCCCC
Confidence 5443 33455555554
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.97 E-value=5e-30 Score=216.01 Aligned_cols=193 Identities=19% Similarity=0.283 Sum_probs=166.0
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc---------------------------CCC
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------NNT 53 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~~ 53 (231)
++.||+|++|+..+++++.++.+|.+.|.++.|+|+++.+++++.|..+. ++.
T Consensus 168 gs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~ 247 (410)
T 1vyh_C 168 CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247 (410)
T ss_dssp EETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred EeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC
Confidence 46899999999999999999999999999999999999999998764321 567
Q ss_pred EEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccC--------------------CCEEEE-EcCCeEEEEECCC
Q psy6442 54 RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRD--------------------GTTITV-THGSCVTFLDANS 111 (231)
Q Consensus 54 ~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~--------------------~~~~~~-~~~~~i~~~d~~~ 111 (231)
.|++++.|++|++||+.++++...+. +...+.+++|+|+ +..++. +.++.+++||..+
T Consensus 248 ~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~ 327 (410)
T 1vyh_C 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327 (410)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence 89999999999999999988877764 4567899999986 445544 5688999999998
Q ss_pred cceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEE
Q psy6442 112 LELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLR 190 (231)
Q Consensus 112 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~ 190 (231)
...+..+..+ ..+..+. +++++.++++++.|++|++||..+++.+.++.+|...|++++|+|++.+|+||+.|++|+
T Consensus 328 ~~~~~~~~~h~~~v~~v~--~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~ 405 (410)
T 1vyh_C 328 GMCLMTLVGHDNWVRGVL--FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 405 (410)
T ss_dssp TEEEEEEECCSSCEEEEE--ECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEE
T ss_pred CceEEEEECCCCcEEEEE--EcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence 8877776543 3455544 488999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCC
Q psy6442 191 LWQTN 195 (231)
Q Consensus 191 iwd~~ 195 (231)
||+.+
T Consensus 406 vW~~r 410 (410)
T 1vyh_C 406 VWECR 410 (410)
T ss_dssp EEC--
T ss_pred EEeCC
Confidence 99863
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=9.4e-30 Score=209.08 Aligned_cols=176 Identities=21% Similarity=0.339 Sum_probs=154.6
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE- 79 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~- 79 (231)
++.|++|++|+..+++.+.++.+|.+.|.+++|+|++ ..|++++.|++|++||++++.+...+.
T Consensus 160 ~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~---------------~~l~sg~~d~~v~~wd~~~~~~~~~~~~ 224 (340)
T 1got_B 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT---------------RLFVSGACDASAKLWDVREGMCRQTFTG 224 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---------------SEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred EECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC---------------CEEEEEeCCCcEEEEECCCCeeEEEEcC
Confidence 3679999999999999999999999999999999974 458999999999999999998887775
Q ss_pred eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccc---eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc
Q psy6442 80 FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPA---QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG 155 (231)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~ 155 (231)
+...+.+++|+|++..++. +.++.+++||.+....+..+..+. .+.. +.++|++.++++|+.|+.|++||..++
T Consensus 225 h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~--~~~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS--VSFSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE--EEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE--EEECCCCCEEEEECCCCeEEEEEcccC
Confidence 4567999999999998765 467899999998877666554332 3444 445899999999999999999999999
Q ss_pred ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442 156 AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ 193 (231)
Q Consensus 156 ~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd 193 (231)
..+..+.+|.++|.+++|+|++.+|+||+.|++|+|||
T Consensus 303 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999999999999999997
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=9.7e-30 Score=207.35 Aligned_cols=205 Identities=21% Similarity=0.276 Sum_probs=162.4
Q ss_pred CCcCCCceeeeccC-----CCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCce
Q psy6442 1 MCVDGKPMLRQGDT-----GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEV 75 (231)
Q Consensus 1 ~~~d~~~~~~~~~~-----g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~ 75 (231)
++.|++|++|+... +..+.+|++|.+.|.++.|+|++ .+|+|++.|++|++||+.+++++
T Consensus 36 ~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg---------------~~l~s~s~D~~v~~wd~~~~~~~ 100 (319)
T 3frx_A 36 ASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG---------------AYALSASWDKTLRLWDVATGETY 100 (319)
T ss_dssp EETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS---------------SEEEEEETTSEEEEEETTTTEEE
T ss_pred ecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC---------------CEEEEEeCCCEEEEEECCCCCee
Confidence 47899999999753 44578899999999999999974 45899999999999999999888
Q ss_pred EEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccceeEEEEEEec----CCCCEEEEecCCCeEEE
Q psy6442 76 QKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQVHSASLLLN----SERPIFVCGGEDLKMYK 149 (231)
Q Consensus 76 ~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~d~~i~~ 149 (231)
..+. +...+.+++++|++..++. +.++.+++||...............+..+.+.+. +++..+++++.|++|++
T Consensus 101 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~ 180 (319)
T 3frx_A 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180 (319)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEE
T ss_pred EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEE
Confidence 7765 5678999999999987765 5688999999875433222222334444444211 14558999999999999
Q ss_pred EeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442 150 FDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL 222 (231)
Q Consensus 150 ~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (231)
||+.+.+....+.+|..+|.+++|+|++++|++++.|++|+|||+.+++....++... ....++|.+++..
T Consensus 181 wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~sp~~~~ 251 (319)
T 3frx_A 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD--EVFSLAFSPNRYW 251 (319)
T ss_dssp EETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS--CEEEEEECSSSSE
T ss_pred EECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--cEEEEEEcCCCCE
Confidence 9999998889999999999999999999999999999999999999998877776432 3344556555543
No 10
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=203.82 Aligned_cols=195 Identities=18% Similarity=0.253 Sum_probs=157.6
Q ss_pred CcCCCceeeeccCCCeEeeee--cccccEEEEEECCCCceeEecccccccc-----------------------------
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFE--GHKGCVWGVDINKDASKAASGAADFQAK----------------------------- 50 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~--gH~~~V~~~~~~~~~~~~~s~~~d~~~~----------------------------- 50 (231)
|.|++|+||+..+|+++++++ +|.+.|.+++|+|+++++++|+.|..++
T Consensus 42 g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~ 121 (318)
T 4ggc_A 42 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI 121 (318)
T ss_dssp EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTE
T ss_pred EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCE
Confidence 569999999999999988775 6788899999999999999998764322
Q ss_pred ---------------------------------------CCCEEEEEeCCCCEEEEeCCCCCceE----E-EEeCCccee
Q psy6442 51 ---------------------------------------NNTRLISCAEDKTVRLWDVSASAEVQ----K-LEFGAVPNS 86 (231)
Q Consensus 51 ---------------------------------------~~~~l~s~s~D~ti~iwd~~~~~~~~----~-~~~~~~~~~ 86 (231)
++..|++++.|++|++||+++++... . ......+..
T Consensus 122 l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 201 (318)
T 4ggc_A 122 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 201 (318)
T ss_dssp EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEE
T ss_pred EEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEE
Confidence 56789999999999999998765421 1 123456788
Q ss_pred EEEccCCCEEE-E-E--cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEE--EecCCCeEEEEeCCCcceeee
Q psy6442 87 LEISRDGTTIT-V-T--HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFV--CGGEDLKMYKFDYSTGAEIES 160 (231)
Q Consensus 87 v~~~~~~~~~~-~-~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~d~~i~~~d~~~~~~~~~ 160 (231)
++++|++..++ . + .++.+++||...............+....+ .+.+..++ +|+.|+.|++||+.+++++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~ 279 (318)
T 4ggc_A 202 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW--SPHYKELISGHGFAQNQLVIWKYPTMAKVAE 279 (318)
T ss_dssp EEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEE--ETTTTEEEEEECTTTCCEEEEETTTCCEEEE
T ss_pred EEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeee--cccccceEEEEEcCCCEEEEEECCCCcEEEE
Confidence 89998876443 2 2 357899999988877766666656665555 45555544 455899999999999999999
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442 161 FKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198 (231)
Q Consensus 161 ~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~ 198 (231)
+.+|.++|++++|+|++++|+||+.|++|+|||+....
T Consensus 280 l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 280 LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 99999999999999999999999999999999997654
No 11
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=1.8e-29 Score=210.50 Aligned_cols=196 Identities=21% Similarity=0.313 Sum_probs=151.2
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc-------------------------------
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA------------------------------- 49 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~------------------------------- 49 (231)
++.||+|++|+..+++.+.++++|...|.+++|+|+++.+++++.|..+
T Consensus 84 ~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~ 163 (380)
T 3iz6_a 84 ASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSC 163 (380)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCC
T ss_pred EeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEE
Confidence 4789999999999999999999999999999999999988887654211
Q ss_pred ----cCCCEEEEEeCCCCEEEEeCCCC-------------------------------------------------CceE
Q psy6442 50 ----KNNTRLISCAEDKTVRLWDVSAS-------------------------------------------------AEVQ 76 (231)
Q Consensus 50 ----~~~~~l~s~s~D~ti~iwd~~~~-------------------------------------------------~~~~ 76 (231)
..+..|+|++.|++|++||+.++ +.+.
T Consensus 164 ~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~ 243 (380)
T 3iz6_a 164 QYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR 243 (380)
T ss_dssp BCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCE
T ss_pred EEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceE
Confidence 01233555555555555554332 2223
Q ss_pred EEE-eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccc--------eeEEEEEEecCCCCEEEEecCCCe
Q psy6442 77 KLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPA--------QVHSASLLLNSERPIFVCGGEDLK 146 (231)
Q Consensus 77 ~~~-~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~d~~ 146 (231)
.+. +...+.+++|+|++..++.+ .++.+++||.++...+..+.... .+.. +.++|++.++++|+.|+.
T Consensus 244 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~s~~g~~l~~g~~dg~ 321 (380)
T 3iz6_a 244 TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTS--VAFSISGRLLFAGYSNGD 321 (380)
T ss_dssp EECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSE--EEECSSSSEEEEECTTSC
T ss_pred EECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEE--EEECCCCCEEEEEECCCC
Confidence 322 34568899999999987664 57899999999887776554321 1333 445899999999999999
Q ss_pred EEEEeCCCcceeeec----cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442 147 MYKFDYSTGAEIESF----KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198 (231)
Q Consensus 147 i~~~d~~~~~~~~~~----~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~ 198 (231)
|++||...++.+..+ .+|.+.|++++|+|++.+|+||+.|++|+||++...+
T Consensus 322 i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 322 CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 999999888877665 6899999999999999999999999999999998764
No 12
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=4e-29 Score=206.65 Aligned_cols=180 Identities=22% Similarity=0.365 Sum_probs=154.6
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE- 79 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~- 79 (231)
++.|++|++|+..+++++.++.+|...|.+++|+|+. ++..|++++.|++|++||+++++++..+.
T Consensus 172 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~ 238 (354)
T 2pbi_B 172 ASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE-------------TGNTFVSGGCDKKAMVWDMRSGQCVQAFET 238 (354)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS-------------SCCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred EeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC-------------CCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence 3679999999999999999999999999999998852 25679999999999999999999887775
Q ss_pred eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce
Q psy6442 80 FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE 157 (231)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~ 157 (231)
+...+.+++|+|++..++. +.++.+++||.+....+..+.... .....++.+++++.++++|+.|++|++||+.+++.
T Consensus 239 h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~ 318 (354)
T 2pbi_B 239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR 318 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE
T ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce
Confidence 4568999999999987765 468899999998876655543321 11223344589999999999999999999999999
Q ss_pred eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442 158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ 193 (231)
Q Consensus 158 ~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd 193 (231)
+..+.+|..+|++++|+|++++|+|++.|++|+||+
T Consensus 319 ~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 319 VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999999999999996
No 13
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=1.2e-28 Score=203.81 Aligned_cols=219 Identities=19% Similarity=0.264 Sum_probs=178.7
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc-------------------------------
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA------------------------------- 49 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~------------------------------- 49 (231)
++.||+|++|+..+++....+..|...|.++.|+|++..+++++.|..+
T Consensus 82 ~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 161 (354)
T 2pbi_B 82 SSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACS 161 (354)
T ss_dssp EETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEE
T ss_pred EeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEE
Confidence 4789999999999999999999999999999999999999998765321
Q ss_pred --cCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccC--CCEEEE-EcCCeEEEEECCCcceEEeeecc-c
Q psy6442 50 --KNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRD--GTTITV-THGSCVTFLDANSLELIKEHKVP-A 122 (231)
Q Consensus 50 --~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~--~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~-~ 122 (231)
.++..|+|++.|++|++||+.+++++..+. +...+.+++++|+ +..++. +.++.+++||.++.+.+..+..+ .
T Consensus 162 ~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~ 241 (354)
T 2pbi_B 162 FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES 241 (354)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred EeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Confidence 145689999999999999999999888776 4567888888874 555554 56899999999988877766543 3
Q ss_pred eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccC--CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442 123 QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG--HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY 200 (231)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~--h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~ 200 (231)
.+..+.+ +|++..+++++.|++|++||++.+..+..+.. +...+.+++|+|++++|++++.|++|+|||+.+++..
T Consensus 242 ~v~~v~~--~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~ 319 (354)
T 2pbi_B 242 DVNSVRY--YPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV 319 (354)
T ss_dssp CEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE
T ss_pred CeEEEEE--eCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceE
Confidence 5555544 88999999999999999999988877666543 3457899999999999999999999999999999988
Q ss_pred eeeeccCCcccCCCCCCccccc
Q psy6442 201 GLWKCIEGGLNNSLGLDSSGHL 222 (231)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~ 222 (231)
..+....+. ...+++.++|..
T Consensus 320 ~~l~~h~~~-v~~l~~spdg~~ 340 (354)
T 2pbi_B 320 SILFGHENR-VSTLRVSPDGTA 340 (354)
T ss_dssp EEECCCSSC-EEEEEECTTSSC
T ss_pred EEEECCCCc-EEEEEECCCCCE
Confidence 777654432 344566666654
No 14
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=2.9e-29 Score=206.97 Aligned_cols=181 Identities=17% Similarity=0.207 Sum_probs=148.5
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF 80 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~ 80 (231)
++.||+|++|+..+++.+.+|.+|++.|.++.|++++ ...|+|++.|++|++||++++++...+..
T Consensus 145 gs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~--------------~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 210 (344)
T 4gqb_B 145 GSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK--------------DSVFLSCSEDNRILLWDTRCPKPASQIGC 210 (344)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC--------------TTEEEEEETTSCEEEEETTSSSCEEECC-
T ss_pred EeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC--------------CCceeeeccccccccccccccceeeeeec
Confidence 4689999999999999999999999999999999975 24589999999999999999988776642
Q ss_pred ---CCcceeEEEccCCC-EEEE-EcCCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCC-CEEEEecCCCeEEEEeCC
Q psy6442 81 ---GAVPNSLEISRDGT-TITV-THGSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSER-PIFVCGGEDLKMYKFDYS 153 (231)
Q Consensus 81 ---~~~~~~v~~~~~~~-~~~~-~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~g~~d~~i~~~d~~ 153 (231)
...+.+++++|++. .++. +.++.|++||.++.+.+..+..+ ..+..+.+ +|++ .++++|+.|++|++||..
T Consensus 211 ~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f--sp~g~~~lasgs~D~~i~vwd~~ 288 (344)
T 4gqb_B 211 SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF--SPHSVPFLASLSEDCSLAVLDSS 288 (344)
T ss_dssp ---CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEE--CSSSSCCEEEEETTSCEEEECTT
T ss_pred ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEE--ccCCCeEEEEEeCCCeEEEEECC
Confidence 34578999999654 4444 46789999999988887776654 35555554 7776 578999999999999998
Q ss_pred CcceeeeccCCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCCCC
Q psy6442 154 TGAEIESFKGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTNVGK 198 (231)
Q Consensus 154 ~~~~~~~~~~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~~~~ 198 (231)
+++.+ .+.+|.+.|++++|+|++. +|+|++.|++|++|++.+..
T Consensus 289 ~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 289 LSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 87754 5789999999999999985 68899999999999997754
No 15
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=4.1e-29 Score=210.73 Aligned_cols=199 Identities=19% Similarity=0.265 Sum_probs=155.8
Q ss_pred CcCCCceeeeccCCCeEeeee--cccccEEEEEECCCCceeEecccccccc-----------------------------
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFE--GHKGCVWGVDINKDASKAASGAADFQAK----------------------------- 50 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~--gH~~~V~~~~~~~~~~~~~s~~~d~~~~----------------------------- 50 (231)
|.|++|+||+..+|+.++.+. +|.+.|.+++|+|+|+++++|+.|..+.
T Consensus 122 gld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~ 201 (420)
T 4gga_A 122 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI 201 (420)
T ss_dssp EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTE
T ss_pred EeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCE
Confidence 569999999999999887765 6788999999999999999998764332
Q ss_pred ---------------------------------------CCCEEEEEeCCCCEEEEeCCCCCc----eEEE-EeCCccee
Q psy6442 51 ---------------------------------------NNTRLISCAEDKTVRLWDVSASAE----VQKL-EFGAVPNS 86 (231)
Q Consensus 51 ---------------------------------------~~~~l~s~s~D~ti~iwd~~~~~~----~~~~-~~~~~~~~ 86 (231)
++..+++++.|+.+++||...++. +... .+...+..
T Consensus 202 l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~ 281 (420)
T 4gga_A 202 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281 (420)
T ss_dssp EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEE
T ss_pred EEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceee
Confidence 445666777777777777665432 1111 23456788
Q ss_pred EEEccCCCEEE-EE---cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEe--cCCCeEEEEeCCCcceeee
Q psy6442 87 LEISRDGTTIT-VT---HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCG--GEDLKMYKFDYSTGAEIES 160 (231)
Q Consensus 87 v~~~~~~~~~~-~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~d~~i~~~d~~~~~~~~~ 160 (231)
++|+|.+..++ +. .+++|++||..+............+....+ .+++..++++ ..|+.|++||..+++.+.+
T Consensus 282 ~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~--~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~ 359 (420)
T 4gga_A 282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW--SPHYKELISGHGFAQNQLVIWKYPTMAKVAE 359 (420)
T ss_dssp EEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEE--ETTTTEEEEEECTTTCCEEEEETTTCCEEEE
T ss_pred eeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeee--cCCCCeEEEEEecCCCEEEEEECCCCcEEEE
Confidence 99999876443 32 468999999999988888777666665554 5666666554 4789999999999999999
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442 161 FKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL 202 (231)
Q Consensus 161 ~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~ 202 (231)
+.+|.++|++++|+|||++|+||+.|++|+|||+....+...
T Consensus 360 l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 360 LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR 401 (420)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccch
Confidence 999999999999999999999999999999999987665443
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=7.6e-29 Score=202.05 Aligned_cols=194 Identities=23% Similarity=0.309 Sum_probs=161.8
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc------------------------------
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK------------------------------ 50 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~------------------------------ 50 (231)
++.|++|++|+..+|+.+.++.+|.+.|.+++|+|++..+++++.|..++
T Consensus 83 ~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 83 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC---
T ss_pred EeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCC
Confidence 46899999999999999999999999999999999999999998875332
Q ss_pred --CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccceeEE
Q psy6442 51 --NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQVHS 126 (231)
Q Consensus 51 --~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 126 (231)
++..|++++.|++|++||+...+....+. +...+.+++++|++..++. +.++.+++||....+.+..+..+.++..
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~ 242 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS 242 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEE
T ss_pred CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEE
Confidence 23479999999999999999887766553 5678999999999998765 4688999999999888877776666665
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEeCCCcceeeecc--------CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442 127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK--------GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG 197 (231)
Q Consensus 127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~--------~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~ 197 (231)
+.+ +|++..++++.. ..+++|++.....+..+. .|...+.+++|+|||++|++++.|++|+|||+.++
T Consensus 243 ~~~--sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 243 LAF--SPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEE--CSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEE--cCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 554 889998888765 458999987766555442 35678999999999999999999999999998764
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=1.8e-28 Score=199.67 Aligned_cols=195 Identities=19% Similarity=0.294 Sum_probs=153.3
Q ss_pred CCcCCCceeeeccCCC-----eEeeeecccccEEEEEECCCCceeEecccccccc-------------------------
Q psy6442 1 MCVDGKPMLRQGDTGD-----WIGTFEGHKGCVWGVDINKDASKAASGAADFQAK------------------------- 50 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~-----~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~------------------------- 50 (231)
+|.||+|++|+..+++ .+.++++|.+.|.++.|+|+++++++++.|..+.
T Consensus 57 ~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (340)
T 4aow_A 57 ASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 136 (340)
T ss_dssp EETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred EcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEE
Confidence 4789999999986553 5778999999999999999999999987763321
Q ss_pred -----------------------------------------------CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCC
Q psy6442 51 -----------------------------------------------NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGA 82 (231)
Q Consensus 51 -----------------------------------------------~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~ 82 (231)
....+++++.|++|++||+..++....+. +..
T Consensus 137 ~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~ 216 (340)
T 4aow_A 137 SSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 216 (340)
T ss_dssp CTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred eecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC
Confidence 22346677777777777777666655543 356
Q ss_pred cceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeec
Q psy6442 83 VPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESF 161 (231)
Q Consensus 83 ~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~ 161 (231)
.+.+++++|++..++. +.++.+++||..+.+.+..+.....+..+.+ +|++. +++++.|+.|++||++.+..+..+
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~--~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~ 293 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCF--SPNRY-WLCAATGPSIKIWDLEGKIIVDEL 293 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEE--CSSSS-EEEEEETTEEEEEETTTTEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeec--CCCCc-eeeccCCCEEEEEECCCCeEEEec
Confidence 7899999999998765 4678999999999888887776666665554 66665 455667999999999877655443
Q ss_pred ---------cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442 162 ---------KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198 (231)
Q Consensus 162 ---------~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~ 198 (231)
.+|...|++++|+|++++|+||+.||+|+|||+++|+
T Consensus 294 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 294 KQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred cccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 4689999999999999999999999999999999885
No 18
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.97 E-value=2.6e-29 Score=208.05 Aligned_cols=194 Identities=18% Similarity=0.271 Sum_probs=150.0
Q ss_pred CCcCCCceeeeccCCCeEee----eecccccEEEEEECCCCceeEecccccccc--------------------------
Q psy6442 1 MCVDGKPMLRQGDTGDWIGT----FEGHKGCVWGVDINKDASKAASGAADFQAK-------------------------- 50 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~----l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-------------------------- 50 (231)
++.||+|+||+..+++.+.. +.+|.+.|.+++|+|+++.+++++.|..++
T Consensus 111 ~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s 190 (357)
T 4g56_B 111 ASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC 190 (357)
T ss_dssp EETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred EECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 36799999999988876543 348999999999999999999998764332
Q ss_pred -C-CCEEEEEeCCCCEEEEeCCCCCceEEEEe---CCcceeEEEccCCC-EEEE-EcCCeEEEEECCCcceEEeeecc-c
Q psy6442 51 -N-NTRLISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGT-TITV-THGSCVTFLDANSLELIKEHKVP-A 122 (231)
Q Consensus 51 -~-~~~l~s~s~D~ti~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~-~~~~-~~~~~i~~~d~~~~~~~~~~~~~-~ 122 (231)
+ ...+++++.|++|++||++++++...+.. ...+.+++|+|++. .+++ +.++.|++||..+.+.+..+... .
T Consensus 191 ~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~ 270 (357)
T 4g56_B 191 PGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ 270 (357)
T ss_dssp TTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSS
T ss_pred cCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccce
Confidence 2 35799999999999999998887665543 34688999999865 4544 45789999999988877766543 3
Q ss_pred eeEEEEEEecCCC-CEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcC-CCCEEEEeeCCCcEEEEeCCCC
Q psy6442 123 QVHSASLLLNSER-PIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP-DGELYASGSEDGTLRLWQTNVG 197 (231)
Q Consensus 123 ~~~~~~~~~~~~~-~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~sp-d~~~laS~s~d~~v~iwd~~~~ 197 (231)
.+..+.+ +|++ .++++|+.|++|++||+.+++.+..+ +|.++|++|+|+| ++.+|+|++.|++|++|++.+.
T Consensus 271 ~v~~l~~--sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 271 NITGLAY--SYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp CEEEEEE--CSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred eEEEEEE--cCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 5555554 6665 57899999999999999998877655 7999999999999 7899999999999999998654
No 19
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=2.9e-28 Score=197.24 Aligned_cols=218 Identities=21% Similarity=0.285 Sum_probs=176.0
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc---------------------------CCC
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------NNT 53 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~~ 53 (231)
++.||++++|+..+++.+..+.+|...|.+++|+|+++.+++++.|..+. ++.
T Consensus 41 ~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 120 (312)
T 4ery_A 41 SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120 (312)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred eeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence 36799999999999999999999999999999999999999997764321 567
Q ss_pred EEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccc--eeEEEEE
Q psy6442 54 RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPA--QVHSASL 129 (231)
Q Consensus 54 ~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~ 129 (231)
.|++++.|++|++||+++++++..+. +...+.+++++|++..+++ +.++.+++||..+.+.+....... ++.. +
T Consensus 121 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~--~ 198 (312)
T 4ery_A 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF--V 198 (312)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEE--E
T ss_pred EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEE--E
Confidence 89999999999999999998877775 3567899999999987765 467899999999887766553322 3333 4
Q ss_pred EecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeE--EEEc-CCCCEEEEeeCCCcEEEEeCCCCCeeeeeecc
Q psy6442 130 LLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHC--VKFS-PDGELYASGSEDGTLRLWQTNVGKTYGLWKCI 206 (231)
Q Consensus 130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~--v~~s-pd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~ 206 (231)
.++|++..+++++.|+.|++||+.+++.+..+.+|...+.. ..++ +++.+|++++.|+.|++||+.+++....++..
T Consensus 199 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h 278 (312)
T 4ery_A 199 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278 (312)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc
Confidence 45899999999999999999999999999999888765433 3344 67889999999999999999999988777754
Q ss_pred CCcccCCCCCCcccc
Q psy6442 207 EGGLNNSLGLDSSGH 221 (231)
Q Consensus 207 ~~~~~~~~~~~~~~~ 221 (231)
.+. ...+++.+++.
T Consensus 279 ~~~-v~~~~~~p~~~ 292 (312)
T 4ery_A 279 TDV-VISTACHPTEN 292 (312)
T ss_dssp SSC-EEEEEECSSSS
T ss_pred CCc-EEEEeecCcCC
Confidence 332 33344444443
No 20
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=4.4e-28 Score=202.89 Aligned_cols=191 Identities=18% Similarity=0.280 Sum_probs=160.6
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF 80 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~ 80 (231)
++.|++|++|+..+++.+..+.+|.+.|.+++|+|++ ..|++++.|++|++||++++++...+..
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~---------------~~l~s~s~d~~v~iwd~~~~~~~~~~~~ 205 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG---------------DKLVSGSGDRTVRIWDLRTGQCSLTLSI 205 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---------------SEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC---------------CEEEEecCCCcEEEEECCCCeeEEEEEc
Confidence 4679999999999999999999999999999999974 4589999999999999999998888888
Q ss_pred CCcceeEEEcc-CCCEEEE-EcCCeEEEEECCCcceEEeeec--------cceeEEEEEEecCCCCEEEEecCCCeEEEE
Q psy6442 81 GAVPNSLEISR-DGTTITV-THGSCVTFLDANSLELIKEHKV--------PAQVHSASLLLNSERPIFVCGGEDLKMYKF 150 (231)
Q Consensus 81 ~~~~~~v~~~~-~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~ 150 (231)
...+..++++| ++..+++ +.++.+++||..+...+..... ...+.. +.+++++..+++++.|++|++|
T Consensus 206 ~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~--v~~~~~g~~l~s~s~d~~v~~w 283 (393)
T 1erj_A 206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS--VVFTRDGQSVVSGSLDRSVKLW 283 (393)
T ss_dssp SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE--EEECTTSSEEEEEETTSEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE--EEECCCCCEEEEEeCCCEEEEE
Confidence 88899999999 7777665 4688999999988776655421 123444 4458999999999999999999
Q ss_pred eCCCc------------ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCC
Q psy6442 151 DYSTG------------AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEG 208 (231)
Q Consensus 151 d~~~~------------~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~ 208 (231)
|+.+. .....+.+|...|.+++|+|++.+|++++.|++|+|||..+++....++...+
T Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~ 353 (393)
T 1erj_A 284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN 353 (393)
T ss_dssp EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred ECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC
Confidence 98653 33556789999999999999999999999999999999999998877775543
No 21
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=3.7e-28 Score=199.72 Aligned_cols=178 Identities=20% Similarity=0.239 Sum_probs=144.6
Q ss_pred CCcCCCceeeeccC-------CCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC
Q psy6442 1 MCVDGKPMLRQGDT-------GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA 73 (231)
Q Consensus 1 ~~~d~~~~~~~~~~-------g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~ 73 (231)
++.|++|++|+..+ +..+.++.+|.+.|.++.|+|++ ..|+|++.|++|++||+++++
T Consensus 45 gs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~---------------~~l~s~s~D~~v~lwd~~~~~ 109 (343)
T 2xzm_R 45 GSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN---------------CFAISSSWDKTLRLWDLRTGT 109 (343)
T ss_dssp EETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST---------------TEEEEEETTSEEEEEETTSSC
T ss_pred EcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC---------------CEEEEEcCCCcEEEEECCCCc
Confidence 46899999999864 34677899999999999999974 458999999999999999998
Q ss_pred ceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEee---eccceeEEEEEEecCCC----------CEE
Q psy6442 74 EVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEH---KVPAQVHSASLLLNSER----------PIF 138 (231)
Q Consensus 74 ~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------~~~ 138 (231)
++..+. +...+.+++|+|++..++. +.++.+++||.......... .....+..+.+ +|.+ ..+
T Consensus 110 ~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~l 187 (343)
T 2xzm_R 110 TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRY--SPIMKSANKVQPFAPYF 187 (343)
T ss_dssp EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEE--CCCCCSCSCCCSSCCEE
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeee--ccccccccccCCCCCEE
Confidence 887775 5678999999999997765 56899999998743322221 11223444444 5544 689
Q ss_pred EEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442 139 VCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV 196 (231)
Q Consensus 139 ~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~ 196 (231)
++++.|++|++||. .......+.+|..+|.+++|+|++++|++++.|++|+|||+..
T Consensus 188 ~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 188 ASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp EEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred EEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 99999999999994 5566778899999999999999999999999999999999943
No 22
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=2.2e-28 Score=197.36 Aligned_cols=183 Identities=25% Similarity=0.330 Sum_probs=143.6
Q ss_pred CCcCCCceeeeccC--CCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC--ceE
Q psy6442 1 MCVDGKPMLRQGDT--GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA--EVQ 76 (231)
Q Consensus 1 ~~~d~~~~~~~~~~--g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~--~~~ 76 (231)
++.|++|++|+..+ ++++.+|.+|.+.|++++|+++ .++..|+|++.|++|++||+.+++ .+.
T Consensus 27 ~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~-------------~~g~~l~s~s~D~~v~iWd~~~~~~~~~~ 93 (297)
T 2pm7_B 27 CSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP-------------KFGTILASCSYDGKVMIWKEENGRWSQIA 93 (297)
T ss_dssp EETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCG-------------GGCSEEEEEETTTEEEEEEBSSSCBCCCE
T ss_pred EeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCC-------------CcCCEEEEEcCCCEEEEEEcCCCceEEEE
Confidence 46899999999864 4789999999999999999863 124579999999999999998774 333
Q ss_pred EEE-eCCcceeEEEccC--CCEEEE-EcCCeEEEEECCCcceE--Eeee-ccceeEEEEEEecCC-------------CC
Q psy6442 77 KLE-FGAVPNSLEISRD--GTTITV-THGSCVTFLDANSLELI--KEHK-VPAQVHSASLLLNSE-------------RP 136 (231)
Q Consensus 77 ~~~-~~~~~~~v~~~~~--~~~~~~-~~~~~i~~~d~~~~~~~--~~~~-~~~~~~~~~~~~~~~-------------~~ 136 (231)
.+. +...+.+++|+|+ +..+++ +.++.+++||....... .... ....+..+.+ +|+ +.
T Consensus 94 ~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~--~p~~~~~~~~~~~~~~~~ 171 (297)
T 2pm7_B 94 VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW--APATIEEDGEHNGTKESR 171 (297)
T ss_dssp EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEE--CCCC------------CC
T ss_pred EeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEee--cCCcccccccCCCCCCcc
Confidence 333 4567999999997 666554 56899999998765321 2222 2234555554 443 56
Q ss_pred EEEEecCCCeEEEEeCCCcc----eeeeccCCCCCeeEEEEcCCC---CEEEEeeCCCcEEEEeCCCCC
Q psy6442 137 IFVCGGEDLKMYKFDYSTGA----EIESFKGHFGPIHCVKFSPDG---ELYASGSEDGTLRLWQTNVGK 198 (231)
Q Consensus 137 ~~~~g~~d~~i~~~d~~~~~----~~~~~~~h~~~V~~v~~spd~---~~laS~s~d~~v~iwd~~~~~ 198 (231)
.+++|+.|++|++||+.++. ....+.+|...|.+++|+|++ .+|||++.|++|+|||+..++
T Consensus 172 ~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~ 240 (297)
T 2pm7_B 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ 240 (297)
T ss_dssp EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred eEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence 89999999999999997765 567889999999999999995 799999999999999987753
No 23
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.96 E-value=3.8e-28 Score=199.63 Aligned_cols=193 Identities=18% Similarity=0.233 Sum_probs=151.8
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-----------------------------C
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-----------------------------N 51 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-----------------------------~ 51 (231)
++.|++|++|+..+++.+.++.+|.+.|.+++|+|+++.+++++.|..++ +
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 173 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPI 173 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCC
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccc
Confidence 46799999999999999999999999999999999999999987764321 1
Q ss_pred ----------CCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCC-cceEEee
Q psy6442 52 ----------NTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANS-LELIKEH 118 (231)
Q Consensus 52 ----------~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~-~~~~~~~ 118 (231)
+..|++++.|++|++||.. ......+. +...+.+++|+|+++.++. +.++.+++||... .......
T Consensus 174 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~ 252 (343)
T 2xzm_R 174 MKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF 252 (343)
T ss_dssp CCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE
T ss_pred cccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee
Confidence 1579999999999999953 34444443 5678999999999998765 4688999999843 3333333
Q ss_pred eccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceee--ecc-----------CCCCCeeEEEEcCCCCEEEEeeC
Q psy6442 119 KVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE--SFK-----------GHFGPIHCVKFSPDGELYASGSE 185 (231)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~--~~~-----------~h~~~V~~v~~spd~~~laS~s~ 185 (231)
.....+..+.+ +|++.++++ +.|+.+++||+.+++... .+. +|...|.+++|+|++++|++|+.
T Consensus 253 ~~~~~v~~v~~--sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~ 329 (343)
T 2xzm_R 253 DAGSTINQIAF--NPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFT 329 (343)
T ss_dssp ECSSCEEEEEE--CSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEET
T ss_pred cCCCcEEEEEE--CCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecC
Confidence 33444555444 888887765 467889999997765433 333 78899999999999999999999
Q ss_pred CCcEEEEeCCCC
Q psy6442 186 DGTLRLWQTNVG 197 (231)
Q Consensus 186 d~~v~iwd~~~~ 197 (231)
||+|++|++.++
T Consensus 330 Dg~v~~w~~~~g 341 (343)
T 2xzm_R 330 DGVIRTFSFETS 341 (343)
T ss_dssp TSEEEEEEEEEE
T ss_pred CceEEEEEEEcc
Confidence 999999998665
No 24
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.96 E-value=3e-28 Score=214.88 Aligned_cols=185 Identities=18% Similarity=0.228 Sum_probs=156.5
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE--
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL-- 78 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~-- 78 (231)
++.|++|++|+..+++++.+|.+|.+.|++++|+|++ +.|+|++.|++|++||+.++++...+
T Consensus 166 ~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg---------------~~las~s~D~~i~lwd~~~g~~~~~~~~ 230 (611)
T 1nr0_A 166 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG---------------SLFASTGGDGTIVLYNGVDGTKTGVFED 230 (611)
T ss_dssp EETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS---------------SEEEEEETTSCEEEEETTTCCEEEECBC
T ss_pred EeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC---------------CEEEEEECCCcEEEEECCCCcEeeeecc
Confidence 4689999999999999999999999999999999985 45899999999999999998887766
Q ss_pred ------EeCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccc--eeEEEEEEecCCCCEEEEecCCCeEEE
Q psy6442 79 ------EFGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPA--QVHSASLLLNSERPIFVCGGEDLKMYK 149 (231)
Q Consensus 79 ------~~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~d~~i~~ 149 (231)
.+...+.+++|+|++..++. +.++.+++||..+.+.+..+.... ......+.+ ++..+++++.|+.+++
T Consensus 231 ~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~ 308 (611)
T 1nr0_A 231 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINF 308 (611)
T ss_dssp TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEE
T ss_pred ccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEE
Confidence 25578999999999997765 568899999999888776655321 111122222 5667899999999999
Q ss_pred EeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442 150 FDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL 202 (231)
Q Consensus 150 ~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~ 202 (231)
||...+.....+.+|..+|++++|+|++++|+|++.|++|++||+.+++....
T Consensus 309 ~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 309 VNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 361 (611)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred EeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence 99998888888899999999999999999999999999999999998876543
No 25
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.96 E-value=2.3e-27 Score=192.00 Aligned_cols=195 Identities=18% Similarity=0.303 Sum_probs=163.6
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc---------------------------CCC
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------NNT 53 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~~ 53 (231)
++.||+|++|+..+++.+.++++|.+.|.++.|+|+++.+++++.|..+. ++.
T Consensus 83 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (312)
T 4ery_A 83 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 162 (312)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred ECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC
Confidence 36799999999999999999999999999999999999999997764321 677
Q ss_pred EEEEEeCCCCEEEEeCCCCCceEEEEe--CCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccce-eEE-EE
Q psy6442 54 RLISCAEDKTVRLWDVSASAEVQKLEF--GAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQ-VHS-AS 128 (231)
Q Consensus 54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~-~~~-~~ 128 (231)
.|++++.|++|++||+++++.+..+.. ...+..++++|++..++++ .++.+++||..+.+.+..+..+.. ... ..
T Consensus 163 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 242 (312)
T 4ery_A 163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242 (312)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCE
T ss_pred EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEE
Confidence 899999999999999999888776643 3467889999999987664 578999999998887766543321 111 11
Q ss_pred EEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEee--CCCcEEEEeCC
Q psy6442 129 LLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGS--EDGTLRLWQTN 195 (231)
Q Consensus 129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s--~d~~v~iwd~~ 195 (231)
....+++.++++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++ .|++|++|+..
T Consensus 243 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 12246788999999999999999999999999999999999999999999999997 69999999864
No 26
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.96 E-value=5.9e-27 Score=189.54 Aligned_cols=193 Identities=19% Similarity=0.257 Sum_probs=160.0
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-----------------------------C
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-----------------------------N 51 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-----------------------------~ 51 (231)
++.|++|++|+..+|+.+.++++|.+.|.+++|+|+++++++++.|..++ +
T Consensus 73 ~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~ 152 (304)
T 2ynn_A 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152 (304)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTC
T ss_pred ECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCC
Confidence 46899999999999999999999999999999999999999998764321 4
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCceEEEEe--CCcceeEEEcc--CCCEEEE-EcCCeEEEEECCCcceEEeeeccc-eeE
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAEVQKLEF--GAVPNSLEISR--DGTTITV-THGSCVTFLDANSLELIKEHKVPA-QVH 125 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~--~~~~~~v~~~~--~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~-~~~ 125 (231)
+..|+|++.|++|++||++.+.....+.. ...+..+.+.| ++..++. +.++.|++||..+.+.+..+..+. .+.
T Consensus 153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~ 232 (304)
T 2ynn_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVS 232 (304)
T ss_dssp TTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEE
Confidence 57899999999999999988877666543 34677888876 5555554 568999999999988887776543 454
Q ss_pred EEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC--EEEEeeCCCcEEEEeCCC
Q psy6442 126 SASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE--LYASGSEDGTLRLWQTNV 196 (231)
Q Consensus 126 ~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~--~laS~s~d~~v~iwd~~~ 196 (231)
.+. ++|++..+++|+.|++|++||..+++.+.++..|...+.+++|+|++. ++++++.|+ +.+|++..
T Consensus 233 ~~~--~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 233 FAV--FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp EEE--ECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred EEE--ECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 444 488999999999999999999999999999999999999999999875 578777655 88888765
No 27
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2e-27 Score=193.33 Aligned_cols=187 Identities=10% Similarity=0.040 Sum_probs=143.1
Q ss_pred CceeeeccCCCeEee-eecccccEEEEEECCCCceeEecc--------ccccc--cCCCEEEEEeCCCCEEEEeCCCCCc
Q psy6442 6 KPMLRQGDTGDWIGT-FEGHKGCVWGVDINKDASKAASGA--------ADFQA--KNNTRLISCAEDKTVRLWDVSASAE 74 (231)
Q Consensus 6 ~~~~~~~~~g~~i~~-l~gH~~~V~~~~~~~~~~~~~s~~--------~d~~~--~~~~~l~s~s~D~ti~iwd~~~~~~ 74 (231)
+.++|+..+|+++.+ +.+|.+.|..++++|+|+.+.+.. ..+.. .++..|+|+|.|++|||||+.++++
T Consensus 136 ~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~ 215 (356)
T 2w18_A 136 IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL 215 (356)
T ss_dssp EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE
T ss_pred eEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE
Confidence 467888888998888 688999999999999988766411 11222 3568999999999999999999999
Q ss_pred eEEEEeC----CcceeEEEccCCCEEEE-------------EcCCeEEEEECCCcceEEeeec--c--ceeEEEEEEecC
Q psy6442 75 VQKLEFG----AVPNSLEISRDGTTITV-------------THGSCVTFLDANSLELIKEHKV--P--AQVHSASLLLNS 133 (231)
Q Consensus 75 ~~~~~~~----~~~~~v~~~~~~~~~~~-------------~~~~~i~~~d~~~~~~~~~~~~--~--~~~~~~~~~~~~ 133 (231)
+.++.-. ..+.+++|+|++..+++ +.+.++++||..+.+.+..... + ........ +.
T Consensus 216 l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg--~~ 293 (356)
T 2w18_A 216 LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG--DV 293 (356)
T ss_dssp EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE--EE
T ss_pred EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc--cc
Confidence 9988632 34667799999987643 2457899999988876654321 1 11111111 22
Q ss_pred CCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCee-EEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442 134 ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIH-CVKFSPDGELYASGSEDGTLRLWQT 194 (231)
Q Consensus 134 ~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~-~v~~spd~~~laS~s~d~~v~iwd~ 194 (231)
.+.++++++.|++|++||+.+++.++++++|...+. +++|||||++|+||+.|++|||||+
T Consensus 294 sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 294 KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 366789999999999999999999999999987665 5899999999999999999999995
No 28
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.96 E-value=3.5e-27 Score=205.45 Aligned_cols=186 Identities=25% Similarity=0.440 Sum_probs=157.1
Q ss_pred CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc--------------------------cCCCEE
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA--------------------------KNNTRL 55 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~--------------------------~~~~~l 55 (231)
+.||++++|+ .+++++.++.+|.+.|.+++|+|+++.+++++.|..+ .+++.|
T Consensus 363 ~~dg~v~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 441 (577)
T 2ymu_A 363 SDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTI 441 (577)
T ss_dssp ETTSEEEEEE-TTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred eCCCEEEEEc-CCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEE
Confidence 5789999999 5689999999999999999999999999998776432 167899
Q ss_pred EEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeecc-ceeEEEEEEec
Q psy6442 56 ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVP-AQVHSASLLLN 132 (231)
Q Consensus 56 ~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~ 132 (231)
++++.|++|++||.. ++.+..+. +...+.+++|+|+++.++.+ .++.|++|+. +.+.++.+..+ ..+..+.+ +
T Consensus 442 ~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~--s 517 (577)
T 2ymu_A 442 ASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAF--S 517 (577)
T ss_dssp EEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEE--C
T ss_pred EEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEE--c
Confidence 999999999999975 44454444 56788999999999987764 6789999996 44555555443 35655554 8
Q ss_pred CCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442 133 SERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ 193 (231)
Q Consensus 133 ~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd 193 (231)
|+++++++++.|+.|++||. +++.+.++.+|.++|++++|+||+++|+|++.|++|++||
T Consensus 518 ~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 518 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999999995 6788999999999999999999999999999999999997
No 29
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.96 E-value=7.5e-27 Score=203.35 Aligned_cols=213 Identities=23% Similarity=0.421 Sum_probs=169.7
Q ss_pred CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc--------------------------cCCCEE
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA--------------------------KNNTRL 55 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~--------------------------~~~~~l 55 (231)
+.||++++|+.. ++.+..+.+|...|.+++|+|+++.++++..+..+ .+++.|
T Consensus 322 ~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 400 (577)
T 2ymu_A 322 SDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI 400 (577)
T ss_dssp ETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred eCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEE
Confidence 579999999954 67778899999999999999999999998765322 167889
Q ss_pred EEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeec-cceeEEEEEEec
Q psy6442 56 ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKV-PAQVHSASLLLN 132 (231)
Q Consensus 56 ~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~ 132 (231)
++++.|++|++||.. ++.+..+. +...+.+++++|+++.++. +.++.+++||... +.+..... ...+..+. ++
T Consensus 401 ~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~--~s 476 (577)
T 2ymu_A 401 ASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVA--FS 476 (577)
T ss_dssp EEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEE--EC
T ss_pred EEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEEEcCCCCCEEEEE--Ec
Confidence 999999999999964 45555544 5678899999999998765 4678999999754 44444333 34555544 48
Q ss_pred CCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccC
Q psy6442 133 SERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNN 212 (231)
Q Consensus 133 ~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 212 (231)
|++.++++++.|+.|++||. +++.+..+.+|..+|++++|+|++++|++++.|++|+|||. +++....+.++.+. ..
T Consensus 477 pd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~-v~ 553 (577)
T 2ymu_A 477 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS-VW 553 (577)
T ss_dssp TTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSC-EE
T ss_pred CCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCC-EE
Confidence 99999999999999999995 67888999999999999999999999999999999999996 67777777654433 33
Q ss_pred CCCCCccccc
Q psy6442 213 SLGLDSSGHL 222 (231)
Q Consensus 213 ~~~~~~~~~~ 222 (231)
.++|.++|..
T Consensus 554 ~~~fs~dg~~ 563 (577)
T 2ymu_A 554 GVAFSPDGQT 563 (577)
T ss_dssp EEEECTTSSC
T ss_pred EEEEcCCCCE
Confidence 4556666653
No 30
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.96 E-value=5.2e-27 Score=193.16 Aligned_cols=198 Identities=19% Similarity=0.229 Sum_probs=150.7
Q ss_pred CCcCCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEecccccccc----------------------------
Q psy6442 1 MCVDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------- 50 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------- 50 (231)
++.|+++++|+..+++ ++.++.+|.+.|.+++|+|+++++++++.|..+.
T Consensus 79 ~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~ 158 (345)
T 3fm0_A 79 ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW 158 (345)
T ss_dssp EETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred EECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence 4679999999987774 5788999999999999999999999998764321
Q ss_pred --CCCEEEEEeCCCCEEEEeCCCCCce--EEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcc-----------
Q psy6442 51 --NNTRLISCAEDKTVRLWDVSASAEV--QKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLE----------- 113 (231)
Q Consensus 51 --~~~~l~s~s~D~ti~iwd~~~~~~~--~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~----------- 113 (231)
++..|++++.|++|++||...++.. ..+. +...+.+++|+|+++.++. +.++.+++|+.....
T Consensus 159 ~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~ 238 (345)
T 3fm0_A 159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSD 238 (345)
T ss_dssp CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---
T ss_pred CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccC
Confidence 5678999999999999999877533 3332 4568999999999997765 568899999853211
Q ss_pred ----eEEeeec--cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc---------eeeeccCCCCCeeEEEEcCCC-
Q psy6442 114 ----LIKEHKV--PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA---------EIESFKGHFGPIHCVKFSPDG- 177 (231)
Q Consensus 114 ----~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~---------~~~~~~~h~~~V~~v~~spd~- 177 (231)
.+..... ...+.. +.+++++..+++++.|+.|++|+...+. ..+.+.+|...|++++|+|++
T Consensus 239 ~~~~~~~~~~~~h~~~v~~--v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~ 316 (345)
T 3fm0_A 239 PSWKCICTLSGFHSRTIYD--IAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP 316 (345)
T ss_dssp CEEEEEEEECSSCSSCEEE--EEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSST
T ss_pred CccceeEEecCCCCCcEEE--EEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCc
Confidence 1111111 123333 4458888899999999999999986542 123456899999999999997
Q ss_pred CEEEEeeCCCcEEEEeCCCCCee
Q psy6442 178 ELYASGSEDGTLRLWQTNVGKTY 200 (231)
Q Consensus 178 ~~laS~s~d~~v~iwd~~~~~~~ 200 (231)
.+||||+.|++|+||++.+++..
T Consensus 317 ~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 317 GLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp TEEEEEETTSCEEEEEECC----
T ss_pred eEEEEcCCCCcEEEEEecCCCCc
Confidence 59999999999999999888754
No 31
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=2.4e-27 Score=211.77 Aligned_cols=202 Identities=21% Similarity=0.262 Sum_probs=161.1
Q ss_pred CCcCCCceeeeccCC-----CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCce
Q psy6442 1 MCVDGKPMLRQGDTG-----DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEV 75 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g-----~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~ 75 (231)
+|.|++|++|+..++ ...+.+.+|.+.|.+++|+|++ +.|+|++.|++|+|||+.++.+.
T Consensus 401 ~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g---------------~~l~sgs~Dg~v~vwd~~~~~~~ 465 (694)
T 3dm0_A 401 ASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG---------------QFALSGSWDGELRLWDLAAGVST 465 (694)
T ss_dssp EETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS---------------SEEEEEETTSEEEEEETTTTEEE
T ss_pred EeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC---------------CEEEEEeCCCcEEEEECCCCcce
Confidence 478999999998653 4567899999999999999974 45899999999999999999887
Q ss_pred EEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeee----ccceeEEEEEEecCCC--CEEEEecCCCeE
Q psy6442 76 QKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHK----VPAQVHSASLLLNSER--PIFVCGGEDLKM 147 (231)
Q Consensus 76 ~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~g~~d~~i 147 (231)
..+. +...+.+++|+|++..++. +.++.+++||........... ....+.++.+ ++++ ..+++++.|++|
T Consensus 466 ~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~l~s~s~d~~v 543 (694)
T 3dm0_A 466 RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRF--SPNTLQPTIVSASWDKTV 543 (694)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEE--CSCSSSCEEEEEETTSCE
T ss_pred eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEE--eCCCCcceEEEEeCCCeE
Confidence 7765 5678999999999987654 568999999976543332221 1123555555 5554 689999999999
Q ss_pred EEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccc
Q psy6442 148 YKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGH 221 (231)
Q Consensus 148 ~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (231)
++||+.+++....+.+|.+.|++++|+|++++|+|++.|++|+|||+.+++.....+. +.....+.+.++++
T Consensus 544 ~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~ 615 (694)
T 3dm0_A 544 KVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA--NSVIHALCFSPNRY 615 (694)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC--SSCEEEEEECSSSS
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC--CCcEEEEEEcCCCc
Confidence 9999999999999999999999999999999999999999999999999987655543 33344455555544
No 32
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.96 E-value=1.8e-27 Score=198.39 Aligned_cols=199 Identities=23% Similarity=0.342 Sum_probs=157.6
Q ss_pred CceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc---------------------------CCCEEEEE
Q psy6442 6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------NNTRLISC 58 (231)
Q Consensus 6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~~~l~s~ 58 (231)
.+..|+..+..+.++|+||.+.|++++|+|+++.+++++.|..++ +++.|+++
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~ 126 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACG 126 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEEC
T ss_pred cccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEe
Confidence 345677777888999999999999999999999999998875432 67889999
Q ss_pred eCCCCEEEEeCCCCCc-------eEEE-EeCCcceeEEEccCCC--EEEEEcCCeEEEEECCCcceEEeeec------cc
Q psy6442 59 AEDKTVRLWDVSASAE-------VQKL-EFGAVPNSLEISRDGT--TITVTHGSCVTFLDANSLELIKEHKV------PA 122 (231)
Q Consensus 59 s~D~ti~iwd~~~~~~-------~~~~-~~~~~~~~v~~~~~~~--~~~~~~~~~i~~~d~~~~~~~~~~~~------~~ 122 (231)
+.|+++++||+.+... ...+ .+...+.++.+.|++. .+..+.++.+++||..+.+.+..+.. ..
T Consensus 127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~ 206 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA 206 (380)
T ss_dssp CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence 9999999999875321 1111 2345678888988753 44455789999999998877765421 12
Q ss_pred eeEEEEEEecCCCCEEEEecCCCeEEEEeCC-CcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeee
Q psy6442 123 QVHSASLLLNSERPIFVCGGEDLKMYKFDYS-TGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYG 201 (231)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~-~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~ 201 (231)
.+..+.+ ..+++.++++|+.|++|++||++ .+..+..+.+|.++|++++|+|++++|+|++.|++|+|||+++++...
T Consensus 207 ~v~~~~~-~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 207 DVLSLSI-NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp CEEEEEE-CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEE
T ss_pred CeEEEEe-ecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEE
Confidence 3443333 13378899999999999999997 456778899999999999999999999999999999999999998887
Q ss_pred eeec
Q psy6442 202 LWKC 205 (231)
Q Consensus 202 ~~~~ 205 (231)
.+..
T Consensus 286 ~~~~ 289 (380)
T 3iz6_a 286 VYNR 289 (380)
T ss_dssp EECC
T ss_pred Eecc
Confidence 7654
No 33
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=6.5e-28 Score=196.28 Aligned_cols=181 Identities=19% Similarity=0.281 Sum_probs=139.8
Q ss_pred CCcCCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc--eE
Q psy6442 1 MCVDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE--VQ 76 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~--~~ 76 (231)
++.|++|++|+..+++ ++.+|++|.+.|++++|+++ .++..|+||+.|++|++||+.+++. ..
T Consensus 31 gs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~-------------~~~~~l~s~s~D~~v~iWd~~~~~~~~~~ 97 (316)
T 3bg1_A 31 CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP-------------MYGNILASCSYDRKVIIWREENGTWEKSH 97 (316)
T ss_dssp EETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCG-------------GGSSCEEEEETTSCEEEECCSSSCCCEEE
T ss_pred EeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCC-------------CCCCEEEEEECCCEEEEEECCCCcceEEE
Confidence 4689999999998775 57889999999999999863 1245689999999999999988743 33
Q ss_pred EEE-eCCcceeEEEccC--CCEEEE-EcCCeEEEEECCCcceE---Eeeec-cceeEEEEEEecCC--------------
Q psy6442 77 KLE-FGAVPNSLEISRD--GTTITV-THGSCVTFLDANSLELI---KEHKV-PAQVHSASLLLNSE-------------- 134 (231)
Q Consensus 77 ~~~-~~~~~~~v~~~~~--~~~~~~-~~~~~i~~~d~~~~~~~---~~~~~-~~~~~~~~~~~~~~-------------- 134 (231)
.+. +...+.+++|+|+ +..++. +.++.+++||....... ..... ...+..+.+ +|+
T Consensus 98 ~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~~~~~~~~~~ 175 (316)
T 3bg1_A 98 EHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSW--APAVVPGSLIDHPSGQK 175 (316)
T ss_dssp EECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEE--CCCCCC------CCSCC
T ss_pred EccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEE--ccccCCccccccccccC
Confidence 332 4568999999998 555554 46789999998764322 11111 123333333 333
Q ss_pred ---CCEEEEecCCCeEEEEeCCCc---ceeeeccCCCCCeeEEEEcCCC----CEEEEeeCCCcEEEEeCCC
Q psy6442 135 ---RPIFVCGGEDLKMYKFDYSTG---AEIESFKGHFGPIHCVKFSPDG----ELYASGSEDGTLRLWQTNV 196 (231)
Q Consensus 135 ---~~~~~~g~~d~~i~~~d~~~~---~~~~~~~~h~~~V~~v~~spd~----~~laS~s~d~~v~iwd~~~ 196 (231)
+..+++|+.|++|++||.... ..+..+.+|..+|++++|+|++ .+|+|++.|++|+||++..
T Consensus 176 ~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 176 PNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp CCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred ccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 468999999999999999754 4677889999999999999986 7999999999999999876
No 34
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.3e-27 Score=191.98 Aligned_cols=180 Identities=19% Similarity=0.236 Sum_probs=140.1
Q ss_pred CCcCCCceeeeccCC--CeEeee-ec-ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC----
Q psy6442 1 MCVDGKPMLRQGDTG--DWIGTF-EG-HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS---- 72 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g--~~i~~l-~g-H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~---- 72 (231)
++.|++|++|+..++ +++..+ .+ |.+.|.+++|+|++ ..|++++.|++|+|||+...
T Consensus 30 ~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~---------------~~las~s~D~~v~iw~~~~~~~~~ 94 (330)
T 2hes_X 30 GSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT---------------SLLAAGSFDSTVSIWAKEESADRT 94 (330)
T ss_dssp EESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS---------------SEEEEEETTSCEEEEEC-------
T ss_pred EcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC---------------CEEEEEeCCCcEEEEEcccCcCcc
Confidence 468999999999876 456666 45 99999999999974 45899999999999998532
Q ss_pred ---CceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCc----ceEEeeec-cceeEEEEEEecCCCCEEEEec
Q psy6442 73 ---AEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSL----ELIKEHKV-PAQVHSASLLLNSERPIFVCGG 142 (231)
Q Consensus 73 ---~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~ 142 (231)
+++..+. +...+.+++|+|+++.++. +.++.+++||.... +.+..+.. ...+..+.+ +|++.++++++
T Consensus 95 ~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~--~p~~~~l~s~s 172 (330)
T 2hes_X 95 FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW--HPSEALLASSS 172 (330)
T ss_dssp CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE--CSSSSEEEEEE
T ss_pred ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE--CCCCCEEEEEc
Confidence 2233332 4568999999999998765 46889999998432 23333332 234555444 88999999999
Q ss_pred CCCeEEEEeCCCc--ceeeeccCCCCCeeEEEEcCC--CCEEEEeeCCCcEEEEeCCCC
Q psy6442 143 EDLKMYKFDYSTG--AEIESFKGHFGPIHCVKFSPD--GELYASGSEDGTLRLWQTNVG 197 (231)
Q Consensus 143 ~d~~i~~~d~~~~--~~~~~~~~h~~~V~~v~~spd--~~~laS~s~d~~v~iwd~~~~ 197 (231)
.|++|++||..++ +.+..+.+|.+.|.+++|+|+ +.+|+|++.|++|+|||+..+
T Consensus 173 ~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 173 YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 9999999998765 567889999999999999999 679999999999999998654
No 35
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.9e-27 Score=191.71 Aligned_cols=202 Identities=18% Similarity=0.255 Sum_probs=166.4
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF 80 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~ 80 (231)
++.||+|++|+..+++.+.++.+|.+.|.+++|+|++ ..|++++.|++|++||+.+++++..+..
T Consensus 50 ~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~---------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 114 (369)
T 3zwl_B 50 CSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT---------------KYCVTGSADYSIKLWDVSNGQCVATWKS 114 (369)
T ss_dssp EESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---------------SEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred EeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCC---------------CEEEEEeCCCeEEEEECCCCcEEEEeec
Confidence 3579999999999999999999999999999999974 4589999999999999999999988888
Q ss_pred CCcceeEEEccCCCEEEEEc-C-----CeEEEEECCCcceEEe-----------eec-cc--eeEEEEEEecCCCCEEEE
Q psy6442 81 GAVPNSLEISRDGTTITVTH-G-----SCVTFLDANSLELIKE-----------HKV-PA--QVHSASLLLNSERPIFVC 140 (231)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~-~-----~~i~~~d~~~~~~~~~-----------~~~-~~--~~~~~~~~~~~~~~~~~~ 140 (231)
...+.+++|+|++..++++. + +.+.+||......... ... .. .+.. +.+++++..+++
T Consensus 115 ~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~ 192 (369)
T 3zwl_B 115 PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV--AGWSTKGKYIIA 192 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE--EEECGGGCEEEE
T ss_pred CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE--EEEcCCCCEEEE
Confidence 88999999999999887654 4 7999999765432111 111 11 3333 445888999999
Q ss_pred ecCCCeEEEEeCCC-cceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcc
Q psy6442 141 GGEDLKMYKFDYST-GAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSS 219 (231)
Q Consensus 141 g~~d~~i~~~d~~~-~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (231)
++.++.|++||+.+ ...+..+..|..+|.+++|+|++.+|++++.|+.|++||+.+++....+.. +.....+.+.++
T Consensus 193 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~ 270 (369)
T 3zwl_B 193 GHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET--DCPLNTAVITPL 270 (369)
T ss_dssp EETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--SSCEEEEEECSS
T ss_pred EcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecC--CCCceeEEecCC
Confidence 99999999999988 678888999999999999999999999999999999999999998877773 333444455554
Q ss_pred cc
Q psy6442 220 GH 221 (231)
Q Consensus 220 ~~ 221 (231)
+.
T Consensus 271 ~~ 272 (369)
T 3zwl_B 271 KE 272 (369)
T ss_dssp SS
T ss_pred Cc
Confidence 44
No 36
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.96 E-value=4.6e-27 Score=207.29 Aligned_cols=198 Identities=18% Similarity=0.234 Sum_probs=153.4
Q ss_pred cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-----------------------------CCC
Q psy6442 3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-----------------------------NNT 53 (231)
Q Consensus 3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-----------------------------~~~ 53 (231)
.+++|+||+..+++.+.+|.+|.+.|.+++|+|+|+++++++.|..++ +++
T Consensus 37 ~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~ 116 (611)
T 1nr0_A 37 NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK 116 (611)
T ss_dssp ETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred CCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCC
Confidence 356899999999999999999999999999999988776665542211 344
Q ss_pred EEEEEeCC----CCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCE-E-EEEcCCeEEEEECCCcceEEeeecc-ceeE
Q psy6442 54 RLISCAED----KTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTT-I-TVTHGSCVTFLDANSLELIKEHKVP-AQVH 125 (231)
Q Consensus 54 ~l~s~s~D----~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~-~-~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~ 125 (231)
.|++++.| ++|++||. ++....+. +...+.+++|+|++.. + ..+.++.+++||..+.+....+..+ ..+.
T Consensus 117 ~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~ 194 (611)
T 1nr0_A 117 RIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVH 194 (611)
T ss_dssp EEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEE
T ss_pred EEEEEECCCCceeEEEEeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceE
Confidence 55555544 24555553 22222222 3457889999999863 4 3467899999998887776665543 3455
Q ss_pred EEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeecc-------CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442 126 SASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK-------GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198 (231)
Q Consensus 126 ~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~-------~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~ 198 (231)
.+.+ +|++.++++++.|++|++||..+++.+..+. +|.++|.+++|+|++++|+|++.|++|+|||+.+++
T Consensus 195 ~v~f--spdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~ 272 (611)
T 1nr0_A 195 SVRY--NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 272 (611)
T ss_dssp EEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred EEEE--CCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 5444 8999999999999999999999988888774 799999999999999999999999999999999988
Q ss_pred eeeeee
Q psy6442 199 TYGLWK 204 (231)
Q Consensus 199 ~~~~~~ 204 (231)
....+.
T Consensus 273 ~~~~~~ 278 (611)
T 1nr0_A 273 VEKTIP 278 (611)
T ss_dssp EEEEEE
T ss_pred eeeeec
Confidence 766554
No 37
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=9.2e-27 Score=193.32 Aligned_cols=206 Identities=14% Similarity=0.115 Sum_probs=156.3
Q ss_pred CCcCCCceeeeccCCCe-Eee--------eecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC
Q psy6442 1 MCVDGKPMLRQGDTGDW-IGT--------FEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA 71 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~-i~~--------l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~ 71 (231)
++.|+++|+|+..+++. +.. ...+...+..++|+|||++++ ++|++.|++|+|||+.+
T Consensus 100 ~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la-------------~as~~~d~~i~iwd~~~ 166 (365)
T 4h5i_A 100 GKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAA-------------IASSKVPAIMRIIDPSD 166 (365)
T ss_dssp TSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEE-------------EEESCSSCEEEEEETTT
T ss_pred ecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEE-------------EEECCCCCEEEEeECCC
Confidence 35688999999765532 221 124456789999999987653 45677899999999999
Q ss_pred CCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeec---cceeEEEEEEecCCCCEEEEecCCC---
Q psy6442 72 SAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKV---PAQVHSASLLLNSERPIFVCGGEDL--- 145 (231)
Q Consensus 72 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~d~--- 145 (231)
++++..+.+...+.+++|+|+++.++.+.++.+.+|+..+...+..... ...+..+. ++|++..+++++.++
T Consensus 167 ~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~--fspdg~~l~~~s~d~~~~ 244 (365)
T 4h5i_A 167 LTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKIN--FIADDTVLIAASLKKGKG 244 (365)
T ss_dssp TEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEE--EEETTEEEEEEEESSSCC
T ss_pred CcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEE--EcCCCCEEEEEecCCcce
Confidence 9999888888889999999999999888788888888776665443221 22344444 478899999887775
Q ss_pred -eEEEEeCCCcce----eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee-eccCCcccCCCCCCcc
Q psy6442 146 -KMYKFDYSTGAE----IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW-KCIEGGLNNSLGLDSS 219 (231)
Q Consensus 146 -~i~~~d~~~~~~----~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~ 219 (231)
.++.|+...... ...+.+|..+|++++|||||++||+|+.|++|+|||+++++..... +++. .....++|.++
T Consensus 245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~-~~V~~v~fSpd 323 (365)
T 4h5i_A 245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHS-FAITEVTISPD 323 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSS-SCEEEEEECTT
T ss_pred eEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCccc-CCEEEEEECCC
Confidence 688898865432 4567889999999999999999999999999999999999987654 4332 23455667776
Q ss_pred ccc
Q psy6442 220 GHL 222 (231)
Q Consensus 220 ~~~ 222 (231)
|..
T Consensus 324 g~~ 326 (365)
T 4h5i_A 324 STY 326 (365)
T ss_dssp SCE
T ss_pred CCE
Confidence 654
No 38
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.4e-28 Score=201.37 Aligned_cols=201 Identities=16% Similarity=0.194 Sum_probs=149.2
Q ss_pred CCcCCCceeeeccCC--CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC---ce
Q psy6442 1 MCVDGKPMLRQGDTG--DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA---EV 75 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g--~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~---~~ 75 (231)
++.||+|++|+..++ +.+.++.+|.+.|.+++|+|++ .+|++++.|++|++||+.+++ ..
T Consensus 29 ~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---------------~~l~s~s~d~~v~vwd~~~~~~~~~~ 93 (377)
T 3dwl_C 29 TTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS---------------NRIVTCSQDRNAYVYEKRPDGTWKQT 93 (377)
T ss_dssp CCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT---------------CCEEEEETTSSEEEC------CCCCE
T ss_pred ecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC---------------CEEEEEeCCCeEEEEEcCCCCceeee
Confidence 468999999999988 7899999999999999999974 458999999999999999876 33
Q ss_pred EEE-EeCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcce---EEeeec--cceeEEEEEEecCCCCEEEEecCCCeEE
Q psy6442 76 QKL-EFGAVPNSLEISRDGTTITV-THGSCVTFLDANSLEL---IKEHKV--PAQVHSASLLLNSERPIFVCGGEDLKMY 148 (231)
Q Consensus 76 ~~~-~~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 148 (231)
..+ .+...+.+++|+|++..++. +.++.+++||...... ...... ...+..+. ++|++.++++++.|+.|+
T Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~l~~~~~d~~i~ 171 (377)
T 3dwl_C 94 LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLD--WHPNNVLLAAGCADRKAY 171 (377)
T ss_dssp EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEE--ECTTSSEEEEEESSSCEE
T ss_pred eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEE--EcCCCCEEEEEeCCCEEE
Confidence 332 35678999999999987655 5678999999887652 444443 33455444 488999999999999999
Q ss_pred EEeCC------------------CcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe----eeeeecc
Q psy6442 149 KFDYS------------------TGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT----YGLWKCI 206 (231)
Q Consensus 149 ~~d~~------------------~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~----~~~~~~~ 206 (231)
+||+. .++.+..+ +|..+|.+++|+|++++|++++.|++|+|||+.+++. ...++..
T Consensus 172 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 250 (377)
T 3dwl_C 172 VLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS 250 (377)
T ss_dssp EEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS
T ss_pred EEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC
Confidence 99984 35566777 8999999999999999999999999999999999886 5555543
Q ss_pred CCcccCCCCCCccc
Q psy6442 207 EGGLNNSLGLDSSG 220 (231)
Q Consensus 207 ~~~~~~~~~~~~~~ 220 (231)
.. ....++|.++|
T Consensus 251 ~~-~v~~~~~s~~~ 263 (377)
T 3dwl_C 251 QL-PLRSLLWANES 263 (377)
T ss_dssp SS-CEEEEEEEETT
T ss_pred CC-ceEEEEEcCCC
Confidence 22 12334444444
No 39
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.96 E-value=7e-27 Score=192.38 Aligned_cols=178 Identities=19% Similarity=0.282 Sum_probs=142.8
Q ss_pred CCcCCCceeeeccCCCeEee---eecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc--e
Q psy6442 1 MCVDGKPMLRQGDTGDWIGT---FEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE--V 75 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~---l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~--~ 75 (231)
++.|++|++|+..+++.+.. ..+|.+.|.+++|+|++ .+|++++.|++++|||+..+.. +
T Consensus 34 ~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g---------------~~l~s~s~D~~v~iw~~~~~~~~~~ 98 (345)
T 3fm0_A 34 CGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG---------------NYLASASFDATTCIWKKNQDDFECV 98 (345)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS---------------SEEEEEETTSCEEEEEECCC-EEEE
T ss_pred EcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC---------------CEEEEEECCCcEEEEEccCCCeEEE
Confidence 46899999999988865432 36899999999999974 4589999999999999887643 3
Q ss_pred EEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcce---EEeeec-cceeEEEEEEecCCCCEEEEecCCCeEEE
Q psy6442 76 QKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLEL---IKEHKV-PAQVHSASLLLNSERPIFVCGGEDLKMYK 149 (231)
Q Consensus 76 ~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~~ 149 (231)
..+. +...+.+++|+|++..++. +.++.+++||...... +..... ...+..+. ++|++.++++++.|+.|++
T Consensus 99 ~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~--~~p~~~~l~s~s~d~~i~~ 176 (345)
T 3fm0_A 99 TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV--WHPSQELLASASYDDTVKL 176 (345)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE--ECSSSSCEEEEETTSCEEE
T ss_pred EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE--ECCCCCEEEEEeCCCcEEE
Confidence 3443 4568999999999998765 5688999999876533 222222 23454444 4889999999999999999
Q ss_pred EeCCCcc--eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442 150 FDYSTGA--EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN 195 (231)
Q Consensus 150 ~d~~~~~--~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~ 195 (231)
||..++. ...++.+|..+|++++|+|++++|++++.|++|+||+..
T Consensus 177 w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 177 YREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 9998764 457789999999999999999999999999999999963
No 40
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.95 E-value=1.1e-26 Score=192.86 Aligned_cols=176 Identities=13% Similarity=0.071 Sum_probs=138.3
Q ss_pred CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE--
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-- 79 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-- 79 (231)
+.|++||+|+..+++.+.+++ |.+.|.+++|+|+|+ +|++++ |+++++|+..+++......
T Consensus 154 ~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~---------------~l~s~s-~~~~~~~~~~~~~~~~~~~~~ 216 (365)
T 4h5i_A 154 KVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGK---------------VVAYIT-GSSLEVISTVTGSCIARKTDF 216 (365)
T ss_dssp CSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSS---------------EEEEEC-SSCEEEEETTTCCEEEEECCC
T ss_pred CCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCc---------------eEEecc-ceeEEEEEeccCcceeeeecC
Confidence 479999999999999999886 888999999999855 467776 5567777777776654432
Q ss_pred -eCCcceeEEEccCCCEEEEE-cCC----eEEEEECCCcceE--Ee--eec-cceeEEEEEEecCCCCEEEEecCCCeEE
Q psy6442 80 -FGAVPNSLEISRDGTTITVT-HGS----CVTFLDANSLELI--KE--HKV-PAQVHSASLLLNSERPIFVCGGEDLKMY 148 (231)
Q Consensus 80 -~~~~~~~v~~~~~~~~~~~~-~~~----~i~~~d~~~~~~~--~~--~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 148 (231)
+...+.+++|+|++..++.+ .++ .+..|+....... .. ... ...+.+ +.++|+++++++|+.|++|+
T Consensus 217 ~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~--~~~Spdg~~lasgs~D~~V~ 294 (365)
T 4h5i_A 217 DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITS--MDVDMKGELAVLASNDNSIA 294 (365)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEE--EEECTTSCEEEEEETTSCEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEe--EEECCCCCceEEEcCCCEEE
Confidence 24568899999999987654 333 5677886554331 11 221 224444 44599999999999999999
Q ss_pred EEeCCCcceeeec-cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442 149 KFDYSTGAEIESF-KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV 196 (231)
Q Consensus 149 ~~d~~~~~~~~~~-~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~ 196 (231)
+||+.+++++.++ .+|..+|++|+|||||++|||+|.|++||||++..
T Consensus 295 iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 295 LVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999988874 79999999999999999999999999999999843
No 41
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.95 E-value=1.2e-26 Score=192.06 Aligned_cols=197 Identities=15% Similarity=0.153 Sum_probs=155.6
Q ss_pred CCCceeeeccCCCe----EeeeecccccEEEEEECCCCceeEeccccccc------------------------------
Q psy6442 4 DGKPMLRQGDTGDW----IGTFEGHKGCVWGVDINKDASKAASGAADFQA------------------------------ 49 (231)
Q Consensus 4 d~~~~~~~~~~g~~----i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~------------------------------ 49 (231)
|+++++|+..++.. .....+|.+.|.+++|+|++..++.+ .|..+
T Consensus 69 d~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s-~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~ 147 (357)
T 4g56_B 69 GGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVAS-DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV 147 (357)
T ss_dssp CEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEE-TTSCEEEC--------CCCCEEECCCSSCEEEEEE
T ss_pred cCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEE-CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEE
Confidence 77888888877654 34456899999999999998766544 33211
Q ss_pred -cCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCC-E-EEEEcCCeEEEEECCCcceEEeeecc---c
Q psy6442 50 -KNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGT-T-ITVTHGSCVTFLDANSLELIKEHKVP---A 122 (231)
Q Consensus 50 -~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~-~-~~~~~~~~i~~~d~~~~~~~~~~~~~---~ 122 (231)
.++++|++++.|++|++||+.+++++..+. +...+.+++++|++. . +..+.++.+++||.++.+........ .
T Consensus 148 spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~ 227 (357)
T 4g56_B 148 FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDT 227 (357)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCS
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccc
Confidence 167899999999999999999998887775 456889999999875 3 34567899999999887766554332 2
Q ss_pred eeEEEEEEecCC-CCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCee
Q psy6442 123 QVHSASLLLNSE-RPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVGKTY 200 (231)
Q Consensus 123 ~~~~~~~~~~~~-~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~~~~ 200 (231)
.+..+ .++|+ +.++++|+.|+.|++||+++++.+.++.+|..+|++++|+|++ ++|||++.|++|+|||+++++.+
T Consensus 228 ~v~~v--~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 228 IPTSV--TWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF 305 (357)
T ss_dssp CEEEE--EECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred cccch--hhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence 34433 44665 5688999999999999999999999999999999999999987 68999999999999999999876
Q ss_pred eee
Q psy6442 201 GLW 203 (231)
Q Consensus 201 ~~~ 203 (231)
...
T Consensus 306 ~~~ 308 (357)
T 4g56_B 306 RDL 308 (357)
T ss_dssp EEC
T ss_pred EEC
Confidence 543
No 42
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.95 E-value=7.8e-26 Score=183.41 Aligned_cols=198 Identities=16% Similarity=0.232 Sum_probs=166.5
Q ss_pred CCCceeeeccCCCeEee---ee--cccccEEEEEECCCCceeEeccccccc-----------------------------
Q psy6442 4 DGKPMLRQGDTGDWIGT---FE--GHKGCVWGVDINKDASKAASGAADFQA----------------------------- 49 (231)
Q Consensus 4 d~~~~~~~~~~g~~i~~---l~--gH~~~V~~~~~~~~~~~~~s~~~d~~~----------------------------- 49 (231)
||++++|+..+++.... +. +|.+.|.++.|+|+++.+++++.+..+
T Consensus 71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ 150 (337)
T 1gxr_A 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS 150 (337)
T ss_dssp BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC
T ss_pred CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEEC
Confidence 89999999988764433 33 899999999999999999988665321
Q ss_pred cCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccceeEEE
Q psy6442 50 KNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQVHSA 127 (231)
Q Consensus 50 ~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 127 (231)
.++..|++++.|++|++||+.+++....+. +...+.+++++|++..++++ .++.+.+||....+.+.....+..+..+
T Consensus 151 ~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~ 230 (337)
T 1gxr_A 151 PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSL 230 (337)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEE
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEE
Confidence 166789999999999999999988877765 46678999999999877664 6789999999988887777666666555
Q ss_pred EEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK 204 (231)
Q Consensus 128 ~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~ 204 (231)
.+ +|++..+++++.++.|++||+.+++. ..+..|..+|.+++|+|++++|++++.|+.|++||+.+++......
T Consensus 231 ~~--s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~ 304 (337)
T 1gxr_A 231 GY--CPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 304 (337)
T ss_dssp EE--CTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EE--CCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec
Confidence 54 88999999999999999999988764 4667899999999999999999999999999999999998774443
No 43
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.95 E-value=2e-26 Score=205.79 Aligned_cols=192 Identities=21% Similarity=0.305 Sum_probs=159.1
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc------------------------------
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK------------------------------ 50 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~------------------------------ 50 (231)
++.||+|++|+..+++.+.++.+|.+.|.+++|+|+++.+++++.|..++
T Consensus 448 gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 448 GSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS
T ss_pred EeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC
Confidence 46799999999999999999999999999999999999999998764321
Q ss_pred C--CCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccceeEE
Q psy6442 51 N--NTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQVHS 126 (231)
Q Consensus 51 ~--~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 126 (231)
+ ...|++++.|++|++||++.+++...+. +...+.+++++|++..++. +.++.|++||..+.+.+........+..
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~ 607 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 607 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEE
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEE
Confidence 1 2479999999999999999988877765 5678999999999998765 4688999999999888777666556665
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCC-------------------CCeeEEEEcCCCCEEEEeeCCC
Q psy6442 127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHF-------------------GPIHCVKFSPDGELYASGSEDG 187 (231)
Q Consensus 127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~-------------------~~V~~v~~spd~~~laS~s~d~ 187 (231)
+++ +|++.+++++. +..|++||+.++..+..+..|. ..+++++|||++++|+||+.||
T Consensus 608 ~~~--sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 608 LCF--SPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp EEE--CSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred EEE--cCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 555 78888777655 5669999999888776654321 2378999999999999999999
Q ss_pred cEEEEeCC
Q psy6442 188 TLRLWQTN 195 (231)
Q Consensus 188 ~v~iwd~~ 195 (231)
+|+||++.
T Consensus 685 ~i~iW~i~ 692 (694)
T 3dm0_A 685 VIRVWGIG 692 (694)
T ss_dssp EEEEEEC-
T ss_pred eEEEEecc
Confidence 99999975
No 44
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.95 E-value=3.5e-26 Score=191.56 Aligned_cols=197 Identities=17% Similarity=0.227 Sum_probs=160.0
Q ss_pred CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc----------------------------cCCC
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA----------------------------KNNT 53 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~----------------------------~~~~ 53 (231)
+.||+|++|+..+++.+.++.+|.+.|.++.|+ ++.+++++.+..+ .++.
T Consensus 153 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 230 (401)
T 4aez_A 153 LGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL 230 (401)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS
T ss_pred CCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC
Confidence 568999999999999999999999999999994 5677777655321 1678
Q ss_pred EEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-E---cCCeEEEEECCCcceEEeeeccceeEEEE
Q psy6442 54 RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-T---HGSCVTFLDANSLELIKEHKVPAQVHSAS 128 (231)
Q Consensus 54 ~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 128 (231)
.|++++.|++|++||+++++....+. +...+.+++|+|++..+++ + .++.+++||..+.+.+..+..+..+..+.
T Consensus 231 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~ 310 (401)
T 4aez_A 231 QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLI 310 (401)
T ss_dssp EEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred EEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 89999999999999999988877764 5678899999998765444 3 37899999999988888877666666555
Q ss_pred EEecCCCCEEEE--ecCCCeEEEEeCCCccee--eeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442 129 LLLNSERPIFVC--GGEDLKMYKFDYSTGAEI--ESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL 202 (231)
Q Consensus 129 ~~~~~~~~~~~~--g~~d~~i~~~d~~~~~~~--~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~ 202 (231)
+ ++++..+++ |+.|+.|++||+.++... ..+.+|...|.+++|+|++.+|++++.|+.|+||++.+++....
T Consensus 311 ~--s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 311 W--SPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp E--CSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred E--CCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 5 888888888 668999999999886544 44679999999999999999999999999999999999886543
No 45
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.95 E-value=5.1e-26 Score=190.37 Aligned_cols=179 Identities=20% Similarity=0.322 Sum_probs=147.9
Q ss_pred cCCCceeeeccCCCeEeeeecccc------------------cEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCE
Q psy6442 3 VDGKPMLRQGDTGDWIGTFEGHKG------------------CVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTV 64 (231)
Q Consensus 3 ~d~~~~~~~~~~g~~i~~l~gH~~------------------~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti 64 (231)
.|+++++|+..+|+.+..+.+|.. .|.+++|+|++ +.|++++.|++|
T Consensus 83 ~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg---------------~~l~s~~~d~~i 147 (393)
T 1erj_A 83 CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG---------------KFLATGAEDRLI 147 (393)
T ss_dssp CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS---------------SEEEEEETTSCE
T ss_pred cCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC---------------CEEEEEcCCCeE
Confidence 478999999999999999887753 38999999974 458999999999
Q ss_pred EEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccceeEEEEEEecC-CCCEEEEe
Q psy6442 65 RLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQVHSASLLLNS-ERPIFVCG 141 (231)
Q Consensus 65 ~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g 141 (231)
++||+.+++.+..+. +...+.+++|+|++..++. +.++.+++||..+.+..........+..+.+ +| ++.++++|
T Consensus 148 ~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~ 225 (393)
T 1erj_A 148 RIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV--SPGDGKYIAAG 225 (393)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE--CSTTCCEEEEE
T ss_pred EEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEE--ECCCCCEEEEE
Confidence 999999988777765 5667999999999987765 5688999999998887766665555555444 66 88899999
Q ss_pred cCCCeEEEEeCCCcceeeec-------cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442 142 GEDLKMYKFDYSTGAEIESF-------KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198 (231)
Q Consensus 142 ~~d~~i~~~d~~~~~~~~~~-------~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~ 198 (231)
+.|+.|++||..++..+..+ .+|...|.+++|+|++++|++++.|++|+|||+++.+
T Consensus 226 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 226 SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred cCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 99999999999988877665 6899999999999999999999999999999997653
No 46
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.5e-26 Score=193.38 Aligned_cols=197 Identities=15% Similarity=0.230 Sum_probs=163.0
Q ss_pred CcCCCceeeeccC----CCeEeeeecccccEEEEEECCC-CceeEeccccccc---------------------------
Q psy6442 2 CVDGKPMLRQGDT----GDWIGTFEGHKGCVWGVDINKD-ASKAASGAADFQA--------------------------- 49 (231)
Q Consensus 2 ~~d~~~~~~~~~~----g~~i~~l~gH~~~V~~~~~~~~-~~~~~s~~~d~~~--------------------------- 49 (231)
+.||+|++|+..+ .+.+..+.+|.+.|.+++|+|+ ++++++++.|..+
T Consensus 86 ~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 165 (416)
T 2pm9_A 86 LDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV 165 (416)
T ss_dssp ESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS
T ss_pred ccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCC
Confidence 5799999999987 4589999999999999999998 8899988654211
Q ss_pred ---------cC-CCEEEEEeCCCCEEEEeCCCCCceEEEEe-------CCcceeEEEccCCC-EEEEE-cCC---eEEEE
Q psy6442 50 ---------KN-NTRLISCAEDKTVRLWDVSASAEVQKLEF-------GAVPNSLEISRDGT-TITVT-HGS---CVTFL 107 (231)
Q Consensus 50 ---------~~-~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-------~~~~~~v~~~~~~~-~~~~~-~~~---~i~~~ 107 (231)
.+ +..|++++.|++|++||+.+++.+..+.. ...+.+++|+|++. .++++ .++ .+++|
T Consensus 166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~ 245 (416)
T 2pm9_A 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW 245 (416)
T ss_dssp CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence 03 57899999999999999999988877765 46789999999974 55544 455 99999
Q ss_pred ECCCc-ceEEeee--ccceeEEEEEEecC-CCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCC-CEEEE
Q psy6442 108 DANSL-ELIKEHK--VPAQVHSASLLLNS-ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDG-ELYAS 182 (231)
Q Consensus 108 d~~~~-~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~-~~laS 182 (231)
|.+.. .....+. ....+..+.+ +| ++.++++++.|++|++||+.+++.+..+.+|..+|.+++|+|++ .+|++
T Consensus 246 d~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s 323 (416)
T 2pm9_A 246 DLRNANTPLQTLNQGHQKGILSLDW--CHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFAC 323 (416)
T ss_dssp ETTSTTSCSBCCCSCCSSCEEEEEE--CSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEE
T ss_pred eCCCCCCCcEEeecCccCceeEEEe--CCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEE
Confidence 99875 4444444 2334555444 77 88899999999999999999999999999999999999999998 89999
Q ss_pred eeCCCcEEEEeCCCCCee
Q psy6442 183 GSEDGTLRLWQTNVGKTY 200 (231)
Q Consensus 183 ~s~d~~v~iwd~~~~~~~ 200 (231)
++.|+.|+||++.+++..
T Consensus 324 ~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 324 ASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp CCSSSEEEEEESCCCCCS
T ss_pred EecCCcEEEEEccCCCCC
Confidence 999999999999887643
No 47
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=5e-26 Score=184.50 Aligned_cols=203 Identities=15% Similarity=0.248 Sum_probs=158.5
Q ss_pred CCcCCCceeeeccCC----CeEeeeecccccEEEEEECC--CCceeEecccccccc------------------------
Q psy6442 1 MCVDGKPMLRQGDTG----DWIGTFEGHKGCVWGVDINK--DASKAASGAADFQAK------------------------ 50 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g----~~i~~l~gH~~~V~~~~~~~--~~~~~~s~~~d~~~~------------------------ 50 (231)
++.||+|++|+..++ +.+..+.+|.+.|.+++|+| +++.+++++.|..+.
T Consensus 29 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 108 (351)
T 3f3f_A 29 CSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLND 108 (351)
T ss_dssp EETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECC
T ss_pred eeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecc
Confidence 367999999999877 47888899999999999999 589999887653211
Q ss_pred ------------C--CCEEEEEeCCCCEEEEeCCCCCceEEEE--------------eCCcceeEEEccC---CCEEEEE
Q psy6442 51 ------------N--NTRLISCAEDKTVRLWDVSASAEVQKLE--------------FGAVPNSLEISRD---GTTITVT 99 (231)
Q Consensus 51 ------------~--~~~l~s~s~D~ti~iwd~~~~~~~~~~~--------------~~~~~~~v~~~~~---~~~~~~~ 99 (231)
+ +..|++++.|++|++||+++++.+..+. ....+.+++|+|+ +..++++
T Consensus 109 ~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 188 (351)
T 3f3f_A 109 SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS 188 (351)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE
T ss_pred cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEe
Confidence 3 7889999999999999998876543322 2346789999997 6666655
Q ss_pred -cCCeEEEEECCCcce--EEeeec-cceeEEEEEEecCCC----CEEEEecCCCeEEEEeCCCc----------------
Q psy6442 100 -HGSCVTFLDANSLEL--IKEHKV-PAQVHSASLLLNSER----PIFVCGGEDLKMYKFDYSTG---------------- 155 (231)
Q Consensus 100 -~~~~i~~~d~~~~~~--~~~~~~-~~~~~~~~~~~~~~~----~~~~~g~~d~~i~~~d~~~~---------------- 155 (231)
.++.+.+++...... ...... ...+..+.+ +|++ .++++++.|+.|++||+..+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~--~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 266 (351)
T 3f3f_A 189 ALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISW--APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMF 266 (351)
T ss_dssp ETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEE--CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------
T ss_pred cCCCcEEEEccCCCceeeeeecCCCCcceeEEEE--CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceecc
Confidence 456776666655543 233322 234555444 7777 78999999999999999764
Q ss_pred ------------------------------ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442 156 ------------------------------AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 156 ------------------------------~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~ 205 (231)
+.+..+.+|..+|++++|+|++++|++++.|+.|+||++.+++.+...+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~ 346 (351)
T 3f3f_A 267 DNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSV 346 (351)
T ss_dssp ------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred CCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhheee
Confidence 56677889999999999999999999999999999999999887665554
No 48
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.2e-26 Score=188.27 Aligned_cols=193 Identities=19% Similarity=0.195 Sum_probs=139.8
Q ss_pred CCcCCCceeeecc-------CCCeEeeeecccccEEEEEECCCCceeEeccccccc------------------------
Q psy6442 1 MCVDGKPMLRQGD-------TGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA------------------------ 49 (231)
Q Consensus 1 ~~~d~~~~~~~~~-------~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~------------------------ 49 (231)
++.|++|++|+.. +++.+.++++|.+.|.+++|+|+++++++++.|..+
T Consensus 76 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~ 155 (330)
T 2hes_X 76 GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155 (330)
T ss_dssp EETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred EeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence 4679999999974 346788899999999999999999999999765321
Q ss_pred -------cCCCEEEEEeCCCCEEEEeCCCC--CceEEEE-eCCcceeEEEccC--CCEEE-EEcCCeEEEEECCCc----
Q psy6442 50 -------KNNTRLISCAEDKTVRLWDVSAS--AEVQKLE-FGAVPNSLEISRD--GTTIT-VTHGSCVTFLDANSL---- 112 (231)
Q Consensus 50 -------~~~~~l~s~s~D~ti~iwd~~~~--~~~~~~~-~~~~~~~v~~~~~--~~~~~-~~~~~~i~~~d~~~~---- 112 (231)
.++..|+|++.|++|++||...+ +++..+. +...+.+++|+|+ +..++ .+.++.+++||....
T Consensus 156 v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~ 235 (330)
T 2hes_X 156 VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD 235 (330)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTS
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccc
Confidence 15678999999999999998766 4444443 4568899999998 55554 456899999997543
Q ss_pred ----ceEEeee--ccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc--ee-eeccCCCC-CeeEEEEcC--CCCEE
Q psy6442 113 ----ELIKEHK--VPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA--EI-ESFKGHFG-PIHCVKFSP--DGELY 180 (231)
Q Consensus 113 ----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~--~~-~~~~~h~~-~V~~v~~sp--d~~~l 180 (231)
....... ....+..+.+ ++++ .+++++.|++|++||..+++ .+ ..+.+|.. .|.+++|+| ++++|
T Consensus 236 ~~~~~~~~~~~~~h~~~v~~v~~--s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~l 312 (330)
T 2hes_X 236 QQEWVCEAILPDVHKRQVYNVAW--GFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTIL 312 (330)
T ss_dssp CEEEEEEEECCSCCSSCEEEEEE--CTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCE
T ss_pred cceeEEeeecccccccceEEEEE--cCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEE
Confidence 1222222 1234555554 5444 78999999999999987763 23 33467887 899999999 68999
Q ss_pred EEeeCCCcEEEEeCCC
Q psy6442 181 ASGSEDGTLRLWQTNV 196 (231)
Q Consensus 181 aS~s~d~~v~iwd~~~ 196 (231)
||++.|++|+||+++.
T Consensus 313 as~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 313 ATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEETTSEEEEEEC--
T ss_pred EEecCCCcEEEEEecc
Confidence 9999999999999864
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=1.4e-26 Score=194.01 Aligned_cols=190 Identities=12% Similarity=0.160 Sum_probs=158.7
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE- 79 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~- 79 (231)
++.||+|++|+..+++.+..+.+|.+.|.+++|+|++ ..|++++.|++|++||+.+++.+..+.
T Consensus 115 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---------------~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 179 (420)
T 3vl1_A 115 GTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSG---------------EALISSSQDMQLKIWSVKDGSNPRTLIG 179 (420)
T ss_dssp EETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTS---------------SEEEEEETTSEEEEEETTTCCCCEEEEC
T ss_pred EECCCCEEEEeCCCcceeeecccccCccEEEEECCCC---------------CEEEEEeCCCeEEEEeCCCCcCceEEcC
Confidence 3679999999999999999999999999999999974 458999999999999999998888776
Q ss_pred eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeecc----ceeEEEEE-------------------EecCCC
Q psy6442 80 FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVP----AQVHSASL-------------------LLNSER 135 (231)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~~~-------------------~~~~~~ 135 (231)
+...+.+++|+|++..++. +.++.+++||..+.+.+..+..+ ..+..+.+ .+++++
T Consensus 180 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 259 (420)
T 3vl1_A 180 HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG 259 (420)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC
Confidence 5678999999999997765 46789999999988877766431 22333332 235788
Q ss_pred CEEEEecCCCeEEEEeCCCcceeeec-cCCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCCCCe-eeeeec
Q psy6442 136 PIFVCGGEDLKMYKFDYSTGAEIESF-KGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTNVGKT-YGLWKC 205 (231)
Q Consensus 136 ~~~~~g~~d~~i~~~d~~~~~~~~~~-~~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~~~~~-~~~~~~ 205 (231)
..+++++.|+.|++||+++++.+..+ .+|..+|.+++|+|++. +|++++.|+.|++||+++++. ...+..
T Consensus 260 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 332 (420)
T 3vl1_A 260 KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI 332 (420)
T ss_dssp EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc
Confidence 89999999999999999988877665 46889999999999998 999999999999999998753 555544
No 50
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5e-26 Score=182.92 Aligned_cols=212 Identities=19% Similarity=0.243 Sum_probs=168.3
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc----------------------------CC
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK----------------------------NN 52 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~----------------------------~~ 52 (231)
++.||+|++|+..+++.+..+..|.+.|.+++|+|+++.+++++.+..+. ++
T Consensus 35 ~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (313)
T 3odt_A 35 VSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQD 114 (313)
T ss_dssp EETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEET
T ss_pred EEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecC
Confidence 46799999999999999999999999999999999999999987764321 56
Q ss_pred CEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEcc-CCCEEEE-EcCCeEEEEECCCcceEEeeec--cceeEEE
Q psy6442 53 TRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISR-DGTTITV-THGSCVTFLDANSLELIKEHKV--PAQVHSA 127 (231)
Q Consensus 53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~-~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~ 127 (231)
..|++++.|++|++|| .++....+. +...+.++.+.| ++..+++ +.++.+++||.. ........ ...+..+
T Consensus 115 ~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~ 190 (313)
T 3odt_A 115 GVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHL 190 (313)
T ss_dssp TEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEE
T ss_pred CEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEE
Confidence 7899999999999999 445555544 456788999888 7776655 567899999943 33333332 3345544
Q ss_pred EEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccC
Q psy6442 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIE 207 (231)
Q Consensus 128 ~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~ 207 (231)
.+ ++++. +++++.++.|++||+++++.+..+.+|..+|.+++|+|++ .|++++.|+.|++||+.+++....++...
T Consensus 191 ~~--~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 266 (313)
T 3odt_A 191 AV--VDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA 266 (313)
T ss_dssp EE--EETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS
T ss_pred EE--cCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC
Confidence 44 66666 8899999999999999999999999999999999999999 68999999999999999999888776543
Q ss_pred CcccCCCCCCcccc
Q psy6442 208 GGLNNSLGLDSSGH 221 (231)
Q Consensus 208 ~~~~~~~~~~~~~~ 221 (231)
. ....+.+.++++
T Consensus 267 ~-~i~~~~~~~~~~ 279 (313)
T 3odt_A 267 I-SIWSVDCMSNGD 279 (313)
T ss_dssp S-CEEEEEECTTSC
T ss_pred c-eEEEEEEccCCC
Confidence 2 334455555554
No 51
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=1.7e-26 Score=195.66 Aligned_cols=184 Identities=17% Similarity=0.154 Sum_probs=143.0
Q ss_pred CCcCCCceeeeccCCCe--EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE
Q psy6442 1 MCVDGKPMLRQGDTGDW--IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL 78 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~--i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~ 78 (231)
|+.||+|+||+..+++. +..+.+|.+.|.+++|+|. ++.+|+|+|.|++|++||++.+......
T Consensus 138 Gs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~--------------~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 203 (435)
T 4e54_B 138 GSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL--------------NTNQFYASSMEGTTRLQDFKGNILRVFA 203 (435)
T ss_dssp EETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS--------------CTTEEEEECSSSCEEEEETTSCEEEEEE
T ss_pred EeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC--------------CCCEEEEEeCCCEEEEeeccCCceeEEe
Confidence 46899999999987764 4556799999999999984 2557899999999999999875443332
Q ss_pred Ee---CCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeec-cceeEEEEEEecCCCC-EEEEecCCCeEEEEeC
Q psy6442 79 EF---GAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKV-PAQVHSASLLLNSERP-IFVCGGEDLKMYKFDY 152 (231)
Q Consensus 79 ~~---~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~g~~d~~i~~~d~ 152 (231)
.. ...+.+++++|++..++++ .++.|++||..... +..+.. ...+..+.+ +|++. ++++++.|+.|++||+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~~~~~~h~~~v~~v~~--~p~~~~~~~s~s~d~~v~iwd~ 280 (435)
T 4e54_B 204 SSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVAL--NPCCDWFLATASVDQTVKIWDL 280 (435)
T ss_dssp CCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-CCCSBCCSSCEEEEEE--CTTCSSEEEEEETTSBCCEEET
T ss_pred ccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-eEEEecccceEEeeee--cCCCceEEEEecCcceeeEEec
Confidence 22 2346789999999988765 57899999986543 333332 334555444 77665 7889999999999999
Q ss_pred CCcceee---eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeee
Q psy6442 153 STGAEIE---SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYG 201 (231)
Q Consensus 153 ~~~~~~~---~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~ 201 (231)
++..... ...+|..+|++++|+|++.+|++++.|++|+|||+.+++...
T Consensus 281 ~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~ 332 (435)
T 4e54_B 281 RQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL 332 (435)
T ss_dssp TTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEE
T ss_pred ccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccce
Confidence 8765433 346799999999999999999999999999999999877543
No 52
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.95 E-value=4.9e-26 Score=189.02 Aligned_cols=217 Identities=13% Similarity=0.133 Sum_probs=166.8
Q ss_pred CCcCCCceeeeccCCCeEeeee--cccccEEEEEECC-CCceeEecccccccc---------------------------
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFE--GHKGCVWGVDINK-DASKAASGAADFQAK--------------------------- 50 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~--gH~~~V~~~~~~~-~~~~~~s~~~d~~~~--------------------------- 50 (231)
++.||+|++|+..+++....+. +|.+.|.+++|+| +++.+++++.|..+.
T Consensus 92 ~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 171 (383)
T 3ei3_B 92 GSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDV 171 (383)
T ss_dssp EEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEE
T ss_pred EcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEE
Confidence 3679999999999998887775 7999999999999 678999887764321
Q ss_pred --CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCC-EEEE-EcCCeEEEEECCC----cceEEeeecc
Q psy6442 51 --NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGT-TITV-THGSCVTFLDANS----LELIKEHKVP 121 (231)
Q Consensus 51 --~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~-~~~~~i~~~d~~~----~~~~~~~~~~ 121 (231)
++..|++++.|++|++||++ ++.+..+. +...+.+++|+|++. .++. +.++.+++||... ...+......
T Consensus 172 ~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 250 (383)
T 3ei3_B 172 SVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHE 250 (383)
T ss_dssp ETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECS
T ss_pred CCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCC
Confidence 57889999999999999994 55555554 567899999999998 5554 5678999999887 4455555444
Q ss_pred ceeEEEEEEecC-CCCEEEEecCCCeEEEEeCCCcceeeeccCCC-----------------CCeeEEEEcCCCCEEEEe
Q psy6442 122 AQVHSASLLLNS-ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHF-----------------GPIHCVKFSPDGELYASG 183 (231)
Q Consensus 122 ~~~~~~~~~~~~-~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~-----------------~~V~~v~~spd~~~laS~ 183 (231)
..+..+.+ +| ++..+++++.|+.|++||+.++..+..+.+|. ..+..++|+|++++ ++
T Consensus 251 ~~v~~~~~--s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~ 326 (383)
T 3ei3_B 251 KPVNAAYF--NPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LL 326 (383)
T ss_dssp SCEEEEEE--CTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CT
T ss_pred CceEEEEE--cCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--cc
Confidence 55655554 88 89999999999999999999887766665543 23444677777766 78
Q ss_pred eCCCcEEEEeCCCCCeeeeeeccC-CcccCCCCCCccccc
Q psy6442 184 SEDGTLRLWQTNVGKTYGLWKCIE-GGLNNSLGLDSSGHL 222 (231)
Q Consensus 184 s~d~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 222 (231)
+.|++|+|||+.+++....++... ....+.++|.++|.+
T Consensus 327 s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~ 366 (383)
T 3ei3_B 327 NDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDV 366 (383)
T ss_dssp TCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSE
T ss_pred CCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccE
Confidence 899999999999999888877532 333333456666554
No 53
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.95 E-value=3.4e-25 Score=179.62 Aligned_cols=190 Identities=19% Similarity=0.208 Sum_probs=162.0
Q ss_pred CcCCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEecccccccc---------------------------CC
Q psy6442 2 CVDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------NN 52 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~ 52 (231)
+.||++++|+..+++ ....+.+|.+.|.++.|+|+++.+++++.+..+. ++
T Consensus 116 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 195 (337)
T 1gxr_A 116 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG 195 (337)
T ss_dssp ESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred cCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC
Confidence 578999999998887 6778899999999999999999999887653221 67
Q ss_pred CEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccceeEEEEEEe
Q psy6442 53 TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQVHSASLLL 131 (231)
Q Consensus 53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 131 (231)
..|++++.|++|++||+++++.+..+.+...+.+++++|++..++++ .++.+.+||....+..........+..+.+
T Consensus 196 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~-- 273 (337)
T 1gxr_A 196 TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF-- 273 (337)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEE--
T ss_pred CEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEE--
Confidence 79999999999999999999988888888889999999999987765 578999999988776544444445555444
Q ss_pred cCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT 194 (231)
Q Consensus 132 ~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~ 194 (231)
++++.++++++.|+.|++||+.+++.+... .|..+|.+++|+|++++|++++.|+.|++|++
T Consensus 274 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 889999999999999999999988877544 48899999999999999999999999999996
No 54
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.95 E-value=7.4e-26 Score=186.30 Aligned_cols=201 Identities=16% Similarity=0.174 Sum_probs=161.4
Q ss_pred CcCCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE
Q psy6442 2 CVDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE 79 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~ 79 (231)
+.||+|++|+..+++ .+.++.+|.+.|.+++|+|++ ..|++++.|++|++||+.+++......
T Consensus 27 ~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------------~~l~~~~~dg~i~vwd~~~~~~~~~~~ 91 (372)
T 1k8k_C 27 PNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS---------------NRIVTCGTDRNAYVWTLKGRTWKPTLV 91 (372)
T ss_dssp CSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT---------------TEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred eCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC---------------CEEEEEcCCCeEEEEECCCCeeeeeEE
Confidence 579999999999888 899999999999999999974 458899999999999998887554443
Q ss_pred ---eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcce---EEeeec--cceeEEEEEEecCCCCEEEEecCCCeEEEE
Q psy6442 80 ---FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLEL---IKEHKV--PAQVHSASLLLNSERPIFVCGGEDLKMYKF 150 (231)
Q Consensus 80 ---~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~ 150 (231)
+...+.+++|+|++..++++ .++.+.+||...... ...... ...+..+ .+++++..+++++.|+.|++|
T Consensus 92 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~l~~~~~dg~i~~~ 169 (372)
T 1k8k_C 92 ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSL--DWHPNSVLLAAGSCDFKCRIF 169 (372)
T ss_dssp CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEE--EECTTSSEEEEEETTSCEEEE
T ss_pred eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEE--EEcCCCCEEEEEcCCCCEEEE
Confidence 45678999999999887765 578999999876553 222222 2344444 448899999999999999999
Q ss_pred eC------------------CCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccC
Q psy6442 151 DY------------------STGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNN 212 (231)
Q Consensus 151 d~------------------~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 212 (231)
|+ ..++.+..+.+|..+|.+++|+|++++|++++.|+.|++||+++++....++.... ...
T Consensus 170 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~v~ 248 (372)
T 1k8k_C 170 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL-PLL 248 (372)
T ss_dssp ECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC-CEE
T ss_pred EcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCC-CeE
Confidence 95 35678888989999999999999999999999999999999999998877765332 223
Q ss_pred CCCCCccc
Q psy6442 213 SLGLDSSG 220 (231)
Q Consensus 213 ~~~~~~~~ 220 (231)
.+.+.+++
T Consensus 249 ~~~~~~~~ 256 (372)
T 1k8k_C 249 AVTFITES 256 (372)
T ss_dssp EEEEEETT
T ss_pred EEEEecCC
Confidence 34444444
No 55
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.95 E-value=1.1e-26 Score=190.58 Aligned_cols=202 Identities=16% Similarity=0.202 Sum_probs=160.5
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECC-CCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE-
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK-DASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL- 78 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~-~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~- 78 (231)
++.||+|++|+..+++.+..+.+|.+.|.++.|+| + +..|++++.|++|++||+.+++....+
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~---------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 155 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRD---------------PNLLLSVSKDHALRLWNIQTDTLVAIFG 155 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSC---------------TTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCC---------------CCEEEEEeCCCeEEEEEeecCeEEEEec
Confidence 36799999999999999999999999999999999 5 456899999999999999999887776
Q ss_pred ---EeCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeee-----------------------------ccceeE
Q psy6442 79 ---EFGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHK-----------------------------VPAQVH 125 (231)
Q Consensus 79 ---~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-----------------------------~~~~~~ 125 (231)
.+...+.+++|+|++..++++ .++.+++||....+...... ....+.
T Consensus 156 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 156 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred ccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 356789999999999877664 57899999998765432221 223344
Q ss_pred EEEEEecCCCCEEEEecCCCeEEEEeCCCcce--------------eeeccCCCCCeeEEEEcCC--CCEEEEeeCCCcE
Q psy6442 126 SASLLLNSERPIFVCGGEDLKMYKFDYSTGAE--------------IESFKGHFGPIHCVKFSPD--GELYASGSEDGTL 189 (231)
Q Consensus 126 ~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~--------------~~~~~~h~~~V~~v~~spd--~~~laS~s~d~~v 189 (231)
.+.+ + +..+++++.|+.|++||+.++.. +..+.+|..+|.+++|+|+ +++|++++.|+.|
T Consensus 236 ~~~~--~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i 311 (366)
T 3k26_A 236 CVRW--L--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKL 311 (366)
T ss_dssp EEEE--E--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCE
T ss_pred EEEE--c--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcE
Confidence 4444 3 66899999999999999877643 7778899999999999999 9999999999999
Q ss_pred EEEeCCCCCeee----eeeccC-CcccCCCCCCcccc
Q psy6442 190 RLWQTNVGKTYG----LWKCIE-GGLNNSLGLDSSGH 221 (231)
Q Consensus 190 ~iwd~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~ 221 (231)
+|||+.+++... .+.... ......+++.+++.
T Consensus 312 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 348 (366)
T 3k26_A 312 YVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS 348 (366)
T ss_dssp EEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS
T ss_pred EEEECCCCCCccccceEEcccccCCceEEEEeCCCCC
Confidence 999999987433 455431 23344455555544
No 56
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=1.2e-25 Score=184.21 Aligned_cols=206 Identities=15% Similarity=0.250 Sum_probs=159.3
Q ss_pred CCcCCCceeeeccC-CCeE-eeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE
Q psy6442 1 MCVDGKPMLRQGDT-GDWI-GTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL 78 (231)
Q Consensus 1 ~~~d~~~~~~~~~~-g~~i-~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~ 78 (231)
++.||+|++|+..+ ++.+ ..+.+|.+.|.++.|+|++ ..|++++.|++|++||+.+++.....
T Consensus 60 ~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------------~~l~s~~~dg~v~iwd~~~~~~~~~~ 124 (368)
T 3mmy_A 60 GSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG---------------SKVFTASCDKTAKMWDLSSNQAIQIA 124 (368)
T ss_dssp EETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS---------------SEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC---------------CEEEEEcCCCcEEEEEcCCCCceeec
Confidence 36799999999987 6665 7899999999999999974 45889999999999999999888877
Q ss_pred EeCCcceeEEE--ccCCCEEEE-EcCCeEEEEECCCcceEEeeeccce--------------------------------
Q psy6442 79 EFGAVPNSLEI--SRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQ-------------------------------- 123 (231)
Q Consensus 79 ~~~~~~~~v~~--~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~-------------------------------- 123 (231)
.+...+.+++| +|++..+++ +.++.+++||..+.+.+..+..+..
T Consensus 125 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 204 (368)
T 3mmy_A 125 QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEF 204 (368)
T ss_dssp ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEE
T ss_pred cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchh
Confidence 78889999999 888876655 5688999999887665544432211
Q ss_pred ----------eEEEEEEecCC--CCEEEEecCCCeEEEEeCCCc---ceeeeccCCCC------------CeeEEEEcCC
Q psy6442 124 ----------VHSASLLLNSE--RPIFVCGGEDLKMYKFDYSTG---AEIESFKGHFG------------PIHCVKFSPD 176 (231)
Q Consensus 124 ----------~~~~~~~~~~~--~~~~~~g~~d~~i~~~d~~~~---~~~~~~~~h~~------------~V~~v~~spd 176 (231)
.....+...+. ...+++++.|+.|++|++... ..+..+.+|.. +|++++|+|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 284 (368)
T 3mmy_A 205 RRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPV 284 (368)
T ss_dssp EECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTT
T ss_pred hhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecC
Confidence 11122211211 122889999999999999876 55667777776 7999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442 177 GELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL 222 (231)
Q Consensus 177 ~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (231)
+++|++++.|+.|+|||+.+++....++... .....++|.++|..
T Consensus 285 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~ 329 (368)
T 3mmy_A 285 HGTLATVGSDGRFSFWDKDARTKLKTSEQLD-QPISACCFNHNGNI 329 (368)
T ss_dssp TCCEEEEETTSCEEEEETTTTEEEEECCCCS-SCEEEEEECTTSSC
T ss_pred CCEEEEEccCCeEEEEECCCCcEEEEecCCC-CCceEEEECCCCCe
Confidence 9999999999999999999998887776532 33445566665544
No 57
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.95 E-value=2.2e-25 Score=181.34 Aligned_cols=193 Identities=24% Similarity=0.312 Sum_probs=154.7
Q ss_pred cCCCeEeeeecccccEEEEEECCC-CceeEecccccccc--------------------------------CCCEEEEEe
Q psy6442 13 DTGDWIGTFEGHKGCVWGVDINKD-ASKAASGAADFQAK--------------------------------NNTRLISCA 59 (231)
Q Consensus 13 ~~g~~i~~l~gH~~~V~~~~~~~~-~~~~~s~~~d~~~~--------------------------------~~~~l~s~s 59 (231)
++.++..+|+||++.|++++|+|+ +++++|++.|..++ ++..|++++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 455678899999999999999997 57899988764321 567899999
Q ss_pred CCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeee-c-cceeEEEEEEecCCC
Q psy6442 60 EDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHK-V-PAQVHSASLLLNSER 135 (231)
Q Consensus 60 ~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 135 (231)
.|+.|++|+............ ...+..+.+++++..++. +.++.+.+||........... . ...+....+...+..
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 185 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 185 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence 999999999988776655543 345677788888876654 567899999987654433221 1 234555555555667
Q ss_pred CEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442 136 PIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 136 ~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~ 205 (231)
.++++++.|+.|++||..+++.+..+.+|.++|++++|+|++++|++++.|++|+|||+++++.....+.
T Consensus 186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 255 (340)
T 4aow_A 186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255 (340)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred cEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC
Confidence 7889999999999999999999999999999999999999999999999999999999999988766654
No 58
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.95 E-value=3.3e-26 Score=187.22 Aligned_cols=196 Identities=16% Similarity=0.187 Sum_probs=158.2
Q ss_pred CCcCCCceeeeccCCC-eEeeeecccccEEEEE------ECCCCceeEeccccccc------------------------
Q psy6442 1 MCVDGKPMLRQGDTGD-WIGTFEGHKGCVWGVD------INKDASKAASGAADFQA------------------------ 49 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~-~i~~l~gH~~~V~~~~------~~~~~~~~~s~~~d~~~------------------------ 49 (231)
++.||+|++|+..+++ .+..+.+|.+.|.+++ |+|+++.+++++.|..+
T Consensus 86 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 86 GDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR 165 (357)
T ss_dssp EETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred ecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence 3679999999999998 8999999999999995 47889999988664211
Q ss_pred ------------cCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEcc---CCCEEEEE-cCCeEEEEECCCcc
Q psy6442 50 ------------KNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISR---DGTTITVT-HGSCVTFLDANSLE 113 (231)
Q Consensus 50 ------------~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~-~~~~i~~~d~~~~~ 113 (231)
.++..|++++.|++|++||+++++......+...+.+++|+| ++..++++ .++.+.+||.....
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence 256789999999999999999998877777788999999999 88876654 57899999987655
Q ss_pred eEEeee------ccceeEEEEEEecCCCC-EEEEecCCCeEEEEeCCCc-------------------ceeeeccCCCCC
Q psy6442 114 LIKEHK------VPAQVHSASLLLNSERP-IFVCGGEDLKMYKFDYSTG-------------------AEIESFKGHFGP 167 (231)
Q Consensus 114 ~~~~~~------~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~~~d~~~~-------------------~~~~~~~~h~~~ 167 (231)
...... ....+..+.+ +|++. ++++++.|+.|++||+..+ ..+..+.+|..+
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (357)
T 3i2n_A 246 PTKGFASVSEKAHKSTVWQVRH--LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP 323 (357)
T ss_dssp TTTEEEEEEEECCSSCEEEEEE--ETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSC
T ss_pred cccceeeeccCCCcCCEEEEEE--CCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCC
Confidence 433322 2234554444 78887 8999999999999998753 356778899999
Q ss_pred eeEEEEcCCCCEEE-EeeCCCcEEEEeCCCCC
Q psy6442 168 IHCVKFSPDGELYA-SGSEDGTLRLWQTNVGK 198 (231)
Q Consensus 168 V~~v~~spd~~~la-S~s~d~~v~iwd~~~~~ 198 (231)
|++++|+|++++|+ |++.|+.|+|||+.+.+
T Consensus 324 v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 324 ISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred eeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 99999999999888 89999999999998764
No 59
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.95 E-value=3.1e-25 Score=188.58 Aligned_cols=196 Identities=17% Similarity=0.301 Sum_probs=158.2
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-----------------------------C
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-----------------------------N 51 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-----------------------------~ 51 (231)
++.||+|++|+..+++.+.++.+|.+.|+++.|++++ .+++++.|..+. +
T Consensus 138 gs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 216 (464)
T 3v7d_B 138 GADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216 (464)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSS
T ss_pred EcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCC
Confidence 4689999999999999999999999999999999988 788887764321 4
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCceEE-----------------------EE-eCCcceeEEEccCCCEEEE-EcCCeEEE
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAEVQK-----------------------LE-FGAVPNSLEISRDGTTITV-THGSCVTF 106 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~~~~-----------------------~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~ 106 (231)
+..|++++.|++|++||+.++..... .. +...+. ++++++..+++ +.++.+++
T Consensus 217 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~~d~~i~v 294 (464)
T 3v7d_B 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIV 294 (464)
T ss_dssp CEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEE--EEEEETTEEEEEETTSCEEE
T ss_pred CCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEE--EEcCCCCEEEEEeCCCeEEE
Confidence 57899999999999999987754321 11 122333 34677776665 46889999
Q ss_pred EECCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeC
Q psy6442 107 LDANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSE 185 (231)
Q Consensus 107 ~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~ 185 (231)
||..+.+.+..+..+ ..+..+. +++++..+++|+.|+.|++||+.+++.+.++.+|..+|.+++|+ +.+|++++.
T Consensus 295 wd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~ 370 (464)
T 3v7d_B 295 WDVAQMKCLYILSGHTDRIYSTI--YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAA 370 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEE--EETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEET
T ss_pred EECCCCcEEEEecCCCCCEEEEE--EcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeC
Confidence 999988887776543 3455444 48899999999999999999999999999999999999999998 479999999
Q ss_pred CCcEEEEeCCCCCeeeee
Q psy6442 186 DGTLRLWQTNVGKTYGLW 203 (231)
Q Consensus 186 d~~v~iwd~~~~~~~~~~ 203 (231)
|++|++||+.+++.....
T Consensus 371 dg~v~vwd~~~~~~~~~~ 388 (464)
T 3v7d_B 371 DGSIRGWDANDYSRKFSY 388 (464)
T ss_dssp TSEEEEEETTTCCEEEEE
T ss_pred CCcEEEEECCCCceeeee
Confidence 999999999988755444
No 60
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.9e-26 Score=197.36 Aligned_cols=211 Identities=13% Similarity=0.081 Sum_probs=154.8
Q ss_pred CCcCCCceeeeccCCCeE----eeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCce-
Q psy6442 1 MCVDGKPMLRQGDTGDWI----GTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEV- 75 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i----~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~- 75 (231)
++.|++|+||+..++++. .++.+|.+.|++++|+|++.. ..++..|+|++.|++|+|||+..+...
T Consensus 179 ~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~---------~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 179 EKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHA---------PHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ---CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCC---------SSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred CCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCC---------CCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 467999999999888753 457788999999999997421 012568999999999999999876432
Q ss_pred ----------EEEE-eCCcceeEEEccCCCEEEEEcCCeEEEEECCCcce-EEeeec-cceeEEEEEEecCCC-CEEEEe
Q psy6442 76 ----------QKLE-FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL-IKEHKV-PAQVHSASLLLNSER-PIFVCG 141 (231)
Q Consensus 76 ----------~~~~-~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~~~~-~~~~~g 141 (231)
..+. +...+.+++|++++..+..+.++.|++||..+... ...... ...+..+.+.+++++ .+++++
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~ 329 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV 329 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence 1222 34678999999876544456789999999986532 223333 235655543457776 889999
Q ss_pred cCCCeEEEEeCCCcceeeeccCCCC--CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcc
Q psy6442 142 GEDLKMYKFDYSTGAEIESFKGHFG--PIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSS 219 (231)
Q Consensus 142 ~~d~~i~~~d~~~~~~~~~~~~h~~--~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (231)
+.|++|++||+++++.+.++.+|.. .|.+++|+|+++.|++++.|++|+|||+++++....+....+ ....|+|.++
T Consensus 330 S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~-~V~sva~Sp~ 408 (524)
T 2j04_B 330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET-TITAIGVSRL 408 (524)
T ss_dssp ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS-CEEEEECCSS
T ss_pred ccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC-ceEEEEeCCC
Confidence 9999999999998887777777764 589999999999999999999999999999886555554332 2344555555
Q ss_pred cc
Q psy6442 220 GH 221 (231)
Q Consensus 220 ~~ 221 (231)
|.
T Consensus 409 g~ 410 (524)
T 2j04_B 409 HP 410 (524)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 61
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.7e-25 Score=186.73 Aligned_cols=216 Identities=16% Similarity=0.175 Sum_probs=170.0
Q ss_pred CCcCCCceeeec----cCCC------eEeeeec----------ccccEEEEEECCCCceeEeccccccc-----------
Q psy6442 1 MCVDGKPMLRQG----DTGD------WIGTFEG----------HKGCVWGVDINKDASKAASGAADFQA----------- 49 (231)
Q Consensus 1 ~~~d~~~~~~~~----~~g~------~i~~l~g----------H~~~V~~~~~~~~~~~~~s~~~d~~~----------- 49 (231)
++.||+|++|+. .+|+ ....+.. |.+.|.+++|+|+++.+++++.+..+
T Consensus 64 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~ 143 (425)
T 1r5m_A 64 GEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLN 143 (425)
T ss_dssp EETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE
T ss_pred ecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee
Confidence 367899999999 8888 4555554 78899999999999999998776422
Q ss_pred ---------------cCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC-c---------------ceeEEEccCCCEEEE
Q psy6442 50 ---------------KNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA-V---------------PNSLEISRDGTTITV 98 (231)
Q Consensus 50 ---------------~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~-~---------------~~~v~~~~~~~~~~~ 98 (231)
.++..|++++.|++|++||+.+++.+..+.... . +.+++++|++..++.
T Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (425)
T 1r5m_A 144 VLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIP 223 (425)
T ss_dssp EECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEE
T ss_pred eccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEE
Confidence 167889999999999999999988877765433 2 889999999877777
Q ss_pred EcCCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCC
Q psy6442 99 THGSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDG 177 (231)
Q Consensus 99 ~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~ 177 (231)
+.++.+.+||......+..+..+ ..+..+.+ ++++..+++++.|+.|++||+.+++.+..+.+|..+|.+++|+|++
T Consensus 224 ~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 301 (425)
T 1r5m_A 224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEF--NDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD 301 (425)
T ss_dssp CGGGCEEEEETTCSSCSEEECCCSSCEEEEEE--ETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT
T ss_pred cCCCeEEEEEcCCCceeeeeccCCCceEEEEE--CCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC
Confidence 77899999999887766655432 34554444 7889999999999999999999998889999999999999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccc
Q psy6442 178 ELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSG 220 (231)
Q Consensus 178 ~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (231)
++++++.|+.|++||+.+++....+..... ....+.+.+++
T Consensus 302 -~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~s~~~ 342 (425)
T 1r5m_A 302 -KVISCSMDGSVRLWSLKQNTLLALSIVDGV-PIFAGRISQDG 342 (425)
T ss_dssp -EEEEEETTSEEEEEETTTTEEEEEEECTTC-CEEEEEECTTS
T ss_pred -EEEEEeCCCcEEEEECCCCcEeEecccCCc-cEEEEEEcCCC
Confidence 999999999999999999988877764322 23334444444
No 62
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.4e-25 Score=187.46 Aligned_cols=215 Identities=12% Similarity=0.139 Sum_probs=169.2
Q ss_pred CcCCCceeeeccCCC---eEeeeecccccEEEEEECCCCceeEecccccccc----------------------------
Q psy6442 2 CVDGKPMLRQGDTGD---WIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------- 50 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~---~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------- 50 (231)
+.|++|++|+..+++ .+..+ .|.+.|.+++|+|+++++++++.|..+.
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~ 120 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK 120 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEE
T ss_pred CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEE
Confidence 689999999998886 44444 5999999999999999999986652211
Q ss_pred ---C-CCEEEEEeCCCCEEEEeCCCCC------ceEEE----EeCCcceeEEEccC-CCEEEEE-cCCeEEEEECCCcce
Q psy6442 51 ---N-NTRLISCAEDKTVRLWDVSASA------EVQKL----EFGAVPNSLEISRD-GTTITVT-HGSCVTFLDANSLEL 114 (231)
Q Consensus 51 ---~-~~~l~s~s~D~ti~iwd~~~~~------~~~~~----~~~~~~~~v~~~~~-~~~~~~~-~~~~i~~~d~~~~~~ 114 (231)
+ +..|++++.|++|++||+.+++ ....+ .+...+.+++|+|+ +..++++ .++.+++||....+.
T Consensus 121 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 200 (416)
T 2pm9_A 121 FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE 200 (416)
T ss_dssp ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence 3 7889999999999999998876 32222 24567899999999 5666554 578999999998887
Q ss_pred EEeeecc-------ceeEEEEEEecCCC-CEEEEecCCC---eEEEEeCCCc-ceeeecc-CCCCCeeEEEEcC-CCCEE
Q psy6442 115 IKEHKVP-------AQVHSASLLLNSER-PIFVCGGEDL---KMYKFDYSTG-AEIESFK-GHFGPIHCVKFSP-DGELY 180 (231)
Q Consensus 115 ~~~~~~~-------~~~~~~~~~~~~~~-~~~~~g~~d~---~i~~~d~~~~-~~~~~~~-~h~~~V~~v~~sp-d~~~l 180 (231)
+..+..+ ..+..+. ++|++ .++++++.++ .|++||++++ ..+..+. +|...|.+++|+| ++++|
T Consensus 201 ~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l 278 (416)
T 2pm9_A 201 VIHLSYTSPNSGIKQQLSVVE--WHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLL 278 (416)
T ss_dssp EEEECCCCCSSCCCCCEEEEE--ECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCE
T ss_pred ceEEeccccccccCCceEEEE--ECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeE
Confidence 7766553 3444444 47776 6899999998 9999999886 5677888 9999999999999 89999
Q ss_pred EEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccc
Q psy6442 181 ASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSG 220 (231)
Q Consensus 181 aS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (231)
++++.|++|+|||+.+++....++...+ ....+++.+++
T Consensus 279 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~ 317 (416)
T 2pm9_A 279 LSSGRDNTVLLWNPESAEQLSQFPARGN-WCFKTKFAPEA 317 (416)
T ss_dssp EEEESSSEEEEECSSSCCEEEEEECSSS-CCCCEEECTTC
T ss_pred EEEeCCCCEEEeeCCCCccceeecCCCC-ceEEEEECCCC
Confidence 9999999999999999998887775433 23444555544
No 63
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2e-25 Score=186.30 Aligned_cols=217 Identities=14% Similarity=0.158 Sum_probs=178.9
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc------------------------------
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK------------------------------ 50 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~------------------------------ 50 (231)
++.||+|++|+ .+++.+..+.+|.+.|.++.|+|+++.+++++.+..+.
T Consensus 126 ~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (425)
T 1r5m_A 126 GVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSG 204 (425)
T ss_dssp EETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------
T ss_pred EeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccC
Confidence 35789999999 78999999999999999999999999999887653211
Q ss_pred -----------CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEe
Q psy6442 51 -----------NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKE 117 (231)
Q Consensus 51 -----------~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~ 117 (231)
++..+++++.|+.|++||+..++.+..+. +...+.+++++|++..++++ .++.+++||....+....
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 284 (425)
T 1r5m_A 205 DGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC 284 (425)
T ss_dssp -CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEE
T ss_pred CcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceE
Confidence 24578999999999999999988877764 45678999999999877665 578999999988777666
Q ss_pred eec-cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442 118 HKV-PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV 196 (231)
Q Consensus 118 ~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~ 196 (231)
+.. ...+..+.+ ++++ .+++++.|+.|++||+.+++.+..+..|..+|.+++|+|++++|++++.|+.|+|||+.+
T Consensus 285 ~~~~~~~i~~~~~--~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 285 FYGHSQSIVSASW--VGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp ECCCSSCEEEEEE--ETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred ecCCCccEEEEEE--CCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 543 334555444 6777 899999999999999999999999999999999999999999999999999999999998
Q ss_pred CC--------------------eeeeeeccCCc-ccCCCCCCcccc
Q psy6442 197 GK--------------------TYGLWKCIEGG-LNNSLGLDSSGH 221 (231)
Q Consensus 197 ~~--------------------~~~~~~~~~~~-~~~~~~~~~~~~ 221 (231)
++ ....++..... ....+.+.+++.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 407 (425)
T 1r5m_A 362 LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN 407 (425)
T ss_dssp HHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS
T ss_pred CccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc
Confidence 87 66666654333 455566666655
No 64
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.94 E-value=1.1e-25 Score=203.32 Aligned_cols=218 Identities=18% Similarity=0.257 Sum_probs=176.4
Q ss_pred CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc---------------------------CCCE
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------NNTR 54 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~~~ 54 (231)
+.||+|++|+..+|+.+.++.+|.+.|.++.|+|+++.+++++.+..+. ++..
T Consensus 32 ~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 111 (814)
T 3mkq_A 32 LYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY 111 (814)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSE
T ss_pred eCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCE
Confidence 5689999999999999999999999999999999999999997764321 6778
Q ss_pred EEEEeCCCCEEEEeCCCC-CceEEEE-eCCcceeEEEcc-CCCEEEE-EcCCeEEEEECCCcceEEeeecc--ceeEEEE
Q psy6442 55 LISCAEDKTVRLWDVSAS-AEVQKLE-FGAVPNSLEISR-DGTTITV-THGSCVTFLDANSLELIKEHKVP--AQVHSAS 128 (231)
Q Consensus 55 l~s~s~D~ti~iwd~~~~-~~~~~~~-~~~~~~~v~~~~-~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~ 128 (231)
|++++.|++|++||+..+ .....+. +...+.+++|+| ++..+++ +.++.+.+||............+ ..+....
T Consensus 112 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~ 191 (814)
T 3mkq_A 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191 (814)
T ss_dssp EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEE
T ss_pred EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEE
Confidence 999999999999999877 4444443 456789999999 6666554 56789999998776655554432 4555555
Q ss_pred EEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCC
Q psy6442 129 LLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEG 208 (231)
Q Consensus 129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~ 208 (231)
+.+.+++..+++++.++.|++||..+++.+..+.+|..+|.+++|+|++++|++++.||.|++||+.+++....++...
T Consensus 192 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~- 270 (814)
T 3mkq_A 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL- 270 (814)
T ss_dssp ECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS-
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC-
Confidence 5333489999999999999999999999999999999999999999999999999999999999999998877665432
Q ss_pred cccCCCCCCccc
Q psy6442 209 GLNNSLGLDSSG 220 (231)
Q Consensus 209 ~~~~~~~~~~~~ 220 (231)
.....+++.++|
T Consensus 271 ~~v~~~~~~~~~ 282 (814)
T 3mkq_A 271 ERSWCIATHPTG 282 (814)
T ss_dssp SSEEEEEECTTC
T ss_pred CcEEEEEEccCC
Confidence 223334444444
No 65
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.3e-26 Score=187.90 Aligned_cols=181 Identities=13% Similarity=0.072 Sum_probs=144.3
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCC---------C
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVS---------A 71 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~---------~ 71 (231)
++.||+|++|+..+|+.+.++. .+.|.++.|+|. +++++.|++|++|+.. +
T Consensus 54 g~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~------------------~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 54 RCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA------------------IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp EEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS------------------EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred ECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc------------------eEEecCCCeEEEEEccCceEEeecCC
Confidence 4689999999999999999887 456666666653 7899999999999665 4
Q ss_pred CCceEEEEe--CCcceeEEEcc--CCCEEE-EEcCCeEEEEECCCcceEEeeecc--ceeEEEEEEecCCCCEEEEecCC
Q psy6442 72 SAEVQKLEF--GAVPNSLEISR--DGTTIT-VTHGSCVTFLDANSLELIKEHKVP--AQVHSASLLLNSERPIFVCGGED 144 (231)
Q Consensus 72 ~~~~~~~~~--~~~~~~v~~~~--~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~d 144 (231)
++.+..... ...+.+++++| ++..++ .+.++.+++||..+.+........ ..+..+. ++|++.++++|+.|
T Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~--~~pdg~~lasg~~d 191 (343)
T 3lrv_A 114 NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGV--LHKDSLLLALYSPD 191 (343)
T ss_dssp CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEE--ECTTSCEEEEECTT
T ss_pred cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEE--ECCCCCEEEEEcCC
Confidence 444444443 35789999999 888776 456899999999988776554332 2344444 48999999999999
Q ss_pred CeEEEEeCCCccee-eeccC-CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442 145 LKMYKFDYSTGAEI-ESFKG-HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK 204 (231)
Q Consensus 145 ~~i~~~d~~~~~~~-~~~~~-h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~ 204 (231)
+.|++||+++++.+ ..+.+ |.++|++++|+|++.+|++++. ++|+|||+++++....++
T Consensus 192 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~ 252 (343)
T 3lrv_A 192 GILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYP 252 (343)
T ss_dssp SCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSC
T ss_pred CEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeec
Confidence 99999999998877 78888 9999999999999999999994 599999999987654433
No 66
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.6e-25 Score=184.31 Aligned_cols=183 Identities=26% Similarity=0.345 Sum_probs=147.8
Q ss_pred CCcCCCceeeecc--CCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC--ceE
Q psy6442 1 MCVDGKPMLRQGD--TGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA--EVQ 76 (231)
Q Consensus 1 ~~~d~~~~~~~~~--~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~--~~~ 76 (231)
++.||+|++|+.. +++.+..+.+|.+.|.+++|+++. ++..|++++.|++|++||+.+++ ...
T Consensus 29 ~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 95 (379)
T 3jrp_A 29 CSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-------------FGTILASCSYDGKVLIWKEENGRWSQIA 95 (379)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-------------GCSEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred EECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC-------------CCCEEEEeccCCEEEEEEcCCCceeEee
Confidence 3579999999997 778889999999999999998751 24568999999999999999886 333
Q ss_pred EEE-eCCcceeEEEccC--CCEEEE-EcCCeEEEEECCCcceEEe--e-eccceeEEEEEEecC-------------CCC
Q psy6442 77 KLE-FGAVPNSLEISRD--GTTITV-THGSCVTFLDANSLELIKE--H-KVPAQVHSASLLLNS-------------ERP 136 (231)
Q Consensus 77 ~~~-~~~~~~~v~~~~~--~~~~~~-~~~~~i~~~d~~~~~~~~~--~-~~~~~~~~~~~~~~~-------------~~~ 136 (231)
.+. +...+.+++|+|+ +..+++ +.++.+++||......... . .....+..+.+ +| ++.
T Consensus 96 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~ 173 (379)
T 3jrp_A 96 VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW--APATIEEDGEHNGTKESR 173 (379)
T ss_dssp EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEE--CCCC----------CTTC
T ss_pred eecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEE--cCccccccccccCCCCCC
Confidence 333 4568999999999 776655 5688999999887643222 2 22334555544 66 688
Q ss_pred EEEEecCCCeEEEEeCCCcc----eeeeccCCCCCeeEEEEcCC---CCEEEEeeCCCcEEEEeCCCCC
Q psy6442 137 IFVCGGEDLKMYKFDYSTGA----EIESFKGHFGPIHCVKFSPD---GELYASGSEDGTLRLWQTNVGK 198 (231)
Q Consensus 137 ~~~~g~~d~~i~~~d~~~~~----~~~~~~~h~~~V~~v~~spd---~~~laS~s~d~~v~iwd~~~~~ 198 (231)
.+++++.|+.|++||++++. .+..+.+|..+|.+++|+|+ +.+|++++.|+.|+|||+.+++
T Consensus 174 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 174 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 99999999999999997654 45678899999999999999 8999999999999999998874
No 67
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=3e-25 Score=185.71 Aligned_cols=182 Identities=15% Similarity=0.218 Sum_probs=151.1
Q ss_pred CCcCCCceeeeccCC----CeEeeeecccccEEEEEECC-CCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC---
Q psy6442 1 MCVDGKPMLRQGDTG----DWIGTFEGHKGCVWGVDINK-DASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS--- 72 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g----~~i~~l~gH~~~V~~~~~~~-~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~--- 72 (231)
++.||+|++|+.... +.+..+.+|.+.|.+++|+| + +..|++++.|++|++||+.++
T Consensus 53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~---------------~~~l~s~s~dg~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHN---------------DNVIASGSEDCTVMVWEIPDGGLV 117 (402)
T ss_dssp CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTC---------------TTEEEEEETTSEEEEEECCTTCCS
T ss_pred EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCC---------------CCEEEEEeCCCeEEEEEccCCCCc
Confidence 467999999998543 34667889999999999999 5 456899999999999999887
Q ss_pred ----CceEEEE-eCCcceeEEEccCC-CEEEE-EcCCeEEEEECCCcceEEeee--c-cceeEEEEEEecCCCCEEEEec
Q psy6442 73 ----AEVQKLE-FGAVPNSLEISRDG-TTITV-THGSCVTFLDANSLELIKEHK--V-PAQVHSASLLLNSERPIFVCGG 142 (231)
Q Consensus 73 ----~~~~~~~-~~~~~~~v~~~~~~-~~~~~-~~~~~i~~~d~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~g~ 142 (231)
+.+..+. +...+.+++|+|++ ..++. +.++.+++||..+.+.+..+. . ...+..+.+ ++++..+++++
T Consensus 118 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~ 195 (402)
T 2aq5_A 118 LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDW--SRDGALICTSC 195 (402)
T ss_dssp SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEE--CTTSSCEEEEE
T ss_pred cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEE--CCCCCEEEEEe
Confidence 4455554 56789999999998 45544 568899999999888777662 2 334554444 88999999999
Q ss_pred CCCeEEEEeCCCcceeeec-cCCCCC-eeEEEEcCCCCEEEEe---eCCCcEEEEeCCCCCe
Q psy6442 143 EDLKMYKFDYSTGAEIESF-KGHFGP-IHCVKFSPDGELYASG---SEDGTLRLWQTNVGKT 199 (231)
Q Consensus 143 ~d~~i~~~d~~~~~~~~~~-~~h~~~-V~~v~~spd~~~laS~---s~d~~v~iwd~~~~~~ 199 (231)
.|+.|++||+++++.+..+ .+|.+. +.+++|+|++++|+++ +.|+.|+|||+++++.
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE 257 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC
Confidence 9999999999999988888 788876 8999999999999999 7999999999988764
No 68
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.3e-24 Score=178.15 Aligned_cols=195 Identities=21% Similarity=0.301 Sum_probs=167.5
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccc-----cc---------------------------
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD-----FQ--------------------------- 48 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d-----~~--------------------------- 48 (231)
++.||+|++|+..+++.+..+. |...|.++.|+|+++.++.+..+ ..
T Consensus 92 ~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
T 3zwl_B 92 GSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII 170 (369)
T ss_dssp EETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc
Confidence 3679999999999999999988 89999999999999999887654 11
Q ss_pred -------------ccCCCEEEEEeCCCCEEEEeCCC-CCceEEEE-eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCc
Q psy6442 49 -------------AKNNTRLISCAEDKTVRLWDVSA-SAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSL 112 (231)
Q Consensus 49 -------------~~~~~~l~s~s~D~ti~iwd~~~-~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~ 112 (231)
..++..|++++.|++|++||+.+ ++....+. +...+.+++|+|++..++++ .++.+.+||..+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 171 THEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp CCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred CCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 02467899999999999999998 56666665 45688999999999987664 5789999999998
Q ss_pred ceEEeeeccceeEEEEEEecCCCCEEEEecCCC--------------eEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC
Q psy6442 113 ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDL--------------KMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE 178 (231)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--------------~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~ 178 (231)
+.+..+..+..+..+.+ ++++..+++++.++ .+++||..+++.+..+.+|..+|.+++|+|+++
T Consensus 251 ~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 328 (369)
T 3zwl_B 251 QVLKKYETDCPLNTAVI--TPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGT 328 (369)
T ss_dssp CEEEEEECSSCEEEEEE--CSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred ceeeeecCCCCceeEEe--cCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCC
Confidence 88887776666665554 88999999998887 899999999999999999999999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCC
Q psy6442 179 LYASGSEDGTLRLWQTNVGK 198 (231)
Q Consensus 179 ~laS~s~d~~v~iwd~~~~~ 198 (231)
+|++++.|+.|+||++..+.
T Consensus 329 ~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 329 SYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEEEETTSEEEEEEECHHH
T ss_pred EEEEEcCCCeEEEEECcccc
Confidence 99999999999999997764
No 69
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.94 E-value=4.4e-25 Score=177.94 Aligned_cols=182 Identities=15% Similarity=0.167 Sum_probs=139.5
Q ss_pred CCcCCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc--eE
Q psy6442 1 MCVDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE--VQ 76 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~--~~ 76 (231)
++.|++|++|+..+++ .+.++.+|.+.|.+++|+|+. .+..|++++.|++|++||++.+.. ..
T Consensus 73 ~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~-------------~g~~l~s~s~d~~v~~wd~~~~~~~~~~ 139 (297)
T 2pm7_B 73 CSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHE-------------YGPMLLVASSDGKVSVVEFKENGTTSPI 139 (297)
T ss_dssp EETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGG-------------GCSEEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred EcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCC-------------CCcEEEEEECCCcEEEEEecCCCceeee
Confidence 4689999999998885 577789999999999999862 145689999999999999987632 22
Q ss_pred EE-EeCCcceeEEEccCC-------------CEEEE-EcCCeEEEEECCCcc----eEEeeec-cceeEEEEEEecCC--
Q psy6442 77 KL-EFGAVPNSLEISRDG-------------TTITV-THGSCVTFLDANSLE----LIKEHKV-PAQVHSASLLLNSE-- 134 (231)
Q Consensus 77 ~~-~~~~~~~~v~~~~~~-------------~~~~~-~~~~~i~~~d~~~~~----~~~~~~~-~~~~~~~~~~~~~~-- 134 (231)
.+ .+...+.+++|+|+. +.++. +.++.+++||.+... ....+.. ...+..+.+ +|+
T Consensus 140 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~--sp~~~ 217 (297)
T 2pm7_B 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW--SPTVL 217 (297)
T ss_dssp EEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE--CCCCS
T ss_pred eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEE--CCCCC
Confidence 22 345678999999973 45544 568899999987644 2333332 234555555 776
Q ss_pred -CCEEEEecCCCeEEEEeCCCcc---eeeec--cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442 135 -RPIFVCGGEDLKMYKFDYSTGA---EIESF--KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG 197 (231)
Q Consensus 135 -~~~~~~g~~d~~i~~~d~~~~~---~~~~~--~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~ 197 (231)
+.++++++.|++|++||+.... ....+ .+|...|.+++|+|++++||+++.|++|+||+....
T Consensus 218 ~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 218 LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence 4789999999999999987642 12233 578899999999999999999999999999997643
No 70
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.94 E-value=2.8e-25 Score=184.68 Aligned_cols=186 Identities=16% Similarity=0.287 Sum_probs=159.0
Q ss_pred CCcCCCceeeeccCCCe-----Eeeeecc-----cccEEEEEEC----CCCceeEeccccccccCCCE-EEEEeCCCCEE
Q psy6442 1 MCVDGKPMLRQGDTGDW-----IGTFEGH-----KGCVWGVDIN----KDASKAASGAADFQAKNNTR-LISCAEDKTVR 65 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~-----i~~l~gH-----~~~V~~~~~~----~~~~~~~s~~~d~~~~~~~~-l~s~s~D~ti~ 65 (231)
++.||+|++|+..+++. +..+.+| .+.|.++.|+ |+ +.. |++++.|++|+
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------~~~~l~~~~~dg~i~ 151 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL---------------LSHRLVATDVKGTTY 151 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-------------------CEEEEEEETTSCEE
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCC---------------CceEEEEEeCCCcEE
Confidence 35799999999999987 8999999 5999999999 76 455 89999999999
Q ss_pred EEeCCC------CCceE-----EEE--------eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeec-----
Q psy6442 66 LWDVSA------SAEVQ-----KLE--------FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKV----- 120 (231)
Q Consensus 66 iwd~~~------~~~~~-----~~~--------~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~----- 120 (231)
+||+.. ++.+. .+. +...+.+++|+|++ .++++ .++.+.+||..+.+.+..+..
T Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~ 230 (397)
T 1sq9_A 152 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMI 230 (397)
T ss_dssp EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---
T ss_pred EEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccc
Confidence 999988 66655 554 35678999999999 76665 468999999998888777765
Q ss_pred --cceeEEEEEEecCCCCEEEEecCC---CeEEEEeCCCcceeeeccC-------------CCCCeeEEEEcCCCCEEEE
Q psy6442 121 --PAQVHSASLLLNSERPIFVCGGED---LKMYKFDYSTGAEIESFKG-------------HFGPIHCVKFSPDGELYAS 182 (231)
Q Consensus 121 --~~~~~~~~~~~~~~~~~~~~g~~d---~~i~~~d~~~~~~~~~~~~-------------h~~~V~~v~~spd~~~laS 182 (231)
...+..+.+ ++++.++++++.| +.|++||+.+++.+..+.+ |..+|.+++|+|++++|++
T Consensus 231 ~~~~~i~~i~~--~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 308 (397)
T 1sq9_A 231 NNSNSIRSVKF--SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 308 (397)
T ss_dssp CCCCCEEEEEE--CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred ccCCccceEEE--CCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE
Confidence 445555444 8899999999999 9999999999999999988 9999999999999999999
Q ss_pred eeCCCcEEEEeCCCCCeeeeee
Q psy6442 183 GSEDGTLRLWQTNVGKTYGLWK 204 (231)
Q Consensus 183 ~s~d~~v~iwd~~~~~~~~~~~ 204 (231)
++.|+.|+|||+.+++....++
T Consensus 309 ~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 309 AGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp EETTSEEEEEETTTTEEEEEEE
T ss_pred EeCCCeEEEEEcCCCceeEEEe
Confidence 9999999999999999888887
No 71
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.5e-26 Score=198.26 Aligned_cols=178 Identities=10% Similarity=0.038 Sum_probs=143.2
Q ss_pred CCcCCCceeeeccCCCe-----------EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeC
Q psy6442 1 MCVDGKPMLRQGDTGDW-----------IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDV 69 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~-----------i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~ 69 (231)
++.||+|++|+..+++. ..++.+|.+.|.+++|+++ ..|++|+.||+|++||+
T Consensus 231 ~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~----------------~~lasgs~DgtV~lWD~ 294 (524)
T 2j04_B 231 VSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP----------------TTVVCGFKNGFVAEFDL 294 (524)
T ss_dssp EETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS----------------SEEEEEETTSEEEEEET
T ss_pred EecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC----------------CeEEEEeCCCEEEEEEC
Confidence 36799999999987642 2478899999999999874 25899999999999999
Q ss_pred CCCCc-eEEEE-eCCcceeE--EEccCC-CEEE-EEcCCeEEEEECCCcceEEeeeccc---eeEEEEEEecCCCCEEEE
Q psy6442 70 SASAE-VQKLE-FGAVPNSL--EISRDG-TTIT-VTHGSCVTFLDANSLELIKEHKVPA---QVHSASLLLNSERPIFVC 140 (231)
Q Consensus 70 ~~~~~-~~~~~-~~~~~~~v--~~~~~~-~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 140 (231)
.++.. ...+. +...+.++ +++|++ ..++ ++.|+++++||+++.+.+....... .+..+. ++|++..+++
T Consensus 295 ~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~--fsp~~~~l~s 372 (524)
T 2j04_B 295 TDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVV--YCPQIYSYIY 372 (524)
T ss_dssp TBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEE--EETTTTEEEE
T ss_pred CCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceE--eCCCcCeEEE
Confidence 87643 33343 56778888 567877 6544 4678999999998766544332221 233334 4888889999
Q ss_pred ecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442 141 GGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV 196 (231)
Q Consensus 141 g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~ 196 (231)
++.|.+|++||++++..+.++.+|.++|++|+|||++++|+||+.|++|+|||+..
T Consensus 373 ~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 373 SDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp ECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred eCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 99999999999999988888999999999999999999999999999999999754
No 72
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=189.83 Aligned_cols=191 Identities=16% Similarity=0.229 Sum_probs=149.4
Q ss_pred CCcCCCceeeeccCCC-----------eEeeeeccc------------ccEEEEEECCCCceeEeccccccccCCCEEEE
Q psy6442 1 MCVDGKPMLRQGDTGD-----------WIGTFEGHK------------GCVWGVDINKDASKAASGAADFQAKNNTRLIS 57 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~-----------~i~~l~gH~------------~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s 57 (231)
++.||+|++|+..+++ ++..+.+|. +.|.+++|+|+++ ...|++
T Consensus 46 g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~-------------~~~l~s 112 (447)
T 3dw8_B 46 GDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN-------------AAQFLL 112 (447)
T ss_dssp EETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS-------------SSEEEE
T ss_pred EcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC-------------cceEEE
Confidence 4679999999998887 688899998 8899999999741 256899
Q ss_pred EeCCCCEEEEeCCCCCce---------------------------------------EEE--EeCCcceeEEEccCCCEE
Q psy6442 58 CAEDKTVRLWDVSASAEV---------------------------------------QKL--EFGAVPNSLEISRDGTTI 96 (231)
Q Consensus 58 ~s~D~ti~iwd~~~~~~~---------------------------------------~~~--~~~~~~~~v~~~~~~~~~ 96 (231)
++.|++|++||+..+... ..+ .+...+.+++|+|++..+
T Consensus 113 ~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 192 (447)
T 3dw8_B 113 STNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETY 192 (447)
T ss_dssp EECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEE
T ss_pred eCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEE
Confidence 999999999998764321 111 245678999999999988
Q ss_pred EEEcCCeEEEEECCC-cceEEee--------eccceeEEEEEEecCCC-CEEEEecCCCeEEEEeCCCcce----eeecc
Q psy6442 97 TVTHGSCVTFLDANS-LELIKEH--------KVPAQVHSASLLLNSER-PIFVCGGEDLKMYKFDYSTGAE----IESFK 162 (231)
Q Consensus 97 ~~~~~~~i~~~d~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~g~~d~~i~~~d~~~~~~----~~~~~ 162 (231)
+.+.++.+++||... ...+... .....+..+. ++|++ .++++++.|+.|++||++++.. +..+.
T Consensus 193 ~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 270 (447)
T 3dw8_B 193 LSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAE--FHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE 270 (447)
T ss_dssp EEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEE--ECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEEC
T ss_pred EEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEE--ECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEec
Confidence 887889999999984 3333322 1122344444 48887 8999999999999999998876 67788
Q ss_pred CCCC------------CeeEEEEcCCCCEEEEeeCCCcEEEEeCCC-CCeeeeeeccC
Q psy6442 163 GHFG------------PIHCVKFSPDGELYASGSEDGTLRLWQTNV-GKTYGLWKCIE 207 (231)
Q Consensus 163 ~h~~------------~V~~v~~spd~~~laS~s~d~~v~iwd~~~-~~~~~~~~~~~ 207 (231)
+|.. +|.+++|+|++++|++++. +.|+|||+++ ++....++...
T Consensus 271 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~ 327 (447)
T 3dw8_B 271 EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHE 327 (447)
T ss_dssp CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCG
T ss_pred cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccc
Confidence 8876 8999999999999999999 9999999997 87777776543
No 73
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.94 E-value=5.4e-25 Score=180.00 Aligned_cols=194 Identities=16% Similarity=0.201 Sum_probs=155.8
Q ss_pred cCCCceeeeccCCCeEeee-ecccccEEEEEECCC---CceeEeccccccc-----------------------------
Q psy6442 3 VDGKPMLRQGDTGDWIGTF-EGHKGCVWGVDINKD---ASKAASGAADFQA----------------------------- 49 (231)
Q Consensus 3 ~d~~~~~~~~~~g~~i~~l-~gH~~~V~~~~~~~~---~~~~~s~~~d~~~----------------------------- 49 (231)
.||+|++|+..+++..... .+|.+.|.++.|+|+ ++.+++++.+..+
T Consensus 42 ~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 121 (357)
T 3i2n_A 42 GTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIG 121 (357)
T ss_dssp CCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEES
T ss_pred CCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeecc
Confidence 3899999999999876554 389999999999998 6899988765321
Q ss_pred -----cCCCEEEEEeCCCCEEEEeCCCCC-ceEEEEe-----CCcceeEE----EccCCCEEEEE-cCCeEEEEECCCcc
Q psy6442 50 -----KNNTRLISCAEDKTVRLWDVSASA-EVQKLEF-----GAVPNSLE----ISRDGTTITVT-HGSCVTFLDANSLE 113 (231)
Q Consensus 50 -----~~~~~l~s~s~D~ti~iwd~~~~~-~~~~~~~-----~~~~~~v~----~~~~~~~~~~~-~~~~i~~~d~~~~~ 113 (231)
.++..|++++.|++|++||+..++ ....+.. ...+.+++ ++|++..++++ .++.+++||....+
T Consensus 122 ~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 201 (357)
T 3i2n_A 122 GLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA 201 (357)
T ss_dssp GGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE
T ss_pred ccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc
Confidence 145689999999999999999886 5555543 12567777 67898887765 56899999999887
Q ss_pred eEEeeeccceeEEEEEEecC---CCCEEEEecCCCeEEEEeCCCcceeeecc-----CCCCCeeEEEEcCCCC-EEEEee
Q psy6442 114 LIKEHKVPAQVHSASLLLNS---ERPIFVCGGEDLKMYKFDYSTGAEIESFK-----GHFGPIHCVKFSPDGE-LYASGS 184 (231)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~d~~i~~~d~~~~~~~~~~~-----~h~~~V~~v~~spd~~-~laS~s 184 (231)
..........+..+.+ +| ++..+++++.|+.|++||++++..+..+. +|..+|++++|+|+++ +|++++
T Consensus 202 ~~~~~~~~~~v~~~~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 279 (357)
T 3i2n_A 202 LRWETNIKNGVCSLEF--DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG 279 (357)
T ss_dssp EEEEEECSSCEEEEEE--SCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred eeeecCCCCceEEEEc--CCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEe
Confidence 7665555556665555 77 88899999999999999998776555444 8999999999999998 899999
Q ss_pred CCCcEEEEeCCCCC
Q psy6442 185 EDGTLRLWQTNVGK 198 (231)
Q Consensus 185 ~d~~v~iwd~~~~~ 198 (231)
.|+.|+|||++.+.
T Consensus 280 ~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 280 GAGGLHLWKYEYPI 293 (357)
T ss_dssp TTSEEEEEEEECCS
T ss_pred CCCcEEEeecCCCc
Confidence 99999999997654
No 74
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.7e-25 Score=187.62 Aligned_cols=203 Identities=13% Similarity=0.150 Sum_probs=163.3
Q ss_pred CCcCCCceeeeccC---CCe---EeeeecccccEEEEEECCCCceeEeccccccc-------------------------
Q psy6442 1 MCVDGKPMLRQGDT---GDW---IGTFEGHKGCVWGVDINKDASKAASGAADFQA------------------------- 49 (231)
Q Consensus 1 ~~~d~~~~~~~~~~---g~~---i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~------------------------- 49 (231)
++.||+|++|+..+ +.. ...+ +|.+.|.+++|+|+++.+++++.|..+
T Consensus 82 ~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~ 160 (437)
T 3gre_A 82 GSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKI 160 (437)
T ss_dssp EETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred ecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEE
Confidence 46899999999876 542 2223 599999999999999999999776422
Q ss_pred -------------------cCCCEEEEEeCCCCEEEEeCCCCCceEEEEe---CCcceeEEEccCCCEEEE-EcCCeEEE
Q psy6442 50 -------------------KNNTRLISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTITV-THGSCVTF 106 (231)
Q Consensus 50 -------------------~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~-~~~~~i~~ 106 (231)
.++..|++++.|++|++||+++++++..+.. ...+.+++++|++..+++ +.++.+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~i 240 (437)
T 3gre_A 161 NLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDI 240 (437)
T ss_dssp EGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred EccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEE
Confidence 1377899999999999999999999888864 578999999999998775 46789999
Q ss_pred EECCCcceEEeeec--cceeEEEEEE--ecCCCCEEEEecCCCeEEEEeCCCcceeeeccC-------------------
Q psy6442 107 LDANSLELIKEHKV--PAQVHSASLL--LNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG------------------- 163 (231)
Q Consensus 107 ~d~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~------------------- 163 (231)
||.+..+.+..+.. ..++..+.+. +++++.++++++.|+.|++||+.+++.+..+.+
T Consensus 241 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (437)
T 3gre_A 241 WDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEE 320 (437)
T ss_dssp EETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGG
T ss_pred EEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccccc
Confidence 99998888776653 3345544432 246788999999999999999998887666553
Q ss_pred -------CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442 164 -------HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 164 -------h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~ 205 (231)
|...|++++|+ ++++|++++.|+.|++||+.+++....+..
T Consensus 321 ~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 368 (437)
T 3gre_A 321 LNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVIS 368 (437)
T ss_dssp CCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred ceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEec
Confidence 55668888999 778999999999999999999987666554
No 75
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=5.3e-25 Score=184.23 Aligned_cols=204 Identities=20% Similarity=0.227 Sum_probs=157.5
Q ss_pred CCcCCCceeeeccCC-------CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC
Q psy6442 1 MCVDGKPMLRQGDTG-------DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA 73 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g-------~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~ 73 (231)
++.||+|++|+..++ +.+..+.+|.+.|.+++|+|++ ...|++++.|++|++||+.+++
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~--------------~~~l~s~~~dg~i~iwd~~~~~ 165 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA--------------QNVLLSAGCDNVILVWDVGTGA 165 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB--------------TTEEEEEETTSCEEEEETTTTE
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC--------------CCEEEEEcCCCEEEEEECCCCC
Confidence 467999999999888 6788899999999999999974 2468999999999999999998
Q ss_pred ceEEEE---eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEee-eccce--eEEEEEEecCCCCEEEEe---cC
Q psy6442 74 EVQKLE---FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEH-KVPAQ--VHSASLLLNSERPIFVCG---GE 143 (231)
Q Consensus 74 ~~~~~~---~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~g---~~ 143 (231)
.+..+. +...+.+++|+|++..+++ +.++.+++||.++.+.+... ..+.. +..+. +++++.++++| +.
T Consensus 166 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~g~~~~~ 243 (402)
T 2aq5_A 166 AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV--FVSEGKILTTGFSRMS 243 (402)
T ss_dssp EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEE--ECSTTEEEEEEECTTC
T ss_pred ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEE--EcCCCcEEEEeccCCC
Confidence 887773 5678999999999987665 46889999999988877766 33322 34333 47889999998 78
Q ss_pred CCeEEEEeCCCcce-eeec-cCCCCCeeEEEEcCCCCEEE-EeeCCCcEEEEeCCCCCe-eeeeeccC-CcccCCCCCCc
Q psy6442 144 DLKMYKFDYSTGAE-IESF-KGHFGPIHCVKFSPDGELYA-SGSEDGTLRLWQTNVGKT-YGLWKCIE-GGLNNSLGLDS 218 (231)
Q Consensus 144 d~~i~~~d~~~~~~-~~~~-~~h~~~V~~v~~spd~~~la-S~s~d~~v~iwd~~~~~~-~~~~~~~~-~~~~~~~~~~~ 218 (231)
++.|++||+.++.. +... ..|...|.+++|+|++++|+ +++.|+.|++||+.++++ ........ ......+++.+
T Consensus 244 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp 323 (402)
T 2aq5_A 244 ERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP 323 (402)
T ss_dssp CEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC
T ss_pred CceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEec
Confidence 99999999987654 3332 25778899999999999886 556899999999999884 33333221 23334444444
Q ss_pred cc
Q psy6442 219 SG 220 (231)
Q Consensus 219 ~~ 220 (231)
++
T Consensus 324 ~~ 325 (402)
T 2aq5_A 324 KR 325 (402)
T ss_dssp GG
T ss_pred cc
Confidence 44
No 76
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=3.8e-25 Score=182.78 Aligned_cols=206 Identities=17% Similarity=0.181 Sum_probs=145.9
Q ss_pred eeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc------------------------cCCCEE-EEEeCCCC
Q psy6442 9 LRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA------------------------KNNTRL-ISCAEDKT 63 (231)
Q Consensus 9 ~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~------------------------~~~~~l-~s~s~D~t 63 (231)
+|+..+.+.+.++++|.+.|.+++|+|+++.++++..+... .++..+ ++++.|++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEV 82 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccE
Confidence 56677788888899999999999999999999988654210 123444 67888999
Q ss_pred EEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCc-ceEEeeeccceeEEEEEEecCCCCEEEE--
Q psy6442 64 VRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSL-ELIKEHKVPAQVHSASLLLNSERPIFVC-- 140 (231)
Q Consensus 64 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 140 (231)
|++||..+++++..+.+...+.+++++++. +++..++.+++||..+. +.+..+.. +.....+ .+ ..++.
T Consensus 83 v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~--s~--~~la~~s 154 (355)
T 3vu4_A 83 VHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVSYGDVISVFKFGNPWKRITDDIR--FGGVCEF--SN--GLLVYSN 154 (355)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEEETTEEEEEESSTTCCBSSCCEE--EEEEEEE--ET--TEEEEEE
T ss_pred EEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeEEecc--CCceEEE--Ec--cEEEEeC
Confidence 999999999999998888889999998864 44456789999999877 55555444 2222233 34 34444
Q ss_pred ecCCCeEEEEeCCCcc----------------eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCc-EEEEeCCCCCeeeee
Q psy6442 141 GGEDLKMYKFDYSTGA----------------EIESFKGHFGPIHCVKFSPDGELYASGSEDGT-LRLWQTNVGKTYGLW 203 (231)
Q Consensus 141 g~~d~~i~~~d~~~~~----------------~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~-v~iwd~~~~~~~~~~ 203 (231)
|+.++.|++||+.++. .+..+.+|.++|++++|+|++++|||++.|++ |+|||+++++....+
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~ 234 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF 234 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 7899999999998765 26778999999999999999999999999999 999999999988888
Q ss_pred e-ccCCcccCCCCCCccccc
Q psy6442 204 K-CIEGGLNNSLGLDSSGHL 222 (231)
Q Consensus 204 ~-~~~~~~~~~~~~~~~~~~ 222 (231)
+ +........++|.++|+.
T Consensus 235 ~~g~h~~~v~~~~~s~~~~~ 254 (355)
T 3vu4_A 235 RRGLDRADVVDMKWSTDGSK 254 (355)
T ss_dssp ECTTCCSCEEEEEECTTSCE
T ss_pred EcCCCCCcEEEEEECCCCCE
Confidence 7 323444555666665543
No 77
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.5e-25 Score=184.84 Aligned_cols=180 Identities=12% Similarity=0.268 Sum_probs=146.9
Q ss_pred eeeccCCCeEeee-ecccccEEEEEECC-CCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC---C---CceEEEEe
Q psy6442 9 LRQGDTGDWIGTF-EGHKGCVWGVDINK-DASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA---S---AEVQKLEF 80 (231)
Q Consensus 9 ~~~~~~g~~i~~l-~gH~~~V~~~~~~~-~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~---~---~~~~~~~~ 80 (231)
.|+ .+|+++.++ ++|.+.|.+++|+| ++ ..|+|++.|++|++||+.+ + ++.....+
T Consensus 47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~---------------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h 110 (437)
T 3gre_A 47 MGN-LRGKLIATLMENEPNSITSSAVSPGET---------------PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDC 110 (437)
T ss_dssp GGG-CCCCEEEEECTTTTSCEEEEEEECSSS---------------CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEEC
T ss_pred ccc-ccceEEeeeccCCCCceEEEEECCCCC---------------CEEEEecCCceEEEeECcccccCcccceeeeccC
Confidence 577 669999999 89999999999999 64 4689999999999999876 3 23455567
Q ss_pred CCcceeEEEccCCCEEEE-EcCCeEEEEECC---CcceEEeee-------------ccceeEEEEEEecCCCCEEEEecC
Q psy6442 81 GAVPNSLEISRDGTTITV-THGSCVTFLDAN---SLELIKEHK-------------VPAQVHSASLLLNSERPIFVCGGE 143 (231)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~---~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~g~~ 143 (231)
...+.+++|+|++..+++ +.++.+++||.. ..+...... ....+..+.+..++++..+++++.
T Consensus 111 ~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (437)
T 3gre_A 111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN 190 (437)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC
Confidence 889999999999987665 567999999984 333322211 112233333345678999999999
Q ss_pred CCeEEEEeCCCcceeeeccC--CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442 144 DLKMYKFDYSTGAEIESFKG--HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK 204 (231)
Q Consensus 144 d~~i~~~d~~~~~~~~~~~~--h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~ 204 (231)
|+.|++||+++++.+..+.+ |..+|++++|+|++++|++++.|++|+|||+++++....++
T Consensus 191 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 253 (437)
T 3gre_A 191 LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS 253 (437)
T ss_dssp TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB
T ss_pred CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe
Confidence 99999999999999999988 89999999999999999999999999999999999887775
No 78
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.94 E-value=1.5e-24 Score=180.23 Aligned_cols=200 Identities=18% Similarity=0.192 Sum_probs=155.0
Q ss_pred CCcCCCceeeeccCCCeEeeee-------------cccccEEEEEECC-CCceeEecccccccc----------------
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFE-------------GHKGCVWGVDINK-DASKAASGAADFQAK---------------- 50 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~-------------gH~~~V~~~~~~~-~~~~~~s~~~d~~~~---------------- 50 (231)
++.||+|++|+..+++....+. +|.+.|.++.|+| +++.+++++.+..+.
T Consensus 62 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 141 (408)
T 4a11_B 62 GGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFE 141 (408)
T ss_dssp EETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred EcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCC
Confidence 3679999999999888776664 6999999999999 778898887654221
Q ss_pred -------------CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCE-EE-EEcCCeEEEEECCCcc-
Q psy6442 51 -------------NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTT-IT-VTHGSCVTFLDANSLE- 113 (231)
Q Consensus 51 -------------~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~-~~-~~~~~~i~~~d~~~~~- 113 (231)
++..+++++.|+.|++||+.+++.+..+. +...+.+++++|++.. ++ .+.++.+++||.+...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~ 221 (408)
T 4a11_B 142 ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG 221 (408)
T ss_dssp SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSC
T ss_pred CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCc
Confidence 44589999999999999999998887776 4678899999999984 44 4567899999987654
Q ss_pred eEEee----------------eccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc----------------------
Q psy6442 114 LIKEH----------------KVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG---------------------- 155 (231)
Q Consensus 114 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~---------------------- 155 (231)
.+... .....+..+ .++|++..+++++.|+.|++||+.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (408)
T 4a11_B 222 CLITLDQHNGKKSQAVESANTAHNGKVNGL--CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV 299 (408)
T ss_dssp CSEECCTTTTCSCCCTTTSSCSCSSCEEEE--EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEE
T ss_pred ccccccccccccceeeccccccccCceeEE--EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEE
Confidence 22221 112234444 44888999999999999999987653
Q ss_pred -------------------------ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442 156 -------------------------AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL 202 (231)
Q Consensus 156 -------------------------~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~ 202 (231)
+.+..+.+|..+|.+++|+|++++|++++.||.|+|||+.+++....
T Consensus 300 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 300 SCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp CCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred ecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 34556778999999999999999999999999999999999887643
No 79
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.93 E-value=7.9e-25 Score=181.97 Aligned_cols=180 Identities=21% Similarity=0.251 Sum_probs=154.6
Q ss_pred CCcCCCceeeeccC------CCeEe-----eeec-------ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCC
Q psy6442 1 MCVDGKPMLRQGDT------GDWIG-----TFEG-------HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDK 62 (231)
Q Consensus 1 ~~~d~~~~~~~~~~------g~~i~-----~l~g-------H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ 62 (231)
++.||.|++|+..+ ++.+. .+.+ |...|.+++|+|++ .|++++.|+
T Consensus 144 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------~l~~~~~dg 207 (397)
T 1sq9_A 144 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG----------------LIATGFNNG 207 (397)
T ss_dssp EETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS----------------EEEEECTTS
T ss_pred EeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc----------------eEEEEeCCC
Confidence 35799999999998 88877 8854 89999999999974 588999999
Q ss_pred CEEEEeCCCCCceEEEEe-------CCcceeEEEccCCCEEEEE-cC---CeEEEEECCCcceEEeeec-----------
Q psy6442 63 TVRLWDVSASAEVQKLEF-------GAVPNSLEISRDGTTITVT-HG---SCVTFLDANSLELIKEHKV----------- 120 (231)
Q Consensus 63 ti~iwd~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~-~~---~~i~~~d~~~~~~~~~~~~----------- 120 (231)
+|++||+++++.+..+.. ...+.+++|+|++..++++ .+ +.+++||..+.+.+..+..
T Consensus 208 ~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 287 (397)
T 1sq9_A 208 TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE 287 (397)
T ss_dssp EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CC
T ss_pred cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccc
Confidence 999999999988888875 6789999999999987765 45 7999999998887776654
Q ss_pred ---cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeecc------CC---------------CCCeeEEEEcCC
Q psy6442 121 ---PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK------GH---------------FGPIHCVKFSPD 176 (231)
Q Consensus 121 ---~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~------~h---------------~~~V~~v~~spd 176 (231)
...+..+. +++++.++++++.|+.|++||+.+++.+..+. +| ..+|++++|+|+
T Consensus 288 ~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~ 365 (397)
T 1sq9_A 288 FAHSSWVMSLS--FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK 365 (397)
T ss_dssp BSBSSCEEEEE--ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred cccCCcEEEEE--ECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccc
Confidence 23454444 48899999999999999999999999999888 88 999999999999
Q ss_pred C----------CEEEEeeCCCcEEEEeCCCCC
Q psy6442 177 G----------ELYASGSEDGTLRLWQTNVGK 198 (231)
Q Consensus 177 ~----------~~laS~s~d~~v~iwd~~~~~ 198 (231)
+ ++|++++.|+.|+||++.+|+
T Consensus 366 g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 366 GWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 8 799999999999999998874
No 80
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.93 E-value=2.9e-24 Score=178.51 Aligned_cols=181 Identities=17% Similarity=0.232 Sum_probs=152.7
Q ss_pred cCCCceeeeccCCCeEeeeecccccEEEEEECC-CCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE--
Q psy6442 3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK-DASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-- 79 (231)
Q Consensus 3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~-~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-- 79 (231)
.++++++|+.++++....+++|.+.|.+++|+| + +..|++++.||+|++||+.++.....+.
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~---------------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 85 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVE---------------GRYMLSGGSDGVIVLYDLENSSRQSYYTCK 85 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTT---------------CCEEEEEETTSCEEEEECCCCSSSSCEEEC
T ss_pred ccCcceeeccccCcceeeeeccCCcEEEEEEecCC---------------CCEEEEEcCCCeEEEEECCCCcccceEecc
Confidence 356788999999999999999999999999999 6 4468999999999999999887655544
Q ss_pred ------------eCCcceeEEEcc-CCCEEEE-EcCCeEEEEECCCcceEEeeeccceeEEEEEEe-cCCCCEEEEecCC
Q psy6442 80 ------------FGAVPNSLEISR-DGTTITV-THGSCVTFLDANSLELIKEHKVPAQVHSASLLL-NSERPIFVCGGED 144 (231)
Q Consensus 80 ------------~~~~~~~v~~~~-~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~d 144 (231)
+...+.+++|+| ++..++. +.++.+++||..+.+.......+..+....+.. .+++.++++++.+
T Consensus 86 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (408)
T 4a11_B 86 AVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG 165 (408)
T ss_dssp EEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS
T ss_pred ccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCC
Confidence 567899999999 5555554 568899999999988887777666665555532 2255589999999
Q ss_pred CeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCCCC
Q psy6442 145 LKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTNVGK 198 (231)
Q Consensus 145 ~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~~~~ 198 (231)
+.|++||+.+++.+..+.+|..+|.+++|+|++. +|++++.|+.|++||+++++
T Consensus 166 ~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~ 220 (408)
T 4a11_B 166 PKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS 220 (408)
T ss_dssp SSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSS
T ss_pred CeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC
Confidence 9999999999999999999999999999999998 69999999999999998776
No 81
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.93 E-value=6.8e-25 Score=178.39 Aligned_cols=182 Identities=11% Similarity=0.130 Sum_probs=137.9
Q ss_pred CCcCCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE
Q psy6442 1 MCVDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL 78 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~ 78 (231)
++.|++|++|+..+++ .+.++.+|.+.|.+++|+|+. ++..|++++.|++|++||++.+......
T Consensus 77 ~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~-------------~g~~lasgs~D~~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 77 CSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHD-------------YGLILACGSSDGAISLLTYTGEGQWEVK 143 (316)
T ss_dssp EETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTT-------------TCSCEEEECSSSCEEEEEECSSSCEEEC
T ss_pred EECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCC-------------CCcEEEEEcCCCCEEEEecCCCCCccee
Confidence 4689999999998884 577889999999999999973 2456899999999999999876432111
Q ss_pred ----EeCCcceeEEEccCC-----------------CEEEE-EcCCeEEEEECCCc---ceEEeeecc-ceeEEEEEEec
Q psy6442 79 ----EFGAVPNSLEISRDG-----------------TTITV-THGSCVTFLDANSL---ELIKEHKVP-AQVHSASLLLN 132 (231)
Q Consensus 79 ----~~~~~~~~v~~~~~~-----------------~~~~~-~~~~~i~~~d~~~~---~~~~~~~~~-~~~~~~~~~~~ 132 (231)
.+...+.+++|+|+. ..++. +.++.+++||.... .....+..+ ..+..+.+ +
T Consensus 144 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~--s 221 (316)
T 3bg1_A 144 KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW--A 221 (316)
T ss_dssp CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEEC--C
T ss_pred eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEe--c
Confidence 123567889999873 34443 46789999998654 233333332 34555555 6
Q ss_pred CCC----CEEEEecCCCeEEEEeCCCcc----eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442 133 SER----PIFVCGGEDLKMYKFDYSTGA----EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG 197 (231)
Q Consensus 133 ~~~----~~~~~g~~d~~i~~~d~~~~~----~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~ 197 (231)
|++ ..+++++.|++|++|++.+.. ....+.+|...|.+++|+|++++||+++.|++|+||+....
T Consensus 222 p~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp CCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred CCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence 664 789999999999999987621 23345678999999999999999999999999999997643
No 82
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=1.2e-25 Score=188.19 Aligned_cols=214 Identities=11% Similarity=0.112 Sum_probs=140.0
Q ss_pred CCcCCCceeeeccCCCe-----EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCce
Q psy6442 1 MCVDGKPMLRQGDTGDW-----IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEV 75 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~-----i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~ 75 (231)
++.|++||||+..+++. +.+++||++.|.+++|+|... .....+++.|+|+|.|++|||||+.++.+.
T Consensus 107 ~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~-------~~~~~d~~~las~s~D~tv~~Wd~~~~~~~ 179 (393)
T 4gq1_A 107 VCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYS-------ADNRLAEQVIASVGDDCTLIIWRLTDEGPI 179 (393)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEEC-------TTCSEEEEEEEEEETTSEEEEEEEETTEEE
T ss_pred EeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccc-------cccCCCCCEEEEEECCCeEEEEECCCCcee
Confidence 46899999999988864 456889999999999987210 011234678999999999999999877655
Q ss_pred EE-EEeCCcceeEEEccCCC-EEE-EEcCCeEEEEECCCcceEEeeec--------------------------cceeEE
Q psy6442 76 QK-LEFGAVPNSLEISRDGT-TIT-VTHGSCVTFLDANSLELIKEHKV--------------------------PAQVHS 126 (231)
Q Consensus 76 ~~-~~~~~~~~~v~~~~~~~-~~~-~~~~~~i~~~d~~~~~~~~~~~~--------------------------~~~~~~ 126 (231)
.. ..+...+.+++|+|++. .++ .+.++.+++||..+.+....... ...+..
T Consensus 180 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~ 259 (393)
T 4gq1_A 180 LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLAN 259 (393)
T ss_dssp EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSE
T ss_pred eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccccee
Confidence 44 45678899999999885 344 35688999999876554322110 011222
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcC--------------------CCCEEEEeeCC
Q psy6442 127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP--------------------DGELYASGSED 186 (231)
Q Consensus 127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~sp--------------------d~~~laS~s~d 186 (231)
+.+ ..+++..+++++.|+++++||+..+.....+..|...+..+.++| ++.++++++.|
T Consensus 260 v~~-~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~D 338 (393)
T 4gq1_A 260 VRW-IGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQH 338 (393)
T ss_dssp EEE-ETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTT
T ss_pred eee-ecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCC
Confidence 222 357889999999999999999988877776666666655554444 23467889999
Q ss_pred CcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccccc
Q psy6442 187 GTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLN 223 (231)
Q Consensus 187 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (231)
++|+|||+.+++......... .....++|.++|+.+
T Consensus 339 g~V~lwd~~~~~~~~~~~~~~-~~V~svafspdG~~L 374 (393)
T 4gq1_A 339 GLIQLINTYEKDSNSIPIQLG-MPIVDFCWHQDGSHL 374 (393)
T ss_dssp TEEEEEETTCTTCCEEEEECS-SCEEEEEECTTSSEE
T ss_pred CEEEEEECCCCcEEEEecCCC-CcEEEEEEcCCCCEE
Confidence 999999999998765544432 345567888888765
No 83
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.93 E-value=3.8e-24 Score=181.86 Aligned_cols=196 Identities=19% Similarity=0.204 Sum_probs=163.4
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEEC--CCCceeEecccccccc----------------------------
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN--KDASKAASGAADFQAK---------------------------- 50 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~--~~~~~~~s~~~d~~~~---------------------------- 50 (231)
++.||+|++|+..+++.+.++.+|.+.|.+++|+ ++++.+++++.|..+.
T Consensus 179 ~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (464)
T 3v7d_B 179 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE 258 (464)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGG
T ss_pred EeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCC
Confidence 4689999999999999999999999999999998 5778899887653221
Q ss_pred --------------------CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEE-cCCeEEEEE
Q psy6442 51 --------------------NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLD 108 (231)
Q Consensus 51 --------------------~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d 108 (231)
++..|++++.|++|++||+.+++++..+. +...+.+++++|++..++++ .++.+++||
T Consensus 259 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 338 (464)
T 3v7d_B 259 NPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 338 (464)
T ss_dssp CTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 35689999999999999999998887775 45678999999999877654 578999999
Q ss_pred CCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCC
Q psy6442 109 ANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187 (231)
Q Consensus 109 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~ 187 (231)
..+.+.+..+..+ ..+..+.+ + +..+++++.|+.|++||+.++.....+. |...+..++|+|+++++++++ |+
T Consensus 339 ~~~~~~~~~~~~h~~~v~~~~~--~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg 412 (464)
T 3v7d_B 339 LENGELMYTLQGHTALVGLLRL--S--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-EN 412 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEE--C--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TT
T ss_pred CCCCcEEEEEeCCCCcEEEEEE--c--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CC
Confidence 9988887776543 34544444 3 5789999999999999998877665553 677888999999999999999 89
Q ss_pred cEEEEeCCCCCeeee
Q psy6442 188 TLRLWQTNVGKTYGL 202 (231)
Q Consensus 188 ~v~iwd~~~~~~~~~ 202 (231)
.|+|||+.+++....
T Consensus 413 ~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 413 QFNIYNLRSGKLVHA 427 (464)
T ss_dssp EEEEEETTTCCEEES
T ss_pred eEEEEECCCCcEEeh
Confidence 999999999987754
No 84
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.93 E-value=3.6e-25 Score=208.47 Aligned_cols=201 Identities=20% Similarity=0.315 Sum_probs=169.5
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc-------------------------------
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA------------------------------- 49 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~------------------------------- 49 (231)
++.||+|++|+..+++.+..+.+|.+.|.++.|+|+++.+++++.|..+
T Consensus 858 ~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1249)
T 3sfz_A 858 ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMV 937 (1249)
T ss_dssp ECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEE
T ss_pred EeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEE
Confidence 3578999999999999999999999999999999999988888654210
Q ss_pred ---------------------------------------------------------------------------cCCCE
Q psy6442 50 ---------------------------------------------------------------------------KNNTR 54 (231)
Q Consensus 50 ---------------------------------------------------------------------------~~~~~ 54 (231)
.++..
T Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1017 (1249)
T 3sfz_A 938 LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKT 1017 (1249)
T ss_dssp EEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSC
T ss_pred EEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCE
Confidence 04567
Q ss_pred EEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecc-ceeEEEEEEecC
Q psy6442 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVP-AQVHSASLLLNS 133 (231)
Q Consensus 55 l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~ 133 (231)
|++++.|++|++||+.+++......+...+.+++++|++..+..+.++.+++||..+.+....+..+ ..+..+. ++|
T Consensus 1018 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~s~ 1095 (1249)
T 3sfz_A 1018 LISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA--ISS 1095 (1249)
T ss_dssp EEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEE--ECS
T ss_pred EEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEE--ECC
Confidence 8888888888888888776655445567788999999988888888999999999888877666543 3444444 488
Q ss_pred CCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442 134 ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW 203 (231)
Q Consensus 134 ~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~ 203 (231)
++..+++++.|++|++||+.++..+..+.+|..+|++++|+|++++|++++.||+|+|||+.+++.....
T Consensus 1096 d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~ 1165 (1249)
T 3sfz_A 1096 DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC 1165 (1249)
T ss_dssp SSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCC
T ss_pred CCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999998865443
No 85
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.93 E-value=6.2e-25 Score=184.06 Aligned_cols=179 Identities=19% Similarity=0.245 Sum_probs=145.1
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF 80 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~ 80 (231)
++.||+|++|+..+++.+.++++|.+.|.+++|+|++ ..|++++.|++|++||+++++.+..+..
T Consensus 157 ~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---------------~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 221 (420)
T 3vl1_A 157 SSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG---------------RNVLSASLDGTIRLWECGTGTTIHTFNR 221 (420)
T ss_dssp EETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT---------------TEEEEEETTSCEEEEETTTTEEEEEECB
T ss_pred EeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC---------------CEEEEEcCCCcEEEeECCCCceeEEeec
Confidence 4679999999999999999999999999999999974 4589999999999999999888777653
Q ss_pred C-------------------------CcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeecc--ceeEEEEEEec
Q psy6442 81 G-------------------------AVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVP--AQVHSASLLLN 132 (231)
Q Consensus 81 ~-------------------------~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~ 132 (231)
. ..+.+++|+|++..++++ .++.+++||..+.......... ..+..+. ++
T Consensus 222 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~--~~ 299 (420)
T 3vl1_A 222 KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLT--VD 299 (420)
T ss_dssp TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEE--EC
T ss_pred CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEE--Ee
Confidence 1 334455667888877664 5789999999888776665433 3454444 48
Q ss_pred CCCC-EEEEecCCCeEEEEeCCCcce-eeeccC-CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442 133 SERP-IFVCGGEDLKMYKFDYSTGAE-IESFKG-HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG 197 (231)
Q Consensus 133 ~~~~-~~~~g~~d~~i~~~d~~~~~~-~~~~~~-h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~ 197 (231)
|++. ++++|+.|+.|++||++++.. +..+.+ |..+|.++.+ |++++|++++.|++|+||++...
T Consensus 300 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 300 GNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp SSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred CCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence 8888 999999999999999988754 677766 6678888855 57889999999999999998764
No 86
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.93 E-value=2.2e-24 Score=179.07 Aligned_cols=178 Identities=17% Similarity=0.221 Sum_probs=143.1
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC----CCceE
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA----SAEVQ 76 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~----~~~~~ 76 (231)
++.||+|++|+. +++.+.++.+|.+.|.+++|+|++. ..|++++.|++|++||+++ +.++.
T Consensus 181 ~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~--------------~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 245 (383)
T 3ei3_B 181 GDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCD--------------WLMATSSVDATVKLWDLRNIKDKNSYIA 245 (383)
T ss_dssp EETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCT--------------TEEEEEETTSEEEEEEGGGCCSTTCEEE
T ss_pred ECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCC--------------CEEEEEeCCCEEEEEeCCCCCcccceEE
Confidence 367899999997 6899999999999999999999753 2589999999999999987 66677
Q ss_pred EEEeCCcceeEEEcc-CCCEEEEE-cCCeEEEEECCCcceEEeeecc--------cee--------EEEEEEecCCCCEE
Q psy6442 77 KLEFGAVPNSLEISR-DGTTITVT-HGSCVTFLDANSLELIKEHKVP--------AQV--------HSASLLLNSERPIF 138 (231)
Q Consensus 77 ~~~~~~~~~~v~~~~-~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~ 138 (231)
.+.+...+.+++|+| ++..++++ .++.+++||..+.......... ..+ ....+.+++++.+
T Consensus 246 ~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~- 324 (383)
T 3ei3_B 246 EMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL- 324 (383)
T ss_dssp EEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-
T ss_pred EecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-
Confidence 777788999999999 99877654 5789999999876654433211 011 1112233566665
Q ss_pred EEecCCCeEEEEeCCCcceeeeccC--CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442 139 VCGGEDLKMYKFDYSTGAEIESFKG--HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV 196 (231)
Q Consensus 139 ~~g~~d~~i~~~d~~~~~~~~~~~~--h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~ 196 (231)
+++.|+.|++||+.+++.+..+.+ |...+..++|+|++++|++++ |+.|+|||+++
T Consensus 325 -s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 325 -LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp -CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred -ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 778999999999999999999887 567788889999999999998 99999999864
No 87
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.93 E-value=1.4e-23 Score=177.84 Aligned_cols=195 Identities=22% Similarity=0.362 Sum_probs=161.7
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-------------------------CCCEE
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-------------------------NNTRL 55 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-------------------------~~~~l 55 (231)
++.||+|++|+..+++.+.++.+|.+.|+++.|+ ++.+++++.|..+. ++..+
T Consensus 135 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l 212 (445)
T 2ovr_B 135 GSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV 212 (445)
T ss_dssp EETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEE
T ss_pred EECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEE
Confidence 4679999999999999999999999999999997 56888887764322 56789
Q ss_pred EEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEE-EEEcCCeEEEEECCCcceEEeeecc-ceeEEEEEEec
Q psy6442 56 ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTI-TVTHGSCVTFLDANSLELIKEHKVP-AQVHSASLLLN 132 (231)
Q Consensus 56 ~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~ 132 (231)
++++.|++|++||+.+++.+..+. +...+.++++ ++..+ ..+.++.+++||..+.+.+..+..+ ..+..+.+
T Consensus 213 ~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--- 287 (445)
T 2ovr_B 213 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--- 287 (445)
T ss_dssp EEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---
T ss_pred EEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---
Confidence 999999999999999998887765 4567788888 45544 4566899999999888777766543 34444433
Q ss_pred CCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442 133 SERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 133 ~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~ 205 (231)
++..+++++.|+.|++||+.+++.+..+.+|...+.++.++ +.+|++++.|+.|++||+.+++....++.
T Consensus 288 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 357 (445)
T 2ovr_B 288 -DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQG 357 (445)
T ss_dssp -CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred -CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEcc
Confidence 67889999999999999999999999999999999988774 66999999999999999999998877764
No 88
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.93 E-value=1.3e-23 Score=177.80 Aligned_cols=188 Identities=20% Similarity=0.416 Sum_probs=155.1
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-------------------------CCCEE
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-------------------------NNTRL 55 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-------------------------~~~~l 55 (231)
++.||+|++|+..+++.+.++.+|.+.|.++.| +++.+++++.|..+. ++..+
T Consensus 149 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l 226 (435)
T 1p22_A 149 GLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMM 226 (435)
T ss_dssp EESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEE
T ss_pred EeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEE
Confidence 467999999999999999999999999999998 678999988764332 56789
Q ss_pred EEEeCCCCEEEEeCCCCCceEE---E-EeCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeecc-ceeEEEEE
Q psy6442 56 ISCAEDKTVRLWDVSASAEVQK---L-EFGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVP-AQVHSASL 129 (231)
Q Consensus 56 ~s~s~D~ti~iwd~~~~~~~~~---~-~~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~ 129 (231)
++++.|++|++||+.++..... + .+...+.++++ ++..+++ +.++.+++||..+.+.+..+..+ ..+..+.+
T Consensus 227 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 304 (435)
T 1p22_A 227 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY 304 (435)
T ss_dssp EEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe
Confidence 9999999999999998776532 2 23456778887 5555554 56889999999998887776643 34444333
Q ss_pred EecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442 130 LLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198 (231)
Q Consensus 130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~ 198 (231)
++..+++|+.|+.|++||+.+++.+.++.+|..+|.+++| ++.+|++++.||.|+|||+.+++
T Consensus 305 ----~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 305 ----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp ----ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred ----CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence 4678999999999999999999999999999999999999 78899999999999999987665
No 89
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.93 E-value=2.4e-23 Score=174.29 Aligned_cols=199 Identities=17% Similarity=0.227 Sum_probs=158.1
Q ss_pred CCcCCCceeeeccCCCeEeeeec-ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEG-HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE 79 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~g-H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~ 79 (231)
++.||+|++|+..+|+.+..+.. |.+.|.+++|+|++ ..|++++.||+|++||+.+++.+..+.
T Consensus 109 ~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~---------------~~l~~~~~dg~i~iwd~~~~~~~~~~~ 173 (401)
T 4aez_A 109 VALERNVYVWNADSGSVSALAETDESTYVASVKWSHDG---------------SFLSVGLGNGLVDIYDVESQTKLRTMA 173 (401)
T ss_dssp EEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS---------------SEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC---------------CEEEEECCCCeEEEEECcCCeEEEEec
Confidence 36799999999999999888776 89999999999974 458899999999999999998887775
Q ss_pred -eCCcceeEEEccCCCEEE-EEcCCeEEEEECCC-cceEEeeec-cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc
Q psy6442 80 -FGAVPNSLEISRDGTTIT-VTHGSCVTFLDANS-LELIKEHKV-PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG 155 (231)
Q Consensus 80 -~~~~~~~v~~~~~~~~~~-~~~~~~i~~~d~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~ 155 (231)
+...+.+++|++ ..++ .+.++.+.+||.+. ......... ...+..+. +++++..+++++.|+.|++||+.++
T Consensus 174 ~~~~~v~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~s~~~d~~v~iwd~~~~ 249 (401)
T 4aez_A 174 GHQARVGCLSWNR--HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLA--WRSDGLQLASGGNDNVVQIWDARSS 249 (401)
T ss_dssp CCSSCEEEEEEET--TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE--ECTTSSEEEEEETTSCEEEEETTCS
T ss_pred CCCCceEEEEECC--CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEE--EcCCCCEEEEEeCCCeEEEccCCCC
Confidence 456788999944 4444 45689999999984 444444433 33455444 4889999999999999999999999
Q ss_pred ceeeeccCCCCCeeEEEEcCCC-CEEEEee--CCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccc
Q psy6442 156 AEIESFKGHFGPIHCVKFSPDG-ELYASGS--EDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSG 220 (231)
Q Consensus 156 ~~~~~~~~h~~~V~~v~~spd~-~~laS~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (231)
..+..+.+|..+|.+++|+|++ .++++++ .|+.|++||+.+++....++. +.....+.+.+++
T Consensus 250 ~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~s~~~ 315 (401)
T 4aez_A 250 IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA--GSQVTSLIWSPHS 315 (401)
T ss_dssp SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC--SSCEEEEEECSSS
T ss_pred CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC--CCcEEEEEECCCC
Confidence 9999999999999999999976 5677765 799999999999998877753 2333444444443
No 90
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=9.2e-24 Score=179.46 Aligned_cols=186 Identities=16% Similarity=0.250 Sum_probs=151.6
Q ss_pred CcCCCceeeeccCCC---eEeeeecc------------------------------------------------------
Q psy6442 2 CVDGKPMLRQGDTGD---WIGTFEGH------------------------------------------------------ 24 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~---~i~~l~gH------------------------------------------------------ 24 (231)
+.++.|++|+..+|+ .+.++..|
T Consensus 22 ~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (450)
T 2vdu_B 22 IIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTAAKVPSPGLGAPPI 101 (450)
T ss_dssp EETTEEEEEEEETTTEEEEEEEEECCC---------------------------------------------------CC
T ss_pred EeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccccCccccCCCCCCCcc
Confidence 457899999999999 78777744
Q ss_pred cccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCC--CCCceEEEE---eCCcceeEEEccCCCEEEEE
Q psy6442 25 KGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVS--ASAEVQKLE---FGAVPNSLEISRDGTTITVT 99 (231)
Q Consensus 25 ~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~--~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~ 99 (231)
.+.|.+++|+|+++.+ +++++.|++|++||+. .++++..+. +...+.+++|+|++..++++
T Consensus 102 ~~~v~~~~~s~d~~~l--------------~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 167 (450)
T 2vdu_B 102 YSYIRNLRLTSDESRL--------------IACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIA 167 (450)
T ss_dssp CCCEEEEEECTTSSEE--------------EEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CCceEEEEEcCCCCEE--------------EEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEE
Confidence 3369999999975432 4889999999999999 788877763 45778999999999987765
Q ss_pred -cCCeEEEEECCCcceEE----eeec-cceeEEEEEEecCC---CCEEEEecCCCeEEEEeCCCcceeee-ccCCCCCee
Q psy6442 100 -HGSCVTFLDANSLELIK----EHKV-PAQVHSASLLLNSE---RPIFVCGGEDLKMYKFDYSTGAEIES-FKGHFGPIH 169 (231)
Q Consensus 100 -~~~~i~~~d~~~~~~~~----~~~~-~~~~~~~~~~~~~~---~~~~~~g~~d~~i~~~d~~~~~~~~~-~~~h~~~V~ 169 (231)
.++.+.+|+..+..... .+.. ...+..+.+ +|+ +.++++++.|+.|++||+.++..+.. +.+|..+|.
T Consensus 168 ~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~ 245 (450)
T 2vdu_B 168 DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHL--IKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVS 245 (450)
T ss_dssp ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEE--EECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEE
T ss_pred eCCCcEEEEecCCcccccccceeeecccCceEEEEE--cCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceE
Confidence 56899999987765432 2222 234555555 667 88999999999999999999888877 569999999
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442 170 CVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK 204 (231)
Q Consensus 170 ~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~ 204 (231)
+++|+ ++.+|++++.|++|+|||+.+++....++
T Consensus 246 ~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 279 (450)
T 2vdu_B 246 SICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFD 279 (450)
T ss_dssp EEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred EEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence 99999 99999999999999999999999877665
No 91
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.93 E-value=1.2e-24 Score=177.17 Aligned_cols=186 Identities=13% Similarity=0.165 Sum_probs=150.9
Q ss_pred CCcCCCceeeec-cCCCeEeeeec--ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC------
Q psy6442 1 MCVDGKPMLRQG-DTGDWIGTFEG--HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA------ 71 (231)
Q Consensus 1 ~~~d~~~~~~~~-~~g~~i~~l~g--H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~------ 71 (231)
++.||+|++|+. .+++. ..+.+ |.+.|.++.|+| ++ .|++++.|++|++||+++
T Consensus 75 ~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~---------------~l~s~~~d~~i~iwd~~~~~~~~~ 137 (342)
T 1yfq_A 75 GTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DD---------------KLIAASWDGLIEVIDPRNYGDGVI 137 (342)
T ss_dssp EETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TT---------------EEEEEETTSEEEEECHHHHTTBCE
T ss_pred EcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CC---------------EEEEEcCCCeEEEEcccccccccc
Confidence 357999999998 77765 67888 999999999988 44 478999999999999987
Q ss_pred ---CCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCC-cceE-Eeee--ccceeEEEEEEecC-CCCEEEEecC
Q psy6442 72 ---SAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS-LELI-KEHK--VPAQVHSASLLLNS-ERPIFVCGGE 143 (231)
Q Consensus 72 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~-~~~~-~~~~--~~~~~~~~~~~~~~-~~~~~~~g~~ 143 (231)
++++..+.+...+.+++++|++ .+..+.++.+.+||... .... .... ....+..+ .+++ ++..+++++.
T Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i--~~~~~~~~~l~~~~~ 214 (342)
T 1yfq_A 138 AVKNLNSNNTKVKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV--ALLPKEQEGYACSSI 214 (342)
T ss_dssp EEEESCSSSSSSCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEE--EECSGGGCEEEEEET
T ss_pred cccCCeeeEEeeCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEE--EECCCCCCEEEEEec
Confidence 6666566667789999999988 55566788999999887 4432 2222 23344444 4488 8899999999
Q ss_pred CCeEEEEeCCCc------ceeeeccCCCC---------CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeecc
Q psy6442 144 DLKMYKFDYSTG------AEIESFKGHFG---------PIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCI 206 (231)
Q Consensus 144 d~~i~~~d~~~~------~~~~~~~~h~~---------~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~ 206 (231)
++.+++|++... +.+..+.+|.. +|.+++|+|++++|++++.|+.|+|||+.+++....++..
T Consensus 215 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 292 (342)
T 1yfq_A 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence 999999999876 66777877765 9999999999999999999999999999999887776654
No 92
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.93 E-value=9.9e-24 Score=169.45 Aligned_cols=193 Identities=19% Similarity=0.236 Sum_probs=156.1
Q ss_pred CCcCCCceeeeccC---CCeEeeeecccccEEEEEECCCCceeEeccccccc--------------------------cC
Q psy6442 1 MCVDGKPMLRQGDT---GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA--------------------------KN 51 (231)
Q Consensus 1 ~~~d~~~~~~~~~~---g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~--------------------------~~ 51 (231)
++.||.+++|+... ++.+..+.+|.+.|.++.| +++.+++++.+..+ .+
T Consensus 77 ~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~ 154 (313)
T 3odt_A 77 GGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFS 154 (313)
T ss_dssp EETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETT
T ss_pred ecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCC
Confidence 36789999888744 4678889999999999999 56688887665321 26
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCceEEEE--eCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecc-ceeEEEE
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVP-AQVHSAS 128 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~ 128 (231)
+..+++++.|++|++||. ++....+. +...+.+++++|++..+..+.++.+++||..+.+.+..+..+ ..+..+.
T Consensus 155 ~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 232 (313)
T 3odt_A 155 ENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIK 232 (313)
T ss_dssp TTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred CCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEE
Confidence 889999999999999993 34444443 456789999999999666677899999999988887776643 3555554
Q ss_pred EEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeee
Q psy6442 129 LLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYG 201 (231)
Q Consensus 129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~ 201 (231)
+ +|++ .+++++.|+.|++||+.+++.+..+..|..+|.+++|+|+++ +++++.|+.|+||++.+++...
T Consensus 233 ~--~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 233 L--LPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp E--CTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred E--ecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 4 7777 588999999999999999999999999999999999999998 5679999999999999877543
No 93
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.93 E-value=9.3e-25 Score=178.97 Aligned_cols=179 Identities=16% Similarity=0.298 Sum_probs=139.0
Q ss_pred CCcCCCceeeeccCCCeEeee---ecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEE
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTF---EGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQK 77 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l---~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~ 77 (231)
++.||+|++|+..+++.+..+ .+|.+.|.++.|+|++ ..|++++.|++|++||+++++....
T Consensus 134 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------~~l~~~~~dg~i~i~d~~~~~~~~~ 198 (366)
T 3k26_A 134 VSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG---------------EKIMSCGMDHSLKLWRINSKRMMNA 198 (366)
T ss_dssp EETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS---------------SEEEEEETTSCEEEEESCSHHHHHH
T ss_pred EeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC---------------CEEEEecCCCCEEEEECCCCccccc
Confidence 367999999999999999988 7899999999999974 4589999999999999987654322
Q ss_pred EE-----------------------------eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcce-------------
Q psy6442 78 LE-----------------------------FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLEL------------- 114 (231)
Q Consensus 78 ~~-----------------------------~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~------------- 114 (231)
+. +...+.+++++ +..+++ +.++.+++||......
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 276 (366)
T 3k26_A 199 IKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVT 276 (366)
T ss_dssp HHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEE
T ss_pred cceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchh
Confidence 21 45678899998 445544 4678999999876543
Q ss_pred -EEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce----eeeccCC--CCCeeEEEEcCCCCEEEEeeCC
Q psy6442 115 -IKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE----IESFKGH--FGPIHCVKFSPDGELYASGSED 186 (231)
Q Consensus 115 -~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~----~~~~~~h--~~~V~~v~~spd~~~laS~s~d 186 (231)
+..+..+ ..+..+.+..++++.++++++.|+.|++||+.+++. +..+.+| ..+|++++|+|++++|++++.|
T Consensus 277 ~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 356 (366)
T 3k26_A 277 ILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDD 356 (366)
T ss_dssp EEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred eeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCC
Confidence 2222222 234444443333399999999999999999988753 3467777 7999999999999999999999
Q ss_pred CcEEEEeCCC
Q psy6442 187 GTLRLWQTNV 196 (231)
Q Consensus 187 ~~v~iwd~~~ 196 (231)
+.|+|||+.+
T Consensus 357 g~i~iwd~~~ 366 (366)
T 3k26_A 357 ASIWRWDRLR 366 (366)
T ss_dssp SEEEEEEC--
T ss_pred CEEEEEEecC
Confidence 9999999853
No 94
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1e-23 Score=173.08 Aligned_cols=180 Identities=9% Similarity=0.053 Sum_probs=140.1
Q ss_pred CCcCCCceeeecc---------CCCeEeeee-cccccEEEEEECC--CCceeEeccccccccCCCEEEEEeCCCCEEEEe
Q psy6442 1 MCVDGKPMLRQGD---------TGDWIGTFE-GHKGCVWGVDINK--DASKAASGAADFQAKNNTRLISCAEDKTVRLWD 68 (231)
Q Consensus 1 ~~~d~~~~~~~~~---------~g~~i~~l~-gH~~~V~~~~~~~--~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd 68 (231)
++.|+++++|+.. +++.+..+. +|.+.|.++.|+| + +..+++++.|++|++||
T Consensus 91 ~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------~~~l~s~s~dg~i~~wd 155 (343)
T 3lrv_A 91 RGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVN---------------TEYFIWADNRGTIGFQS 155 (343)
T ss_dssp ECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC------------------CCEEEEEETTCCEEEEE
T ss_pred ecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCC---------------CCEEEEEeCCCcEEEEE
Confidence 4689999999654 666566655 7889999999999 6 45689999999999999
Q ss_pred CCCCCceEEEE--eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceE-Eeeec--cceeEEEEEEecCCCCEEEEec
Q psy6442 69 VSASAEVQKLE--FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELI-KEHKV--PAQVHSASLLLNSERPIFVCGG 142 (231)
Q Consensus 69 ~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~g~ 142 (231)
+.++++..... ....+.+++|+|++..+++ +.++.|++||.++.+.+ ..+.. ..++..+.+ +|++..+++++
T Consensus 156 ~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~f--s~~g~~l~s~~ 233 (343)
T 3lrv_A 156 YEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKF--ADNGYWMVVEC 233 (343)
T ss_dssp SSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEE--CTTSSEEEEEE
T ss_pred CCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEE--eCCCCEEEEEe
Confidence 99988865543 2346899999999998887 46889999999988766 55554 345655554 89999999999
Q ss_pred CCCeEEEEeCCCcceeeeccC---CCCCee--EEEEcCCCCEEEEeeC-CCcEEEEeCCCCC
Q psy6442 143 EDLKMYKFDYSTGAEIESFKG---HFGPIH--CVKFSPDGELYASGSE-DGTLRLWQTNVGK 198 (231)
Q Consensus 143 ~d~~i~~~d~~~~~~~~~~~~---h~~~V~--~v~~spd~~~laS~s~-d~~v~iwd~~~~~ 198 (231)
.+ .|++||+++++.+..+.. |..++. +++|+|++++|++++. |+.|+||++..++
T Consensus 234 ~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 234 DQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp SS-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred CC-eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 55 999999998876555443 555555 5999999999999998 9999999986654
No 95
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.92 E-value=1.7e-23 Score=177.06 Aligned_cols=195 Identities=16% Similarity=0.238 Sum_probs=156.4
Q ss_pred CCcCCCceeeeccC----------CCeEeeeecccccEEEEEECCCCc-eeEeccccccc--------------------
Q psy6442 1 MCVDGKPMLRQGDT----------GDWIGTFEGHKGCVWGVDINKDAS-KAASGAADFQA-------------------- 49 (231)
Q Consensus 1 ~~~d~~~~~~~~~~----------g~~i~~l~gH~~~V~~~~~~~~~~-~~~s~~~d~~~-------------------- 49 (231)
++.||+|++|+..+ ++.+.++.+|.+.|++++|+|++. .+++++.|..+
T Consensus 147 ~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 226 (430)
T 2xyi_A 147 KTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI 226 (430)
T ss_dssp ECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEE
T ss_pred ECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceecccee
Confidence 36799999999976 678889999999999999999987 88888654211
Q ss_pred ---------------cCCCEEEEEeCCCCEEEEeCCCC---CceEEEE-eCCcceeEEEccCCCE-EEE-EcCCeEEEEE
Q psy6442 50 ---------------KNNTRLISCAEDKTVRLWDVSAS---AEVQKLE-FGAVPNSLEISRDGTT-ITV-THGSCVTFLD 108 (231)
Q Consensus 50 ---------------~~~~~l~s~s~D~ti~iwd~~~~---~~~~~~~-~~~~~~~v~~~~~~~~-~~~-~~~~~i~~~d 108 (231)
.++..|++++.|++|++||++.+ +....+. +...+.+++|+|++.. +++ +.++.|++||
T Consensus 227 ~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd 306 (430)
T 2xyi_A 227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306 (430)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEe
Confidence 14578999999999999999977 4555553 5678999999999873 433 5678999999
Q ss_pred CCC-cceEEeeec-cceeEEEEEEecCCC-CEEEEecCCCeEEEEeCCC--------------cceeeeccCCCCCeeEE
Q psy6442 109 ANS-LELIKEHKV-PAQVHSASLLLNSER-PIFVCGGEDLKMYKFDYST--------------GAEIESFKGHFGPIHCV 171 (231)
Q Consensus 109 ~~~-~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~g~~d~~i~~~d~~~--------------~~~~~~~~~h~~~V~~v 171 (231)
.+. ...+..+.. ...+..+.+ +|++ .++++++.|++|++||+.. .+.+..+.+|...|+++
T Consensus 307 ~~~~~~~~~~~~~h~~~v~~i~~--sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 384 (430)
T 2xyi_A 307 LRNLKLKLHSFESHKDEIFQVQW--SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF 384 (430)
T ss_dssp TTCTTSCSEEEECCSSCEEEEEE--CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEE
T ss_pred CCCCCCCeEEeecCCCCEEEEEE--CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEE
Confidence 987 344444443 335555544 7777 4789999999999999976 35677788999999999
Q ss_pred EEcCCCC-EEEEeeCCCcEEEEeCCCC
Q psy6442 172 KFSPDGE-LYASGSEDGTLRLWQTNVG 197 (231)
Q Consensus 172 ~~spd~~-~laS~s~d~~v~iwd~~~~ 197 (231)
+|+|++. +|++++.|+.|+||++...
T Consensus 385 ~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 385 SWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9999998 9999999999999998653
No 96
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.92 E-value=2.2e-23 Score=176.56 Aligned_cols=212 Identities=21% Similarity=0.371 Sum_probs=166.4
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-------------------------CCCEE
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-------------------------NNTRL 55 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-------------------------~~~~l 55 (231)
++.||+|++|+..+++.+.++.+|.+.|.++.|+ ++.+++++.|..+. ++..+
T Consensus 175 ~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l 252 (445)
T 2ovr_B 175 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRV 252 (445)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCE
T ss_pred EeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEE
Confidence 4679999999999999999999999999999995 45688877654321 57789
Q ss_pred EEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccc-eeEEEEEEec
Q psy6442 56 ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPA-QVHSASLLLN 132 (231)
Q Consensus 56 ~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~ 132 (231)
++++.|++|++||+.+++++..+. +...+.++.+ ++..+++ +.++.+++||..+.+.+..+..+. .+..+.
T Consensus 253 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~---- 326 (445)
T 2ovr_B 253 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME---- 326 (445)
T ss_dssp EEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE----
T ss_pred EEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEE----
Confidence 999999999999999988887775 4567788888 5666554 568999999999888777665433 333322
Q ss_pred CCCCEEEEecCCCeEEEEeCCCcceeeeccC---CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec----
Q psy6442 133 SERPIFVCGGEDLKMYKFDYSTGAEIESFKG---HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC---- 205 (231)
Q Consensus 133 ~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~---h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~---- 205 (231)
.++..+++++.|+.|++||+.+++.+..+.+ |..+|.+++|+ +++|++++.||.|+|||+.+++....+..
T Consensus 327 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 404 (445)
T 2ovr_B 327 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 404 (445)
T ss_dssp EETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTG
T ss_pred EeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccC
Confidence 2466899999999999999999998888876 88999999996 57999999999999999999998776631
Q ss_pred cCCcccCCCCCCccccc
Q psy6442 206 IEGGLNNSLGLDSSGHL 222 (231)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ 222 (231)
........+++.++|.+
T Consensus 405 ~~~~~v~~~~~s~~~~~ 421 (445)
T 2ovr_B 405 GSGGVVWRIRASNTKLV 421 (445)
T ss_dssp GGTCEEEEEEECSSEEE
T ss_pred CCCceEEEEEecCCEEE
Confidence 12333444555555443
No 97
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.6e-24 Score=194.70 Aligned_cols=181 Identities=12% Similarity=0.115 Sum_probs=149.6
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF 80 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~ 80 (231)
++.||+|+||+..+++.+..+. |.+.|.++.|+| ++ +|++++.|++|++||+.+++++..+.+
T Consensus 35 gs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~---------------~L~S~s~D~~v~lWd~~~~~~~~~~~~ 97 (902)
T 2oaj_A 35 ATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GI---------------YLVVINAKDTVYVLSLYSQKVLTTVFV 97 (902)
T ss_dssp EETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TT---------------EEEEEETTCEEEEEETTTCSEEEEEEC
T ss_pred EeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CC---------------EEEEEECcCeEEEEECCCCcEEEEEcC
Confidence 4679999999988887776654 889999999998 43 589999999999999999999888887
Q ss_pred CCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEe-----------ee-ccceeEEEEEEecCC-CCEEEEecCCCe
Q psy6442 81 GAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKE-----------HK-VPAQVHSASLLLNSE-RPIFVCGGEDLK 146 (231)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~-~~~~~~g~~d~~ 146 (231)
...+.+++|+|++..++++ .++.+++||......... .. ...++..+.+ +|+ ...+++|+.|+.
T Consensus 98 ~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~--sp~~~~~l~~g~~dg~ 175 (902)
T 2oaj_A 98 PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQW--NPRDIGTVLISYEYVT 175 (902)
T ss_dssp SSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEE--ETTEEEEEEEECSSCE
T ss_pred CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEE--ccCCCCEEEEEeCCCc
Confidence 8889999999999988765 578999999987664311 01 1124555554 664 467889999999
Q ss_pred EEEEeCCCcceeeeccCC------------------CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeee
Q psy6442 147 MYKFDYSTGAEIESFKGH------------------FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYG 201 (231)
Q Consensus 147 i~~~d~~~~~~~~~~~~h------------------~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~ 201 (231)
| +||+++++.+..+.+| ...|++++|+|+|.+|++++.|++|+|||+++++...
T Consensus 176 v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 176 L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 9 9999998888777665 5789999999999999999999999999999988764
No 98
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.92 E-value=6.5e-23 Score=170.33 Aligned_cols=200 Identities=16% Similarity=0.198 Sum_probs=162.3
Q ss_pred CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG 81 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~ 81 (231)
+.|++|++|+..+++++..+.+|.. +.++.|+|+++.+ +++++.|++|++||+.+++.+..+...
T Consensus 9 ~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l--------------~~~~~~d~~i~v~d~~~~~~~~~~~~~ 73 (391)
T 1l0q_A 9 SESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKV--------------YVANAHSNDVSIIDTATNNVIATVPAG 73 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEE--------------EEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred CCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEE--------------EEECCCCCeEEEEECCCCeEEEEEECC
Confidence 6799999999999999999998755 8999999986542 467889999999999999998888888
Q ss_pred CcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEE-EEecCCCeEEEEeCCCccee
Q psy6442 82 AVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIF-VCGGEDLKMYKFDYSTGAEI 158 (231)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~~~d~~~~~~~ 158 (231)
..+..++++|+++.++++. ++.+.+||..+.+.+.....+..+..+. +++++..+ ++++.++.|++||+.+++.+
T Consensus 74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~--~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 151 (391)
T 1l0q_A 74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLA--LSPDGKKLYVTNNGDKTVSVINTVTKAVI 151 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEE--ECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEE--ECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 8999999999999876543 5899999999888877766655554444 48888866 78888999999999999888
Q ss_pred eeccCCCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccc
Q psy6442 159 ESFKGHFGPIHCVKFSPDGELY-ASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGH 221 (231)
Q Consensus 159 ~~~~~h~~~V~~v~~spd~~~l-aS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (231)
..+..|. .+.+++|+|++++| ++++.|+.|++||+++++....... ......+++.++|.
T Consensus 152 ~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~ 212 (391)
T 1l0q_A 152 NTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV--EAAPSGIAVNPEGT 212 (391)
T ss_dssp EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSEEEEEEECTTSS
T ss_pred EEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec--CCCccceEECCCCC
Confidence 8887664 56999999999876 7888999999999999987766653 23334455555543
No 99
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.92 E-value=1.5e-23 Score=177.36 Aligned_cols=190 Identities=17% Similarity=0.243 Sum_probs=151.6
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc----------------------------CC
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK----------------------------NN 52 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~----------------------------~~ 52 (231)
++.||+|++|+..+++.+.++.+|.+.|.++.|++ +.+++++.|..+. ++
T Consensus 189 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 266 (435)
T 1p22_A 189 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD 266 (435)
T ss_dssp EETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET
T ss_pred EcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCC
Confidence 46799999999999999999999999999999975 4778776653221 56
Q ss_pred CEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEE-EEcCCeEEEEECCCcceEEeeecc-ceeEEEEE
Q psy6442 53 TRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTIT-VTHGSCVTFLDANSLELIKEHKVP-AQVHSASL 129 (231)
Q Consensus 53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~ 129 (231)
..|++++.|++|++||+.+++.+..+. +...+.++++. +..++ .+.++.+++||..+.+.+..+..+ ..+..+.+
T Consensus 267 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 344 (435)
T 1p22_A 267 KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 344 (435)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC
T ss_pred CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe
Confidence 789999999999999999999888876 45667788774 45554 456889999999988887776543 34444433
Q ss_pred EecCCCCEEEEecCCCeEEEEeCCCcc---------eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442 130 LLNSERPIFVCGGEDLKMYKFDYSTGA---------EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY 200 (231)
Q Consensus 130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~---------~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~ 200 (231)
++..+++|+.|+.|++||+.++. .+..+.+|.++|.+++| ++.+|++++.||+|+|||+.+....
T Consensus 345 ----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 345 ----DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp ----CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------
T ss_pred ----cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCc
Confidence 67889999999999999997665 78889999999999999 7789999999999999999887644
No 100
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=8.1e-24 Score=190.83 Aligned_cols=183 Identities=25% Similarity=0.341 Sum_probs=147.8
Q ss_pred CCcCCCceeeecc--CCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC--ceE
Q psy6442 1 MCVDGKPMLRQGD--TGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA--EVQ 76 (231)
Q Consensus 1 ~~~d~~~~~~~~~--~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~--~~~ 76 (231)
++.||+|++|+.. +++.+.++.+|.+.|.+++|+++. ++..|++++.||+|++||+.+++ ...
T Consensus 27 g~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~-------------~~~~l~s~s~Dg~I~vwd~~~~~~~~~~ 93 (753)
T 3jro_A 27 CSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-------------FGTILASCSYDGKVLIWKEENGRWSQIA 93 (753)
T ss_dssp EETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT-------------SCSEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred EECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC-------------CCCEEEEEeCCCeEEEEECCCCcccccc
Confidence 4679999999987 667899999999999999999862 24568999999999999999876 333
Q ss_pred EEE-eCCcceeEEEccC--CCEEEE-EcCCeEEEEECCCcceEEe--e-eccceeEEEEEEecC-------------CCC
Q psy6442 77 KLE-FGAVPNSLEISRD--GTTITV-THGSCVTFLDANSLELIKE--H-KVPAQVHSASLLLNS-------------ERP 136 (231)
Q Consensus 77 ~~~-~~~~~~~v~~~~~--~~~~~~-~~~~~i~~~d~~~~~~~~~--~-~~~~~~~~~~~~~~~-------------~~~ 136 (231)
.+. +...+.+++|+|+ +..+++ +.++.+++||......... . ..+..+..+.+ +| ++.
T Consensus 94 ~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~--~p~~~~~~~~~~~~~d~~ 171 (753)
T 3jro_A 94 VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW--APATIEEDGEHNGTKESR 171 (753)
T ss_dssp EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEE--CCCC---------CGGGC
T ss_pred cccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEe--cCcccccccccccCCCCC
Confidence 333 4578999999998 777665 5678999999887633222 1 22334555444 55 578
Q ss_pred EEEEecCCCeEEEEeCCCc----ceeeeccCCCCCeeEEEEcCC---CCEEEEeeCCCcEEEEeCCCCC
Q psy6442 137 IFVCGGEDLKMYKFDYSTG----AEIESFKGHFGPIHCVKFSPD---GELYASGSEDGTLRLWQTNVGK 198 (231)
Q Consensus 137 ~~~~g~~d~~i~~~d~~~~----~~~~~~~~h~~~V~~v~~spd---~~~laS~s~d~~v~iwd~~~~~ 198 (231)
.+++|+.|+.|++||++++ .....+.+|..+|++++|+|+ +.+|++++.|++|+|||+.+++
T Consensus 172 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 8999999999999999776 456778899999999999999 8999999999999999998874
No 101
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.92 E-value=1.6e-23 Score=177.26 Aligned_cols=193 Identities=11% Similarity=0.132 Sum_probs=142.2
Q ss_pred CCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE---eCCcceeEEEc
Q psy6442 14 TGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE---FGAVPNSLEIS 90 (231)
Q Consensus 14 ~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~---~~~~~~~v~~~ 90 (231)
..++.....+|...|.+++|+|.. +..|++|+.||+|+|||+..++....+. +...|.+++|+
T Consensus 108 ~~~~~~~~~~~~~~V~~l~~~P~~--------------~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~ 173 (435)
T 4e54_B 108 SYRILQKAAPFDRRATSLAWHPTH--------------PSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFN 173 (435)
T ss_dssp TTTSCCEEEECSSCEEEEEECSSC--------------TTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEEC
T ss_pred ceeecccCCCCCCCEEEEEEeCCC--------------CCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEe
Confidence 345566778899999999999852 4468999999999999998877655554 45789999999
Q ss_pred c-CCCEEEE-EcCCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCC
Q psy6442 91 R-DGTTITV-THGSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGP 167 (231)
Q Consensus 91 ~-~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~ 167 (231)
| ++..++. +.+++|++||............. ......++.+++++.++++|+.|+.|++||++ ++.+..+.+|..+
T Consensus 174 p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~ 252 (435)
T 4e54_B 174 PLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKK 252 (435)
T ss_dssp SSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSC
T ss_pred CCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccce
Confidence 8 5666654 46889999998765432222211 12222334458899999999999999999985 4667888999999
Q ss_pred eeEEEEcCCCC-EEEEeeCCCcEEEEeCCCCCeeeeeeccC--CcccCCCCCCcccc
Q psy6442 168 IHCVKFSPDGE-LYASGSEDGTLRLWQTNVGKTYGLWKCIE--GGLNNSLGLDSSGH 221 (231)
Q Consensus 168 V~~v~~spd~~-~laS~s~d~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 221 (231)
|.+++|+|++. +|++++.|++|+|||+++++......... ......++|.++|.
T Consensus 253 v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~ 309 (435)
T 4e54_B 253 VTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA 309 (435)
T ss_dssp EEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS
T ss_pred EEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC
Confidence 99999999875 78999999999999998877544332211 12233455555543
No 102
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.92 E-value=1.3e-23 Score=172.75 Aligned_cols=195 Identities=14% Similarity=0.174 Sum_probs=153.4
Q ss_pred CCcCCCceeeeccCCCeEee--eecccccEEEEEECCCCceeEeccccccc-----------------------------
Q psy6442 1 MCVDGKPMLRQGDTGDWIGT--FEGHKGCVWGVDINKDASKAASGAADFQA----------------------------- 49 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~--l~gH~~~V~~~~~~~~~~~~~s~~~d~~~----------------------------- 49 (231)
++.||+|++|+..+++.... +.+|.+.|.++.|+|+++.+++++.+..+
T Consensus 70 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~ 149 (372)
T 1k8k_C 70 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD 149 (372)
T ss_dssp EETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE
T ss_pred EcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEE
Confidence 36799999999998886554 46899999999999999999988765321
Q ss_pred --cCCCEEEEEeCCCCEEEEeCC------------------CCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEE
Q psy6442 50 --KNNTRLISCAEDKTVRLWDVS------------------ASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFL 107 (231)
Q Consensus 50 --~~~~~l~s~s~D~ti~iwd~~------------------~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~ 107 (231)
.++..|++++.|++|++||+. .++.+..+. +...+.+++|+|++..+++ +.++.+++|
T Consensus 150 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 229 (372)
T 1k8k_C 150 WHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA 229 (372)
T ss_dssp ECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred EcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 156789999999999999964 455555553 4567899999999987765 467899999
Q ss_pred ECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCC--cc----------------------------
Q psy6442 108 DANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYST--GA---------------------------- 156 (231)
Q Consensus 108 d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~--~~---------------------------- 156 (231)
|..+.+.+..+..+. ++..+.+ ++++.+++++ .|+.|++|++.. +.
T Consensus 230 d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (372)
T 1k8k_C 230 DADKKMAVATLASETLPLLAVTF--ITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD 306 (372)
T ss_dssp EGGGTTEEEEEECSSCCEEEEEE--EETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCC
T ss_pred ECCCCceeEEEccCCCCeEEEEE--ecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcc
Confidence 999888877766543 5555555 6788888877 899999999877 32
Q ss_pred ----ee------eec-cCCCCCeeEEEEc-CCC---CEEEEeeCCCcEEEEeCCCCC
Q psy6442 157 ----EI------ESF-KGHFGPIHCVKFS-PDG---ELYASGSEDGTLRLWQTNVGK 198 (231)
Q Consensus 157 ----~~------~~~-~~h~~~V~~v~~s-pd~---~~laS~s~d~~v~iwd~~~~~ 198 (231)
.. ..+ .+|..+|++++|+ +++ .+|+|++.||.|+||++.+++
T Consensus 307 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 307 KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 00 233 4899999999966 666 999999999999999987654
No 103
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.92 E-value=3.2e-23 Score=181.08 Aligned_cols=182 Identities=19% Similarity=0.220 Sum_probs=151.0
Q ss_pred cCCCceeeeccCC----CeEeeeeccccc-EEEEEECC--CCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC---
Q psy6442 3 VDGKPMLRQGDTG----DWIGTFEGHKGC-VWGVDINK--DASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS--- 72 (231)
Q Consensus 3 ~d~~~~~~~~~~g----~~i~~l~gH~~~-V~~~~~~~--~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~--- 72 (231)
.|+.+++|+..++ +.+..+.+|.+. |.+++|+| ++ +.|++++.|++|++||+.++
T Consensus 37 ~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~---------------~~l~s~~~dg~v~vw~~~~~~~~ 101 (615)
T 1pgu_A 37 CGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS---------------QYLCSGDESGKVIVWGWTFDKES 101 (615)
T ss_dssp ETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTC---------------CEEEEEETTSEEEEEEEEEEGGG
T ss_pred cCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCC---------------CEEEEecCCCEEEEEeCCCCccc
Confidence 3789999999999 899999999999 99999999 74 45899999999999999754
Q ss_pred -----CceEEEE-eCCcceeEEEccCCCEEEEEcC-----CeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCC-EEE
Q psy6442 73 -----AEVQKLE-FGAVPNSLEISRDGTTITVTHG-----SCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERP-IFV 139 (231)
Q Consensus 73 -----~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~-----~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~ 139 (231)
+....+. +...+.+++|+|+++.+++... +.+.+|| ..+.+.....+ ..+..+.+ +|++. .++
T Consensus 102 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~ 177 (615)
T 1pgu_A 102 NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHL--KQSRPMRSM 177 (615)
T ss_dssp TEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEE--CSSSSCEEE
T ss_pred ccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEE--CCCCCcEEE
Confidence 3444444 4678999999999998876543 4777787 33444444332 34554444 78887 799
Q ss_pred EecCCCeEEEEeCCCcceeeeccCCCC---CeeEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442 140 CGGEDLKMYKFDYSTGAEIESFKGHFG---PIHCVKFSPD-GELYASGSEDGTLRLWQTNVGKTYGLW 203 (231)
Q Consensus 140 ~g~~d~~i~~~d~~~~~~~~~~~~h~~---~V~~v~~spd-~~~laS~s~d~~v~iwd~~~~~~~~~~ 203 (231)
+++.|+.|++||..+++.+..+.+|.. +|.+++|+|+ +++|++++.|+.|++||+.+++....+
T Consensus 178 ~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 245 (615)
T 1pgu_A 178 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI 245 (615)
T ss_dssp EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred EEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence 999999999999999999999999999 9999999999 999999999999999999999987766
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4e-23 Score=169.96 Aligned_cols=187 Identities=14% Similarity=0.166 Sum_probs=146.0
Q ss_pred CCcCCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE
Q psy6442 1 MCVDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL 78 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~ 78 (231)
++.||+|++|+..+++ .+..+.+|.+.|.++.|+|+. .+..|++++.|++|++||+..+......
T Consensus 75 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 141 (379)
T 3jrp_A 75 CSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE-------------YGPLLLVASSDGKVSVVEFKENGTTSPI 141 (379)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-------------GCSEEEEEETTSEEEEEECCTTSCCCEE
T ss_pred eccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCC-------------CCCEEEEecCCCcEEEEecCCCCceeeE
Confidence 3679999999999997 788899999999999999961 1346899999999999999887443332
Q ss_pred ---EeCCcceeEEEcc-------------CCCEEEE-EcCCeEEEEECCCcceE----Eeeec-cceeEEEEEEecCC--
Q psy6442 79 ---EFGAVPNSLEISR-------------DGTTITV-THGSCVTFLDANSLELI----KEHKV-PAQVHSASLLLNSE-- 134 (231)
Q Consensus 79 ---~~~~~~~~v~~~~-------------~~~~~~~-~~~~~i~~~d~~~~~~~----~~~~~-~~~~~~~~~~~~~~-- 134 (231)
.+...+.+++|+| ++..+++ +.++.+++||.+..... ..... ...+..+.+ +|+
T Consensus 142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~--sp~~~ 219 (379)
T 3jrp_A 142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW--SPTVL 219 (379)
T ss_dssp EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE--CCCCS
T ss_pred EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEE--CCCCC
Confidence 2456789999999 5776665 46789999998754432 22222 234554444 888
Q ss_pred -CCEEEEecCCCeEEEEeCCCcc-----eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442 135 -RPIFVCGGEDLKMYKFDYSTGA-----EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL 202 (231)
Q Consensus 135 -~~~~~~g~~d~~i~~~d~~~~~-----~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~ 202 (231)
+..+++++.|+.|++||+.++. .+.....|...|.+++|+|++++|++++.|+.|+||++..+..+..
T Consensus 220 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 293 (379)
T 3jrp_A 220 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEP 293 (379)
T ss_dssp SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEE
T ss_pred CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcccc
Confidence 8899999999999999998763 2333445889999999999999999999999999999986655443
No 105
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.92 E-value=2.6e-23 Score=195.86 Aligned_cols=193 Identities=24% Similarity=0.409 Sum_probs=165.4
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCC--CceeEeccccccc---------------------------cC
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD--ASKAASGAADFQA---------------------------KN 51 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~--~~~~~s~~~d~~~---------------------------~~ 51 (231)
++.||+|++|+..+|+.+.++.+|.+.|.++.|+|+ +..+++++.|..+ .+
T Consensus 675 ~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~ 754 (1249)
T 3sfz_A 675 CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD 754 (1249)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSS
T ss_pred EeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecC
Confidence 367999999999999999999999999999999994 4577887765322 16
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCceEEEEeC--------------CcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEe
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAEVQKLEFG--------------AVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKE 117 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 117 (231)
+..|++++.|++|++||+.+++....+... ..+.+++|+|++..++++.++.+.+||..+......
T Consensus 755 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~ 834 (1249)
T 3sfz_A 755 DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 834 (1249)
T ss_dssp TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE
T ss_pred CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE
Confidence 789999999999999999988776666432 257788999999999888889999999998887766
Q ss_pred eecc--ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442 118 HKVP--AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN 195 (231)
Q Consensus 118 ~~~~--~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~ 195 (231)
.... ..+..+ .++|++..+++++.++.|++||..++..+..+.+|..+|.+++|+|++++|++++.|++|++|++.
T Consensus 835 ~~~~~~~~v~~~--~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 835 IHTGHHSTIQYC--DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp EECSSSSCCCEE--EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred EcCCCCCceEEE--EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 5432 344444 448899999999999999999999999999999999999999999999999999999999999965
No 106
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.92 E-value=5.8e-22 Score=164.59 Aligned_cols=201 Identities=17% Similarity=0.168 Sum_probs=163.0
Q ss_pred CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecc-ccccc--------------------------cCCCE
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGA-ADFQA--------------------------KNNTR 54 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~-~d~~~--------------------------~~~~~ 54 (231)
+.|++|++|+..+|+.+..+..|. .|.++.|+|+++.++.++ .+..+ .+++.
T Consensus 51 ~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~ 129 (391)
T 1l0q_A 51 AHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKK 129 (391)
T ss_dssp GGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSE
T ss_pred CCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCE
Confidence 468999999999999999988665 899999999998775433 32211 15666
Q ss_pred E-EEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE--cCCeEEEEECCCcceEEeeeccceeEEEEEEe
Q psy6442 55 L-ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDANSLELIKEHKVPAQVHSASLLL 131 (231)
Q Consensus 55 l-~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 131 (231)
| ++++.|++|++||+.+++.+..+.....+..++++|++..++++ .++.+.+||..+.+..........+..+ .+
T Consensus 130 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~--~~ 207 (391)
T 1l0q_A 130 LYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGI--AV 207 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEE--EE
T ss_pred EEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccce--EE
Confidence 6 78888999999999999888888877788999999999987543 4579999999988777766655545444 44
Q ss_pred cCCCCEEEEec---CCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeCCCCCeeeeeecc
Q psy6442 132 NSERPIFVCGG---EDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELY-ASGSEDGTLRLWQTNVGKTYGLWKCI 206 (231)
Q Consensus 132 ~~~~~~~~~g~---~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~l-aS~s~d~~v~iwd~~~~~~~~~~~~~ 206 (231)
++++..+++++ .++.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++....+...
T Consensus 208 ~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp CTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred CCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence 88888888777 68999999999998888887765 47899999999876 78889999999999999988776543
No 107
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.91 E-value=4.8e-24 Score=176.32 Aligned_cols=177 Identities=11% Similarity=0.091 Sum_probs=133.6
Q ss_pred CCcCCCceeeeccCCC---eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc---
Q psy6442 1 MCVDGKPMLRQGDTGD---WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE--- 74 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~---~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~--- 74 (231)
++.||+|++|+..+++ .+..+.+|.+.|.++.|+|+++ .|++++.|++|++||+..++.
T Consensus 73 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------~l~~~~~d~~i~iwd~~~~~~~~~ 137 (377)
T 3dwl_C 73 CSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED---------------KFAVGSGARVISVCYFEQENDWWV 137 (377)
T ss_dssp EETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS---------------CCEEEESSSCEEECCC-----CCC
T ss_pred EeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC---------------EEEEEecCCeEEEEEECCccccee
Confidence 3679999999999887 6777889999999999999754 578999999999999998763
Q ss_pred eEEEE--eCCcceeEEEccCCCEEEE-EcCCeEEEEECCC------------------cceEEeeeccceeEEEEEEecC
Q psy6442 75 VQKLE--FGAVPNSLEISRDGTTITV-THGSCVTFLDANS------------------LELIKEHKVPAQVHSASLLLNS 133 (231)
Q Consensus 75 ~~~~~--~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 133 (231)
...+. +...+.+++|+|++..++. +.++.+++||... ...+..+.....+..+. ++|
T Consensus 138 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~sp 215 (377)
T 3dwl_C 138 SKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVG--FSP 215 (377)
T ss_dssp CEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEE--ECT
T ss_pred eeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEE--ECC
Confidence 55554 5678999999999987765 4678999999752 22333332223444444 489
Q ss_pred CCCEEEEecCCCeEEEEeCCCcce----eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442 134 ERPIFVCGGEDLKMYKFDYSTGAE----IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN 195 (231)
Q Consensus 134 ~~~~~~~g~~d~~i~~~d~~~~~~----~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~ 195 (231)
++.++++++.|+.|++||+.+++. +..+.+|..+|.+++|+|++++|++++.++.+ +|+..
T Consensus 216 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 216 SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp TSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 999999999999999999998877 78889999999999999999999999877766 66654
No 108
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.91 E-value=1.2e-23 Score=183.90 Aligned_cols=211 Identities=15% Similarity=0.220 Sum_probs=161.8
Q ss_pred CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc---------------------cCCCEEEEEeC
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA---------------------KNNTRLISCAE 60 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~---------------------~~~~~l~s~s~ 60 (231)
+.||++++|+..+++.+..+.+|.+.|.++.| |+ +++++.|..+ .++..|++++.
T Consensus 316 ~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 391 (615)
T 1pgu_A 316 SLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISW 391 (615)
T ss_dssp ETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEET
T ss_pred ECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeC
Confidence 57899999999999999999999999999999 77 6666554321 23677888888
Q ss_pred CCCEEEEeCC----------------------------------CCCceEEEEeCCcceeEEEccCCCEEEE-Ec-CCeE
Q psy6442 61 DKTVRLWDVS----------------------------------ASAEVQKLEFGAVPNSLEISRDGTTITV-TH-GSCV 104 (231)
Q Consensus 61 D~ti~iwd~~----------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~-~~~i 104 (231)
|++|++||+. .++.+..+.+...+.+++++ +..+++ .. ++.+
T Consensus 392 d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i 469 (615)
T 1pgu_A 392 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTI 469 (615)
T ss_dssp TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCE
T ss_pred CCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeE
Confidence 8888888765 44455555666778888888 555554 45 7899
Q ss_pred EEEECCCcceE-Eeee-ccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccC-CCCCeeEEEEcC------
Q psy6442 105 TFLDANSLELI-KEHK-VPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG-HFGPIHCVKFSP------ 175 (231)
Q Consensus 105 ~~~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~-h~~~V~~v~~sp------ 175 (231)
++||....... .... ....+..+. ++|++.++++++.|+.|++||+.+++.+..+.+ |..+|++++|+|
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~ 547 (615)
T 1pgu_A 470 QVFKLSDLEVSFDLKTPLRAKPSYIS--ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGAN 547 (615)
T ss_dssp EEEETTEEEEEEECSSCCSSCEEEEE--ECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC----
T ss_pred EEEECCCccccccccCCccCceEEEE--ECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccc
Confidence 99999876554 2222 223454444 489999999999999999999999999999988 999999999999
Q ss_pred ----CCCEEEEeeCCCcEEEEeCCCC-CeeeeeeccCCcccCCCCCCcccc
Q psy6442 176 ----DGELYASGSEDGTLRLWQTNVG-KTYGLWKCIEGGLNNSLGLDSSGH 221 (231)
Q Consensus 176 ----d~~~laS~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 221 (231)
++++|++++.|++|+|||+.++ +....++... .....++|.++|.
T Consensus 548 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~ 597 (615)
T 1pgu_A 548 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK-DGVNNLLWETPST 597 (615)
T ss_dssp --CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSST-TCEEEEEEEETTE
T ss_pred ccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCc-cceEEEEEcCCCC
Confidence 9999999999999999999988 5665555432 2233444544443
No 109
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.91 E-value=1.8e-22 Score=169.86 Aligned_cols=216 Identities=16% Similarity=0.209 Sum_probs=170.4
Q ss_pred CcCCCceeeeccCCCeEe-----eeecccccEEEEEECCCCceeEecccccccc--------------------------
Q psy6442 2 CVDGKPMLRQGDTGDWIG-----TFEGHKGCVWGVDINKDASKAASGAADFQAK-------------------------- 50 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~-----~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-------------------------- 50 (231)
+.|++|++|+..+|+.+. .+.+|.+.|+++.|++++..+++++.+..+.
T Consensus 141 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 220 (433)
T 3bws_A 141 LEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYD 220 (433)
T ss_dssp TTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEE
T ss_pred CCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEc
Confidence 467899999999999888 5679999999999999999998886643221
Q ss_pred -CCCEE-EEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc---------CCeEEEEECCCcceEEeee
Q psy6442 51 -NNTRL-ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH---------GSCVTFLDANSLELIKEHK 119 (231)
Q Consensus 51 -~~~~l-~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------~~~i~~~d~~~~~~~~~~~ 119 (231)
++..+ ++++.|++|++||+.+++.+..+.....+..++++|++..++++. ++.+.+||..+.+......
T Consensus 221 ~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~ 300 (433)
T 3bws_A 221 PIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG 300 (433)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc
Confidence 45666 455589999999999988877777677789999999998877643 5689999998877766654
Q ss_pred ccceeEEEEEEecCCCC-EEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeC-------------
Q psy6442 120 VPAQVHSASLLLNSERP-IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSE------------- 185 (231)
Q Consensus 120 ~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~------------- 185 (231)
.+..+..+. ++|++. ++++++.++.|++||..+++.+..+. +...+.+++|+|++++|++++.
T Consensus 301 ~~~~~~~~~--~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g 377 (433)
T 3bws_A 301 PPGNKRHIV--SGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKG 377 (433)
T ss_dssp EEECEEEEE--ECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCC
T ss_pred CCCCcceEE--ECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCcccccccccc
Confidence 443444433 478886 55677899999999999888877776 7778999999999998888776
Q ss_pred --CCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442 186 --DGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL 222 (231)
Q Consensus 186 --d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (231)
||.|++||+.+++....... ......+++.++|+.
T Consensus 378 ~~dg~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~ 414 (433)
T 3bws_A 378 LVLGKVYVIDTTTDTVKEFWEA--GNQPTGLDVSPDNRY 414 (433)
T ss_dssp SSCCEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSCE
T ss_pred ccceEEEEEECCCCcEEEEecC--CCCCceEEEcCCCCE
Confidence 57999999999998877765 334556666666654
No 110
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.91 E-value=1.1e-22 Score=168.03 Aligned_cols=173 Identities=12% Similarity=0.106 Sum_probs=135.1
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC-CceEEEE
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS-AEVQKLE 79 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~-~~~~~~~ 79 (231)
++.|++|++|+..+|+.+.++. |...|.++.|+++. ++.+ .|++|++||+.++ +.+..+.
T Consensus 77 ~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~-----------------~~~~-~~~~i~i~d~~~~~~~~~~~~ 137 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF-----------------IVVS-YGDVISVFKFGNPWKRITDDI 137 (355)
T ss_dssp CSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE-----------------EEEE-ETTEEEEEESSTTCCBSSCCE
T ss_pred ECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE-----------------EEEE-EcCEEEEEECCCCceeeEEec
Confidence 3568899999999999999987 77899999998752 3333 4889999999987 6555544
Q ss_pred eCCcceeEEEccCCCEEEE---EcCCeEEEEECCCcce----------------EEeeec-cceeEEEEEEecCCCCEEE
Q psy6442 80 FGAVPNSLEISRDGTTITV---THGSCVTFLDANSLEL----------------IKEHKV-PAQVHSASLLLNSERPIFV 139 (231)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~---~~~~~i~~~d~~~~~~----------------~~~~~~-~~~~~~~~~~~~~~~~~~~ 139 (231)
. ....+++++ ..+++ ..++.+++||..+... +..+.. ...+..+.+ +|++.+++
T Consensus 138 ~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~--s~~g~~l~ 211 (355)
T 3vu4_A 138 R--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRL--NRKSDMVA 211 (355)
T ss_dssp E--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEE--CTTSSEEE
T ss_pred c--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEE--CCCCCEEE
Confidence 3 334556666 44444 2468999999886541 233322 234555444 89999999
Q ss_pred EecCCCe-EEEEeCCCcceeeecc-C-CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442 140 CGGEDLK-MYKFDYSTGAEIESFK-G-HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198 (231)
Q Consensus 140 ~g~~d~~-i~~~d~~~~~~~~~~~-~-h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~ 198 (231)
+++.|++ |++||+.+++.+.++. + |.++|++++|+|++++|++++.|++|+|||+..+.
T Consensus 212 s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 212 TCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 9999998 9999999999999998 6 99999999999999999999999999999997664
No 111
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.91 E-value=1.9e-23 Score=176.12 Aligned_cols=182 Identities=15% Similarity=0.203 Sum_probs=141.7
Q ss_pred CCcCCCceeeeccCCCeE---------------------------------------ee-eecccccEEEEEECCCCcee
Q psy6442 1 MCVDGKPMLRQGDTGDWI---------------------------------------GT-FEGHKGCVWGVDINKDASKA 40 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i---------------------------------------~~-l~gH~~~V~~~~~~~~~~~~ 40 (231)
++.||+|++|+..+++.. .. +.+|.+.|.+++|+|+++
T Consensus 113 ~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-- 190 (447)
T 3dw8_B 113 STNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE-- 190 (447)
T ss_dssp EECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSS--
T ss_pred eCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCC--
Confidence 367999999998775542 12 468999999999999754
Q ss_pred EeccccccccCCCEEEEEeCCCCEEEEeCCC-CCceEEE--------EeCCcceeEEEccCC-CEEEE-EcCCeEEEEEC
Q psy6442 41 ASGAADFQAKNNTRLISCAEDKTVRLWDVSA-SAEVQKL--------EFGAVPNSLEISRDG-TTITV-THGSCVTFLDA 109 (231)
Q Consensus 41 ~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~-~~~~~~~--------~~~~~~~~v~~~~~~-~~~~~-~~~~~i~~~d~ 109 (231)
.|+++ .|++|++||+.. ++....+ .+...+.+++|+|++ ..++. +.++.+++||.
T Consensus 191 -------------~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 191 -------------TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp -------------EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred -------------EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 57887 799999999984 3444333 234568999999998 66654 56889999999
Q ss_pred CCcce----EEeeeccc-------------eeEEEEEEecCCCCEEEEecCCCeEEEEeCCC-cceeeeccCCCCC----
Q psy6442 110 NSLEL----IKEHKVPA-------------QVHSASLLLNSERPIFVCGGEDLKMYKFDYST-GAEIESFKGHFGP---- 167 (231)
Q Consensus 110 ~~~~~----~~~~~~~~-------------~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~-~~~~~~~~~h~~~---- 167 (231)
+.... ...+..+. .+..+ .++|++.++++++. +.|++||+.. ++.+..+.+|...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l 333 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDV--KFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKL 333 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEE--EECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEE--EECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccc
Confidence 87765 44444332 44444 44889999999998 9999999987 8888888888642
Q ss_pred -----------eeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeee
Q psy6442 168 -----------IHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYG 201 (231)
Q Consensus 168 -----------V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~ 201 (231)
+..++|+|++.+|++++.|+.|+|||+.+++...
T Consensus 334 ~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 334 CSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp HHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred cccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence 2349999999999999999999999999998763
No 112
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.91 E-value=2.3e-22 Score=163.62 Aligned_cols=215 Identities=11% Similarity=0.068 Sum_probs=150.7
Q ss_pred CCCceeeeccCC---CeEeeeecccccEEEEEECC-------------------------C----CceeEeccccc---c
Q psy6442 4 DGKPMLRQGDTG---DWIGTFEGHKGCVWGVDINK-------------------------D----ASKAASGAADF---Q 48 (231)
Q Consensus 4 d~~~~~~~~~~g---~~i~~l~gH~~~V~~~~~~~-------------------------~----~~~~~s~~~d~---~ 48 (231)
+.+|+||++.++ ++++++++|+.+|..+.+.| + ++.+++++.+. .
T Consensus 62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~ 141 (356)
T 2w18_A 62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLG 141 (356)
T ss_dssp SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEE
T ss_pred cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEe
Confidence 568999999999 89999999998777776666 4 44444444322 1
Q ss_pred ccCCCEEEEEe---CCCCEEEEeCC-CCCceEEEE-eCCcceeEEEcc---CCCEEEE-EcCCeEEEEECCCcceEEeee
Q psy6442 49 AKNNTRLISCA---EDKTVRLWDVS-ASAEVQKLE-FGAVPNSLEISR---DGTTITV-THGSCVTFLDANSLELIKEHK 119 (231)
Q Consensus 49 ~~~~~~l~s~s---~D~ti~iwd~~-~~~~~~~~~-~~~~~~~v~~~~---~~~~~~~-~~~~~i~~~d~~~~~~~~~~~ 119 (231)
+ .+.+++.++ .|++|++|++. +++.+..+. +...+..++|+| ++..++. +.|++|++||..+.+.++++.
T Consensus 142 l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~ 220 (356)
T 2w18_A 142 L-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH 220 (356)
T ss_dssp E-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred c-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc
Confidence 2 234444443 49999999994 466665544 456778889988 5666664 678999999999999888775
Q ss_pred ccc----eeEEEEEEecCCCCEE------------EEecCCCeEEEEeCCCcceeeec-----cCCCCCeeEEEEcCCCC
Q psy6442 120 VPA----QVHSASLLLNSERPIF------------VCGGEDLKMYKFDYSTGAEIESF-----KGHFGPIHCVKFSPDGE 178 (231)
Q Consensus 120 ~~~----~~~~~~~~~~~~~~~~------------~~g~~d~~i~~~d~~~~~~~~~~-----~~h~~~V~~v~~spd~~ 178 (231)
.+. .+.. ..++|++.++ ++|+.|.+|++||..+++.+..+ .+|...+.+..++ +.
T Consensus 221 g~~~~v~~v~~--vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~ 296 (356)
T 2w18_A 221 IDDSYQASVCH--KAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH 296 (356)
T ss_dssp CCC---CCCEE--EEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT
T ss_pred CCCcceeeeEE--EEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CC
Confidence 321 1222 2335666654 67889999999999999877654 4787766555444 88
Q ss_pred EEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccccc
Q psy6442 179 LYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLN 223 (231)
Q Consensus 179 ~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (231)
++|+++.|++|+|||+.+++..++++...+.....++|.++|+.+
T Consensus 297 ~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~L 341 (356)
T 2w18_A 297 CAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHL 341 (356)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEE
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEE
Confidence 999999999999999999999888875544333346677777643
No 113
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.91 E-value=1.3e-22 Score=164.37 Aligned_cols=177 Identities=18% Similarity=0.231 Sum_probs=139.1
Q ss_pred eeeecccccEEEEEECCCCceeEecccccccc---------------------------------CCCEEEEEeCCCCEE
Q psy6442 19 GTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------------NNTRLISCAEDKTVR 65 (231)
Q Consensus 19 ~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------------~~~~l~s~s~D~ti~ 65 (231)
..+++|.+.|.+++|+|+++.+++++.|..++ ++..|++++.|++|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 34689999999999999999999997653221 378999999999999
Q ss_pred EEeCCCCC---------ceEEEE-eCCcceeEEEccC--CCEEEE-EcCCeEEEEECCCcceEEeeec------------
Q psy6442 66 LWDVSASA---------EVQKLE-FGAVPNSLEISRD--GTTITV-THGSCVTFLDANSLELIKEHKV------------ 120 (231)
Q Consensus 66 iwd~~~~~---------~~~~~~-~~~~~~~v~~~~~--~~~~~~-~~~~~i~~~d~~~~~~~~~~~~------------ 120 (231)
+||+..++ ....+. +...+.+++|+|+ +..+++ +.++.+++||..+.+.+..+..
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 99998763 233332 4567899999999 886665 5688999999887664433221
Q ss_pred --cceeEEEEEEecCC---CCEEEEecCCCeEEEEeCCCcce--eeeccCCCCCeeEEEEcCCC----CEEEEeeCCCcE
Q psy6442 121 --PAQVHSASLLLNSE---RPIFVCGGEDLKMYKFDYSTGAE--IESFKGHFGPIHCVKFSPDG----ELYASGSEDGTL 189 (231)
Q Consensus 121 --~~~~~~~~~~~~~~---~~~~~~g~~d~~i~~~d~~~~~~--~~~~~~h~~~V~~v~~spd~----~~laS~s~d~~v 189 (231)
...+..+. ++|+ +..+++++.++.+..|+...+.. +..+.+|..+|++++|+|++ ++|++++.|+.|
T Consensus 165 ~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i 242 (351)
T 3f3f_A 165 NHLQSDFCLS--WCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI 242 (351)
T ss_dssp SCSCCCEEEE--ECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCE
T ss_pred CcccceeEEE--eccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeE
Confidence 12233333 3665 78899999999998888776654 67788999999999999998 899999999999
Q ss_pred EEEeCCCC
Q psy6442 190 RLWQTNVG 197 (231)
Q Consensus 190 ~iwd~~~~ 197 (231)
+|||++.+
T Consensus 243 ~iwd~~~~ 250 (351)
T 3f3f_A 243 RIFKITEK 250 (351)
T ss_dssp EEEEEEEC
T ss_pred EEEeCCCC
Confidence 99999875
No 114
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.91 E-value=5e-23 Score=172.31 Aligned_cols=179 Identities=11% Similarity=-0.024 Sum_probs=128.8
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE- 79 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~- 79 (231)
+|.|++||||+..++..+..+.+|.+.|.+++|+|++. .+|++++.|++|++||+++++......
T Consensus 162 ~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~--------------~~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 162 VGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNP--------------NQLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp EETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEE--------------EEEEEEETTSEEEEEETTCCC-------
T ss_pred EECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCC--------------ceEEecCCCCEEEEEECCCCcccccccc
Confidence 47899999999998988888999999999999999742 358999999999999998775432221
Q ss_pred -------------------------eCCcceeEEEc-cCCCEEEE-EcCCeEEEEECCCcceEEeeecc-----------
Q psy6442 80 -------------------------FGAVPNSLEIS-RDGTTITV-THGSCVTFLDANSLELIKEHKVP----------- 121 (231)
Q Consensus 80 -------------------------~~~~~~~v~~~-~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~----------- 121 (231)
+...+.++.|. |++..++. +.++.+++||.........+...
T Consensus 228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~ 307 (393)
T 4gq1_A 228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLP 307 (393)
T ss_dssp ---CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSC
T ss_pred cCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcc
Confidence 12346677775 78887665 45789999998765433222110
Q ss_pred --------ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442 122 --------AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ 193 (231)
Q Consensus 122 --------~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd 193 (231)
.......+....++.++++|+.|++|++||..++..+..+.+|..+|++++|||||++||+++.+| +.+|.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 308 NVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp SEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred ccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence 000111222234556778899999999999999988888888999999999999999999999877 55554
Q ss_pred C
Q psy6442 194 T 194 (231)
Q Consensus 194 ~ 194 (231)
+
T Consensus 387 L 387 (393)
T 4gq1_A 387 L 387 (393)
T ss_dssp E
T ss_pred E
Confidence 3
No 115
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.90 E-value=7.5e-23 Score=166.59 Aligned_cols=186 Identities=13% Similarity=0.066 Sum_probs=146.2
Q ss_pred CCcCCCceeeeccCCC---eEeeeecccccEEEEEECCCCceeEeccccccccCCC-EEEEEeCCCCEEEEeC-CCCCce
Q psy6442 1 MCVDGKPMLRQGDTGD---WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNT-RLISCAEDKTVRLWDV-SASAEV 75 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~---~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~-~l~s~s~D~ti~iwd~-~~~~~~ 75 (231)
++.||+|++|+..+++ .+..+.+|.+.|.++.|+|++ . .|++++.|++|++||+ ..++..
T Consensus 29 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------~~~l~~~~~dg~i~~wd~~~~~~~~ 93 (342)
T 1yfq_A 29 TSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT---------------DLQIYVGTVQGEILKVDLIGSPSFQ 93 (342)
T ss_dssp EETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS---------------SEEEEEEETTSCEEEECSSSSSSEE
T ss_pred EcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC---------------CcEEEEEcCCCeEEEEEeccCCceE
Confidence 3579999999998887 355567999999999999874 4 5889999999999999 877653
Q ss_pred EEEE--eCCcceeEEEccCCCEEEE-EcCCeEEEEECCC---------cceEEeeeccceeEEEEEEecCCCCEEEEecC
Q psy6442 76 QKLE--FGAVPNSLEISRDGTTITV-THGSCVTFLDANS---------LELIKEHKVPAQVHSASLLLNSERPIFVCGGE 143 (231)
Q Consensus 76 ~~~~--~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 143 (231)
.... +...+.+++|+| +..++. +.++.+++||... .+.+..+..+..+..+.+ ++++ +++++.
T Consensus 94 ~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~--l~~~~~ 168 (342)
T 1yfq_A 94 ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT--NSSR--LIVGMN 168 (342)
T ss_dssp ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE--CSSE--EEEEES
T ss_pred eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEe--cCCc--EEEEeC
Confidence 3333 567889999999 666554 5688999999876 555555544445555444 6665 889999
Q ss_pred CCeEEEEeCCC-cce--eeeccCCCCCeeEEEEcC-CCCEEEEeeCCCcEEEEeCCCC------Ceeeeeecc
Q psy6442 144 DLKMYKFDYST-GAE--IESFKGHFGPIHCVKFSP-DGELYASGSEDGTLRLWQTNVG------KTYGLWKCI 206 (231)
Q Consensus 144 d~~i~~~d~~~-~~~--~~~~~~h~~~V~~v~~sp-d~~~laS~s~d~~v~iwd~~~~------~~~~~~~~~ 206 (231)
++.|++||+.+ +.. ......|..+|.+++|+| ++++|++++.|+.|+||++..+ +....++..
T Consensus 169 d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T 1yfq_A 169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence 99999999987 543 234456889999999999 9999999999999999999887 655666654
No 116
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.90 E-value=4.1e-22 Score=179.96 Aligned_cols=186 Identities=19% Similarity=0.307 Sum_probs=153.5
Q ss_pred CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCC
Q psy6442 16 DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGT 94 (231)
Q Consensus 16 ~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~ 94 (231)
+..++|++|.+.|.+++|+|++ ..|++++.||+|+|||+.+++.+..+. +...+.+++|+|++.
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~---------------~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 68 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTE---------------PWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKN 68 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSS---------------SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGT
T ss_pred ccceeeecCCCceEEEEECCCC---------------CEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCC
Confidence 4567899999999999999985 458899999999999999998888776 567899999999999
Q ss_pred EEEEE-cCCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc-ceeeeccCCCCCeeEE
Q psy6442 95 TITVT-HGSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG-AEIESFKGHFGPIHCV 171 (231)
Q Consensus 95 ~~~~~-~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~-~~~~~~~~h~~~V~~v 171 (231)
.++++ .++.+.+||..+.+.+.....+ ..+..+.+ +|++..+++++.|+.|++||+.++ .....+.+|..+|.++
T Consensus 69 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~ 146 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146 (814)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--CSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEE--eCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEE
Confidence 77664 5789999999988887776543 35555544 899999999999999999999886 6677888999999999
Q ss_pred EEcC-CCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCc
Q psy6442 172 KFSP-DGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDS 218 (231)
Q Consensus 172 ~~sp-d~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (231)
+|+| ++.+|++++.|++|++||+.+++....+..........+.+.+
T Consensus 147 ~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 194 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194 (814)
T ss_dssp EEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECC
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEE
Confidence 9999 8899999999999999999888876666544333334444433
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=9.6e-22 Score=166.99 Aligned_cols=186 Identities=12% Similarity=0.088 Sum_probs=148.6
Q ss_pred CcCCCceeeecc--CCCeEeeee--cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceE-
Q psy6442 2 CVDGKPMLRQGD--TGDWIGTFE--GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQ- 76 (231)
Q Consensus 2 ~~d~~~~~~~~~--~g~~i~~l~--gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~- 76 (231)
+.||+|++|+.. +|+.+..+. +|...|.+++|+|++ ..|++++.|+.|++|++..+....
T Consensus 122 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---------------~~l~~~~~~g~v~~~~~~~~~~~~~ 186 (450)
T 2vdu_B 122 DSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD---------------TTVIIADKFGDVYSIDINSIPEEKF 186 (450)
T ss_dssp GGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS---------------SEEEEEETTSEEEEEETTSCCCSSC
T ss_pred CCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC---------------CEEEEEeCCCcEEEEecCCcccccc
Confidence 579999999998 899999987 566899999999975 457889999999999998776542
Q ss_pred ---E-EEeCCcceeEEEccC---CCEEEE-EcCCeEEEEECCCcceEEeee--ccceeEEEEEEecCCCCEEEEecCCCe
Q psy6442 77 ---K-LEFGAVPNSLEISRD---GTTITV-THGSCVTFLDANSLELIKEHK--VPAQVHSASLLLNSERPIFVCGGEDLK 146 (231)
Q Consensus 77 ---~-~~~~~~~~~v~~~~~---~~~~~~-~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~d~~ 146 (231)
. ..+...+.+++|+|+ +..++. +.++.|++||..+...+..+. ....+..+.+ + ++.++++++.|++
T Consensus 187 ~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~--s-d~~~l~s~~~d~~ 263 (450)
T 2vdu_B 187 TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICC--G-KDYLLLSAGGDDK 263 (450)
T ss_dssp CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEE--C-STTEEEEEESSSE
T ss_pred cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEE--C-CCCEEEEEeCCCe
Confidence 2 235678999999999 876655 467899999998877666532 2345555555 6 8899999999999
Q ss_pred EEEEeCCCcceeeeccC-------------------------CCCCeeEEEEcCCCCEEEEee-CCCcEEEEeC--CCC-
Q psy6442 147 MYKFDYSTGAEIESFKG-------------------------HFGPIHCVKFSPDGELYASGS-EDGTLRLWQT--NVG- 197 (231)
Q Consensus 147 i~~~d~~~~~~~~~~~~-------------------------h~~~V~~v~~spd~~~laS~s-~d~~v~iwd~--~~~- 197 (231)
|++||+.+++.+..+.. +...|.+++|+|++++|++++ .|+.|+||++ ..+
T Consensus 264 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~ 343 (450)
T 2vdu_B 264 IFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKG 343 (450)
T ss_dssp EEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTT
T ss_pred EEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCC
Confidence 99999999987777652 235789999999999999998 8999999999 555
Q ss_pred --Ceeeeeec
Q psy6442 198 --KTYGLWKC 205 (231)
Q Consensus 198 --~~~~~~~~ 205 (231)
+..+..+.
T Consensus 344 ~l~~~~~~~~ 353 (450)
T 2vdu_B 344 DLALKQIITF 353 (450)
T ss_dssp CEEEEEEEEC
T ss_pred ceeeccEecc
Confidence 44444443
No 118
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.89 E-value=5.3e-22 Score=162.45 Aligned_cols=177 Identities=15% Similarity=0.147 Sum_probs=128.0
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEE--CCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDI--NKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL 78 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~--~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~ 78 (231)
++.||+|++|+..+++.+. +.+|.+.|.++.| +++++. |++++.|++|++||+++++.+..+
T Consensus 104 ~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~---------------l~~~~~dg~i~vwd~~~~~~~~~~ 167 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSC---------------VMTGSWDKTLKFWDTRSSNPMMVL 167 (368)
T ss_dssp EETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEE---------------EEEEETTSEEEEECSSCSSCSEEE
T ss_pred EcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCE---------------EEEccCCCcEEEEECCCCcEEEEE
Confidence 3679999999999888777 6779999999999 777655 455555555555555555444333
Q ss_pred EeC------------------------------------------CcceeEEEccCCC-----EEEEEcCCeEEEEECCC
Q psy6442 79 EFG------------------------------------------AVPNSLEISRDGT-----TITVTHGSCVTFLDANS 111 (231)
Q Consensus 79 ~~~------------------------------------------~~~~~v~~~~~~~-----~~~~~~~~~i~~~d~~~ 111 (231)
... .....+++.++.. .+..+.++.+++|+...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 168 QLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp ECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred ecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence 322 2233444444332 33445678999999876
Q ss_pred c---ceEEeeeccc-------------eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcC
Q psy6442 112 L---ELIKEHKVPA-------------QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP 175 (231)
Q Consensus 112 ~---~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~sp 175 (231)
. .....+.... .+.. +.++|++.++++++.|+.|++||+.+++.+..+.+|..+|.+++|+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 325 (368)
T 3mmy_A 248 PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNG--IAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNH 325 (368)
T ss_dssp SCHHHHSEEEECSEEC----CCCEEECCEEE--EEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECT
T ss_pred CCccccceeeeeeecccccccccccccceEE--EEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECC
Confidence 5 2233333222 2444 44588999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCC
Q psy6442 176 DGELYASGSEDGTLRLWQTN 195 (231)
Q Consensus 176 d~~~laS~s~d~~v~iwd~~ 195 (231)
++++|++++.|+..+.|++-
T Consensus 326 ~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 326 NGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp TSSCEEEEECCCSTTCGGGC
T ss_pred CCCeEEEEeccccccccccc
Confidence 99999999998866655543
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=8.8e-22 Score=177.54 Aligned_cols=184 Identities=14% Similarity=0.161 Sum_probs=144.6
Q ss_pred CCcCCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceE--
Q psy6442 1 MCVDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQ-- 76 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~-- 76 (231)
++.||+|++|+..+++ .+..+.+|.+.|.++.|+|+. ++..+++++.||+|++||+..+....
T Consensus 73 ~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~-------------~~~~l~sgs~dg~I~vwdl~~~~~~~~~ 139 (753)
T 3jro_A 73 CSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE-------------YGPLLLVASSDGKVSVVEFKENGTTSPI 139 (753)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-------------GCSEEEEEETTSEEEEEECCSSSCCCCE
T ss_pred EeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCC-------------CCCEEEEEeCCCcEEEEEeecCCCccee
Confidence 4679999999999887 788899999999999999971 14468999999999999998874322
Q ss_pred EE-EeCCcceeEEEcc-------------CCCEEEE-EcCCeEEEEECCCcce----EEeeec-cceeEEEEEEecCC--
Q psy6442 77 KL-EFGAVPNSLEISR-------------DGTTITV-THGSCVTFLDANSLEL----IKEHKV-PAQVHSASLLLNSE-- 134 (231)
Q Consensus 77 ~~-~~~~~~~~v~~~~-------------~~~~~~~-~~~~~i~~~d~~~~~~----~~~~~~-~~~~~~~~~~~~~~-- 134 (231)
.+ .+...+.+++|+| ++..+++ +.++.|++||.+.... ...... ...+..+.+ +|+
T Consensus 140 ~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~--sp~~~ 217 (753)
T 3jro_A 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW--SPTVL 217 (753)
T ss_dssp EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE--CCCCS
T ss_pred EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEe--ccCCC
Confidence 22 3456889999999 3665554 5688999999876532 223322 234555444 788
Q ss_pred -CCEEEEecCCCeEEEEeCCCcc-----eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442 135 -RPIFVCGGEDLKMYKFDYSTGA-----EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT 199 (231)
Q Consensus 135 -~~~~~~g~~d~~i~~~d~~~~~-----~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~ 199 (231)
+..+++++.|+.|++||+.++. .+....+|...|++++|+|++++|++++.||.|+||++..+..
T Consensus 218 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 218 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence 8899999999999999998764 3344567899999999999999999999999999999986543
No 120
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.3e-21 Score=168.53 Aligned_cols=170 Identities=9% Similarity=0.116 Sum_probs=134.6
Q ss_pred CCcCCCceeeeccCCCeEeeeecccc-----cEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc-
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKG-----CVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE- 74 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~-----~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~- 74 (231)
++.||+|++|+... ++..+. |.. .|.+++|+|+|+ .|++|+.||+|+|||+.++..
T Consensus 103 ~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~---------------~LAsgs~DGtVkIWd~~~~~l~ 164 (588)
T 2j04_A 103 LSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIES---------------SIVVGNEDGELQFFSIRKNSEN 164 (588)
T ss_dssp EETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSS---------------CEEEEETTSEEEEEECCCCTTT
T ss_pred EeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCC---------------EEEEEcCCCEEEEEECCCCccc
Confidence 36799999999543 888888 776 499999999854 589999999999999998763
Q ss_pred ------eEEEEe-----CCcceeEEEccCCCEEEEEcCCeEEEEECCCcceE---Eeee-c-cceeEEEEEEecCCCCEE
Q psy6442 75 ------VQKLEF-----GAVPNSLEISRDGTTITVTHGSCVTFLDANSLELI---KEHK-V-PAQVHSASLLLNSERPIF 138 (231)
Q Consensus 75 ------~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~~~~-~-~~~~~~~~~~~~~~~~~~ 138 (231)
+.++.. ...+.+++|+|++ .++.+.++.+++|+....... ++.. . ...+..+.+ + +..+
T Consensus 165 ~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF--s--g~~L 239 (588)
T 2j04_A 165 TPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI--V--DYKV 239 (588)
T ss_dssp CCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE--E--TTEE
T ss_pred cccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE--E--CCEE
Confidence 455542 2479999999999 767778999999998876632 2332 2 234555555 3 4678
Q ss_pred EEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEE--cCCCCEEEEeeCCCcEEEEeCC
Q psy6442 139 VCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKF--SPDGELYASGSEDGTLRLWQTN 195 (231)
Q Consensus 139 ~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~--spd~~~laS~s~d~~v~iwd~~ 195 (231)
++++ +++|++||...+.......+|.+.|.+++| +||+..|+++++||+ |||...
T Consensus 240 ASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 240 VLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 8887 689999999887764433489999999999 999999999999999 999973
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.88 E-value=1.9e-20 Score=157.44 Aligned_cols=192 Identities=11% Similarity=0.049 Sum_probs=155.3
Q ss_pred CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeE-eccccccc--------------------------cCCCE
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGAADFQA--------------------------KNNTR 54 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~-s~~~d~~~--------------------------~~~~~ 54 (231)
+.|++|++|+..+++.+.++..|...+.+++|+|+++.++ ++..+..+ .+++.
T Consensus 188 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~ 267 (433)
T 3bws_A 188 MQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKE 267 (433)
T ss_dssp GGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSE
T ss_pred CCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCE
Confidence 5689999999999999999999999999999999998775 43233211 15678
Q ss_pred EEEEe--------CCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE--cCCeEEEEECCCcceEEeeecccee
Q psy6442 55 LISCA--------EDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDANSLELIKEHKVPAQV 124 (231)
Q Consensus 55 l~s~s--------~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~ 124 (231)
|++++ .|++|++||+.+++....+.+...+..++++|++..++++ .++.+.+||..+.+..........+
T Consensus 268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~ 347 (433)
T 3bws_A 268 LYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKP 347 (433)
T ss_dssp EEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred EEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCC
Confidence 88888 5899999999999887777666788899999999876554 5689999999988777776655555
Q ss_pred EEEEEEecCCCCEEEEecC---------------CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEee-CCCc
Q psy6442 125 HSASLLLNSERPIFVCGGE---------------DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGS-EDGT 188 (231)
Q Consensus 125 ~~~~~~~~~~~~~~~~g~~---------------d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s-~d~~ 188 (231)
..+. +++++..+++++. |+.|++||..+++.+..+.. ...+.+++|+|++++|++++ .|++
T Consensus 348 ~~~~--~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~ 424 (433)
T 3bws_A 348 NTIA--LSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQ 424 (433)
T ss_dssp EEEE--ECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTE
T ss_pred CeEE--EcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCe
Confidence 5444 4888887777665 56999999999988888875 45789999999999988776 4999
Q ss_pred EEEEeCCC
Q psy6442 189 LRLWQTNV 196 (231)
Q Consensus 189 v~iwd~~~ 196 (231)
|++|++..
T Consensus 425 i~v~~~~~ 432 (433)
T 3bws_A 425 IRVYRRDG 432 (433)
T ss_dssp EEEEEETT
T ss_pred EEEEEecC
Confidence 99999753
No 122
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.7e-21 Score=178.69 Aligned_cols=166 Identities=14% Similarity=0.111 Sum_probs=138.1
Q ss_pred eecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCE-EEEE
Q psy6442 21 FEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTT-ITVT 99 (231)
Q Consensus 21 l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~ 99 (231)
..||.+.|.+++|+|++ ..||+|+.||+|+||+....+......+...+.+++|+| ++. +.++
T Consensus 13 ~~gh~~~V~~lafspdg---------------~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s 76 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQ---------------NLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVIN 76 (902)
T ss_dssp EEECSSCEEEEEEETTT---------------TEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEE
T ss_pred ccCCCCCcEEEEECCCC---------------CEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEE
Confidence 45899999999999985 458999999999999998776655555567899999999 774 4456
Q ss_pred cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCccee-----------eeccCCCCCe
Q psy6442 100 HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI-----------ESFKGHFGPI 168 (231)
Q Consensus 100 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~-----------~~~~~h~~~V 168 (231)
.++.+++||..+.+.+..+..+..+..+. ++|++..+++|+.|+.|++||+.++... ..+.+|.++|
T Consensus 77 ~D~~v~lWd~~~~~~~~~~~~~~~V~~v~--~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V 154 (902)
T 2oaj_A 77 AKDTVYVLSLYSQKVLTTVFVPGKITSID--TDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPI 154 (902)
T ss_dssp TTCEEEEEETTTCSEEEEEECSSCEEEEE--CCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCC
T ss_pred CcCeEEEEECCCCcEEEEEcCCCCEEEEE--ECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCe
Confidence 78999999999888887776555565544 4899999999999999999999887653 3457899999
Q ss_pred eEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442 169 HCVKFSPD-GELYASGSEDGTLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 169 ~~v~~spd-~~~laS~s~d~~v~iwd~~~~~~~~~~~~ 205 (231)
.+++|+|+ +.+|++++.|++| |||+++++....++.
T Consensus 155 ~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~ 191 (902)
T 2oaj_A 155 VSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIY 191 (902)
T ss_dssp CEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECC
T ss_pred EEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEec
Confidence 99999996 5789999999999 999999988776654
No 123
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.8e-21 Score=165.64 Aligned_cols=186 Identities=8% Similarity=-0.003 Sum_probs=132.3
Q ss_pred CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCce----eEeccc--ccc------------ccCCCEEEEEeCCC
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASK----AASGAA--DFQ------------AKNNTRLISCAEDK 62 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~----~~s~~~--d~~------------~~~~~~l~s~s~D~ 62 (231)
++.|++|+ ++.++ +++++|.+.|++++|+|+|.- +-++.. -+. ..+++.|++++.||
T Consensus 33 as~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg 107 (588)
T 2j04_A 33 TFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNG 107 (588)
T ss_dssp CSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTS
T ss_pred EcCCceee--ccccc---ceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 46777777 54444 455788888888888887621 000000 000 12678899999999
Q ss_pred CEEEEeCCCCCceEEEEeCC-----cceeEEEccCCCEEEEE-cCCeEEEEECCCcce-------EEeeecc-----cee
Q psy6442 63 TVRLWDVSASAEVQKLEFGA-----VPNSLEISRDGTTITVT-HGSCVTFLDANSLEL-------IKEHKVP-----AQV 124 (231)
Q Consensus 63 ti~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~-------~~~~~~~-----~~~ 124 (231)
+|++||... ++..+.+.. .+.+++|+||++.++++ .++.+++||...... +..+... ..+
T Consensus 108 ~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V 185 (588)
T 2j04_A 108 NVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWV 185 (588)
T ss_dssp CEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCE
T ss_pred cEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccE
Confidence 999999543 444444222 48899999999988765 589999999887642 3443221 245
Q ss_pred EEEEEEecCCCCEEEEecCCCeEEEEeCCCcce---eeec-cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442 125 HSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE---IESF-KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY 200 (231)
Q Consensus 125 ~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~---~~~~-~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~ 200 (231)
..++ ++|++ +++++.|.++++||...+.. .+++ .+|...|.+++|+ ++.||+++ +++|++||+..++..
T Consensus 186 ~sVa--wSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~ 258 (588)
T 2j04_A 186 THIV--WYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSIS 258 (588)
T ss_dssp EEEE--EETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEE
T ss_pred EEEE--EcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEE
Confidence 5444 47888 77888899999999987663 3456 4899999999999 68999998 699999999988763
No 124
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.87 E-value=4.3e-20 Score=156.08 Aligned_cols=183 Identities=22% Similarity=0.293 Sum_probs=137.0
Q ss_pred ccCCCe-EeeeecccccEEEEEECCC-CceeEeccccccc-------------------------------------cCC
Q psy6442 12 GDTGDW-IGTFEGHKGCVWGVDINKD-ASKAASGAADFQA-------------------------------------KNN 52 (231)
Q Consensus 12 ~~~g~~-i~~l~gH~~~V~~~~~~~~-~~~~~s~~~d~~~-------------------------------------~~~ 52 (231)
..++++ +..+.+|.+.|.++.|+|+ +..+++++.+..+ .++
T Consensus 114 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 193 (430)
T 2xyi_A 114 SVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNL 193 (430)
T ss_dssp ----CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTS
T ss_pred CCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCC
Confidence 344554 3556789999999999997 6788887654211 033
Q ss_pred C-EEEEEeCCCCEEEEeCCCCCc-------eEEE-EeCCcceeEEEccC-CCEEEE-EcCCeEEEEECCCc---ceEEee
Q psy6442 53 T-RLISCAEDKTVRLWDVSASAE-------VQKL-EFGAVPNSLEISRD-GTTITV-THGSCVTFLDANSL---ELIKEH 118 (231)
Q Consensus 53 ~-~l~s~s~D~ti~iwd~~~~~~-------~~~~-~~~~~~~~v~~~~~-~~~~~~-~~~~~i~~~d~~~~---~~~~~~ 118 (231)
. .|++++.||+|++||+..+.. ...+ .+...+.+++|+|+ +..+++ +.++.|++||.+.. ......
T Consensus 194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~ 273 (430)
T 2xyi_A 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273 (430)
T ss_dssp TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence 4 899999999999999987432 1222 34567899999994 555544 46899999999876 333443
Q ss_pred ec-cceeEEEEEEecCCCC-EEEEecCCCeEEEEeCCC-cceeeeccCCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeC
Q psy6442 119 KV-PAQVHSASLLLNSERP-IFVCGGEDLKMYKFDYST-GAEIESFKGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQT 194 (231)
Q Consensus 119 ~~-~~~~~~~~~~~~~~~~-~~~~g~~d~~i~~~d~~~-~~~~~~~~~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~ 194 (231)
.. ...+..+.+ +|++. ++++|+.|+.|++||++. ...+..+.+|..+|.+++|+|++. +|++++.|+.|+|||+
T Consensus 274 ~~~~~~v~~i~~--~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~ 351 (430)
T 2xyi_A 274 DAHTAEVNCLSF--NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351 (430)
T ss_dssp ECCSSCEEEEEE--CSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred ecCCCCeEEEEe--CCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence 32 334555554 77776 788999999999999987 566888899999999999999985 7999999999999999
Q ss_pred CC
Q psy6442 195 NV 196 (231)
Q Consensus 195 ~~ 196 (231)
..
T Consensus 352 ~~ 353 (430)
T 2xyi_A 352 SK 353 (430)
T ss_dssp GG
T ss_pred CC
Confidence 77
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.85 E-value=1.9e-19 Score=151.71 Aligned_cols=196 Identities=14% Similarity=0.080 Sum_probs=145.8
Q ss_pred CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCC---CEEEEeCCCCCceEEEEeC
Q psy6442 5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDK---TVRLWDVSASAEVQKLEFG 81 (231)
Q Consensus 5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~---ti~iwd~~~~~~~~~~~~~ 81 (231)
++|++|+.+ |..+..+.+|.+.|.+++|+|+|+. |++++.|+ +|++||+.++++.....+.
T Consensus 159 ~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~---------------la~~s~~~~~~~i~~~d~~tg~~~~l~~~~ 222 (415)
T 2hqs_A 159 YELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSK---------------LAYVTFESGRSALVIQTLANGAVRQVASFP 222 (415)
T ss_dssp EEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSE---------------EEEEECTTSSCEEEEEETTTCCEEEEECCS
T ss_pred ceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCE---------------EEEEEecCCCcEEEEEECCCCcEEEeecCC
Confidence 799999986 6667889999999999999998654 67777775 9999999998876555566
Q ss_pred CcceeEEEccCCCEEEEE-c-C--CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecC-CC--eEEEEeCCC
Q psy6442 82 AVPNSLEISRDGTTITVT-H-G--SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGE-DL--KMYKFDYST 154 (231)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~-~-~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-d~--~i~~~d~~~ 154 (231)
..+.+++|+||++.++.. . + ..|.+||..+.+..........+... .++|+++.+++++. ++ .|++||..+
T Consensus 223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~--~~spdg~~l~~~s~~~g~~~i~~~d~~~ 300 (415)
T 2hqs_A 223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEP--TWFPDSQNLAFTSDQAGRPQVYKVNING 300 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEE--EECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccce--EECCCCCEEEEEECCCCCcEEEEEECCC
Confidence 778999999999977643 2 3 35899998876654333333334443 44899998887765 34 788899887
Q ss_pred cceeeeccCCCCCeeEEEEcCCCCEEEEeeCC---CcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442 155 GAEIESFKGHFGPIHCVKFSPDGELYASGSED---GTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL 222 (231)
Q Consensus 155 ~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (231)
++ ...+..|...+.+++|+|||++|++++.+ ..|.+||+.+++...+.. . .....++|.++|.+
T Consensus 301 ~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~-~--~~~~~~~~spdg~~ 367 (415)
T 2hqs_A 301 GA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS-T--FLDETPSLAPNGTM 367 (415)
T ss_dssp SC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC-S--SSCEEEEECTTSSE
T ss_pred CC-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecC-C--CCcCCeEEcCCCCE
Confidence 66 34455677789999999999999988764 589999999988754322 1 24445566666654
No 126
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.83 E-value=7.7e-18 Score=136.60 Aligned_cols=202 Identities=11% Similarity=0.143 Sum_probs=150.1
Q ss_pred CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc-eEEEEe
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE-VQKLEF 80 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~-~~~~~~ 80 (231)
+.+++|++|+..+|+.+..+..+...+ .+.|+|+++.+ ++++..+++|.+||..+++. ...+..
T Consensus 17 ~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l--------------~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 17 QHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNV--------------VVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp GGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEE--------------EEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred cCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEE--------------EEEeCCCCeEEEEECCCCceeEEeccc
Confidence 457899999999999999888777777 99999986542 34444588999999999887 666766
Q ss_pred CCccee-EEEccCCCEEEEEcCC----eEEEEECCCcceEEeeeccceeEEEEEEecCCCCE-EEEecCCCe-EEEEeCC
Q psy6442 81 GAVPNS-LEISRDGTTITVTHGS----CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPI-FVCGGEDLK-MYKFDYS 153 (231)
Q Consensus 81 ~~~~~~-v~~~~~~~~~~~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~d~~-i~~~d~~ 153 (231)
...+.. ++++|+++.+++.... .+.+||..+.+.+...........+. ++|+++. +++...+.. +++|++.
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~spdg~~l~~~~~~~~~~i~~~~~~ 159 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIA--ISPNGNGLILIDRSSANTVRRFKID 159 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEE--ECTTSSCEEEEEETTTTEEEEEEEC
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceE--ECCCCCEEEEEecCCCceEEEEEEC
Confidence 666777 9999999988876554 89999999888877766554444444 4888874 445455577 9999986
Q ss_pred Cccee----eeccCCCCCeeEEEEcCCCCE-EEEeeCCCcEEEEeCCCCCe---eeeeeccCCcccCCCCCCccccc
Q psy6442 154 TGAEI----ESFKGHFGPIHCVKFSPDGEL-YASGSEDGTLRLWQTNVGKT---YGLWKCIEGGLNNSLGLDSSGHL 222 (231)
Q Consensus 154 ~~~~~----~~~~~h~~~V~~v~~spd~~~-laS~s~d~~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 222 (231)
....+ .....+...+..++|+|+|++ ++++..++.|++||+.+++. ...+.. +..+..++++++|+.
T Consensus 160 ~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~ 234 (331)
T 3u4y_A 160 ADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT--NNLPGTIVVSRDGST 234 (331)
T ss_dssp TTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC--SSCCCCEEECTTSSE
T ss_pred CCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC--CCCCceEEECCCCCE
Confidence 43222 111123456899999999985 56666799999999999987 666653 455667778887774
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.83 E-value=3.1e-18 Score=149.15 Aligned_cols=186 Identities=14% Similarity=0.191 Sum_probs=146.9
Q ss_pred CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeC--CCCCceEEEE
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDV--SASAEVQKLE 79 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~--~~~~~~~~~~ 79 (231)
+.|++|++||..+++++.++..+.. ++.+.|+|++ ++|++++.|++|++||+ .+++++..+.
T Consensus 156 ~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg---------------~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 156 RDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASG---------------RYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp GGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTS---------------CEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred cCCCeEEEEECCCceEEEEEecCcc-cceEEECCCC---------------CEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 4689999999999999999984333 8999999985 45788899999999999 7888888888
Q ss_pred eCCcceeEEEcc----CCCEEEEEc--CCeEEEEECCCcceEEeeeccc----------eeEEEEEEecCCC-CEEEEec
Q psy6442 80 FGAVPNSLEISR----DGTTITVTH--GSCVTFLDANSLELIKEHKVPA----------QVHSASLLLNSER-PIFVCGG 142 (231)
Q Consensus 80 ~~~~~~~v~~~~----~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~~~~~g~ 142 (231)
....+..++++| +++.++++. ++.+.+||..+.++++.+.... ......+..++++ .++++..
T Consensus 220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 888899999999 999888764 6899999999888877765421 1122233446654 4566778
Q ss_pred CCCeEEEEeCCCcceee--eccCCCCCeeEEEEcCCCCEEE-EeeCCCcEEEEeCCCCCeeeeee
Q psy6442 143 EDLKMYKFDYSTGAEIE--SFKGHFGPIHCVKFSPDGELYA-SGSEDGTLRLWQTNVGKTYGLWK 204 (231)
Q Consensus 143 ~d~~i~~~d~~~~~~~~--~~~~h~~~V~~v~~spd~~~la-S~s~d~~v~iwd~~~~~~~~~~~ 204 (231)
.+++|++||..+.+.+. .+ .+...+.+++|+|++++|+ ++..+++|++||+.+++......
T Consensus 300 ~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~ 363 (543)
T 1nir_A 300 ETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 363 (543)
T ss_dssp TTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred CCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec
Confidence 88999999998765443 33 3566788999999999765 45578999999999999887766
No 128
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.81 E-value=1.1e-17 Score=135.47 Aligned_cols=198 Identities=11% Similarity=0.068 Sum_probs=146.7
Q ss_pred CcCCCceeeeccCCCeEeeeeccc-c-cEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEGHK-G-CVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE 79 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~gH~-~-~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~ 79 (231)
+.+++|++|+..+++.+..+.... . .+..+.|+|+++.+ +++++.+++|.+||+.+++.+..+.
T Consensus 8 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l--------------~v~~~~~~~v~~~d~~~~~~~~~~~ 73 (337)
T 1pby_B 8 ARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIA--------------YATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp ETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEE--------------EEEETTTTEEEEEETTTCCEEEEEE
T ss_pred CCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEE--------------EEEeCCCCeEEEEECCCCCeEeeEE
Confidence 468999999999999998876332 2 47889999986543 4666778999999999998887777
Q ss_pred eCC------cceeEEEccCCCEEEEE-------------cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEE
Q psy6442 80 FGA------VPNSLEISRDGTTITVT-------------HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVC 140 (231)
Q Consensus 80 ~~~------~~~~v~~~~~~~~~~~~-------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (231)
... .+..++++|+++.++++ .++.+.+||..+.+..........+..+. ++|++..++.
T Consensus 74 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~s~dg~~l~~ 151 (337)
T 1pby_B 74 LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLA--WARDGSKLYG 151 (337)
T ss_dssp CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEE--ECTTSSCEEE
T ss_pred cCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeE--ECCCCCEEEE
Confidence 654 78899999999988776 35899999998877776665544444334 4788886666
Q ss_pred ecCCCeEEEEeCCCcceeeeccCC--------------------------------------------------------
Q psy6442 141 GGEDLKMYKFDYSTGAEIESFKGH-------------------------------------------------------- 164 (231)
Q Consensus 141 g~~d~~i~~~d~~~~~~~~~~~~h-------------------------------------------------------- 164 (231)
+ ++.|++||..+++.+..+..+
T Consensus 152 ~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 229 (337)
T 1pby_B 152 L--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229 (337)
T ss_dssp E--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred e--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence 6 577888988776655433211
Q ss_pred ----------CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccc
Q psy6442 165 ----------FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGH 221 (231)
Q Consensus 165 ----------~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (231)
...+.+++|+||+++++++ ++.|++||+.+++....+.. +.....++++++|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~ 292 (337)
T 1pby_B 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGS 292 (337)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSC
T ss_pred CceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC--CCceeeEEECCCCC
Confidence 1234569999999988888 79999999999988776653 33445556666665
No 129
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.80 E-value=1.4e-17 Score=133.85 Aligned_cols=142 Identities=23% Similarity=0.391 Sum_probs=116.3
Q ss_pred EEEEEeCCCCEEEEeCCCCCceEEEEe---CCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccceeEEEEE
Q psy6442 54 RLISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQVHSASL 129 (231)
Q Consensus 54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 129 (231)
.|++ +.|++|+|||+.+++++..+.. ...+.+++|+|+++.++. +.++.+++|+..+.+.++....+... ...+
T Consensus 38 ~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~-~~~~ 115 (318)
T 4ggc_A 38 VLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR-VGSL 115 (318)
T ss_dssp EEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-EEEE
T ss_pred EEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccce-EEEe
Confidence 3554 4699999999999999888764 346899999999998765 56889999999998888776654322 1222
Q ss_pred EecCCCCEEEEecCCCeEEEEeCCCc-ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442 130 LLNSERPIFVCGGEDLKMYKFDYSTG-AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT 199 (231)
Q Consensus 130 ~~~~~~~~~~~g~~d~~i~~~d~~~~-~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~ 199 (231)
...+..+++++.++.++.|+.... ..+..+.+|...+..+++++++++|++++.|++|+|||+++++.
T Consensus 116 --~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 184 (318)
T 4ggc_A 116 --SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184 (318)
T ss_dssp --EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred --ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence 345678999999999999998765 45677889999999999999999999999999999999988763
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.80 E-value=1.7e-17 Score=139.73 Aligned_cols=176 Identities=14% Similarity=0.098 Sum_probs=131.0
Q ss_pred CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCC--EEEEeCCCCCceEEEEeCC
Q psy6442 5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKT--VRLWDVSASAEVQKLEFGA 82 (231)
Q Consensus 5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~t--i~iwd~~~~~~~~~~~~~~ 82 (231)
.+|++|+..+|+.. .+.+|.+.+.++.|+|+|+.+ +++++.|+. |++||+.+++......+..
T Consensus 203 ~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~l--------------a~~~~~~g~~~i~~~d~~~~~~~~l~~~~~ 267 (415)
T 2hqs_A 203 SALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL--------------AFALSKTGSLNLYVMDLASGQIRQVTDGRS 267 (415)
T ss_dssp CEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEE--------------EEEECTTSSCEEEEEETTTCCEEECCCCSS
T ss_pred cEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEE--------------EEEEecCCCceEEEEECCCCCEEeCcCCCC
Confidence 48999999999876 478899999999999987653 236666655 9999998887644334456
Q ss_pred cceeEEEccCCCEEEEEc--CC--eEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCC---CeEEEEeCCCc
Q psy6442 83 VPNSLEISRDGTTITVTH--GS--CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGED---LKMYKFDYSTG 155 (231)
Q Consensus 83 ~~~~v~~~~~~~~~~~~~--~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d---~~i~~~d~~~~ 155 (231)
.+..++|+|+++.++... ++ .+.+||..+.+..........+. .+.++|+++.+++++.+ ..|++||+.++
T Consensus 268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~--~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ--DADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEE--EEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCccc--CeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 788999999999776543 23 67788987765433222222333 34458999988887654 68999999887
Q ss_pred ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCC---cEEEEeCCCCCe
Q psy6442 156 AEIESFKGHFGPIHCVKFSPDGELYASGSEDG---TLRLWQTNVGKT 199 (231)
Q Consensus 156 ~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~---~v~iwd~~~~~~ 199 (231)
+. ..+..|. .+.+++|+|||++|++++.++ .|.+||+..++.
T Consensus 346 ~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~ 390 (415)
T 2hqs_A 346 GV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 390 (415)
T ss_dssp CE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred CE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcE
Confidence 75 4455564 899999999999999998877 799999975543
No 131
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.79 E-value=5.2e-17 Score=128.53 Aligned_cols=217 Identities=11% Similarity=0.018 Sum_probs=149.1
Q ss_pred CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccc------cc----------------------ccCCC
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD------FQ----------------------AKNNT 53 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d------~~----------------------~~~~~ 53 (231)
+.|+++++|+..+++.. .+..|.+.|.++.|+|+++.++.+... .. ..+++
T Consensus 19 ~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 97 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGA 97 (297)
T ss_dssp CCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSS
T ss_pred CcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCC
Confidence 57899999999888766 467799999999999999988875321 00 01667
Q ss_pred EEEEEe--CCCCEEEEeC--CCCCceEEEEeCCcceeEEEccCCCEEEE--EcCCeEEEEEC--CCcceEEeeeccceeE
Q psy6442 54 RLISCA--EDKTVRLWDV--SASAEVQKLEFGAVPNSLEISRDGTTITV--THGSCVTFLDA--NSLELIKEHKVPAQVH 125 (231)
Q Consensus 54 ~l~s~s--~D~ti~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~i~~~d~--~~~~~~~~~~~~~~~~ 125 (231)
.|++++ .++..+||.+ ..+. ...+.....+..++|+|+++.+++ ..++.+.+|+. ..............+.
T Consensus 98 ~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 176 (297)
T 2ojh_A 98 LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRND 176 (297)
T ss_dssp EEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEE
T ss_pred EEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccc
Confidence 888888 4456666654 4443 334444455788899999997763 34677777774 3333332222233344
Q ss_pred EEEEEecCCCCEEEEec-CCCeEEEEeCC-CcceeeeccCCCCCeeEEEEcCCCCEEEEeeCC-----------CcEEEE
Q psy6442 126 SASLLLNSERPIFVCGG-EDLKMYKFDYS-TGAEIESFKGHFGPIHCVKFSPDGELYASGSED-----------GTLRLW 192 (231)
Q Consensus 126 ~~~~~~~~~~~~~~~g~-~d~~i~~~d~~-~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d-----------~~v~iw 192 (231)
.. .++|++..++.++ .++.+.+|++. .+..+..+..|...+.+++|+|++++|+.++.+ +.|.+|
T Consensus 177 ~~--~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~ 254 (297)
T 2ojh_A 177 GP--DYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLM 254 (297)
T ss_dssp EE--EECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEE
T ss_pred cc--eECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEE
Confidence 43 4488888777654 57777777765 455567777888899999999999999888766 569999
Q ss_pred eCCCCCeeeeeecc-CCcccCCCCCCccccc
Q psy6442 193 QTNVGKTYGLWKCI-EGGLNNSLGLDSSGHL 222 (231)
Q Consensus 193 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 222 (231)
|+.+++...+.... .......++|.++|..
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 285 (297)
T 2ojh_A 255 DMDGGNVETLFDLFGGQGTMNSPNWSPDGDE 285 (297)
T ss_dssp ETTSCSCEEEEEEEESTTTSCSCCBCTTSSE
T ss_pred ecCCCCceeeeccCCCCcccccceECCCCCE
Confidence 99998865544321 1334556777777653
No 132
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.78 E-value=9.4e-18 Score=149.88 Aligned_cols=213 Identities=11% Similarity=-0.019 Sum_probs=147.9
Q ss_pred CcCCCceeeeccCCCeEeeeecccc---cEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEGHKG---CVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL 78 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~gH~~---~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~ 78 (231)
+.||++++|+..+|+....+.+|.. .|.+++|+|||+.++++..+.... ..+.++++.+||+.+++. ..+
T Consensus 34 ~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~------~~~~~~~i~~~d~~~~~~-~~l 106 (723)
T 1xfd_A 34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIY------QHSYTGYYVLSKIPHGDP-QSL 106 (723)
T ss_dssp CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCS------SSCCCSEEEEEESSSCCC-EEC
T ss_pred eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccce------eecceeeEEEEECCCCce-Eec
Confidence 4689999999999999888888876 499999999987765543322111 112357899999998876 233
Q ss_pred EeC----CcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecc-cee----------------EEEEEEecCCCCE
Q psy6442 79 EFG----AVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVP-AQV----------------HSASLLLNSERPI 137 (231)
Q Consensus 79 ~~~----~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~----------------~~~~~~~~~~~~~ 137 (231)
... ..+..++|+||++.++...++.+.+|+..+.+..+....+ ..+ ....+.++|+++.
T Consensus 107 ~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~ 186 (723)
T 1xfd_A 107 DPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR 186 (723)
T ss_dssp CCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE
T ss_pred cCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCE
Confidence 221 2377899999999887766789999998876655443321 111 0023445999998
Q ss_pred EEEecCCC----------------------------------eEEEEeCCCcceeeeccCC------CCCeeEEEEcCCC
Q psy6442 138 FVCGGEDL----------------------------------KMYKFDYSTGAEIESFKGH------FGPIHCVKFSPDG 177 (231)
Q Consensus 138 ~~~g~~d~----------------------------------~i~~~d~~~~~~~~~~~~h------~~~V~~v~~spd~ 177 (231)
+++++.+. .|++||+.+++....+..+ ...+.+++|||||
T Consensus 187 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg 266 (723)
T 1xfd_A 187 LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST 266 (723)
T ss_dssp EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS
T ss_pred EEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCC
Confidence 88876432 7999999887755555543 6678999999999
Q ss_pred CEEEEeeC----CCcEEEEeCCCCCeeeeeeccCCccc----CCCCCCcccc
Q psy6442 178 ELYASGSE----DGTLRLWQTNVGKTYGLWKCIEGGLN----NSLGLDSSGH 221 (231)
Q Consensus 178 ~~laS~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 221 (231)
++|++.+. +..|++||+.+++...+.+...+.+. ..+.|.++|+
T Consensus 267 ~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~ 318 (723)
T 1xfd_A 267 KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGR 318 (723)
T ss_dssp EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSC
T ss_pred eEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCC
Confidence 98877643 36799999999987666544322321 2456666665
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.77 E-value=1.7e-16 Score=129.38 Aligned_cols=202 Identities=14% Similarity=0.181 Sum_probs=150.3
Q ss_pred cCCCceeeeccCCCeEeeeeccccc---------EEEEEECCCCceeEeccccccccCCCEEEEE-eCCCCEEEEeCCCC
Q psy6442 3 VDGKPMLRQGDTGDWIGTFEGHKGC---------VWGVDINKDASKAASGAADFQAKNNTRLISC-AEDKTVRLWDVSAS 72 (231)
Q Consensus 3 ~d~~~~~~~~~~g~~i~~l~gH~~~---------V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~-s~D~ti~iwd~~~~ 72 (231)
.+++|.+|+..+|+.+..+..+.+. +..+.|+|+++.+ +++. +.+++|.+||..++
T Consensus 109 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l--------------~~~~~~~~~~i~~~d~~~~ 174 (353)
T 3vgz_A 109 VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTV--------------YISGIGKESVIWVVDGGNI 174 (353)
T ss_dssp TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEE--------------EEEEESSSCEEEEEETTTT
T ss_pred CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEE--------------EEEecCCCceEEEEcCCCC
Confidence 4688999999999998888766533 6889999986543 2233 35789999999999
Q ss_pred CceEEEE-eCCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeecc---ceeEEEEEEecCCCCEEEEec-CCCe
Q psy6442 73 AEVQKLE-FGAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVP---AQVHSASLLLNSERPIFVCGG-EDLK 146 (231)
Q Consensus 73 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~-~d~~ 146 (231)
+.+..+. ....+..++++|++..++++. ++.+.+||..+.+........ .......+.+++++..++.++ .++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 254 (353)
T 3vgz_A 175 KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE 254 (353)
T ss_dssp EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE
T ss_pred ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE
Confidence 8887777 455688999999999887764 678999999988877666541 111122334478887655554 4589
Q ss_pred EEEEeCCCcceeeeccCCCCCeeEEEEcCCCCE-EEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442 147 MYKFDYSTGAEIESFKGHFGPIHCVKFSPDGEL-YASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL 222 (231)
Q Consensus 147 i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~-laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (231)
|++||..+++.+..+.... ...++|+|++++ +++...++.|.+||..+++....+.. +.....++++++|+.
T Consensus 255 v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~ 327 (353)
T 3vgz_A 255 VLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT--PTHPNSLALSADGKT 327 (353)
T ss_dssp EEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC--CSEEEEEEECTTSCE
T ss_pred EEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec--CCCCCeEEEcCCCCE
Confidence 9999999988877776433 367999999985 55555799999999999998877764 345566777777763
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.77 E-value=9.8e-17 Score=130.84 Aligned_cols=198 Identities=12% Similarity=0.074 Sum_probs=150.2
Q ss_pred CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC-
Q psy6442 4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA- 82 (231)
Q Consensus 4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~- 82 (231)
+++|++|+..+++.+..+... ..+..+.|+|+++.+ +++...+++|.+||..+++.+..+....
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l--------------~v~~~~~~~v~~~d~~~~~~~~~~~~~~~ 132 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTL--------------WFGNTVNSAVTAIDAKTGEVKGRLVLDDR 132 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEE--------------EEEETTTTEEEEEETTTCCEEEEEESCCC
T ss_pred CccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEE--------------EEEecCCCEEEEEeCCCCeeEEEEecCCC
Confidence 678999999999998887743 446788888876542 4566668999999999999888777632
Q ss_pred ---------cceeEEEccCCCEEEEEc---CCeEEEEECCCcceEEeee-ccceeEEEEEEecCCCCEEEEecCCCeEEE
Q psy6442 83 ---------VPNSLEISRDGTTITVTH---GSCVTFLDANSLELIKEHK-VPAQVHSASLLLNSERPIFVCGGEDLKMYK 149 (231)
Q Consensus 83 ---------~~~~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~ 149 (231)
.+..++++|++..++++. ++.+.+||..+.+...... .......+. +++++..++.++.++.|++
T Consensus 133 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~s~dg~~l~~~~~~~~i~~ 210 (353)
T 3vgz_A 133 KRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLA--LDSEGKRLYTTNADGELIT 210 (353)
T ss_dssp CCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCE--EETTTTEEEEECTTSEEEE
T ss_pred ccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEE--ECCCCCEEEEEcCCCeEEE
Confidence 267899999999877654 5689999999888777665 222233333 4788888888888999999
Q ss_pred EeCCCcceeeeccC----CCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccc
Q psy6442 150 FDYSTGAEIESFKG----HFGPIHCVKFSPDGELYASGS-EDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGH 221 (231)
Q Consensus 150 ~d~~~~~~~~~~~~----h~~~V~~v~~spd~~~laS~s-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (231)
||..+++.+..+.. +...+.+++|+|++++++.++ .++.|.+||..+++.......-. ...++++++|+
T Consensus 211 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~ 284 (353)
T 3vgz_A 211 IDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARN 284 (353)
T ss_dssp EETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTT
T ss_pred EECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCC
Confidence 99999887766543 556788999999998665554 56999999999999877766422 23455666654
No 135
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.77 E-value=4.6e-17 Score=136.96 Aligned_cols=172 Identities=14% Similarity=0.151 Sum_probs=126.0
Q ss_pred CcCCCceeeeccCC-CeEeeeecccccEEEEEECCCCceeEecccccccc------------------------------
Q psy6442 2 CVDGKPMLRQGDTG-DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK------------------------------ 50 (231)
Q Consensus 2 ~~d~~~~~~~~~~g-~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~------------------------------ 50 (231)
+.|+++++|+.... ..+.++.+|.+.+..+.++|+++.+++++.|..+.
T Consensus 206 s~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ 285 (420)
T 4gga_A 206 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285 (420)
T ss_dssp ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEEC
T ss_pred eCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeC
Confidence 56788888887654 45788999999999999999999999987653211
Q ss_pred --CCCEEEE--EeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE---cCCeEEEEECCCcceEEeeecc-c
Q psy6442 51 --NNTRLIS--CAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT---HGSCVTFLDANSLELIKEHKVP-A 122 (231)
Q Consensus 51 --~~~~l~s--~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~i~~~d~~~~~~~~~~~~~-~ 122 (231)
....+++ ++.|++|++||+.++++...+.....+.++.++|++..++++ .++.|++||..+.+.+..+..+ .
T Consensus 286 p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~ 365 (420)
T 4gga_A 286 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS 365 (420)
T ss_dssp TTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS
T ss_pred CCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC
Confidence 3345554 458999999999999999988888899999999999987664 3689999999999888877654 3
Q ss_pred eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcC
Q psy6442 123 QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP 175 (231)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~sp 175 (231)
.+..+.+ +|++..+++|+.|++|++||+....+....+.+...+....|..
T Consensus 366 ~V~~l~~--spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~~~ 416 (420)
T 4gga_A 366 RVLSLTM--SPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLIH 416 (420)
T ss_dssp CEEEEEE--CTTSSCEEEEETTTEEEEECCSCSSCC-----------------
T ss_pred CEEEEEE--cCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccccCC
Confidence 5655554 89999999999999999999977666666666665554444433
No 136
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.76 E-value=2.3e-16 Score=127.52 Aligned_cols=184 Identities=17% Similarity=0.193 Sum_probs=140.2
Q ss_pred cCCCceeeeccCCCeEeeeec-c----cccEEEEEECCCCceeEeccccccccCCCEEEEEe------------CCCCEE
Q psy6442 3 VDGKPMLRQGDTGDWIGTFEG-H----KGCVWGVDINKDASKAASGAADFQAKNNTRLISCA------------EDKTVR 65 (231)
Q Consensus 3 ~d~~~~~~~~~~g~~i~~l~g-H----~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s------------~D~ti~ 65 (231)
.+++|++|+..+++.+..+.. + ...+..+.|+|+++. |++++ .++.|.
T Consensus 54 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~---------------l~~~~~~~~~~~~~~~~~~~~i~ 118 (337)
T 1pby_B 54 KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKT---------------LAIYESPVRLELTHFEVQPTRVA 118 (337)
T ss_dssp TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSE---------------EEEEEEEEEECSSCEEECCCEEE
T ss_pred CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCE---------------EEEEecccccccccccccCceEE
Confidence 467899999999998887663 2 235677889988655 44443 579999
Q ss_pred EEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccc-----------------------
Q psy6442 66 LWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPA----------------------- 122 (231)
Q Consensus 66 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----------------------- 122 (231)
+||+.+++.+..+.....+..++++|+++.++++ ++.+.+||..+.+....+....
T Consensus 119 v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 197 (337)
T 1pby_B 119 LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGV 197 (337)
T ss_dssp EEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTE
T ss_pred EEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCc
Confidence 9999988888777777778899999999987776 6789999987765543322110
Q ss_pred ------------------------------------------eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeee
Q psy6442 123 ------------------------------------------QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160 (231)
Q Consensus 123 ------------------------------------------~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~ 160 (231)
......+.+++++..++++ ++.|++||+.+++.+..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~ 275 (337)
T 1pby_B 198 MATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKR 275 (337)
T ss_dssp EEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEE
T ss_pred eeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcce
Confidence 0001124457888887777 68999999998888777
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442 161 FKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 161 ~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~ 205 (231)
+..+ ..+.+++|+|++++|++++.++.|++||+.+++....++.
T Consensus 276 ~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 276 VPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred ecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 6533 4678999999999888889999999999999998887764
No 137
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.75 E-value=3.3e-16 Score=127.36 Aligned_cols=197 Identities=13% Similarity=0.049 Sum_probs=140.4
Q ss_pred CcCCCceeeeccCCCeEeeeeccc-ccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEGHK-GCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF 80 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~gH~-~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~ 80 (231)
+.+++|++|+..+++.+.++..+. ..+..+.|+|+++.+ +++...+++|.+||+.+++.+..+..
T Consensus 18 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~--------------~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 18 NYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTA--------------YVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp ETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEE--------------EEEETTTTEEEEEETTTTEEEEEEES
T ss_pred CCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEE--------------EEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 468999999999999998887554 246788999986542 45666789999999999888777765
Q ss_pred CC-------cceeEEEccCCCEEEEEc-------------CCeEEEEECCCcce---EEeeeccceeEEEEEEecCCCCE
Q psy6442 81 GA-------VPNSLEISRDGTTITVTH-------------GSCVTFLDANSLEL---IKEHKVPAQVHSASLLLNSERPI 137 (231)
Q Consensus 81 ~~-------~~~~v~~~~~~~~~~~~~-------------~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 137 (231)
.. .+..++++|+++.++++. .+.+.+||..+.+. +.....+..+..+. +++++.
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~s~dg~- 160 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMR--AADDGS- 160 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEE--ECTTSC-
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCccccee--ECCCCc-
Confidence 33 278999999999887764 47899999877433 23333333333333 478888
Q ss_pred EEEecCCCeEEEEeCCCcceeeeccCCC----------------------------------------------------
Q psy6442 138 FVCGGEDLKMYKFDYSTGAEIESFKGHF---------------------------------------------------- 165 (231)
Q Consensus 138 ~~~g~~d~~i~~~d~~~~~~~~~~~~h~---------------------------------------------------- 165 (231)
++.++.+ |++||..+++.+..+..+.
T Consensus 161 l~~~~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 238 (349)
T 1jmx_B 161 LYVAGPD--IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 238 (349)
T ss_dssp EEEESSS--EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred EEEccCc--EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence 4444433 9999998887665554221
Q ss_pred ----------------CCeeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccc
Q psy6442 166 ----------------GPIHCVKFSP-DGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGH 221 (231)
Q Consensus 166 ----------------~~V~~v~~sp-d~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (231)
..+.+++|+| ++++++++ ++.|.+||+.+++....+.. +.....++++++|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~ 307 (349)
T 1jmx_B 239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGD 307 (349)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSS
T ss_pred eccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC--CCCccceEECCCCC
Confidence 1345778889 99988888 88999999999988776653 23344556666554
No 138
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.74 E-value=7.1e-18 Score=150.84 Aligned_cols=195 Identities=10% Similarity=0.000 Sum_probs=134.6
Q ss_pred cCCCceeeeccCCCeEeeeecccc---cEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE
Q psy6442 3 VDGKPMLRQGDTGDWIGTFEGHKG---CVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE 79 (231)
Q Consensus 3 ~d~~~~~~~~~~g~~i~~l~gH~~---~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~ 79 (231)
.|++|++|+..+|+....+.+|.. .|.++.|+|||+.++.++.... ...-+.|++|++||+.+++.+....
T Consensus 34 ~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~------~~~~s~~~~i~~~d~~~g~~~~~~~ 107 (719)
T 1z68_A 34 ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSK------LWRYSYTATYYIYDLSNGEFVRGNE 107 (719)
T ss_dssp TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEE------CSSSCEEEEEEEEETTTTEECCSSC
T ss_pred CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCce------eEEeecceEEEEEECCCCcccccee
Confidence 589999999999998887777755 3899999999776543221000 0000127899999999887621122
Q ss_pred eCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccc-e-eE---------------EEEEEecCCCCEEEEec
Q psy6442 80 FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPA-Q-VH---------------SASLLLNSERPIFVCGG 142 (231)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~-~~---------------~~~~~~~~~~~~~~~g~ 142 (231)
+...+..++|+|||+.++...++.|.+|+..+.+..+...... . +. ...+.++|+++.+++++
T Consensus 108 l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~ 187 (719)
T 1z68_A 108 LPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE 187 (719)
T ss_dssp CCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred cCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence 3456788999999998887778899999987766543321111 0 00 01344599999998876
Q ss_pred CCC----------------------------------eEEEEeCCCccee--------eeccCCCCCeeEEEEcCCCCEE
Q psy6442 143 EDL----------------------------------KMYKFDYSTGAEI--------ESFKGHFGPIHCVKFSPDGELY 180 (231)
Q Consensus 143 ~d~----------------------------------~i~~~d~~~~~~~--------~~~~~h~~~V~~v~~spd~~~l 180 (231)
.|. .|++||+.+++.. ..+.+|...+.+++||||++++
T Consensus 188 ~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~ 267 (719)
T 1z68_A 188 FNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVC 267 (719)
T ss_dssp EECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEE
T ss_pred ECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEE
Confidence 541 7889999887642 2345788899999999998877
Q ss_pred EEeeCC----CcEEEEe----CCCCCeeeee
Q psy6442 181 ASGSED----GTLRLWQ----TNVGKTYGLW 203 (231)
Q Consensus 181 aS~s~d----~~v~iwd----~~~~~~~~~~ 203 (231)
++.... ..|.+|| +.+++...+.
T Consensus 268 ~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~ 298 (719)
T 1z68_A 268 LQWLKRVQNVSVLSICDFREDWQTWDCPKTQ 298 (719)
T ss_dssp EEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred EEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence 775432 2488899 8777765555
No 139
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.74 E-value=2.2e-17 Score=140.03 Aligned_cols=148 Identities=14% Similarity=0.164 Sum_probs=109.4
Q ss_pred CCEEEEEeCCCCEEEEeCCCC----------------CceEEEEeCCcceeEEEccCCCEEEE---E--cCCeEEEEECC
Q psy6442 52 NTRLISCAEDKTVRLWDVSAS----------------AEVQKLEFGAVPNSLEISRDGTTITV---T--HGSCVTFLDAN 110 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~---~--~~~~i~~~d~~ 110 (231)
+..+++++.|+ +++|+.... .....+.+...+.+++|+|+++.+++ + .++.+++||..
T Consensus 48 ~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~ 126 (434)
T 2oit_A 48 YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVR 126 (434)
T ss_dssp TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHH
T ss_pred CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEcc
Confidence 45678888887 888874210 01123334567999999999998884 2 35799999976
Q ss_pred Cc--------ceE---Eeee-ccceeEEEEEEecCC-CCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCC
Q psy6442 111 SL--------ELI---KEHK-VPAQVHSASLLLNSE-RPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDG 177 (231)
Q Consensus 111 ~~--------~~~---~~~~-~~~~~~~~~~~~~~~-~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~ 177 (231)
+. +.+ .... ....+..+.+ +|+ +.++++++.|++|++||++++..+....+|...|.+++|+|+|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg 204 (434)
T 2oit_A 127 TFSNEAKQQKRPFAYHKLLKDAGGMVIDMKW--NPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKG 204 (434)
T ss_dssp HHHCTTCSSCCCSEEEECCCSGGGSEEEEEE--CSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTS
T ss_pred ccccCCcCCcceeeeeeccCCCCCceEEEEE--CCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCC
Confidence 54 111 2211 1234555554 776 7889999999999999999887776677899999999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442 178 ELYASGSEDGTLRLWQTNVGKTYGLW 203 (231)
Q Consensus 178 ~~laS~s~d~~v~iwd~~~~~~~~~~ 203 (231)
.+|++++.|++|++||.+ ++.....
T Consensus 205 ~~lasgs~dg~v~iwd~~-~~~~~~~ 229 (434)
T 2oit_A 205 KQLAVGKQNGTVVQYLPT-LQEKKVI 229 (434)
T ss_dssp SCEEEEETTSCEEEECTT-CCEEEEE
T ss_pred CEEEEEcCCCcEEEEccC-Ccccccc
Confidence 999999999999999998 5554444
No 140
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.74 E-value=7e-16 Score=134.29 Aligned_cols=202 Identities=13% Similarity=0.072 Sum_probs=148.7
Q ss_pred CcCCCceeeec--cCCCeEeeeecccccEEEEEECC----CCceeEeccccccccCCCEEEEEe-CCCCEEEEeCCCCCc
Q psy6442 2 CVDGKPMLRQG--DTGDWIGTFEGHKGCVWGVDINK----DASKAASGAADFQAKNNTRLISCA-EDKTVRLWDVSASAE 74 (231)
Q Consensus 2 ~~d~~~~~~~~--~~g~~i~~l~gH~~~V~~~~~~~----~~~~~~s~~~d~~~~~~~~l~s~s-~D~ti~iwd~~~~~~ 74 (231)
+.|++|++|+. .+++.+.++.. ...+..+.|+| +|++ |++++ .|++|.+||..++++
T Consensus 197 ~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~---------------l~v~~~~~~~v~v~D~~t~~~ 260 (543)
T 1nir_A 197 GRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRY---------------TIAGAYWPPQFAIMDGETLEP 260 (543)
T ss_dssp ETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTE---------------EEEEEEESSEEEEEETTTCCE
T ss_pred CCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCE---------------EEEEEccCCeEEEEecccccc
Confidence 45799999999 89999999884 45579999999 8654 55565 589999999999998
Q ss_pred eEEEEeC------------CcceeEEEccCCCEEEEE--cCCeEEEEECCCcceEE--eeeccceeEEEEEEecCCCCEE
Q psy6442 75 VQKLEFG------------AVPNSLEISRDGTTITVT--HGSCVTFLDANSLELIK--EHKVPAQVHSASLLLNSERPIF 138 (231)
Q Consensus 75 ~~~~~~~------------~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 138 (231)
+..+... ..+..+.++|++..++++ .++.|.+||..+.+.+. .+......... .++|+++++
T Consensus 261 ~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~--~~spdg~~l 338 (543)
T 1nir_A 261 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDG--GWDSSHRYF 338 (543)
T ss_dssp EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCE--EECTTSCEE
T ss_pred ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCc--eECCCCCEE
Confidence 8887642 256789999998877665 45799999987755443 23222223333 348898865
Q ss_pred E-EecCCCeEEEEeCCCcceeeeccC----CCCCeeEEEEcCC-CCEEEEee-CCCcEEEEeCCC-------CCeeeeee
Q psy6442 139 V-CGGEDLKMYKFDYSTGAEIESFKG----HFGPIHCVKFSPD-GELYASGS-EDGTLRLWQTNV-------GKTYGLWK 204 (231)
Q Consensus 139 ~-~g~~d~~i~~~d~~~~~~~~~~~~----h~~~V~~v~~spd-~~~laS~s-~d~~v~iwd~~~-------~~~~~~~~ 204 (231)
+ ++..+.+|.+||..+++++..+.. |.+....+ ++|+ +.+++|+. .|++|+|||+.+ .+..+.++
T Consensus 339 ~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~ 417 (543)
T 1nir_A 339 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ 417 (543)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE
Confidence 5 455688999999999998887764 54433333 5787 67788876 689999999988 78888887
Q ss_pred ccCCcccCCCCCCcccccc
Q psy6442 205 CIEGGLNNSLGLDSSGHLN 223 (231)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~ 223 (231)
.. +..+.+|.+.++|+.+
T Consensus 418 ~~-g~~~~~v~~~pdg~~l 435 (543)
T 1nir_A 418 GQ-GGGSLFIKTHPKSSHL 435 (543)
T ss_dssp CS-CSCCCCEECCTTCCEE
T ss_pred cC-CCCceEEEcCCCCCcE
Confidence 53 3446677777777654
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.74 E-value=6.3e-17 Score=144.98 Aligned_cols=199 Identities=12% Similarity=-0.003 Sum_probs=144.2
Q ss_pred CceeeeccCCCeEeeeeccccc------------------------EEEEEECCCCceeEeccccccccCCCEEEEEeCC
Q psy6442 6 KPMLRQGDTGDWIGTFEGHKGC------------------------VWGVDINKDASKAASGAADFQAKNNTRLISCAED 61 (231)
Q Consensus 6 ~~~~~~~~~g~~i~~l~gH~~~------------------------V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D 61 (231)
++++|+..+|+....+..|... |.+++|+|||+. |++++.
T Consensus 65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~---------------l~~~~~- 128 (741)
T 2ecf_A 65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQR---------------LLFPLG- 128 (741)
T ss_dssp EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSE---------------EEEEET-
T ss_pred EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCE---------------EEEEeC-
Confidence 8999999999988777765433 788999998654 555554
Q ss_pred CCEEEEeCCCC---CceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccce-eE------------
Q psy6442 62 KTVRLWDVSAS---AEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQ-VH------------ 125 (231)
Q Consensus 62 ~ti~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~------------ 125 (231)
++|++||+.++ ...........+..++|+||++.++...++.|.+||..+.+..+....... +.
T Consensus 129 ~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~ 208 (741)
T 2ecf_A 129 GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEM 208 (741)
T ss_dssp TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHS
T ss_pred CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeeeecc
Confidence 89999999987 544333345678899999999988877778999999987665543322211 00
Q ss_pred --EEEEEecCCCCEEEEecCCC---------------------------------eEEEEeCCC-cceeeecc--CCCCC
Q psy6442 126 --SASLLLNSERPIFVCGGEDL---------------------------------KMYKFDYST-GAEIESFK--GHFGP 167 (231)
Q Consensus 126 --~~~~~~~~~~~~~~~g~~d~---------------------------------~i~~~d~~~-~~~~~~~~--~h~~~ 167 (231)
...+.++|+++.+++++.|. .|++||+.+ ++...... .|...
T Consensus 209 ~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 288 (741)
T 2ecf_A 209 DRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIY 288 (741)
T ss_dssp CCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEE
T ss_pred ccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceE
Confidence 12244589999888876554 789999988 76544332 47788
Q ss_pred eeEEEEcCCCCEEEEeeC-----CCcEEEEeCCCCCeeeeeeccCCcc---cCCCCCCcccc
Q psy6442 168 IHCVKFSPDGELYASGSE-----DGTLRLWQTNVGKTYGLWKCIEGGL---NNSLGLDSSGH 221 (231)
Q Consensus 168 V~~v~~spd~~~laS~s~-----d~~v~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 221 (231)
+.+++| |||++|+.++. +..|++||+.+++...+++...+.+ ...++|.++|+
T Consensus 289 ~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~ 349 (741)
T 2ecf_A 289 LARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS 349 (741)
T ss_dssp EEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC
T ss_pred EEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe
Confidence 999999 99999887653 6779999999999877776544332 23556666665
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.74 E-value=5.6e-16 Score=125.55 Aligned_cols=178 Identities=8% Similarity=0.048 Sum_probs=133.1
Q ss_pred CCCceeeeccCCCe-EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCC-C--CEEEEeCCCCCceEEEE
Q psy6442 4 DGKPMLRQGDTGDW-IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAED-K--TVRLWDVSASAEVQKLE 79 (231)
Q Consensus 4 d~~~~~~~~~~g~~-i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D-~--ti~iwd~~~~~~~~~~~ 79 (231)
+++|++|+..+++. ...+..+..+..++.|+|+++. |+++..+ + +|.+||+.+++.+..+.
T Consensus 61 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~---------------l~~~~~~~~~~~i~v~d~~~~~~~~~~~ 125 (331)
T 3u4y_A 61 CQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQF---------------AVTVTGLNHPFNMQSYSFLKNKFISTIP 125 (331)
T ss_dssp TCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSE---------------EEECCCSSSSCEEEEEETTTTEEEEEEE
T ss_pred CCeEEEEECCCCceeEEecccCCCCccceEECCCCCE---------------EEEecCCCCcccEEEEECCCCCeEEEEE
Confidence 67899999999998 8888888777766999998654 4533334 2 89999999998888888
Q ss_pred eCCcceeEEEccCCCEEEEE--cCCe-EEEEECCCcceEEe-----eeccceeEEEEEEecCCCCE-EEEecCCCeEEEE
Q psy6442 80 FGAVPNSLEISRDGTTITVT--HGSC-VTFLDANSLELIKE-----HKVPAQVHSASLLLNSERPI-FVCGGEDLKMYKF 150 (231)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~--~~~~-i~~~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~g~~d~~i~~~ 150 (231)
....+..++++|+++.++++ .++. +.+|+......+.. ........ .+.++|+++. ++++..++.|++|
T Consensus 126 ~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~spdg~~l~v~~~~~~~v~v~ 203 (331)
T 3u4y_A 126 IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPF--NITFTPDGNFAFVANLIGNSIGIL 203 (331)
T ss_dssp CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEE--EEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCcc--ceEECCCCCEEEEEeCCCCeEEEE
Confidence 77788999999999866654 3366 99999765332211 11112233 3445889985 4555678999999
Q ss_pred eCCCcce---eeeccCCCCCeeEEEEcCCCCEEE-EeeCCCcEEEEeCCCCCe
Q psy6442 151 DYSTGAE---IESFKGHFGPIHCVKFSPDGELYA-SGSEDGTLRLWQTNVGKT 199 (231)
Q Consensus 151 d~~~~~~---~~~~~~h~~~V~~v~~spd~~~la-S~s~d~~v~iwd~~~~~~ 199 (231)
|+.+++. +..+..+ ..+..++|+|||++|+ +...++.|.+||..+++.
T Consensus 204 d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 204 ETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp ECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred ECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 9998887 7777644 5678999999999654 445688899999999887
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.73 E-value=1.6e-16 Score=141.64 Aligned_cols=201 Identities=9% Similarity=0.046 Sum_probs=137.2
Q ss_pred cCCCceeeeccCCCeE-eeeeccc-----------------ccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCE
Q psy6442 3 VDGKPMLRQGDTGDWI-GTFEGHK-----------------GCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTV 64 (231)
Q Consensus 3 ~d~~~~~~~~~~g~~i-~~l~gH~-----------------~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti 64 (231)
.|+ | +|+..+|+.+ ..+..|. ..|.+++|+|+ +.+ +++ .|++|
T Consensus 43 ~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~--------------~~~--~~~~i 103 (706)
T 2z3z_A 43 GDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLV--------------VLF--TQGGL 103 (706)
T ss_dssp TTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEE--------------EEE--ETTEE
T ss_pred CCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeE--------------EEE--ECCEE
Confidence 355 7 9999999885 5666554 45999999997 432 233 35999
Q ss_pred EEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCC-----cceEEeeeccce-e------------EE
Q psy6442 65 RLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS-----LELIKEHKVPAQ-V------------HS 126 (231)
Q Consensus 65 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~-----~~~~~~~~~~~~-~------------~~ 126 (231)
++||+.+++..........+..++|+||++.++...++.|.+|+..+ .+..+....... + ..
T Consensus 104 ~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~ 183 (706)
T 2z3z_A 104 VGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIE 183 (706)
T ss_dssp EEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCC
T ss_pred EEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCC
Confidence 99999988766555555678899999999988888889999999877 555443222211 1 01
Q ss_pred EEEEecCCCCEEEEec---------------------------------CCCeEEEEeCCCcceeeec--cCCCCCeeEE
Q psy6442 127 ASLLLNSERPIFVCGG---------------------------------EDLKMYKFDYSTGAEIESF--KGHFGPIHCV 171 (231)
Q Consensus 127 ~~~~~~~~~~~~~~g~---------------------------------~d~~i~~~d~~~~~~~~~~--~~h~~~V~~v 171 (231)
..+.++|+++.+++++ .+..|++||+.+++..... ..|...+.++
T Consensus 184 ~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 263 (706)
T 2z3z_A 184 KGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNL 263 (706)
T ss_dssp CSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEE
T ss_pred ceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeE
Confidence 2334589999998876 4467999999887754443 2577789999
Q ss_pred EEcCCCCEEEEeeCCC-----cEEEEeCCCCC-eeeeeeccCCcc---cCCCCCCc--cccc
Q psy6442 172 KFSPDGELYASGSEDG-----TLRLWQTNVGK-TYGLWKCIEGGL---NNSLGLDS--SGHL 222 (231)
Q Consensus 172 ~~spd~~~laS~s~d~-----~v~iwd~~~~~-~~~~~~~~~~~~---~~~~~~~~--~~~~ 222 (231)
+|+|||++|++++.++ .|++||+.+++ ...+.......+ ...+.|.+ +|++
T Consensus 264 ~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~ 325 (706)
T 2z3z_A 264 SWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF 325 (706)
T ss_dssp EECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEE
T ss_pred EEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEE
Confidence 9999999999988776 89999999994 333333222222 24456666 6653
No 144
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.72 E-value=9.3e-16 Score=124.69 Aligned_cols=195 Identities=12% Similarity=0.074 Sum_probs=133.6
Q ss_pred cCCCceeeeccCCCeEeeeeccc------ccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC---
Q psy6442 3 VDGKPMLRQGDTGDWIGTFEGHK------GCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA--- 73 (231)
Q Consensus 3 ~d~~~~~~~~~~g~~i~~l~gH~------~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~--- 73 (231)
.+++|++|+..+++.+..+..+. ..+..+.|+|+++.++.+..+........ ...+++|.+||+.+++
T Consensus 63 ~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~---~~~~~~i~~~d~~~~~~~~ 139 (349)
T 1jmx_B 63 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY---VVKPPRLEVFSTADGLEAK 139 (349)
T ss_dssp TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE---EECCCEEEEEEGGGGGGBC
T ss_pred CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccccccc---ccCCCeEEEEECCCccccc
Confidence 57889999999998887776332 23678899998765443322100000000 0114899999998743
Q ss_pred ceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccc-------------------------ee----
Q psy6442 74 EVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPA-------------------------QV---- 124 (231)
Q Consensus 74 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------------------------~~---- 124 (231)
.+........+.+++++|+++ +++. +..+.+||..+.+....+.... ..
T Consensus 140 ~~~~~~~~~~~~~~~~s~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (349)
T 1jmx_B 140 PVRTFPMPRQVYLMRAADDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 217 (349)
T ss_dssp CSEEEECCSSCCCEEECTTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred eeeeccCCCcccceeECCCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence 334455556688999999999 6554 3459999988776655433221 00
Q ss_pred --------------------------------------EEEEEEecC-CCCEEEEecCCCeEEEEeCCCcceeeeccCCC
Q psy6442 125 --------------------------------------HSASLLLNS-ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHF 165 (231)
Q Consensus 125 --------------------------------------~~~~~~~~~-~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~ 165 (231)
....+.++| ++..++++ ++.|++||+.+++.+..+.. .
T Consensus 218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~ 294 (349)
T 1jmx_B 218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-D 294 (349)
T ss_dssp EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-S
T ss_pred ecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-C
Confidence 011222357 88887777 78999999999888777653 3
Q ss_pred CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442 166 GPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 166 ~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~ 205 (231)
..+.+++|+|++++|++++.++.|++||+.+++....++.
T Consensus 295 ~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 295 HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 4578999999998888888899999999999998877764
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.71 E-value=2e-15 Score=122.33 Aligned_cols=177 Identities=11% Similarity=0.116 Sum_probs=123.1
Q ss_pred CcCCCceeeecc-CCC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCC-CCEEEEeCC--CCCc-
Q psy6442 2 CVDGKPMLRQGD-TGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAED-KTVRLWDVS--ASAE- 74 (231)
Q Consensus 2 ~~d~~~~~~~~~-~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D-~ti~iwd~~--~~~~- 74 (231)
+.|+.|++|+.+ +|+ .+.. ..|.+.+..++|+|+++. |++++.+ ++|++|++. +++.
T Consensus 12 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~---------------l~~~~~~~~~v~~~~~~~~~~~~~ 75 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRY---------------LYVGVRPEFRVLAYRIAPDDGALT 75 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSE---------------EEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCE---------------EEEeecCCCeEEEEEecCCCCcee
Confidence 468999999984 453 3443 347778899999998554 5666665 999999987 4443
Q ss_pred -eEEEEeCCcceeEEEccCCCEEEEEc--CCeEEEEECC---CcceEEeeeccceeEEEEEEecCCCCEEEEec-CCCeE
Q psy6442 75 -VQKLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDAN---SLELIKEHKVPAQVHSASLLLNSERPIFVCGG-EDLKM 147 (231)
Q Consensus 75 -~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~d~~i 147 (231)
+..+.....+..++++|+++.++++. ++.+.+||.. .............+..+. ++|++..+++++ .++.|
T Consensus 76 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~s~dg~~l~~~~~~~~~v 153 (343)
T 1ri6_A 76 FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSAN--ISPDNRTLWVPALKQDRI 153 (343)
T ss_dssp EEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCE--ECTTSSEEEEEEGGGTEE
T ss_pred eccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEE--ECCCCCEEEEecCCCCEE
Confidence 33444455789999999999876653 5789999983 333333333333333333 488888776665 88999
Q ss_pred EEEeCCC-cceee----eccC-CCCCeeEEEEcCCCCEEE-EeeCCCcEEEEeCCC
Q psy6442 148 YKFDYST-GAEIE----SFKG-HFGPIHCVKFSPDGELYA-SGSEDGTLRLWQTNV 196 (231)
Q Consensus 148 ~~~d~~~-~~~~~----~~~~-h~~~V~~v~~spd~~~la-S~s~d~~v~iwd~~~ 196 (231)
++||+.+ ++... .+.. ....+..++|+|++++++ ++..++.|++|++..
T Consensus 154 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 154 CLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp EEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred EEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 9999976 54322 2222 235788999999999664 555899999999953
No 146
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=3.2e-15 Score=123.66 Aligned_cols=198 Identities=12% Similarity=0.197 Sum_probs=143.8
Q ss_pred cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEe----------CCCCEEEEeCCCC
Q psy6442 3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCA----------EDKTVRLWDVSAS 72 (231)
Q Consensus 3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s----------~D~ti~iwd~~~~ 72 (231)
.|++|++||..+++.+.++..+..+ .+.|+|+++.+ ++++ .|++|.+||..+.
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~l---------------yv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKI---------------YTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEE---------------EEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEE---------------EEEEecccccccCCCCCEEEEEECcCC
Confidence 4789999999999999999887776 89999987654 4443 3678999999998
Q ss_pred CceEEEEeC-------CcceeEEEccCCCEEEEEc---CCeEEEEECCCcceEEe-eecc--------------------
Q psy6442 73 AEVQKLEFG-------AVPNSLEISRDGTTITVTH---GSCVTFLDANSLELIKE-HKVP-------------------- 121 (231)
Q Consensus 73 ~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~-~~~~-------------------- 121 (231)
+.+..+... ..+..++++|+++.++++. ++.+.+||..+.+.+.. +..+
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~ 171 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICG 171 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEET
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECC
Confidence 888888753 4578999999999998763 46899999876655444 1110
Q ss_pred ------------ceeE-------------------------------------EEE------------------------
Q psy6442 122 ------------AQVH-------------------------------------SAS------------------------ 128 (231)
Q Consensus 122 ------------~~~~-------------------------------------~~~------------------------ 128 (231)
.... .+.
T Consensus 172 dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 251 (361)
T 2oiz_A 172 DGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNW 251 (361)
T ss_dssp TSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTC
T ss_pred CCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccc
Confidence 0000 000
Q ss_pred -------EEecCCCCEEEEecC-----------CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEE
Q psy6442 129 -------LLLNSERPIFVCGGE-----------DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLR 190 (231)
Q Consensus 129 -------~~~~~~~~~~~~g~~-----------d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~ 190 (231)
+.+++++..+..... ..+|++||..+++.+.++..+. +.+++|+|||++|+++.. ++|.
T Consensus 252 ~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~ 328 (361)
T 2oiz_A 252 VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVN 328 (361)
T ss_dssp EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEE
T ss_pred ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEE
Confidence 112334343333221 3479999999999999988776 999999999999988887 9999
Q ss_pred EEeCCCC--CeeeeeeccCCcccCCCCCCcccc
Q psy6442 191 LWQTNVG--KTYGLWKCIEGGLNNSLGLDSSGH 221 (231)
Q Consensus 191 iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 221 (231)
|||..++ +..+.... .+..+.-+.+.++|.
T Consensus 329 v~D~~t~~l~~~~~i~~-~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 329 VYDISQPEPKLLRTIEG-AAEASLQVQFHPVGG 360 (361)
T ss_dssp EEECSSSSCEEEEEETT-SCSSEEEEEECCCSC
T ss_pred EEECCCCcceeeEEecc-CCCCcEEEEecCCCC
Confidence 9999999 87766533 355566667776664
No 147
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.70 E-value=3.4e-15 Score=120.92 Aligned_cols=201 Identities=10% Similarity=0.098 Sum_probs=128.0
Q ss_pred CCCceeeecc--CCCe--EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCC---CCCceE
Q psy6442 4 DGKPMLRQGD--TGDW--IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVS---ASAEVQ 76 (231)
Q Consensus 4 d~~~~~~~~~--~g~~--i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~---~~~~~~ 76 (231)
++++++|+.+ +|++ +..+..+. .+..+.|+|+++.+ ++++..+++|.+||+. ..+...
T Consensus 59 ~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l--------------~~~~~~~~~i~~~d~~~~~~~~~~~ 123 (343)
T 1ri6_A 59 EFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFV--------------FVGSYNAGNVSVTRLEDGLPVGVVD 123 (343)
T ss_dssp TTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEE--------------EEEETTTTEEEEEEEETTEEEEEEE
T ss_pred CCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEE--------------EEEecCCCeEEEEECCCCccccccc
Confidence 3788999886 6663 44555444 77888999876542 2344458899999994 333344
Q ss_pred EEEeCCcceeEEEccCCCEEEEE--cCCeEEEEECCC-cceEE----eeeccceeEEEEEEecCCCCEEE-EecCCCeEE
Q psy6442 77 KLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDANS-LELIK----EHKVPAQVHSASLLLNSERPIFV-CGGEDLKMY 148 (231)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~g~~d~~i~ 148 (231)
.+.....+..++|+|+++.++++ .++.+.+||... ..... ....+.......+.++|++..++ ++..++.++
T Consensus 124 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~ 203 (343)
T 1ri6_A 124 VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVD 203 (343)
T ss_dssp EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred cccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEE
Confidence 44445678899999999977765 468999999876 43322 22222111222344588888654 555789999
Q ss_pred EEeCCC--cce--eee---cc-CC--CCCeeEEEEcCCCCEEE-EeeCCCcEEEEeCC--CCC--eeeeeeccCCcccCC
Q psy6442 149 KFDYST--GAE--IES---FK-GH--FGPIHCVKFSPDGELYA-SGSEDGTLRLWQTN--VGK--TYGLWKCIEGGLNNS 213 (231)
Q Consensus 149 ~~d~~~--~~~--~~~---~~-~h--~~~V~~v~~spd~~~la-S~s~d~~v~iwd~~--~~~--~~~~~~~~~~~~~~~ 213 (231)
+|++.. ++. ... +. ++ ...+.+++|+|++++|+ ++..++.|++|++. +++ ....... ......
T Consensus 204 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~--~~~~~~ 281 (343)
T 1ri6_A 204 VWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT--ETQPRG 281 (343)
T ss_dssp EEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC--SSSCCC
T ss_pred EEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC--CCccce
Confidence 999853 332 222 22 11 23566899999998665 56689999999998 332 3333332 222556
Q ss_pred CCCCcccc
Q psy6442 214 LGLDSSGH 221 (231)
Q Consensus 214 ~~~~~~~~ 221 (231)
++++++|+
T Consensus 282 ~~~s~dg~ 289 (343)
T 1ri6_A 282 FNVDHSGK 289 (343)
T ss_dssp EEECTTSS
T ss_pred EEECCCCC
Confidence 67776665
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.70 E-value=2.7e-16 Score=137.49 Aligned_cols=188 Identities=11% Similarity=0.064 Sum_probs=135.7
Q ss_pred CCCceeeeccCCCeEeeeeccc-ccEEEEEECCCCceeEeccc---cc-------cc---------------------cC
Q psy6442 4 DGKPMLRQGDTGDWIGTFEGHK-GCVWGVDINKDASKAASGAA---DF-------QA---------------------KN 51 (231)
Q Consensus 4 d~~~~~~~~~~g~~i~~l~gH~-~~V~~~~~~~~~~~~~s~~~---d~-------~~---------------------~~ 51 (231)
||+++||...+|+..+ +..|. ..|..+.|+|+ +.++++.. +. .. .+
T Consensus 43 ~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~d 120 (582)
T 3o4h_A 43 EGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDT 120 (582)
T ss_dssp TTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCSBEEEEEEEC
T ss_pred CCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccccCCCCceeeeeCCC
Confidence 8999999987665554 55555 68999999998 76665443 10 00 02
Q ss_pred C-CEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEE-EcC----CeEEEEECCCcceEEeeeccceeE
Q psy6442 52 N-TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV-THG----SCVTFLDANSLELIKEHKVPAQVH 125 (231)
Q Consensus 52 ~-~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~----~~i~~~d~~~~~~~~~~~~~~~~~ 125 (231)
+ ..+++.+.++.+.+||+.+++......... .+++++|||+.++. +.+ ..+.+||..+.+..........+.
T Consensus 121 g~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~ 198 (582)
T 3o4h_A 121 GEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFS 198 (582)
T ss_dssp SSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEE
T ss_pred CCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccc
Confidence 3 234444444555699998887655544443 88999999998874 333 578899987766543333333343
Q ss_pred EEEEEecCCCCEEEEecCCC--eEEEEeCCCcceeeeccCCCCCeeEEE--------EcCCCCEEEEeeCCCcEEEEeCC
Q psy6442 126 SASLLLNSERPIFVCGGEDL--KMYKFDYSTGAEIESFKGHFGPIHCVK--------FSPDGELYASGSEDGTLRLWQTN 195 (231)
Q Consensus 126 ~~~~~~~~~~~~~~~g~~d~--~i~~~d~~~~~~~~~~~~h~~~V~~v~--------~spd~~~laS~s~d~~v~iwd~~ 195 (231)
...++|+++.++++..++ +|++||+.+++.. .+.+|...+..++ |+|||.++++++.|++++||++
T Consensus 199 --~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~- 274 (582)
T 3o4h_A 199 --SASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID- 274 (582)
T ss_dssp --EEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET-
T ss_pred --cceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE-
Confidence 344599999999877788 8999999988877 7788888888888 9999999999999999999999
Q ss_pred CCCee
Q psy6442 196 VGKTY 200 (231)
Q Consensus 196 ~~~~~ 200 (231)
|+..
T Consensus 275 -g~~~ 278 (582)
T 3o4h_A 275 -GERV 278 (582)
T ss_dssp -TEEE
T ss_pred -CCee
Confidence 6544
No 149
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.67 E-value=3.4e-15 Score=126.51 Aligned_cols=166 Identities=9% Similarity=0.017 Sum_probs=118.4
Q ss_pred ccccEEEEEECCCCceeEeccccccccCCCEEE----EEeCCCCEEEEeCCCC--------CceEEEE----eCCcceeE
Q psy6442 24 HKGCVWGVDINKDASKAASGAADFQAKNNTRLI----SCAEDKTVRLWDVSAS--------AEVQKLE----FGAVPNSL 87 (231)
Q Consensus 24 H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~----s~s~D~ti~iwd~~~~--------~~~~~~~----~~~~~~~v 87 (231)
|.+.|.+++|+|++++ |+ +++.|++|+|||+.++ +.+..+. +...+.++
T Consensus 91 ~~~~v~~l~~spdg~~---------------lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 155 (434)
T 2oit_A 91 MKFPIHHLALSCDNLT---------------LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDM 155 (434)
T ss_dssp CSSCEEEEEECTTSCE---------------EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEE
T ss_pred CCCcccEEEEcCCCCE---------------EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEE
Confidence 5667999999998654 55 7889999999998654 2223333 35679999
Q ss_pred EEccC-CCEEE-EEcCCeEEEEECCCcceEEeeec-cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCC
Q psy6442 88 EISRD-GTTIT-VTHGSCVTFLDANSLELIKEHKV-PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGH 164 (231)
Q Consensus 88 ~~~~~-~~~~~-~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h 164 (231)
+|+|+ +..++ ++.++.+++||.++......... ...+.++++ ++++..+++|+.|++|++||.+ ++....+..|
T Consensus 156 ~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~w--spdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~ 232 (434)
T 2oit_A 156 KWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCW--SPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCP 232 (434)
T ss_dssp EECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEE--CTTSSCEEEEETTSCEEEECTT-CCEEEEECCC
T ss_pred EECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEE--cCCCCEEEEEcCCCcEEEEccC-CcccccccCC
Confidence 99998 56555 46789999999987754433322 335555554 8899999999999999999997 4544444333
Q ss_pred -------CCCeeEEEEcCCCCEEEEee-CCC------cEEEEeCCCCCe--eeeeeccC
Q psy6442 165 -------FGPIHCVKFSPDGELYASGS-EDG------TLRLWQTNVGKT--YGLWKCIE 207 (231)
Q Consensus 165 -------~~~V~~v~~spd~~~laS~s-~d~------~v~iwd~~~~~~--~~~~~~~~ 207 (231)
...|.+++|++++.++++.+ .|| .+++|++...+. -..|+.+.
T Consensus 233 ~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~ 291 (434)
T 2oit_A 233 PFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFM 291 (434)
T ss_dssp TTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECC
T ss_pred cccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecc
Confidence 34899999999988775543 443 389999986542 24555543
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.66 E-value=2.5e-14 Score=116.80 Aligned_cols=202 Identities=15% Similarity=0.170 Sum_probs=128.6
Q ss_pred CCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEe-CCCCEEEEeCCC-CCc--eEE
Q psy6442 4 DGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCA-EDKTVRLWDVSA-SAE--VQK 77 (231)
Q Consensus 4 d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s-~D~ti~iwd~~~-~~~--~~~ 77 (231)
++.|++|+..+|+ .+..+..|...+..++|+|+++. |++++ .+++|++|++.. +.. +..
T Consensus 62 ~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~---------------l~~~~~~~~~v~v~~~~~~g~~~~~~~ 126 (347)
T 3hfq_A 62 EGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQL---------------VYSANYHKGTAEVMKIAADGALTLTDT 126 (347)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTE---------------EEEEETTTTEEEEEEECTTSCEEEEEE
T ss_pred CceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCE---------------EEEEeCCCCEEEEEEeCCCCCeeecce
Confidence 6789999987776 45666667778888999998554 56666 679999999963 322 222
Q ss_pred EEeC----------CcceeEEEccCCCEEEEE-c-CCeEEEEECC-CcceEE--eeeccceeEEEEEEecCCCCEEE-Ee
Q psy6442 78 LEFG----------AVPNSLEISRDGTTITVT-H-GSCVTFLDAN-SLELIK--EHKVPAQVHSASLLLNSERPIFV-CG 141 (231)
Q Consensus 78 ~~~~----------~~~~~v~~~~~~~~~~~~-~-~~~i~~~d~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~g 141 (231)
+... ..+..++++|+++ ++++ . ++.+.+|+.. +..... ....+.......+.++|+++.++ +.
T Consensus 127 ~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~ 205 (347)
T 3hfq_A 127 VQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAG 205 (347)
T ss_dssp EECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred eecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEe
Confidence 2221 1366899999999 5554 3 5689999987 333222 12222111122344589998554 45
Q ss_pred cCCCeEEEEeCCC--cce--eeeccCCC------CCeeEEEEcCCCCEE-EEeeCCCcEEEEeCCCC---CeeeeeeccC
Q psy6442 142 GEDLKMYKFDYST--GAE--IESFKGHF------GPIHCVKFSPDGELY-ASGSEDGTLRLWQTNVG---KTYGLWKCIE 207 (231)
Q Consensus 142 ~~d~~i~~~d~~~--~~~--~~~~~~h~------~~V~~v~~spd~~~l-aS~s~d~~v~iwd~~~~---~~~~~~~~~~ 207 (231)
..++.+++|++.. ++. +..+.... ..+..++|+|||++| ++...++.|.+|++... +....... .
T Consensus 206 ~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~ 284 (347)
T 3hfq_A 206 ELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST-E 284 (347)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC-S
T ss_pred CCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec-C
Confidence 6778899998763 432 22322222 348889999999966 66677999999998732 22333322 2
Q ss_pred CcccCCCCCCccccc
Q psy6442 208 GGLNNSLGLDSSGHL 222 (231)
Q Consensus 208 ~~~~~~~~~~~~~~~ 222 (231)
+..+..++++++|+.
T Consensus 285 ~~~~~~~~~spdg~~ 299 (347)
T 3hfq_A 285 GDFPRDFDLDPTEAF 299 (347)
T ss_dssp SSCCCEEEECTTSSE
T ss_pred CCCcCeEEECCCCCE
Confidence 334566777777764
No 151
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.65 E-value=3.6e-15 Score=117.87 Aligned_cols=183 Identities=13% Similarity=0.056 Sum_probs=129.4
Q ss_pred cCCCceeeeccC-CCeEeeeeccc-ccEEEEEECCCCceeEecccc----cc-------------------------ccC
Q psy6442 3 VDGKPMLRQGDT-GDWIGTFEGHK-GCVWGVDINKDASKAASGAAD----FQ-------------------------AKN 51 (231)
Q Consensus 3 ~d~~~~~~~~~~-g~~i~~l~gH~-~~V~~~~~~~~~~~~~s~~~d----~~-------------------------~~~ 51 (231)
.+++|++|+..+ ++....+.+|. ..|.++.|+|+++.++.+..+ .. ..+
T Consensus 60 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spd 139 (297)
T 2ojh_A 60 SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPD 139 (297)
T ss_dssp ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTT
T ss_pred cCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCC
Confidence 478899999999 88888777774 788999999999988887621 00 015
Q ss_pred CCEEE-EEeCCCCEEEEeCC--CCCceEEEEeCCcceeEEEccCCCEEEEE--cCCeEEEEECC-CcceEEeeec-ccee
Q psy6442 52 NTRLI-SCAEDKTVRLWDVS--ASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDAN-SLELIKEHKV-PAQV 124 (231)
Q Consensus 52 ~~~l~-s~s~D~ti~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~-~~~~~~~~~~-~~~~ 124 (231)
++.|+ +++.|++++||++. .+...........+..++|+|++..+++. .++.+.+|+.. .......... ...+
T Consensus 140 g~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 219 (297)
T 2ojh_A 140 GKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGD 219 (297)
T ss_dssp SSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEE
T ss_pred CCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCccc
Confidence 66666 88899999999853 33332222334578899999999977654 35677777654 2233333322 2233
Q ss_pred EEEEEEecCCCCEEEEecCC-----------CeEEEEeCCCcce--eeeccCCCCCeeEEEEcCCCCEEEEeeCCC
Q psy6442 125 HSASLLLNSERPIFVCGGED-----------LKMYKFDYSTGAE--IESFKGHFGPIHCVKFSPDGELYASGSEDG 187 (231)
Q Consensus 125 ~~~~~~~~~~~~~~~~g~~d-----------~~i~~~d~~~~~~--~~~~~~h~~~V~~v~~spd~~~laS~s~d~ 187 (231)
. .+.++|++..+++++.+ ..|++||+.+++. +..+.+|...+.+++|+|++++|++++.+.
T Consensus 220 ~--~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 220 W--FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp E--EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred C--CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 3 34458899988877654 5699999987764 444557888999999999999988887654
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.65 E-value=8.6e-14 Score=114.33 Aligned_cols=218 Identities=13% Similarity=0.141 Sum_probs=136.7
Q ss_pred cCCCceeeec--cCCCeEeeeecccccEEEEEECCCCceeEecccc----ccc---------------------------
Q psy6442 3 VDGKPMLRQG--DTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD----FQA--------------------------- 49 (231)
Q Consensus 3 ~d~~~~~~~~--~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d----~~~--------------------------- 49 (231)
.++.+++|.. .+|++......|......+.|+|+++.++.++.+ ..+
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~ 104 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCY 104 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEE
T ss_pred CCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEE
Confidence 4567777765 5676543322266777788999999877766542 100
Q ss_pred --cCCCEEEEEe-CCCCEEEEeCCCCCce----EEEEeC-----------CcceeEEEccCCCEEEEEc--CCeEEEEEC
Q psy6442 50 --KNNTRLISCA-EDKTVRLWDVSASAEV----QKLEFG-----------AVPNSLEISRDGTTITVTH--GSCVTFLDA 109 (231)
Q Consensus 50 --~~~~~l~s~s-~D~ti~iwd~~~~~~~----~~~~~~-----------~~~~~v~~~~~~~~~~~~~--~~~i~~~d~ 109 (231)
.+++.|++++ .+++|.+|++.....+ ..+.+. ..+..++++|+++.++++. ++.+.+|+.
T Consensus 105 ~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 184 (361)
T 3scy_A 105 LTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNI 184 (361)
T ss_dssp EEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEE
Confidence 0456666666 5789999998754322 112221 1236799999999776653 578999986
Q ss_pred CCcce------E------EeeeccceeEEEEEEecCCCCEEEEec-CCCeEEEEeCCCcce--eee---ccCCCCCeeEE
Q psy6442 110 NSLEL------I------KEHKVPAQVHSASLLLNSERPIFVCGG-EDLKMYKFDYSTGAE--IES---FKGHFGPIHCV 171 (231)
Q Consensus 110 ~~~~~------~------~~~~~~~~~~~~~~~~~~~~~~~~~g~-~d~~i~~~d~~~~~~--~~~---~~~h~~~V~~v 171 (231)
..... + .....+.......+.++|+++.++..+ .++.|++|++.++.. +.. ...+...+..+
T Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i 264 (361)
T 3scy_A 185 NPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDI 264 (361)
T ss_dssp CTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEE
T ss_pred cCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccE
Confidence 64331 1 122222211222344589998776665 688999999886643 222 33444567899
Q ss_pred EEcCCCCEEEEeeC--CCcEEEEeCC--CCCe--eeeeeccCCcccCCCCCCccccc
Q psy6442 172 KFSPDGELYASGSE--DGTLRLWQTN--VGKT--YGLWKCIEGGLNNSLGLDSSGHL 222 (231)
Q Consensus 172 ~~spd~~~laS~s~--d~~v~iwd~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 222 (231)
+|+|||++|+.+.. ++.|+||++. +++. ...... +.....++++++|+.
T Consensus 265 ~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~~ 319 (361)
T 3scy_A 265 HLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNGKY 319 (361)
T ss_dssp EECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTSCE
T ss_pred EECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCCCE
Confidence 99999998866554 5899999985 5553 223332 445566778877764
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.64 E-value=2e-15 Score=134.61 Aligned_cols=185 Identities=12% Similarity=0.099 Sum_probs=128.5
Q ss_pred cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC-----CCceEE
Q psy6442 3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA-----SAEVQK 77 (231)
Q Consensus 3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~-----~~~~~~ 77 (231)
.|+++++|+..+|+... +..|.+.+..+.|+|+|+. |+++ .|++|++||+.+ ++....
T Consensus 99 ~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~---------------la~~-~~~~i~v~~~~~~~~~~g~~~~~ 161 (706)
T 2z3z_A 99 TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDR---------------VAYV-RNHNLYIARGGKLGEGMSRAIAV 161 (706)
T ss_dssp ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSE---------------EEEE-ETTEEEEEECBCTTSCCCCCEES
T ss_pred ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCE---------------EEEE-ECCeEEEEecCcccccCCCcEEe
Confidence 46889999998887655 5567788889999998655 4553 579999999988 765443
Q ss_pred EEeCCc---------------ceeEEEccCCCEEEEEc----------------------------------CCeEEEEE
Q psy6442 78 LEFGAV---------------PNSLEISRDGTTITVTH----------------------------------GSCVTFLD 108 (231)
Q Consensus 78 ~~~~~~---------------~~~v~~~~~~~~~~~~~----------------------------------~~~i~~~d 108 (231)
...... +..++|+||++.++... +..+.+||
T Consensus 162 ~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d 241 (706)
T 2z3z_A 162 TIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH 241 (706)
T ss_dssp CSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE
T ss_pred ccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE
Confidence 322222 47899999999877643 24788999
Q ss_pred CCCcceEEeeec-cceeEEEEEEecCCCCEEEEecCCC-----eEEEEeCCCcceeeecc--CCC---CCeeEEEEcC--
Q psy6442 109 ANSLELIKEHKV-PAQVHSASLLLNSERPIFVCGGEDL-----KMYKFDYSTGAEIESFK--GHF---GPIHCVKFSP-- 175 (231)
Q Consensus 109 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~-----~i~~~d~~~~~~~~~~~--~h~---~~V~~v~~sp-- 175 (231)
..+.+....... ........+.++|+++.+++++.+. .|++||..+++....+. .+. ..+.+++|+|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~ 321 (706)
T 2z3z_A 242 LATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGS 321 (706)
T ss_dssp TTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTC
T ss_pred CCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCC
Confidence 887665443321 1112223344589999888876654 89999998883333322 122 2357889999
Q ss_pred CCCEEEEeeCCCcEEEEeCC-CCCeeeeee
Q psy6442 176 DGELYASGSEDGTLRLWQTN-VGKTYGLWK 204 (231)
Q Consensus 176 d~~~laS~s~d~~v~iwd~~-~~~~~~~~~ 204 (231)
||+++++++.|+.++||.+. +++....++
T Consensus 322 dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~ 351 (706)
T 2z3z_A 322 NNQFIWQSRRDGWNHLYLYDTTGRLIRQVT 351 (706)
T ss_dssp SSEEEEEECTTSSCEEEEEETTSCEEEECC
T ss_pred CCEEEEEEccCCccEEEEEECCCCEEEecC
Confidence 99999999999999999876 555444443
No 154
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.63 E-value=8e-15 Score=131.34 Aligned_cols=178 Identities=11% Similarity=0.044 Sum_probs=126.6
Q ss_pred cccEEEEEECCCCceeEeccccccccCCCEEEEEeC-CC-----CEEEEeCCCCCceEEEEeC-----------------
Q psy6442 25 KGCVWGVDINKDASKAASGAADFQAKNNTRLISCAE-DK-----TVRLWDVSASAEVQKLEFG----------------- 81 (231)
Q Consensus 25 ~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~-D~-----ti~iwd~~~~~~~~~~~~~----------------- 81 (231)
...|.++.|+|||+ +|++++. |+ +|++||+.+++....+...
T Consensus 36 ~~~~~~~~~SpdG~---------------~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS---------------RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARR 100 (741)
T ss_dssp CCCCEEEEECTTSS---------------EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------
T ss_pred CCCCCCceEecCCC---------------EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhh
Confidence 34689999999855 4677777 87 8999999998876665432
Q ss_pred --------CcceeEEEccCCCEEEEEcCCeEEEEECCCc---ceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEE
Q psy6442 82 --------AVPNSLEISRDGTTITVTHGSCVTFLDANSL---ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKF 150 (231)
Q Consensus 82 --------~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~ 150 (231)
..+..++|+||++.++....+.+.+||..+. ...........+... .++|+++.+++++ +..|++|
T Consensus 101 ~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~--~~SPDG~~la~~~-~~~i~~~ 177 (741)
T 2ecf_A 101 ERQRIAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDA--KLSPKGGFVSFIR-GRNLWVI 177 (741)
T ss_dssp ------CCEESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEE--EECTTSSEEEEEE-TTEEEEE
T ss_pred hhhhhccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccc--cCCCCCCEEEEEe-CCcEEEE
Confidence 1267899999999888777799999998876 433322222334443 4589999988877 4589999
Q ss_pred eCCCcceeeeccCCCCC----------------eeEEEEcCCCCEEEEeeCCC---------------------------
Q psy6442 151 DYSTGAEIESFKGHFGP----------------IHCVKFSPDGELYASGSEDG--------------------------- 187 (231)
Q Consensus 151 d~~~~~~~~~~~~h~~~----------------V~~v~~spd~~~laS~s~d~--------------------------- 187 (231)
|+.+++.......+... +.+++|||||++|++++.|+
T Consensus 178 d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g 257 (741)
T 2ecf_A 178 DLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAG 257 (741)
T ss_dssp ETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTT
T ss_pred ecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCC
Confidence 99887766554444432 47899999999999998766
Q ss_pred ------cEEEEeCCC-CCeeeeeec-cCCcccCCCCCCcccc
Q psy6442 188 ------TLRLWQTNV-GKTYGLWKC-IEGGLNNSLGLDSSGH 221 (231)
Q Consensus 188 ------~v~iwd~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~ 221 (231)
.|.+||+.+ ++...+-.. -.......++| ++|+
T Consensus 258 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~ 298 (741)
T 2ecf_A 258 DANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQ 298 (741)
T ss_dssp SCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETT
T ss_pred CCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCC
Confidence 789999988 775433211 12233444556 6555
No 155
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.63 E-value=4.8e-15 Score=137.96 Aligned_cols=196 Identities=13% Similarity=0.062 Sum_probs=137.1
Q ss_pred CCCceeeeccCCCeEeeeec-----------ccccEEEEEEC-CCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC
Q psy6442 4 DGKPMLRQGDTGDWIGTFEG-----------HKGCVWGVDIN-KDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA 71 (231)
Q Consensus 4 d~~~~~~~~~~g~~i~~l~g-----------H~~~V~~~~~~-~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~ 71 (231)
++++++|+...+ .+..+.+ |.+.|.++.|+ |+|+. |++++ ++++.+|+...
T Consensus 264 ~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~---------------la~~~-~~~i~~~~~~~ 326 (1045)
T 1k32_A 264 GGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDL---------------IAFVS-RGQAFIQDVSG 326 (1045)
T ss_dssp TTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGC---------------EEEEE-TTEEEEECTTS
T ss_pred CCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCE---------------EEEEE-cCEEEEEcCCC
Confidence 567888887433 3445655 45578899999 98654 45555 78999999987
Q ss_pred CCceEEEEeCC-cceeEEEccCCCEEEE-EcCCeEE-EEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEE
Q psy6442 72 SAEVQKLEFGA-VPNSLEISRDGTTITV-THGSCVT-FLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMY 148 (231)
Q Consensus 72 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~-~~~~~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 148 (231)
+.......... .+..++|+ ++..++. +.+..+. +|+...............+.. +.++|+++.+++++.++.|+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~--~~~SpDG~~la~~~~~~~v~ 403 (1045)
T 1k32_A 327 TYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFA--MGVDRNGKFAVVANDRFEIM 403 (1045)
T ss_dssp SBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEE--EEECTTSSEEEEEETTSEEE
T ss_pred CceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceee--eEECCCCCEEEEECCCCeEE
Confidence 76443222334 67788999 8876655 4455677 788776554333322223333 44599999999999999999
Q ss_pred EEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCC----------cEEEEeCCCCCeeeeeeccCCcccCCCCCCc
Q psy6442 149 KFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG----------TLRLWQTNVGKTYGLWKCIEGGLNNSLGLDS 218 (231)
Q Consensus 149 ~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (231)
+||+.+++....+.+|...+.+++|||||++|++++.++ .|++||+.+++...+ .... .....++|.+
T Consensus 404 ~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l-~~~~-~~~~~~~~sp 481 (1045)
T 1k32_A 404 TVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTEN-SHDYAPAFDA 481 (1045)
T ss_dssp EEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SCSS-SBEEEEEECT
T ss_pred EEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe-eCCC-cccCCceEcC
Confidence 999999888777778999999999999999999887654 899999998874332 2211 1122345556
Q ss_pred ccc
Q psy6442 219 SGH 221 (231)
Q Consensus 219 ~~~ 221 (231)
+|+
T Consensus 482 dG~ 484 (1045)
T 1k32_A 482 DSK 484 (1045)
T ss_dssp TSC
T ss_pred CCC
Confidence 555
No 156
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.62 E-value=6.2e-14 Score=130.51 Aligned_cols=211 Identities=11% Similarity=0.124 Sum_probs=146.8
Q ss_pred CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccc---------------------------ccCCCEEEE
Q psy6442 5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ---------------------------AKNNTRLIS 57 (231)
Q Consensus 5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~---------------------------~~~~~~l~s 57 (231)
.+.++|....+.....+.+|.+.+.++.|+++ ..++++..+.. ..+++.|+.
T Consensus 183 ~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~ 261 (1045)
T 1k32_A 183 TRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILF 261 (1045)
T ss_dssp TCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEE
T ss_pred CcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEE
Confidence 34566654444555667899999999999987 44444332210 015566777
Q ss_pred EeCCCCEEEEeCCCCCceEEEEe------------CCcceeEEEc-cCCCEEEEEcCCeEEEEECCCcceEEeeeccc-e
Q psy6442 58 CAEDKTVRLWDVSASAEVQKLEF------------GAVPNSLEIS-RDGTTITVTHGSCVTFLDANSLELIKEHKVPA-Q 123 (231)
Q Consensus 58 ~s~D~ti~iwd~~~~~~~~~~~~------------~~~~~~v~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~ 123 (231)
+ .|+.|.+||+.... +..+.. ...+..++|+ |+++.++....+.+.+|+............+. .
T Consensus 262 ~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~ 339 (1045)
T 1k32_A 262 S-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIR 339 (1045)
T ss_dssp E-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEE
T ss_pred E-eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcce
Confidence 6 48899999984433 332221 1258899999 99998777668889999987665443222222 3
Q ss_pred eEEEEEEecCCCCEEEEecCCCeEE-EEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442 124 VHSASLLLNSERPIFVCGGEDLKMY-KFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL 202 (231)
Q Consensus 124 ~~~~~~~~~~~~~~~~~g~~d~~i~-~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~ 202 (231)
+.. ..++ ++..++.++.+..++ +|+...++.. .+.+|...+..++|||||++|++++.++.|++||+.+++...+
T Consensus 340 ~~~--~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~ 415 (1045)
T 1k32_A 340 YVR--RGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 415 (1045)
T ss_dssp EEE--ECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEe--eeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe
Confidence 333 3346 888888888888899 9998776544 4447888999999999999999999999999999999988776
Q ss_pred eeccCCcccCCCCCCcccccc
Q psy6442 203 WKCIEGGLNNSLGLDSSGHLN 223 (231)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~ 223 (231)
.+... .....++|+++|+.+
T Consensus 416 ~~~~~-~~v~~~~~SpDG~~l 435 (1045)
T 1k32_A 416 ERSRE-AMITDFTISDNSRFI 435 (1045)
T ss_dssp EECSS-SCCCCEEECTTSCEE
T ss_pred ccCCC-CCccceEECCCCCeE
Confidence 65422 233456677777643
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.60 E-value=6.7e-13 Score=108.31 Aligned_cols=184 Identities=17% Similarity=0.176 Sum_probs=121.1
Q ss_pred cCCCceeeecc-CCCe--Eeeeec---------ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCC
Q psy6442 3 VDGKPMLRQGD-TGDW--IGTFEG---------HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVS 70 (231)
Q Consensus 3 ~d~~~~~~~~~-~g~~--i~~l~g---------H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~ 70 (231)
.++++++|+.. +|+. +..+.. +...+.++.|+|+++ .+++...+++|++||+.
T Consensus 106 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~---------------l~v~~~~~~~v~~~~~~ 170 (347)
T 3hfq_A 106 HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR---------------LAVIDLGSDKVYVYNVS 170 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC---------------EEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc---------------EEEEeCCCCEEEEEEEC
Confidence 46788899874 3432 333321 112478889998864 35666678899999998
Q ss_pred -CCCceEE--EEe--CCcceeEEEccCCCEEEEE--cCCeEEEEECCC--cce--EEeeec-cce----eEEEEEEecCC
Q psy6442 71 -ASAEVQK--LEF--GAVPNSLEISRDGTTITVT--HGSCVTFLDANS--LEL--IKEHKV-PAQ----VHSASLLLNSE 134 (231)
Q Consensus 71 -~~~~~~~--~~~--~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~--~~~--~~~~~~-~~~----~~~~~~~~~~~ 134 (231)
+++.... +.. ...+..++|+|+++.+++. .++.+.+|+... ... ...... +.. .....+.++|+
T Consensus 171 ~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd 250 (347)
T 3hfq_A 171 DAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD 250 (347)
T ss_dssp TTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT
T ss_pred CCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC
Confidence 4443222 222 2367889999999977664 356888888653 322 122211 110 12333455899
Q ss_pred CCEE-EEecCCCeEEEEeCCC-c--ceeeeccCCCCCeeEEEEcCCCCEEEEeeC-CCcEEEE--eCCCCCeee
Q psy6442 135 RPIF-VCGGEDLKMYKFDYST-G--AEIESFKGHFGPIHCVKFSPDGELYASGSE-DGTLRLW--QTNVGKTYG 201 (231)
Q Consensus 135 ~~~~-~~g~~d~~i~~~d~~~-~--~~~~~~~~h~~~V~~v~~spd~~~laS~s~-d~~v~iw--d~~~~~~~~ 201 (231)
++.+ ++...++.|.+|++.. + +.+..+..+...+..++|+|||++|++++. ++.|.+| |..+|+...
T Consensus 251 G~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 251 GHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp SCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 9866 5556689999999863 2 445666667777899999999998877765 5899999 667787654
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.59 E-value=1.6e-14 Score=130.01 Aligned_cols=189 Identities=6% Similarity=-0.012 Sum_probs=126.1
Q ss_pred CCCceeeeccCCCeEeeeecccccE-----EEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE
Q psy6442 4 DGKPMLRQGDTGDWIGTFEGHKGCV-----WGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL 78 (231)
Q Consensus 4 d~~~~~~~~~~g~~i~~l~gH~~~V-----~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~ 78 (231)
||+|++|+..+|+....+.+|.... ..+.|+|||+.++.+..+..+.-. +..+.+.+||+.+++.....
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~------~~~~~~~~~d~~~~~~~~l~ 108 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRH------SYTASYDIYDLNKRQLITEE 108 (740)
T ss_dssp TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSS------CEEEEEEEEETTTTEECCSS
T ss_pred CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEE------ccceEEEEEECCCCcEEEcc
Confidence 7899999999999988888887543 336789987765433321111000 01145779999998765433
Q ss_pred EeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccce--eE---------------EEEEEecCCCCEEEEe
Q psy6442 79 EFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQ--VH---------------SASLLLNSERPIFVCG 141 (231)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~---------------~~~~~~~~~~~~~~~g 141 (231)
.....+...+|+|||+.++...++.|.+|+..+....+....... +. ...+.++|+++.++..
T Consensus 109 ~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~ 188 (740)
T 4a5s_A 109 RIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA 188 (740)
T ss_dssp CCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred cCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence 334567899999999988777788999999877654432211110 10 0113458999988876
Q ss_pred cCC------------------------------------CeEEEEeCCC---cc--eeeecc------CCCCCeeEEEEc
Q psy6442 142 GED------------------------------------LKMYKFDYST---GA--EIESFK------GHFGPIHCVKFS 174 (231)
Q Consensus 142 ~~d------------------------------------~~i~~~d~~~---~~--~~~~~~------~h~~~V~~v~~s 174 (231)
..| .+|++||+.+ ++ ....+. +|...+..++||
T Consensus 189 ~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws 268 (740)
T 4a5s_A 189 QFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA 268 (740)
T ss_dssp EEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE
T ss_pred EEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEe
Confidence 321 2588899987 62 122232 477789999999
Q ss_pred CCCCEEEEee----CCCcEEEEeCCCCC
Q psy6442 175 PDGELYASGS----EDGTLRLWQTNVGK 198 (231)
Q Consensus 175 pd~~~laS~s----~d~~v~iwd~~~~~ 198 (231)
|||++++... .+..|++||+.+|+
T Consensus 269 pdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 269 TQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp ETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred CCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 9999666553 23479999999887
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.59 E-value=1.5e-13 Score=112.84 Aligned_cols=184 Identities=12% Similarity=0.127 Sum_probs=117.7
Q ss_pred cCCCceeeeccCCCeEeeee---c-----------ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEe
Q psy6442 3 VDGKPMLRQGDTGDWIGTFE---G-----------HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWD 68 (231)
Q Consensus 3 ~d~~~~~~~~~~g~~i~~l~---g-----------H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd 68 (231)
.++++.+|+......+..+. . +...+.++.|+|+|+.+ +++...+++|++|+
T Consensus 118 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l--------------~~~~~~~~~v~v~~ 183 (361)
T 3scy_A 118 SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL--------------LADDLGTDQIHKFN 183 (361)
T ss_dssp TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE--------------EEEETTTTEEEEEE
T ss_pred CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE--------------EEEeCCCCEEEEEE
Confidence 46788888876443332221 1 12235788999886543 34455588999998
Q ss_pred CCCCCc------e------EEEE--eCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcce--EEeeec-cc-eeEEEE
Q psy6442 69 VSASAE------V------QKLE--FGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLEL--IKEHKV-PA-QVHSAS 128 (231)
Q Consensus 69 ~~~~~~------~------~~~~--~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~--~~~~~~-~~-~~~~~~ 128 (231)
+..... + .... ....+..++|+|+++.+++.. ++.+.+|+..+... +..... +. ......
T Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~ 263 (361)
T 3scy_A 184 INPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGD 263 (361)
T ss_dssp ECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEE
T ss_pred EcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCccc
Confidence 875442 2 1222 245678999999999877654 67899999875433 222211 11 011123
Q ss_pred EEecCCCCEEEEecC--CCeEEEEeCC--Ccc--eeeeccCCCCCeeEEEEcCCCCEEEEee-CCCcEEEE--eCCCCCe
Q psy6442 129 LLLNSERPIFVCGGE--DLKMYKFDYS--TGA--EIESFKGHFGPIHCVKFSPDGELYASGS-EDGTLRLW--QTNVGKT 199 (231)
Q Consensus 129 ~~~~~~~~~~~~g~~--d~~i~~~d~~--~~~--~~~~~~~h~~~V~~v~~spd~~~laS~s-~d~~v~iw--d~~~~~~ 199 (231)
+.++|+++.++.++. +..|.+|++. ++. .+..+.. ...+.+++|+|||++|++++ .++.|.+| |..+|+.
T Consensus 264 i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 264 IHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp EEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE
Confidence 445899998766554 4789999885 344 3444444 45788999999999887776 67999995 5567765
Q ss_pred ee
Q psy6442 200 YG 201 (231)
Q Consensus 200 ~~ 201 (231)
..
T Consensus 343 ~~ 344 (361)
T 3scy_A 343 TD 344 (361)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 160
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.58 E-value=5.6e-15 Score=131.89 Aligned_cols=178 Identities=13% Similarity=0.012 Sum_probs=123.6
Q ss_pred cEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC----cceeEEEccCCCEEEEEcC-
Q psy6442 27 CVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA----VPNSLEISRDGTTITVTHG- 101 (231)
Q Consensus 27 ~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~- 101 (231)
.+.++.|+|+|++ +++ +.|++|++||+.+++....+.... .+.+++|+||++.++....
T Consensus 18 ~~~~~~~spdg~~---------------~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~ 81 (723)
T 1xfd_A 18 HDPEAKWISDTEF---------------IYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNV 81 (723)
T ss_dssp CCCCCCBSSSSCB---------------CCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESC
T ss_pred cccccEEcCCCcE---------------EEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecC
Confidence 4667889998653 444 678999999999988776665433 3889999999998766532
Q ss_pred ---------CeEEEEECCCcceEEeeeccc---eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCe-
Q psy6442 102 ---------SCVTFLDANSLELIKEHKVPA---QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPI- 168 (231)
Q Consensus 102 ---------~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V- 168 (231)
+.+.+||..+.+......... .+.. ..++|+++.+++++. ..|++||..+++.......+...+
T Consensus 82 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~--~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~ 158 (723)
T 1xfd_A 82 EPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQY--AGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVI 158 (723)
T ss_dssp CCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSB--CCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTE
T ss_pred ccceeecceeeEEEEECCCCceEeccCCccccccccc--cEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCce
Confidence 678899988776522211111 1222 334899999988875 799999998887666555444333
Q ss_pred -----------------eEEEEcCCCCEEEEeeCCC----------------------------------cEEEEeCCCC
Q psy6442 169 -----------------HCVKFSPDGELYASGSEDG----------------------------------TLRLWQTNVG 197 (231)
Q Consensus 169 -----------------~~v~~spd~~~laS~s~d~----------------------------------~v~iwd~~~~ 197 (231)
.+++|||||++|++++.|+ .|++||+.++
T Consensus 159 ~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~ 238 (723)
T 1xfd_A 159 YNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP 238 (723)
T ss_dssp EEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred ECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC
Confidence 7899999999999988653 7999999888
Q ss_pred CeeeeeeccC-----CcccCCCCCCcccccc
Q psy6442 198 KTYGLWKCIE-----GGLNNSLGLDSSGHLN 223 (231)
Q Consensus 198 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 223 (231)
+....++... ......++|.++|+.+
T Consensus 239 ~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l 269 (723)
T 1xfd_A 239 THDLEMMPPDDPRMREYYITMVKWATSTKVA 269 (723)
T ss_dssp CCCEECCCCCCGGGSSEEEEEEEESSSSEEE
T ss_pred ceeEEeeCCccCCCccceeEEEEEeCCCeEE
Confidence 7433333211 2333456777777643
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.54 E-value=2.6e-13 Score=118.60 Aligned_cols=175 Identities=13% Similarity=0.078 Sum_probs=118.2
Q ss_pred cccEEEEEECCCCceeEeccc-cccc--------------------------cCCCEEEEEeC---CCCEEEEeCCC--C
Q psy6442 25 KGCVWGVDINKDASKAASGAA-DFQA--------------------------KNNTRLISCAE---DKTVRLWDVSA--S 72 (231)
Q Consensus 25 ~~~V~~~~~~~~~~~~~s~~~-d~~~--------------------------~~~~~l~s~s~---D~ti~iwd~~~--~ 72 (231)
..+|+++.|+|||+.+++++. +... ..++.+++++. +...+||.+.. .
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRP 100 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTST
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCC
Confidence 557888888888887776543 2110 12355666665 55667765533 2
Q ss_pred CceEEEEeCCcceeEEEccCCCE-EEE-EcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCC----Ce
Q psy6442 73 AEVQKLEFGAVPNSLEISRDGTT-ITV-THGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGED----LK 146 (231)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~~~~~~-~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d----~~ 146 (231)
.....+.........+++|++.. +++ ...+.+.+||..+.+.......+. ..+.++|+++.+++++.+ ..
T Consensus 101 g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~----~~~~~spDG~~la~~~~~~~~~~~ 176 (582)
T 3o4h_A 101 GEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG----FGFVSDIRGDLIAGLGFFGGGRVS 176 (582)
T ss_dssp TCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS----CEEEEEEETTEEEEEEEEETTEEE
T ss_pred CccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC----ceEEECCCCCEEEEEEEcCCCCeE
Confidence 22223222334456688888864 333 344556699987766544443333 234458899999987766 78
Q ss_pred EEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCC--cEEEEeCCCCCeeeeeec
Q psy6442 147 MYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG--TLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 147 i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~--~v~iwd~~~~~~~~~~~~ 205 (231)
|++||+.+++. ..+..|...+.+++|||||++|+++..++ .|++||+.+++.. +.+.
T Consensus 177 i~~~d~~~g~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~ 235 (582)
T 3o4h_A 177 LFTSNLSSGGL-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL 235 (582)
T ss_dssp EEEEETTTCCC-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC
T ss_pred EEEEcCCCCCc-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC
Confidence 99999987764 46678889999999999999999888898 8999999998876 5544
No 162
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.53 E-value=1.7e-12 Score=105.77 Aligned_cols=200 Identities=10% Similarity=0.052 Sum_probs=143.9
Q ss_pred CcCCCceeeeccCCCeEeeeec------ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCce
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEG------HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEV 75 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~g------H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~ 75 (231)
..+++|.++|..+++....+.. .......+.+.. +..+++...+++|.+||..+++.+
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~----------------~~lyv~~~~~~~v~viD~~t~~~~ 77 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD----------------GIGWIVVNNSHVIFAIDINTFKEV 77 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET----------------TEEEEEEGGGTEEEEEETTTCCEE
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC----------------CEEEEEEcCCCEEEEEECcccEEE
Confidence 4588999999999988776421 112345555422 334566666899999999999998
Q ss_pred EEEEeCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeeccc------eeEEEEEEecCCCCEEEEec-CCCe
Q psy6442 76 QKLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVPA------QVHSASLLLNSERPIFVCGG-EDLK 146 (231)
Q Consensus 76 ~~~~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~-~d~~ 146 (231)
.++.....+..+++++++ .++++. ++.+.++|..+.+....+.... ....+.+ .++.++++.. .+.+
T Consensus 78 ~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~---~~~~lyv~~~~~~~~ 153 (328)
T 3dsm_A 78 GRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ---YGKYVYVNCWSYQNR 153 (328)
T ss_dssp EEEECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE---ETTEEEEEECTTCCE
T ss_pred EEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE---ECCEEEEEcCCCCCE
Confidence 888766788999999998 555554 7899999999888776665443 3333333 2444455543 4789
Q ss_pred EEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCC----------CcEEEEeCCCCCeeeeeeccCCcccCCCCC
Q psy6442 147 MYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSED----------GTLRLWQTNVGKTYGLWKCIEGGLNNSLGL 216 (231)
Q Consensus 147 i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 216 (231)
|.++|..+++.+.++... .....++++|+|++++++..+ +.|.++|..+++....+..-.+..++.+++
T Consensus 154 v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~ 232 (328)
T 3dsm_A 154 ILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQL 232 (328)
T ss_dssp EEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEE
T ss_pred EEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEE
Confidence 999999998877776532 345789999999988888765 789999999998877776433446777788
Q ss_pred Cccccc
Q psy6442 217 DSSGHL 222 (231)
Q Consensus 217 ~~~~~~ 222 (231)
+++++.
T Consensus 233 ~~d~~~ 238 (328)
T 3dsm_A 233 NGTRDT 238 (328)
T ss_dssp CTTSCE
T ss_pred ecCCCE
Confidence 876653
No 163
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.53 E-value=2.6e-12 Score=104.62 Aligned_cols=201 Identities=12% Similarity=0.133 Sum_probs=138.6
Q ss_pred CCCceeeeccCCCeEeeee-cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC-ceEEEEe-
Q psy6442 4 DGKPMLRQGDTGDWIGTFE-GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA-EVQKLEF- 80 (231)
Q Consensus 4 d~~~~~~~~~~g~~i~~l~-gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~-~~~~~~~- 80 (231)
+++|++|+..+|+.+..+. ++-.....++++++|+ .+++...+++|++||..... .+..+..
T Consensus 68 ~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~---------------l~v~d~~~~~v~~~~~~g~~~~~~~~~~~ 132 (329)
T 3fvz_A 68 EDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN---------------YWVTDVALHQVFKLDPHSKEGPLLILGRS 132 (329)
T ss_dssp SCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC---------------EEEEETTTTEEEEECTTCSSCCSEEESBT
T ss_pred CCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC---------------EEEEECCCCEEEEEeCCCCeEEEEEeccc
Confidence 4679999998999887765 4556788899988754 46777778999999986542 4444421
Q ss_pred ---------CCcceeEEEcc-CCCEEEEE--cCCeEEEEECCCcceEEeeecc--------ce-eEEEEEEecCC-CCEE
Q psy6442 81 ---------GAVPNSLEISR-DGTTITVT--HGSCVTFLDANSLELIKEHKVP--------AQ-VHSASLLLNSE-RPIF 138 (231)
Q Consensus 81 ---------~~~~~~v~~~~-~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~--------~~-~~~~~~~~~~~-~~~~ 138 (231)
-..+..++++| ++..+++. .++.|..|+. +...+..+... .. .....+.++++ +.++
T Consensus 133 ~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~ 211 (329)
T 3fvz_A 133 MQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLC 211 (329)
T ss_dssp TBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEE
T ss_pred CCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEE
Confidence 12588999999 67666555 2578999994 44444443211 00 01223344777 7778
Q ss_pred EEecCCCeEEEEeCCCcceeeec--cCCCCCeeEEEEcC------CCCEEEEeeCCCcEEEEeCCCCCeeeeeec--cCC
Q psy6442 139 VCGGEDLKMYKFDYSTGAEIESF--KGHFGPIHCVKFSP------DGELYASGSEDGTLRLWQTNVGKTYGLWKC--IEG 208 (231)
Q Consensus 139 ~~g~~d~~i~~~d~~~~~~~~~~--~~h~~~V~~v~~sp------d~~~laS~s~d~~v~iwd~~~~~~~~~~~~--~~~ 208 (231)
++...+.+|++|+..+++.+..+ ..+...+.+++|+| +++.+++.+.+..|++|+..+++....+.. ..-
T Consensus 212 v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~ 291 (329)
T 3fvz_A 212 VADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHF 291 (329)
T ss_dssp EEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCC
T ss_pred EEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCcc
Confidence 88888999999999888888776 35667889999999 444444445566999999999998877742 122
Q ss_pred cccCCCCCCccc
Q psy6442 209 GLNNSLGLDSSG 220 (231)
Q Consensus 209 ~~~~~~~~~~~~ 220 (231)
..+..|+++++|
T Consensus 292 ~~p~~ia~~~dG 303 (329)
T 3fvz_A 292 DMPHDIVASEDG 303 (329)
T ss_dssp SSEEEEEECTTS
T ss_pred CCeeEEEECCCC
Confidence 345667777776
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.53 E-value=2e-12 Score=106.62 Aligned_cols=180 Identities=12% Similarity=0.110 Sum_probs=120.9
Q ss_pred cCCCceeeecc-CCCeEeeee----cccccEEEEEECCCCceeEeccccccccCCCEEEEEe-CCCCEEEEeCC-CCCce
Q psy6442 3 VDGKPMLRQGD-TGDWIGTFE----GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCA-EDKTVRLWDVS-ASAEV 75 (231)
Q Consensus 3 ~d~~~~~~~~~-~g~~i~~l~----gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s-~D~ti~iwd~~-~~~~~ 75 (231)
.+|++++|+.. +|++...+. .+...+.++.|+|+|+. |++++ .+++|++||+. +++..
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~---------------l~~~~~~~~~v~~~~~~~~g~~~ 181 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY---------------LYSADLTANKLWTHRKLASGEVE 181 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE---------------EEEEETTTTEEEEEEECTTSCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE---------------EEEEcCCCCEEEEEEECCCCCEE
Confidence 57889999986 577765554 25567899999998654 44444 46789999998 66543
Q ss_pred --EEEEe---CCcceeEEEccCCCEEEEEc--CCeEEEEECC--CcceE---Eeee-ccce----e-------EEEEEE-
Q psy6442 76 --QKLEF---GAVPNSLEISRDGTTITVTH--GSCVTFLDAN--SLELI---KEHK-VPAQ----V-------HSASLL- 130 (231)
Q Consensus 76 --~~~~~---~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~--~~~~~---~~~~-~~~~----~-------~~~~~~- 130 (231)
..+.. ...+..++|+|+++.+++.. ++.+.+|+.. +.+.. .... .+.. . ....+.
T Consensus 182 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 261 (365)
T 1jof_A 182 LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEE
Confidence 22332 34688999999999887654 4688888754 33322 1111 1110 1 233444
Q ss_pred ecCCCCEEEEecCC-C-----eEEEEeCC-Ccceee---eccCCCCCeeEEEEcC---CCCEEEEeeC-CCcEEEEeCCC
Q psy6442 131 LNSERPIFVCGGED-L-----KMYKFDYS-TGAEIE---SFKGHFGPIHCVKFSP---DGELYASGSE-DGTLRLWQTNV 196 (231)
Q Consensus 131 ~~~~~~~~~~g~~d-~-----~i~~~d~~-~~~~~~---~~~~h~~~V~~v~~sp---d~~~laS~s~-d~~v~iwd~~~ 196 (231)
++|+++.+++++.+ . +|.+|++. +++... ....+...+..++|+| ||++|++++. +++|+||++..
T Consensus 262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred ECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 58999887765432 2 89999985 555433 2334555678899999 8999998876 48999999866
Q ss_pred C
Q psy6442 197 G 197 (231)
Q Consensus 197 ~ 197 (231)
.
T Consensus 342 ~ 342 (365)
T 1jof_A 342 E 342 (365)
T ss_dssp T
T ss_pred h
Confidence 5
No 165
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.49 E-value=9.3e-12 Score=99.16 Aligned_cols=181 Identities=13% Similarity=0.055 Sum_probs=138.9
Q ss_pred CCcCCCceeeeccCCCeEeeeeccc-ccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE
Q psy6442 1 MCVDGKPMLRQGDTGDWIGTFEGHK-GCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE 79 (231)
Q Consensus 1 ~~~d~~~~~~~~~~g~~i~~l~gH~-~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~ 79 (231)
++.|+.|++|+.++|+.+-++..|. ..+.++.+.|+|+. |+ +.++.|..||. +++.+..+.
T Consensus 11 ~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~i---------------lv--s~~~~V~~~d~-~G~~~W~~~ 72 (276)
T 3no2_A 11 GSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEI---------------LF--SYSKGAKMITR-DGRELWNIA 72 (276)
T ss_dssp CTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCE---------------EE--ECBSEEEEECT-TSCEEEEEE
T ss_pred eCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCE---------------EE--eCCCCEEEECC-CCCEEEEEc
Confidence 3678999999998999999998876 46788888887654 44 34677999998 788887777
Q ss_pred eC--CcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeeccc-------eeEEEEEEecCCCCEEEEecCCCeEE
Q psy6442 80 FG--AVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVPA-------QVHSASLLLNSERPIFVCGGEDLKMY 148 (231)
Q Consensus 80 ~~--~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~d~~i~ 148 (231)
.+ ..+.++.+.++++.+++.. ...+..++. +.+.+..+.... ..... ...+++.++++...+++|.
T Consensus 73 ~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v--~~~~~G~~lv~~~~~~~v~ 149 (276)
T 3no2_A 73 APAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQI--NKNKKGNYLVPLFATSEVR 149 (276)
T ss_dssp CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCC--EECTTSCEEEEETTTTEEE
T ss_pred CCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCc--eECCCCCEEEEecCCCEEE
Confidence 64 3577889999999887754 456666775 555555544221 11112 2367888999999999999
Q ss_pred EEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442 149 KFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK 204 (231)
Q Consensus 149 ~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~ 204 (231)
.||.. |+.+.++..+ ..+.++.+.|+|+++++++.++.|..+|..+|+....+.
T Consensus 150 ~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 150 EIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp EECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred EECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 99987 9999888754 456778899999999999999899999999999765554
No 166
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.48 E-value=1e-11 Score=101.20 Aligned_cols=194 Identities=10% Similarity=0.014 Sum_probs=136.9
Q ss_pred cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC
Q psy6442 3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA 82 (231)
Q Consensus 3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~ 82 (231)
.+++|.++|..+++.+.++.. ......+.++++++ .+++...+++|.+||..+++....+....
T Consensus 62 ~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~---------------lyv~~~~~~~v~~iD~~t~~~~~~i~~g~ 125 (328)
T 3dsm_A 62 NSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEK---------------AYVTQIWDYRIFIINPKTYEITGYIECPD 125 (328)
T ss_dssp GGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTE---------------EEEEEBSCSEEEEEETTTTEEEEEEECTT
T ss_pred CCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCe---------------EEEEECCCCeEEEEECCCCeEEEEEEcCC
Confidence 357899999999999998864 35567788876542 23444478999999999998888888776
Q ss_pred ------cceeEEEccCCCEEEEE---cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCC---------
Q psy6442 83 ------VPNSLEISRDGTTITVT---HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGED--------- 144 (231)
Q Consensus 83 ------~~~~v~~~~~~~~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d--------- 144 (231)
.+..+++ . +..++++ .++.+.++|..+.+.+..+........+. .+++++++++...+
T Consensus 126 ~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~--~~~dG~l~v~~~~~~~~~~~~~~ 201 (328)
T 3dsm_A 126 MDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLV--MDKYNKMWTITDGGYEGSPYGYE 201 (328)
T ss_dssp CCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCE--ECTTSEEEEEBCCBCTTCSSCBC
T ss_pred ccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceE--EcCCCCEEEEECCCccCCccccC
Confidence 7888888 3 4455554 36789999999888777766543333333 37888877776554
Q ss_pred -CeEEEEeCCCcceeeeccCC-CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee-eeccCCcccCCCCCCc
Q psy6442 145 -LKMYKFDYSTGAEIESFKGH-FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL-WKCIEGGLNNSLGLDS 218 (231)
Q Consensus 145 -~~i~~~d~~~~~~~~~~~~h-~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~ 218 (231)
..|+++|..+++....+.-. ...+..++|+|++++|..+.. .|.+||..+++.... +-......+..+++++
T Consensus 202 ~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp 276 (328)
T 3dsm_A 202 APSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNP 276 (328)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECT
T ss_pred CceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcC
Confidence 78999999888877665422 236889999999887766654 899999988875321 1111134455566665
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.48 E-value=4.5e-12 Score=104.65 Aligned_cols=199 Identities=18% Similarity=0.113 Sum_probs=133.5
Q ss_pred eeeeccCCCeEeeeecccccEEE-----EEECCCCceeEeccccccccCCCEEEEEeC-CCC--EEEEeCCCCCceEEEE
Q psy6442 8 MLRQGDTGDWIGTFEGHKGCVWG-----VDINKDASKAASGAADFQAKNNTRLISCAE-DKT--VRLWDVSASAEVQKLE 79 (231)
Q Consensus 8 ~~~~~~~g~~i~~l~gH~~~V~~-----~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~-D~t--i~iwd~~~~~~~~~~~ 79 (231)
...+..+|..+..|..|.+.+.. ..|+|||+. |+.++. |++ |.+||+.+++......
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~---------------l~~~~~~~g~~~l~~~d~~~g~~~~lt~ 77 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSK---------------LLFGGAFDGPWNYYLLDLNTQVATQLTE 77 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCE---------------EEEEECTTSSCEEEEEETTTCEEEECCC
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCE---------------EEEEEcCCCCceEEEEeCCCCceEEeee
Confidence 34566789999999999887776 789998655 455555 664 7888998877654443
Q ss_pred eCC-cceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccce-eEEEEEEecCCCCEEEE----------------
Q psy6442 80 FGA-VPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQ-VHSASLLLNSERPIFVC---------------- 140 (231)
Q Consensus 80 ~~~-~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------------- 140 (231)
... .+..++|+||++.++.. .+..+.+||..+.+.......+.. .....+..++++..++.
T Consensus 78 ~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~ 157 (388)
T 3pe7_A 78 GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKK 157 (388)
T ss_dssp SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHH
T ss_pred CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccch
Confidence 332 33467899999977654 466899999988776655544432 22233444788887763
Q ss_pred ------ecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcC-CCCEEEEeeCC------CcEEEEeCCCCCeeeeeeccC
Q psy6442 141 ------GGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP-DGELYASGSED------GTLRLWQTNVGKTYGLWKCIE 207 (231)
Q Consensus 141 ------g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~sp-d~~~laS~s~d------~~v~iwd~~~~~~~~~~~~~~ 207 (231)
...+..|++||+.+++. ..+..+...+..++||| ||+.|+.++.+ ..|.++|...++...+.....
T Consensus 158 ~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 236 (388)
T 3pe7_A 158 FHEFYFTKPCCRLMRVDLKTGES-TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE 236 (388)
T ss_dssp HHHHGGGCCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT
T ss_pred hhhhhccCCcceEEEEECCCCce-EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC
Confidence 22447899999988764 34445667899999999 99988877753 378888887766554433221
Q ss_pred CcccCCCCCCccccc
Q psy6442 208 GGLNNSLGLDSSGHL 222 (231)
Q Consensus 208 ~~~~~~~~~~~~~~~ 222 (231)
+.......|.++|+.
T Consensus 237 ~~~~~~~~~spdg~~ 251 (388)
T 3pe7_A 237 GESCTHEFWVPDGSA 251 (388)
T ss_dssp TEEEEEEEECTTSSC
T ss_pred CcccccceECCCCCE
Confidence 122334456666653
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.48 E-value=5.4e-12 Score=104.10 Aligned_cols=200 Identities=11% Similarity=0.103 Sum_probs=124.3
Q ss_pred Cceeee--ccCCCeEe--eee-cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCC-CCCceEEEE
Q psy6442 6 KPMLRQ--GDTGDWIG--TFE-GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVS-ASAEVQKLE 79 (231)
Q Consensus 6 ~~~~~~--~~~g~~i~--~l~-gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~-~~~~~~~~~ 79 (231)
.+.++. ..+|++.. ... ++...+..++|+|++ ++|++++.+ +|.+||+. +++......
T Consensus 15 ~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg---------------~~l~~~~~~-~v~~~~~~~~g~~~~~~~ 78 (365)
T 1jof_A 15 AIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHER---------------KNIYGAAMK-KWSSFAVKSPTEIVHEAS 78 (365)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTS---------------SEEEEEEBT-EEEEEEEEETTEEEEEEE
T ss_pred cEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCC---------------CEEEEEccc-eEEEEEECCCCCEEEeeE
Confidence 455544 35665422 111 233456678888874 457777777 99999987 666544333
Q ss_pred e--CCcceeEEEccCCCE--EEEE--------------cCCeEEEEECCC-cceEEeee-----ccceeEEEEEEecCCC
Q psy6442 80 F--GAVPNSLEISRDGTT--ITVT--------------HGSCVTFLDANS-LELIKEHK-----VPAQVHSASLLLNSER 135 (231)
Q Consensus 80 ~--~~~~~~v~~~~~~~~--~~~~--------------~~~~i~~~d~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~ 135 (231)
. ...+..++++|+++. +++. .++.+.+|+... .+...... ....... +.++|++
T Consensus 79 ~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~spdG 156 (365)
T 1jof_A 79 HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHG--MVFDPTE 156 (365)
T ss_dssp EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEE--EEECTTS
T ss_pred eecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceE--EEECCCC
Confidence 2 234677899999985 3333 467899999863 44333222 1123333 4458999
Q ss_pred CEEEEec-CCCeEEEEeCC-Cccee--eecc--CCCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCC--CCCee---eee
Q psy6442 136 PIFVCGG-EDLKMYKFDYS-TGAEI--ESFK--GHFGPIHCVKFSPDGELYASGS-EDGTLRLWQTN--VGKTY---GLW 203 (231)
Q Consensus 136 ~~~~~g~-~d~~i~~~d~~-~~~~~--~~~~--~h~~~V~~v~~spd~~~laS~s-~d~~v~iwd~~--~~~~~---~~~ 203 (231)
+.+++++ .+.+|++|++. +++.. ..+. .|...+..++|+|||++|+.++ .+++|.+|++. +|+.. +..
T Consensus 157 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~ 236 (365)
T 1jof_A 157 TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSF 236 (365)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceE
Confidence 8777654 46789999997 66542 3333 2456789999999999887776 47899999764 56542 223
Q ss_pred eccCCc------------ccCCCC-CCcccccc
Q psy6442 204 KCIEGG------------LNNSLG-LDSSGHLN 223 (231)
Q Consensus 204 ~~~~~~------------~~~~~~-~~~~~~~~ 223 (231)
...... ....++ ++++|+.+
T Consensus 237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred EcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 322211 355677 77777644
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.46 E-value=3.1e-12 Score=113.18 Aligned_cols=184 Identities=11% Similarity=0.044 Sum_probs=117.2
Q ss_pred CcCCCceeeeccCCCeEeeeecccccEE---------EEEEC--CCCce-eEeccccccccCCCEEEEEeCCCCEEEEeC
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEGHKGCVW---------GVDIN--KDASK-AASGAADFQAKNNTRLISCAEDKTVRLWDV 69 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~---------~~~~~--~~~~~-~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~ 69 (231)
+.+++..||....+.....+..|...|. .+.|+ |||+. ++ ++...+..|.++++
T Consensus 44 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la--------------~~~~~~~~l~~~~~ 109 (662)
T 3azo_A 44 AEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV--------------FTHFGDQRLYAFEP 109 (662)
T ss_dssp TTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE--------------EEBTTTCCEEEECT
T ss_pred ccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE--------------EEECCCCeEEEEcC
Confidence 3467778888544555666777766655 45454 77654 32 22222556777776
Q ss_pred C--C-CCceEEEEe------CCcceeEEEccCCCEEEEEc-C----------CeEEEEECCC------cceEEee-eccc
Q psy6442 70 S--A-SAEVQKLEF------GAVPNSLEISRDGTTITVTH-G----------SCVTFLDANS------LELIKEH-KVPA 122 (231)
Q Consensus 70 ~--~-~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~-~----------~~i~~~d~~~------~~~~~~~-~~~~ 122 (231)
. . +.. ..+.. ...+..++|+||++.++... + ..|.+|+... ....... ....
T Consensus 110 ~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 188 (662)
T 3azo_A 110 DAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHR 188 (662)
T ss_dssp TSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSS
T ss_pred CCCCCCCC-EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCC
Confidence 5 2 332 23322 23567899999999876543 3 4788899877 4443332 2222
Q ss_pred eeEEEEEEecCCCCEEEEecCC--------CeEEEEeCC-Cc---ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCC--c
Q psy6442 123 QVHSASLLLNSERPIFVCGGED--------LKMYKFDYS-TG---AEIESFKGHFGPIHCVKFSPDGELYASGSEDG--T 188 (231)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~g~~d--------~~i~~~d~~-~~---~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~--~ 188 (231)
.+. ...++|+++.++..+.+ ..|++||+. ++ +......+|...+..++|+|||++++++..++ .
T Consensus 189 ~~~--~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~ 266 (662)
T 3azo_A 189 FVT--GPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWN 266 (662)
T ss_dssp EEC--CCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCE
T ss_pred ccc--CceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeE
Confidence 222 23458999988877644 479999998 56 33333455678899999999999888888888 5
Q ss_pred EEEEeCCCCCeeee
Q psy6442 189 LRLWQTNVGKTYGL 202 (231)
Q Consensus 189 v~iwd~~~~~~~~~ 202 (231)
|.+||+.+++...+
T Consensus 267 l~~~~~~~~~~~~l 280 (662)
T 3azo_A 267 LHRVDPATGAATQL 280 (662)
T ss_dssp EEEECTTTCCEEES
T ss_pred EEEEECCCCceeec
Confidence 66666667765443
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.45 E-value=4.6e-11 Score=94.79 Aligned_cols=197 Identities=13% Similarity=0.228 Sum_probs=127.8
Q ss_pred CCCceeeeccCCCeEeeee------cccccEEEEEE-CCCCceeEeccccccccCCCEEEEEe-CCCCEEEEeCCCCCce
Q psy6442 4 DGKPMLRQGDTGDWIGTFE------GHKGCVWGVDI-NKDASKAASGAADFQAKNNTRLISCA-EDKTVRLWDVSASAEV 75 (231)
Q Consensus 4 d~~~~~~~~~~g~~i~~l~------gH~~~V~~~~~-~~~~~~~~s~~~d~~~~~~~~l~s~s-~D~ti~iwd~~~~~~~ 75 (231)
++.|++|+.. |+.+..+. +|...+..+++ .+++ ..+++.. .++.|++|| .+++.+
T Consensus 50 ~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g---------------~l~v~~~~~~~~i~~~d-~~g~~~ 112 (286)
T 1q7f_A 50 NHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSG---------------DIIVTERSPTHQIQIYN-QYGQFV 112 (286)
T ss_dssp GTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTT---------------EEEEEECGGGCEEEEEC-TTSCEE
T ss_pred CCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCC---------------eEEEEcCCCCCEEEEEC-CCCcEE
Confidence 5567777755 66665553 23445667776 3432 2334442 278999999 556665
Q ss_pred EEEEeC--CcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeecc---ceeEEEEEEecCCCCEEEEecCCCeEEE
Q psy6442 76 QKLEFG--AVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVP---AQVHSASLLLNSERPIFVCGGEDLKMYK 149 (231)
Q Consensus 76 ~~~~~~--~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~d~~i~~ 149 (231)
..+... ..+..++++|+++.+++.. ++.+.+|+... +.+..+... .... .+..++++.++++...+..|++
T Consensus 113 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~p~--~i~~~~~g~l~v~~~~~~~i~~ 189 (286)
T 1q7f_A 113 RKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPN--GVVVNDKQEIFISDNRAHCVKV 189 (286)
T ss_dssp EEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEE--EEEECSSSEEEEEEGGGTEEEE
T ss_pred EEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEEeCCCCccCCcE--EEEECCCCCEEEEECCCCEEEE
Confidence 555432 4678999999998655543 57899999643 344443321 1233 3444788888888788899999
Q ss_pred EeCCCcceeeeccC--CCCCeeEEEEcCCCCEEEEeeCCC-cEEEEeCCCCCeeeeeeccC-CcccCCCCCCccccc
Q psy6442 150 FDYSTGAEIESFKG--HFGPIHCVKFSPDGELYASGSEDG-TLRLWQTNVGKTYGLWKCIE-GGLNNSLGLDSSGHL 222 (231)
Q Consensus 150 ~d~~~~~~~~~~~~--h~~~V~~v~~spd~~~laS~s~d~-~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 222 (231)
||. .+..+..+.. +...+..++++|+|+++++...++ .|++|+. .++....+.... ...+..++++++|++
T Consensus 190 ~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l 264 (286)
T 1q7f_A 190 FNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV 264 (286)
T ss_dssp EET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred EcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcE
Confidence 997 4555666543 346789999999999999998886 9999995 566665554322 223445666666653
No 171
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.45 E-value=8e-13 Score=118.12 Aligned_cols=129 Identities=12% Similarity=0.177 Sum_probs=91.6
Q ss_pred EEEEeCCCCEEEEeCCCCCceEEEEeCC----cceeEEEccCCCEEEEEc----------CCeEEEEECCCcceEEeeec
Q psy6442 55 LISCAEDKTVRLWDVSASAEVQKLEFGA----VPNSLEISRDGTTITVTH----------GSCVTFLDANSLELIKEHKV 120 (231)
Q Consensus 55 l~s~s~D~ti~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~----------~~~i~~~d~~~~~~~~~~~~ 120 (231)
++..+.|++|++||+.+++....+.... .+.+++|+||++.++... ++.+.+||..+.+.+.....
T Consensus 29 ~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l 108 (719)
T 1z68_A 29 YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL 108 (719)
T ss_dssp EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC
T ss_pred EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec
Confidence 3444569999999999998766665432 278999999999876543 37899999987765221112
Q ss_pred cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeec-cCCCCCe-----------------eEEEEcCCCCEEEE
Q psy6442 121 PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESF-KGHFGPI-----------------HCVKFSPDGELYAS 182 (231)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~-~~h~~~V-----------------~~v~~spd~~~laS 182 (231)
...+... .++|+++.++++. +..|++|+..+++..... .++...| .+++|||||++|++
T Consensus 109 ~~~~~~~--~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~ 185 (719)
T 1z68_A 109 PRPIQYL--CWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAY 185 (719)
T ss_dssp CSSBCCE--EECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEE
T ss_pred Ccccccc--eECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEE
Confidence 2233333 3489999988875 779999999887654432 3333322 48999999999999
Q ss_pred eeCC
Q psy6442 183 GSED 186 (231)
Q Consensus 183 ~s~d 186 (231)
++.|
T Consensus 186 ~~~d 189 (719)
T 1z68_A 186 AEFN 189 (719)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 8865
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.44 E-value=1.4e-10 Score=101.32 Aligned_cols=185 Identities=17% Similarity=0.184 Sum_probs=137.1
Q ss_pred cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCC--CCCceEEEEe
Q psy6442 3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVS--ASAEVQKLEF 80 (231)
Q Consensus 3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~--~~~~~~~~~~ 80 (231)
.+++|.++|..+++.+.++... ..++.+.|+|+|+ ++++++.|+.|.+||+. +.+.+..+..
T Consensus 175 ~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr---------------~lyv~~~dg~V~viD~~~~t~~~v~~i~~ 238 (567)
T 1qks_A 175 DAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR---------------YLFVIGRDGKVNMIDLWMKEPTTVAEIKI 238 (567)
T ss_dssp TTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSC---------------EEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred CCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCC---------------EEEEEcCCCeEEEEECCCCCCcEeEEEec
Confidence 5789999999999999988743 3567899999855 46777889999999996 7778888888
Q ss_pred CCcceeEEEc----cCCCEEEEEc--CCeEEEEECCCcceEEeeeccc----------eeEEEEEEecCCCC-EEEEecC
Q psy6442 81 GAVPNSLEIS----RDGTTITVTH--GSCVTFLDANSLELIKEHKVPA----------QVHSASLLLNSERP-IFVCGGE 143 (231)
Q Consensus 81 ~~~~~~v~~~----~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~~~~g~~ 143 (231)
+..+..++++ ||++.++++. .+.+.++|..+.+.++.+.... ......+..++++. +++.-.+
T Consensus 239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 8888999999 6999888764 5789999999888877655321 11112233344444 4445566
Q ss_pred CCeEEEEeCCCccee--eeccCCCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCCeeeeee
Q psy6442 144 DLKMYKFDYSTGAEI--ESFKGHFGPIHCVKFSPDGELYASGS-EDGTLRLWQTNVGKTYGLWK 204 (231)
Q Consensus 144 d~~i~~~d~~~~~~~--~~~~~h~~~V~~v~~spd~~~laS~s-~d~~v~iwd~~~~~~~~~~~ 204 (231)
.++|+++|......+ ..+. .....+++.|+|++++|..++ .++.|.++|+.+++......
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~ 381 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED 381 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred CCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe
Confidence 799999998764322 2222 334577899999999775554 68889999999998877664
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.44 E-value=4.6e-11 Score=94.79 Aligned_cols=174 Identities=13% Similarity=0.214 Sum_probs=119.4
Q ss_pred CCCceeeeccCCCeEeeeec-ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe--
Q psy6442 4 DGKPMLRQGDTGDWIGTFEG-HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-- 80 (231)
Q Consensus 4 d~~~~~~~~~~g~~i~~l~g-H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-- 80 (231)
++.|++|+ .+|+.+..+.. +...+..+.++++++ .+++...++.|.+||.. ++.+..+..
T Consensus 99 ~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~---------------l~v~~~~~~~i~~~~~~-g~~~~~~~~~~ 161 (286)
T 1q7f_A 99 THQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGR---------------IIVVECKVMRVIIFDQN-GNVLHKFGCSK 161 (286)
T ss_dssp GCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSC---------------EEEEETTTTEEEEECTT-SCEEEEEECTT
T ss_pred CCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCC---------------EEEEECCCCEEEEEcCC-CCEEEEeCCCC
Confidence 56777777 56777776642 345677888877643 45666678899999964 455555542
Q ss_pred -CCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeecc---ceeEEEEEEecCCCCEEEEecCCC-eEEEEeCCC
Q psy6442 81 -GAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVP---AQVHSASLLLNSERPIFVCGGEDL-KMYKFDYST 154 (231)
Q Consensus 81 -~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~d~-~i~~~d~~~ 154 (231)
...+..++++|++..+++.. ++.|.+|+... ..+..+... .... .+..++++.++++...+. .|++|+. +
T Consensus 162 ~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~--~i~~d~~G~l~v~~~~~~~~i~~~~~-~ 237 (286)
T 1q7f_A 162 HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPI--GVGINSNGEILIADNHNNFNLTIFTQ-D 237 (286)
T ss_dssp TCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEE--EEEECTTCCEEEEECSSSCEEEEECT-T
T ss_pred ccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCc--EEEECCCCCEEEEeCCCCEEEEEECC-C
Confidence 23578999999988554433 57899999743 344443322 1233 344478888888887775 9999995 5
Q ss_pred cceeeeccCCC--CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442 155 GAEIESFKGHF--GPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT 199 (231)
Q Consensus 155 ~~~~~~~~~h~--~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~ 199 (231)
++.+..+..+. ..+.+++++|+|+++++ +.|++|++|++....+
T Consensus 238 g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 238 GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 66666665443 34789999999998887 5799999999866543
No 174
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.43 E-value=1.5e-10 Score=92.42 Aligned_cols=189 Identities=13% Similarity=0.098 Sum_probs=125.6
Q ss_pred cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe--
Q psy6442 3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-- 80 (231)
Q Consensus 3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-- 80 (231)
.++.|+.|+..++ +..+..+.+.+.++.++++++ .+++...++.|.+||..+++.......
T Consensus 48 ~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~---------------l~v~~~~~~~i~~~d~~~g~~~~~~~~~~ 110 (296)
T 3e5z_A 48 RQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH---------------LIACSHGLRRLERQREPGGEWESIADSFE 110 (296)
T ss_dssp GGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC---------------EEEEETTTTEEEEECSTTCCEEEEECEET
T ss_pred CCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc---------------EEEEecCCCeEEEEcCCCCcEEEEeeccC
Confidence 3567888887766 667777788889999988754 355555678999999987775433321
Q ss_pred ---CCcceeEEEccCCCEEEEEc------------------CCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEE
Q psy6442 81 ---GAVPNSLEISRDGTTITVTH------------------GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFV 139 (231)
Q Consensus 81 ---~~~~~~v~~~~~~~~~~~~~------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (231)
...++.++++|+++..+... .+.+..++.. ............... +.+++++..++
T Consensus 111 ~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g--i~~s~dg~~lv 187 (296)
T 3e5z_A 111 GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG--LAFLPSGNLLV 187 (296)
T ss_dssp TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE--EEECTTSCEEE
T ss_pred CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc--EEECCCCCEEE
Confidence 12467899999998766421 2355566654 222221111122233 34488898887
Q ss_pred EecCCCeEEEEeCC-Ccce---eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCC
Q psy6442 140 CGGEDLKMYKFDYS-TGAE---IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLG 215 (231)
Q Consensus 140 ~g~~d~~i~~~d~~-~~~~---~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 215 (231)
+...+..|++|++. ++.. ...+..+...+..++++++|+++++. ++.|.+|+.. ++....+..-.. ...+.
T Consensus 188 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~--~~~~~ 262 (296)
T 3e5z_A 188 SDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT--TSNLC 262 (296)
T ss_dssp EETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC--CCEEE
T ss_pred EeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC--ceeEE
Confidence 77778999999986 4443 23333455667899999999988777 7889999986 777666654332 44455
Q ss_pred C
Q psy6442 216 L 216 (231)
Q Consensus 216 ~ 216 (231)
+
T Consensus 263 f 263 (296)
T 3e5z_A 263 F 263 (296)
T ss_dssp E
T ss_pred E
Confidence 5
No 175
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.42 E-value=1.7e-11 Score=101.24 Aligned_cols=179 Identities=13% Similarity=0.048 Sum_probs=119.8
Q ss_pred CceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCc-c
Q psy6442 6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAV-P 84 (231)
Q Consensus 6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~-~ 84 (231)
++++|+..+|+......+|...+....|+|+++ .|+.++.++.|++||+.+++.......... .
T Consensus 61 ~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~---------------~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~ 125 (388)
T 3pe7_A 61 NYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD---------------ALFYVKDGRNLMRVDLATLEENVVYQVPAEWV 125 (388)
T ss_dssp EEEEEETTTCEEEECCCSSCBCSSSCEECTTSS---------------EEEEEETTTEEEEEETTTCCEEEEEECCTTEE
T ss_pred eEEEEeCCCCceEEeeeCCCCCccceEEcCCCC---------------EEEEEeCCCeEEEEECCCCcceeeeechhhcc
Confidence 377778888887777777766666677888754 577778889999999999887665554432 2
Q ss_pred e--eEEEccCCCEEEEE-----------------------cCCeEEEEECCCcceEEeeeccceeEEEEEEecC-CCCEE
Q psy6442 85 N--SLEISRDGTTITVT-----------------------HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNS-ERPIF 138 (231)
Q Consensus 85 ~--~v~~~~~~~~~~~~-----------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 138 (231)
. ...++|++..++.. ....+.++|..+.+.......+..+.... ++| ++..+
T Consensus 126 ~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~--~sp~dg~~l 203 (388)
T 3pe7_A 126 GYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPI--YRPYDDSTV 203 (388)
T ss_dssp EEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEE--EETTEEEEE
T ss_pred cccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccE--ECCCCCCEE
Confidence 2 23348888877532 12578889988776544444333343333 478 88877
Q ss_pred EEecC------CCeEEEEeCCCcceeeeccCCC--CCeeEEEEcCCCCEEEEeeC--CC---cEEEEeCCCCCeeee
Q psy6442 139 VCGGE------DLKMYKFDYSTGAEIESFKGHF--GPIHCVKFSPDGELYASGSE--DG---TLRLWQTNVGKTYGL 202 (231)
Q Consensus 139 ~~g~~------d~~i~~~d~~~~~~~~~~~~h~--~~V~~v~~spd~~~laS~s~--d~---~v~iwd~~~~~~~~~ 202 (231)
+.... ...|+++|...+. ...+..+. ..+...+|||||+.|+..+. ++ .|.+||+.+++...+
T Consensus 204 ~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l 279 (388)
T 3pe7_A 204 AFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQL 279 (388)
T ss_dssp EEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEE
T ss_pred EEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEE
Confidence 76554 3478888876554 33444344 35788999999997765543 22 399999999986443
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.41 E-value=2.7e-10 Score=92.23 Aligned_cols=199 Identities=13% Similarity=0.150 Sum_probs=126.9
Q ss_pred cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCC----CCEEEEeCCCCCceEEE
Q psy6442 3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAED----KTVRLWDVSASAEVQKL 78 (231)
Q Consensus 3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D----~ti~iwd~~~~~~~~~~ 78 (231)
.++.|++|+..+++....+..+...+.++.+++++++ +++...+ +.|.+||..++.....+
T Consensus 64 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l---------------~v~~~~~~~~~~~i~~~d~~~~~~~~~~ 128 (333)
T 2dg1_A 64 FEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRL---------------FVCYLGDFKSTGGIFAATENGDNLQDII 128 (333)
T ss_dssp TTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCE---------------EEEECTTSSSCCEEEEECTTSCSCEEEE
T ss_pred CCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcE---------------EEEeCCCCCCCceEEEEeCCCCEEEEEE
Confidence 4567888888877766554456678899999887543 4554444 68999998877654333
Q ss_pred E---eCCcceeEEEccCCCEEEEEcC-------CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEE-EEecCCCeE
Q psy6442 79 E---FGAVPNSLEISRDGTTITVTHG-------SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIF-VCGGEDLKM 147 (231)
Q Consensus 79 ~---~~~~~~~v~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i 147 (231)
. ....+..++++|++...+.... +.+..++....+............. +.+++++..+ ++...++.|
T Consensus 129 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--i~~~~dg~~l~v~~~~~~~i 206 (333)
T 2dg1_A 129 EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANG--IALSTDEKVLWVTETTANRL 206 (333)
T ss_dssp CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEE--EEECTTSSEEEEEEGGGTEE
T ss_pred ccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccc--eEECCCCCEEEEEeCCCCeE
Confidence 2 1245789999999987665542 4566666554333222111112223 3447888744 555667899
Q ss_pred EEEeCCC-cceee--------eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCc-----ccCC
Q psy6442 148 YKFDYST-GAEIE--------SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGG-----LNNS 213 (231)
Q Consensus 148 ~~~d~~~-~~~~~--------~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~-----~~~~ 213 (231)
++||..+ +..+. .+.++ ..+..++++++|+++++...++.|.+||. .++....+..-... ....
T Consensus 207 ~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~ 284 (333)
T 2dg1_A 207 HRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTH 284 (333)
T ss_dssp EEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCE
T ss_pred EEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcce
Confidence 9999853 33221 12233 46788999999999998888899999998 56666555432110 3455
Q ss_pred CCCCccc
Q psy6442 214 LGLDSSG 220 (231)
Q Consensus 214 ~~~~~~~ 220 (231)
++++++|
T Consensus 285 ~~~~~dg 291 (333)
T 2dg1_A 285 PQFIPGT 291 (333)
T ss_dssp EEECTTS
T ss_pred EEECCCC
Confidence 5565554
No 177
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.41 E-value=4.6e-12 Score=113.91 Aligned_cols=141 Identities=16% Similarity=0.170 Sum_probs=97.8
Q ss_pred ccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC------cceeEEEccCCCEEEEE
Q psy6442 26 GCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA------VPNSLEISRDGTTITVT 99 (231)
Q Consensus 26 ~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~ 99 (231)
...+++.|+|+++ .++++ |++|++||+.++++...+.... ...+++++||++.++..
T Consensus 17 ~~~~~~~w~~dg~---------------~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~ 79 (740)
T 4a5s_A 17 LKLYSLRWISDHE---------------YLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLE 79 (740)
T ss_dssp CCCCCEEECSSSE---------------EEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEE
T ss_pred ccccccEECCCCc---------------EEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEE
Confidence 3456789999854 35664 8999999999998766554322 12348899999987765
Q ss_pred cC----------CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeee-ccCCCCCe
Q psy6442 100 HG----------SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES-FKGHFGPI 168 (231)
Q Consensus 100 ~~----------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~-~~~h~~~V 168 (231)
.+ +.+.+||..+.+.......+...... .++|+++.++.+ .+..|++|+..++...+. ..++...+
T Consensus 80 ~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~--~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~ 156 (740)
T 4a5s_A 80 YNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWV--TWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII 156 (740)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEE--EECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred ECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceee--EECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccce
Confidence 43 46679999887654433323334433 449999999887 468999999987765432 23443333
Q ss_pred -----------------eEEEEcCCCCEEEEeeCC
Q psy6442 169 -----------------HCVKFSPDGELYASGSED 186 (231)
Q Consensus 169 -----------------~~v~~spd~~~laS~s~d 186 (231)
..++|||||++||.++.|
T Consensus 157 ~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d 191 (740)
T 4a5s_A 157 YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN 191 (740)
T ss_dssp EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred ecCcccccccchhcCCCcceEECCCCCEEEEEEEc
Confidence 358999999999988643
No 178
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.40 E-value=5.7e-11 Score=94.60 Aligned_cols=150 Identities=9% Similarity=0.080 Sum_probs=117.1
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCceEEEEeCC--cceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEE
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGA--VPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASL 129 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 129 (231)
++.|++++.|+.|.+||..+++.+.++.... .+.++.+.|+++.++ +.++.+..+|. +.+.+..++.+........
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~ 82 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTA 82 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCcccccc
Confidence 5678999999999999999999988887653 688999999998777 66778999998 7778877776522222233
Q ss_pred EecCCCCEEEEecC-CCeEEEEeCCCcceeeecc------CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442 130 LLNSERPIFVCGGE-DLKMYKFDYSTGAEIESFK------GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL 202 (231)
Q Consensus 130 ~~~~~~~~~~~g~~-d~~i~~~d~~~~~~~~~~~------~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~ 202 (231)
...+++..+++.+. +++++.+|. +++.+.++. ++......+++.++|+++++...++.|..||.. |+....
T Consensus 83 ~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~ 160 (276)
T 3no2_A 83 RILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNS 160 (276)
T ss_dssp EECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred EECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEE
Confidence 44788999888776 788888885 677666543 233456678899999999999999999999998 987665
Q ss_pred eec
Q psy6442 203 WKC 205 (231)
Q Consensus 203 ~~~ 205 (231)
++.
T Consensus 161 ~~~ 163 (276)
T 3no2_A 161 VKL 163 (276)
T ss_dssp EEC
T ss_pred EEC
Confidence 553
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.40 E-value=1.5e-11 Score=108.77 Aligned_cols=165 Identities=10% Similarity=0.001 Sum_probs=110.9
Q ss_pred CeEeeeec-----ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCC----------CCEEEEeCCC------CCc
Q psy6442 16 DWIGTFEG-----HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAED----------KTVRLWDVSA------SAE 74 (231)
Q Consensus 16 ~~i~~l~g-----H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D----------~ti~iwd~~~------~~~ 74 (231)
.....+.. |...+..+.|+|||+.+ +.++.| .+|++||+.+ ++.
T Consensus 115 ~~~~~l~~~~~~~~~~~~~~~~~spDg~~l---------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 179 (662)
T 3azo_A 115 AVPRPLTPVSAVGGGLRWADPVLLPERGEV---------------WCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179 (662)
T ss_dssp CCCEECSCCCCSTTCEEEEEEEEETTTTEE---------------EEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS
T ss_pred CCCEeccCCccCCCCccccCcEECCCCCEE---------------EEEEecccCCCCCCceeEEEEEECCCCccccCCce
Confidence 44555665 67788899999987654 444444 5799999987 544
Q ss_pred eEEE-EeCCcceeEEEccCCCEEEE-EcC--------CeEEEEECC-Cc---ceEEeeec-cceeEEEEEEecCCCCEEE
Q psy6442 75 VQKL-EFGAVPNSLEISRDGTTITV-THG--------SCVTFLDAN-SL---ELIKEHKV-PAQVHSASLLLNSERPIFV 139 (231)
Q Consensus 75 ~~~~-~~~~~~~~v~~~~~~~~~~~-~~~--------~~i~~~d~~-~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 139 (231)
.... .....+..++|+|||+.++. +.+ ..|.+||.. +. ........ ...+.. ..++|++++++
T Consensus 180 ~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~--~~~spdg~l~~ 257 (662)
T 3azo_A 180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQ--AEWAPDGSLIV 257 (662)
T ss_dssp EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEE--EEECTTSCEEE
T ss_pred eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcc--eEECCCCeEEE
Confidence 3222 22345678899999998764 322 378899987 44 22222222 223333 34488888777
Q ss_pred EecCCC--eEEEEeCCCcceeeeccCCCCC--------eeEEEEcCCCCEEEEeeCCCcEEEE--eCCCCC
Q psy6442 140 CGGEDL--KMYKFDYSTGAEIESFKGHFGP--------IHCVKFSPDGELYASGSEDGTLRLW--QTNVGK 198 (231)
Q Consensus 140 ~g~~d~--~i~~~d~~~~~~~~~~~~h~~~--------V~~v~~spd~~~laS~s~d~~v~iw--d~~~~~ 198 (231)
+++.++ +|+.||..+++......++... +.+++|+|+++++++++. +.++|| |...++
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 258 ATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp EECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred EECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence 777777 7888888676654444434332 568999999999999999 999999 665555
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.38 E-value=1.9e-10 Score=93.10 Aligned_cols=200 Identities=11% Similarity=0.080 Sum_probs=130.4
Q ss_pred CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE-Ee
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL-EF 80 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~-~~ 80 (231)
+.+++++.| .++....+.+|...+.++.|+++++ .++++..++.|.+||..+++..... ..
T Consensus 24 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~---------------l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 85 (333)
T 2dg1_A 24 ISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQ---------------LFLLDVFEGNIFKINPETKEIKRPFVSH 85 (333)
T ss_dssp CCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSC---------------EEEEETTTCEEEEECTTTCCEEEEEECS
T ss_pred eecccCccc---ccceeEEEeccCccccCcEECCCCC---------------EEEEECCCCEEEEEeCCCCcEEEEeeCC
Confidence 346777888 3667777877877888999988754 3567778899999999887765443 23
Q ss_pred CCcceeEEEccCCCEEEEEcC-----CeEEEEECCCcceEEeee---ccceeEEEEEEecCCCCEEEEecC------CCe
Q psy6442 81 GAVPNSLEISRDGTTITVTHG-----SCVTFLDANSLELIKEHK---VPAQVHSASLLLNSERPIFVCGGE------DLK 146 (231)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~-----~~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~------d~~ 146 (231)
...+..++++|+++.+++... +.+..||........... ....+.. +..++++.++++... .+.
T Consensus 86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~--i~~d~~g~l~v~~~~~~~~~~~~~ 163 (333)
T 2dg1_A 86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDD--MVFDSKGGFYFTDFRGYSTNPLGG 163 (333)
T ss_dssp SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEE--EEECTTSCEEEEECCCBTTBCCEE
T ss_pred CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccc--eEECCCCCEEEEeccccccCCCce
Confidence 467899999999987766544 488899987655432221 1112333 344788887776553 367
Q ss_pred EEEEeCCCcceeeeccCCCCCeeEEEEcCCCCE-EEEeeCCCcEEEEeCCC-CCeeeee-----eccC-CcccCCCCCCc
Q psy6442 147 MYKFDYSTGAEIESFKGHFGPIHCVKFSPDGEL-YASGSEDGTLRLWQTNV-GKTYGLW-----KCIE-GGLNNSLGLDS 218 (231)
Q Consensus 147 i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~-laS~s~d~~v~iwd~~~-~~~~~~~-----~~~~-~~~~~~~~~~~ 218 (231)
|+.+|...++.. .+..+...+..++|+|+++. +++.+.++.|.+|+..+ ++....+ .... ...+..+.++.
T Consensus 164 l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~ 242 (333)
T 2dg1_A 164 VYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS 242 (333)
T ss_dssp EEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT
T ss_pred EEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECC
Confidence 888887654432 22233446789999999984 46666788999999864 4432211 1111 12444566666
Q ss_pred cccc
Q psy6442 219 SGHL 222 (231)
Q Consensus 219 ~~~~ 222 (231)
+|+.
T Consensus 243 ~G~l 246 (333)
T 2dg1_A 243 DDNL 246 (333)
T ss_dssp TCCE
T ss_pred CCCE
Confidence 6654
No 181
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.36 E-value=2.6e-10 Score=91.00 Aligned_cols=190 Identities=14% Similarity=0.147 Sum_probs=128.4
Q ss_pred CCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCC
Q psy6442 15 GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDG 93 (231)
Q Consensus 15 g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~ 93 (231)
+..+..+..+.....++.|+|+++. .+++...++.|..||...+ ...+.. ...+..++++|++
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~--------------l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg 80 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSA--------------VIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG 80 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTE--------------EEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC
T ss_pred CCcEEEEecCCccccCCeEeCCCCE--------------EEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC
Confidence 4455566666677788899887542 3677778899999999877 444443 4568899999999
Q ss_pred CEEEEEc-CCeEEEEECCCcceEEeeec-c-cee-EEEEEEecCCCCEEEE----ec-------------CCCeEEEEeC
Q psy6442 94 TTITVTH-GSCVTFLDANSLELIKEHKV-P-AQV-HSASLLLNSERPIFVC----GG-------------EDLKMYKFDY 152 (231)
Q Consensus 94 ~~~~~~~-~~~i~~~d~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~~~~----g~-------------~d~~i~~~d~ 152 (231)
..+++.. ++.+.+||..+.+....... . ... ....+..++++.++++ |. ..+.|+.++.
T Consensus 81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence 9776665 47899999866554332211 1 110 0112334788888876 33 1357888876
Q ss_pred CCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC-CCCe---eeeeeccCCcccCCCCCCcccccc
Q psy6442 153 STGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN-VGKT---YGLWKCIEGGLNNSLGLDSSGHLN 223 (231)
Q Consensus 153 ~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 223 (231)
. ++ +..+..+...++.++|+|++++|++.+.++.|.+|++. +++. ...+ ......+..+.++.+|++|
T Consensus 161 ~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~ 232 (296)
T 3e5z_A 161 D-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIW 232 (296)
T ss_dssp T-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEE
T ss_pred C-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEE
Confidence 5 44 34445566778999999999988888889999999986 5554 3344 3345566677888887654
No 182
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.34 E-value=1.5e-10 Score=94.07 Aligned_cols=174 Identities=16% Similarity=0.224 Sum_probs=116.7
Q ss_pred CCCceeeeccCCC--eEeee---------ecccccEEEEEECCCCceeEeccccccccCCCEEEEEe-CCCCEEEEeCCC
Q psy6442 4 DGKPMLRQGDTGD--WIGTF---------EGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCA-EDKTVRLWDVSA 71 (231)
Q Consensus 4 d~~~~~~~~~~g~--~i~~l---------~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s-~D~ti~iwd~~~ 71 (231)
++.|++|+.+ |+ .+.++ .++-.....++++|+ ++..+++.+ .++.|++|| .+
T Consensus 111 ~~~v~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~--------------~g~lyv~d~~~~~~I~~~~-~~ 174 (329)
T 3fvz_A 111 LHQVFKLDPH-SKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS--------------TGAVFVSDGYCNSRIVQFS-PS 174 (329)
T ss_dssp TTEEEEECTT-CSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT--------------TCCEEEEECSSCCEEEEEC-TT
T ss_pred CCEEEEEeCC-CCeEEEEEecccCCCCCCccccCCCcEEEEeCC--------------CCeEEEEeCCCCCeEEEEc-CC
Confidence 4566666644 33 44444 234445677777762 133456665 589999999 55
Q ss_pred CCceEEEEe-C----------CcceeEEEccCCCEEEEE--cCCeEEEEECCCcceEEeeecc---ceeEEEEEEecCCC
Q psy6442 72 SAEVQKLEF-G----------AVPNSLEISRDGTTITVT--HGSCVTFLDANSLELIKEHKVP---AQVHSASLLLNSER 135 (231)
Q Consensus 72 ~~~~~~~~~-~----------~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 135 (231)
++.+..+.. . ..+..++++|++..++++ .++.|.+|+..+.+.+..+..+ ..... +...| +
T Consensus 175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~--~~~~p-g 251 (329)
T 3fvz_A 175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA--ISYIP-G 251 (329)
T ss_dssp SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEE--EEEET-T
T ss_pred CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcce--eeecC-C
Confidence 666555532 1 237899999995555554 3568999999877776665432 12222 23355 3
Q ss_pred CEEEE-------ecCCCeEEEEeCCCcceeeec---cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442 136 PIFVC-------GGEDLKMYKFDYSTGAEIESF---KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV 196 (231)
Q Consensus 136 ~~~~~-------g~~d~~i~~~d~~~~~~~~~~---~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~ 196 (231)
..+.. ...+.+|++|+..+++.+..+ .++...+..|+++|+|.++++...++.|++|++..
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 33333 334458999999999988877 46777899999999999999999999999999753
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.28 E-value=4.1e-10 Score=91.52 Aligned_cols=181 Identities=13% Similarity=0.083 Sum_probs=111.8
Q ss_pred CceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-------------CCCEEEEEeCCCCEEEEeCCCC
Q psy6442 6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-------------NNTRLISCAEDKTVRLWDVSAS 72 (231)
Q Consensus 6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-------------~~~~l~s~s~D~ti~iwd~~~~ 72 (231)
++++++..+|+....... .. +..+.|+|+++.++..+.+.... ++..+ .......|.+||+.++
T Consensus 86 ~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~d~~~~ 162 (347)
T 2gop_A 86 EIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGF-FDGEKTTFWIFDTESE 162 (347)
T ss_dssp EEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------CCCC----------CEEEEEEEETTTT
T ss_pred eEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccc-ccCccceEEEEECCCC
Confidence 477778777776554443 34 89999999988776654321000 00000 0012357899999888
Q ss_pred CceEEEEeCCcceeEEEccCCCEEEEEc-C---------CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEec
Q psy6442 73 AEVQKLEFGAVPNSLEISRDGTTITVTH-G---------SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGG 142 (231)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~---------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 142 (231)
+.+..+... .+..++|+|++ .++++. + ..+..+| +.+...... .... ..+ +|+++.++..+
T Consensus 163 ~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~-~~~~--~~~--spdg~~l~~~~ 233 (347)
T 2gop_A 163 EVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFE-KVSF--YAV--DSDGERILLYG 233 (347)
T ss_dssp EEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEE-EESE--EEE--EECSSCEEEEE
T ss_pred eEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEecc-Ccce--eeE--CCCCCEEEEEE
Confidence 763444434 77899999999 665542 1 2344555 333222221 1111 222 67887776655
Q ss_pred CC--------CeEEEEeCCCcceeeeccCCCCCeeE-EEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442 143 ED--------LKMYKFDYSTGAEIESFKGHFGPIHC-VKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW 203 (231)
Q Consensus 143 ~d--------~~i~~~d~~~~~~~~~~~~h~~~V~~-v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~ 203 (231)
.+ ..|++|| +++......+|...+.. +.|+ |+ ++++++.++.++|| +.+++...+.
T Consensus 234 ~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~ 298 (347)
T 2gop_A 234 KPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA 298 (347)
T ss_dssp CCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE
T ss_pred ccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe
Confidence 33 4788998 55555555667778886 9999 88 99999999999999 8766654443
No 184
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.28 E-value=8.5e-11 Score=96.92 Aligned_cols=149 Identities=9% Similarity=-0.054 Sum_probs=91.6
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCceEEEEeCCc-cee-------------------EEEccCCCEEEE------EcCCeEE
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAV-PNS-------------------LEISRDGTTITV------THGSCVT 105 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~-~~~-------------------v~~~~~~~~~~~------~~~~~i~ 105 (231)
++.|+.++.+++|.+||+.+++.......... ... +.++|++..++. .....+.
T Consensus 92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~ 171 (396)
T 3c5m_A 92 ERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLI 171 (396)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEE
T ss_pred CCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEE
Confidence 45577778888999999988876554443221 111 235666664432 2335788
Q ss_pred EEECCCcceEEeeeccceeEEEEEEecC-CCCEEEEecCC------CeEEEEeCCCcceeeeccCC-CCCeeEEEEcCCC
Q psy6442 106 FLDANSLELIKEHKVPAQVHSASLLLNS-ERPIFVCGGED------LKMYKFDYSTGAEIESFKGH-FGPIHCVKFSPDG 177 (231)
Q Consensus 106 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~d------~~i~~~d~~~~~~~~~~~~h-~~~V~~v~~spd~ 177 (231)
+||..+.+..........+....+ +| ++..++..+.+ ..|+++|...+......... ...+..++|+|||
T Consensus 172 ~~d~~~g~~~~~~~~~~~~~~~~~--sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg 249 (396)
T 3c5m_A 172 KVDIETGELEVIHQDTAWLGHPIY--RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDG 249 (396)
T ss_dssp EEETTTCCEEEEEEESSCEEEEEE--ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTS
T ss_pred EEECCCCcEEeeccCCcccccceE--CCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCC
Confidence 899877665444433333433333 66 56655544322 46899998665433322211 2357889999999
Q ss_pred CEEEEeeCC-----CcEEEEeCCCCCeeee
Q psy6442 178 ELYASGSED-----GTLRLWQTNVGKTYGL 202 (231)
Q Consensus 178 ~~laS~s~d-----~~v~iwd~~~~~~~~~ 202 (231)
++|+.++.+ +.|.+||+.+++...+
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l 279 (396)
T 3c5m_A 250 SAMAYVSYFKGQTDRVIYKANPETLENEEV 279 (396)
T ss_dssp SCEEEEEEETTTCCEEEEEECTTTCCEEEE
T ss_pred CEEEEEecCCCCccceEEEEECCCCCeEEe
Confidence 987777544 4499999998876544
No 185
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.26 E-value=4.8e-09 Score=87.01 Aligned_cols=189 Identities=11% Similarity=0.070 Sum_probs=124.7
Q ss_pred CceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC----
Q psy6442 6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG---- 81 (231)
Q Consensus 6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~---- 81 (231)
+|.++|..+++.+.++.....+ .+.++||++.+..+..... ...-+..+++|.++|..+.+.+..+...
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~-----~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~ 120 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFS-----RIAKGKRTDYVEVFDPVTFLPIADIELPDAPR 120 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEecccc-----ccccCCCCCeEEEEECCCCcEEEEEECCCccc
Confidence 7899999999999888765555 8899998765432110000 0000113678999999988888777654
Q ss_pred ----CcceeEEEccCCCEEEEEc---CCeEEEEECCCcceEEe-eeccceeE----------------------------
Q psy6442 82 ----AVPNSLEISRDGTTITVTH---GSCVTFLDANSLELIKE-HKVPAQVH---------------------------- 125 (231)
Q Consensus 82 ----~~~~~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~-~~~~~~~~---------------------------- 125 (231)
..+..++++||++.+++.. .+.+.++| .+.+.+.. ...+..+.
T Consensus 121 ~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~ 199 (373)
T 2mad_H 121 FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA 199 (373)
T ss_pred cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEE
Confidence 3467899999999988753 36788899 87766555 32210000
Q ss_pred --------------------------E----------E---------------------------------EEEecCCCC
Q psy6442 126 --------------------------S----------A---------------------------------SLLLNSERP 136 (231)
Q Consensus 126 --------------------------~----------~---------------------------------~~~~~~~~~ 136 (231)
. . .+.+++++.
T Consensus 200 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~ 279 (373)
T 2mad_H 200 GAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD 279 (373)
T ss_pred EEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCC
Confidence 0 0 001122222
Q ss_pred EEEEecC----------CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC-EEEEee-CCCcEEEEeCCCCCeeeee
Q psy6442 137 IFVCGGE----------DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE-LYASGS-EDGTLRLWQTNVGKTYGLW 203 (231)
Q Consensus 137 ~~~~g~~----------d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~-~laS~s-~d~~v~iwd~~~~~~~~~~ 203 (231)
.+..... ...|.++|..+++.+.++.. ......++|+|||+ ++.++. .+++|.++|+.+++.....
T Consensus 280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 2222211 24688889888888777752 23578999999998 777776 5999999999999988764
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.23 E-value=4.1e-10 Score=91.47 Aligned_cols=165 Identities=18% Similarity=0.196 Sum_probs=105.2
Q ss_pred CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCC---C--CEEEEeCCCCCceEEE
Q psy6442 4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAED---K--TVRLWDVSASAEVQKL 78 (231)
Q Consensus 4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D---~--ti~iwd~~~~~~~~~~ 78 (231)
++++++|+..+|+... + ..+..+.|+|+|+.++. ++.+ + .|.+||+.+++.....
T Consensus 42 ~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~---------------~~~~~~~~~~~l~~~~~~~g~~~~l~ 101 (347)
T 2gop_A 42 ENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAF---------------MRANEEKKVSEIWVADLETLSSKKIL 101 (347)
T ss_dssp EEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEE---------------EEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred cceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEE---------------EEeccCCCcceEEEEECCCCceEEEE
Confidence 5678888988776533 4 56788999999776543 3322 2 4778888887766555
Q ss_pred EeCCcceeEEEccCCCEEEEEc----------------------------CCeEEEEECCCcceEEeeeccceeEEEEEE
Q psy6442 79 EFGAVPNSLEISRDGTTITVTH----------------------------GSCVTFLDANSLELIKEHKVPAQVHSASLL 130 (231)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~----------------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 130 (231)
.... +..++|+||++.++... ...+.+||..+.+.++....+ .+....
T Consensus 102 ~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~-- 177 (347)
T 2gop_A 102 EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGI-- 177 (347)
T ss_dssp EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEE--
T ss_pred cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-Cccccc--
Confidence 5555 88999999999776542 146778888776652333222 333333
Q ss_pred ecCCCCEEEEecCC---------CeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCC--------CcEEEEe
Q psy6442 131 LNSERPIFVCGGED---------LKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSED--------GTLRLWQ 193 (231)
Q Consensus 131 ~~~~~~~~~~g~~d---------~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d--------~~v~iwd 193 (231)
++|++ +++++..+ ..|+.+| +++ ...+..+ ..+..+ +|||++|+.++.+ ..|.+||
T Consensus 178 ~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 178 WHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp EETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred CCCCe-EEEEEecccccccccccccEEEeC--CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC
Confidence 47888 66666433 2566666 444 3344334 555554 9999988877754 3577888
Q ss_pred CCCCCeee
Q psy6442 194 TNVGKTYG 201 (231)
Q Consensus 194 ~~~~~~~~ 201 (231)
+++...
T Consensus 251 --~~~~~~ 256 (347)
T 2gop_A 251 --GKEVMG 256 (347)
T ss_dssp --SSCEEE
T ss_pred --CCceEe
Confidence 555443
No 187
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.22 E-value=2.2e-10 Score=94.41 Aligned_cols=139 Identities=13% Similarity=0.034 Sum_probs=88.7
Q ss_pred eCCCCEEEEeCCCCCceEEEEeCCcceeEEEcc-CCCEEE-EEcC------CeEEEEECCCcceEEeeeccceeEEEEEE
Q psy6442 59 AEDKTVRLWDVSASAEVQKLEFGAVPNSLEISR-DGTTIT-VTHG------SCVTFLDANSLELIKEHKVPAQVHSASLL 130 (231)
Q Consensus 59 s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~-~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 130 (231)
..+..|.+||+.+++..........+..+.|+| ++..++ +..+ ..+.+++......................
T Consensus 165 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEF 244 (396)
T ss_dssp CCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEE
T ss_pred CCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceE
Confidence 356689999999887765555566778899999 777554 3332 35777887654432222211111222334
Q ss_pred ecCCCCEEEEecCC-----CeEEEEeCCCcceeeeccCCCCCeeEEEEcC-CCCEEEEee----------------CCCc
Q psy6442 131 LNSERPIFVCGGED-----LKMYKFDYSTGAEIESFKGHFGPIHCVKFSP-DGELYASGS----------------EDGT 188 (231)
Q Consensus 131 ~~~~~~~~~~g~~d-----~~i~~~d~~~~~~~~~~~~h~~~V~~v~~sp-d~~~laS~s----------------~d~~ 188 (231)
++|+++.++..+.+ ..|++||+.+++...... .. ... +.|+| ||+++++++ .+..
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~ 321 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPF 321 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCE
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCc
Confidence 58888876665433 459999998776433221 11 123 89999 999888764 3478
Q ss_pred EEEEeCCCCCee
Q psy6442 189 LRLWQTNVGKTY 200 (231)
Q Consensus 189 v~iwd~~~~~~~ 200 (231)
|.+||+.+++..
T Consensus 322 i~~~d~~~~~~~ 333 (396)
T 3c5m_A 322 LYVLNTKAKSAQ 333 (396)
T ss_dssp EEEEETTTTBCC
T ss_pred EEEEecccCceE
Confidence 999999888754
No 188
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.21 E-value=3.9e-09 Score=84.36 Aligned_cols=198 Identities=11% Similarity=0.112 Sum_probs=123.3
Q ss_pred cCCCceeeeccCCCeEeeee----cccccEEEEEECCC-CceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEE
Q psy6442 3 VDGKPMLRQGDTGDWIGTFE----GHKGCVWGVDINKD-ASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQK 77 (231)
Q Consensus 3 ~d~~~~~~~~~~g~~i~~l~----gH~~~V~~~~~~~~-~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~ 77 (231)
.++.|++|+..+|+...... ++.+.+.++.++++ ++ |..+.....|.+||.. ++....
T Consensus 44 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~----------------l~v~~~~~~l~~~d~~-g~~~~~ 106 (314)
T 1pjx_A 44 PAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ----------------LFVADMRLGLLVVQTD-GTFEEI 106 (314)
T ss_dssp ECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE----------------EEEEETTTEEEEEETT-SCEEEC
T ss_pred CCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc----------------EEEEECCCCEEEEeCC-CCEEEE
Confidence 35678888877777643222 25567888888876 43 3334444578889987 554322
Q ss_pred -EEe-----CCcceeEEEccCCCEEEEEcC----------------CeEEEEECCCcceEEeeeccceeEEEEEEec---
Q psy6442 78 -LEF-----GAVPNSLEISRDGTTITVTHG----------------SCVTFLDANSLELIKEHKVPAQVHSASLLLN--- 132 (231)
Q Consensus 78 -~~~-----~~~~~~v~~~~~~~~~~~~~~----------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--- 132 (231)
... ...+..+++.++++..+.... +.+..++.. .+.............+.+ +
T Consensus 107 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~--~~~~ 183 (314)
T 1pjx_A 107 AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAV--RHMN 183 (314)
T ss_dssp CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEE--EECT
T ss_pred EeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEE--eccc
Confidence 111 124789999999987665532 456667654 333222211112223333 5
Q ss_pred -CCCCE-EEEecCCCeEEEEeCC-Ccc-----eeeeccCCC-CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442 133 -SERPI-FVCGGEDLKMYKFDYS-TGA-----EIESFKGHF-GPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW 203 (231)
Q Consensus 133 -~~~~~-~~~g~~d~~i~~~d~~-~~~-----~~~~~~~h~-~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~ 203 (231)
+++.. .++...++.|+.||.. ++. ....+.++. ..+..++++++|+++++...++.|.+||..+++.....
T Consensus 184 d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~ 263 (314)
T 1pjx_A 184 DGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI 263 (314)
T ss_dssp TSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE
T ss_pred CCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE
Confidence 77754 4555567899999875 343 233444554 66889999999999999888899999999877766555
Q ss_pred eccCCcccCCCCCCcccc
Q psy6442 204 KCIEGGLNNSLGLDSSGH 221 (231)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~ 221 (231)
.. .......++++++|+
T Consensus 264 ~~-~~~~~~~i~~~~dg~ 280 (314)
T 1pjx_A 264 RC-PFEKPSNLHFKPQTK 280 (314)
T ss_dssp EC-SSSCEEEEEECTTSS
T ss_pred eC-CCCCceeEEECCCCC
Confidence 43 224455566666665
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.21 E-value=1.9e-09 Score=96.42 Aligned_cols=211 Identities=11% Similarity=0.019 Sum_probs=120.1
Q ss_pred CceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCC-CEEEEEeCCCCEEEEeCCCCCceEEE--Ee--
Q psy6442 6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNN-TRLISCAEDKTVRLWDVSASAEVQKL--EF-- 80 (231)
Q Consensus 6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~-~~l~s~s~D~ti~iwd~~~~~~~~~~--~~-- 80 (231)
+|++|+..+|+.+.....+ ..+..+.|+|||+.++.+..+...... ...-.......|++|++.++.....+ ..
T Consensus 152 ~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~ 230 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD 230 (710)
T ss_dssp EEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred EEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC
Confidence 7999999999887643323 236678999987665443322110000 00000001223999999887643222 22
Q ss_pred -CCcceeEEEccCCCEEEEEc------CCeEEEEECCC------cc-eEEeeeccceeEEEEEEecCCCCEEEEecC---
Q psy6442 81 -GAVPNSLEISRDGTTITVTH------GSCVTFLDANS------LE-LIKEHKVPAQVHSASLLLNSERPIFVCGGE--- 143 (231)
Q Consensus 81 -~~~~~~v~~~~~~~~~~~~~------~~~i~~~d~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--- 143 (231)
......+.++||++.++... ...+.++|..+ .. .......+.......+ ++++..++..+.
T Consensus 231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~--s~dg~~l~~~s~~~~ 308 (710)
T 2xdw_A 231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV--TNEGTVFTFKTNRHS 308 (710)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEE--EEETTEEEEEECTTC
T ss_pred CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEE--eccCCEEEEEECCCC
Confidence 12356899999999876532 45788899765 32 2333322221111223 445555444332
Q ss_pred -CCeEEEEeCCCcc--eeeeccCCCC--CeeEEEEcCCCCEEEEeeCCCc--EEEEeCCCCCeeeeeeccCCcccCCCCC
Q psy6442 144 -DLKMYKFDYSTGA--EIESFKGHFG--PIHCVKFSPDGELYASGSEDGT--LRLWQTNVGKTYGLWKCIEGGLNNSLGL 216 (231)
Q Consensus 144 -d~~i~~~d~~~~~--~~~~~~~h~~--~V~~v~~spd~~~laS~s~d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 216 (231)
...|+.||+.++. ....+..|.. .+.+++|++++.++++...|+. |.+|++.+|+.......- ......+++
T Consensus 309 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~ 387 (710)
T 2xdw_A 309 PNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSG 387 (710)
T ss_dssp TTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-SSEEEEEEC
T ss_pred CCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-CceEEEEec
Confidence 3479999997764 2344444543 6888999988889999998885 556677677755444432 233333444
Q ss_pred Cccc
Q psy6442 217 DSSG 220 (231)
Q Consensus 217 ~~~~ 220 (231)
.+++
T Consensus 388 s~d~ 391 (710)
T 2xdw_A 388 QKKD 391 (710)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 4443
No 190
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.17 E-value=4.6e-09 Score=82.22 Aligned_cols=165 Identities=10% Similarity=0.105 Sum_probs=104.0
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCceEEEEeC--CcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeecc-ceeEEE
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAEVQKLEFG--AVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVP-AQVHSA 127 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~-~~~~~~ 127 (231)
+..+++.. ++.|.+||...+... .+... ..+..+++.+++...++. .++.+..++............. .....+
T Consensus 78 g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i 155 (270)
T 1rwi_B 78 GTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGV 155 (270)
T ss_dssp CCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCE
T ss_pred CCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeE
Confidence 34344444 889999998765432 22222 467899999998855443 3568888876544332211111 122223
Q ss_pred EEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccC
Q psy6442 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIE 207 (231)
Q Consensus 128 ~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~ 207 (231)
..++++.++++...++.|+.||............+...+.+++++|+|.++++...++.|.+|+........ .....
T Consensus 156 --~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~ 232 (270)
T 1rwi_B 156 --AVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTG 232 (270)
T ss_dssp --EECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCCS
T ss_pred --EEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccCC
Confidence 347788877777778899999987665444333344678999999999999988889999999986654322 11111
Q ss_pred CcccCCCCCCcccc
Q psy6442 208 GGLNNSLGLDSSGH 221 (231)
Q Consensus 208 ~~~~~~~~~~~~~~ 221 (231)
-..+..|+++++|.
T Consensus 233 ~~~p~~i~~~~~g~ 246 (270)
T 1rwi_B 233 LNTPLAVAVDSDRT 246 (270)
T ss_dssp CSCEEEEEECTTCC
T ss_pred CCCceeEEECCCCC
Confidence 12345566666664
No 191
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.15 E-value=9.3e-10 Score=91.46 Aligned_cols=134 Identities=10% Similarity=0.069 Sum_probs=96.1
Q ss_pred CCEEEEEeCCCCEEEEeCCCCC-----------ceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEee-e
Q psy6442 52 NTRLISCAEDKTVRLWDVSASA-----------EVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEH-K 119 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~ 119 (231)
.+.+++|+.| .+++|++.+.. ....+.++. +..++| ++..++++.++.+++||.......... .
T Consensus 49 ~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~sl~~~~~~~~ 124 (388)
T 1xip_A 49 KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALYSLDLEELSEFRTVTS 124 (388)
T ss_dssp TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEEEEESSSTTCEEEEEE
T ss_pred CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEEEEEchhhhccCccce
Confidence 4567888887 56679864322 224456666 999999 888888888899999998765543322 2
Q ss_pred ccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442 120 VPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT 199 (231)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~ 199 (231)
....+..+... .+ .++.+..|+.+++||++++.... +...|.+++|||+| ++.+..||++++|+...++.
T Consensus 125 ~~~~v~~i~~~-~p---~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~ 194 (388)
T 1xip_A 125 FEKPVFQLKNV-NN---TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEM 194 (388)
T ss_dssp CSSCEEEEEEC-SS---EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEE
T ss_pred eecceeeEEec-CC---CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccc
Confidence 22333332221 22 37888999999999998776543 45689999999999 67899999999998877663
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.15 E-value=9.4e-09 Score=80.41 Aligned_cols=145 Identities=8% Similarity=0.042 Sum_probs=97.6
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeecc-ceeEEEE
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVP-AQVHSAS 128 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~-~~~~~~~ 128 (231)
+..+++...++.|.+|+..+......... ...+..++++++++..++.. ++.|..++............. .... .
T Consensus 119 g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~--~ 196 (270)
T 1rwi_B 119 GAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPW--G 196 (270)
T ss_dssp CCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEE--E
T ss_pred CCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCce--E
Confidence 33456666678899997655443222111 23678999999998554443 468999997765443322111 1223 3
Q ss_pred EEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442 129 LLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198 (231)
Q Consensus 129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~ 198 (231)
+..++++.+.++...++.|+.|+............+...+.+++++|+|+++++...++.|++++....+
T Consensus 197 i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 197 IAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred EEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 4447888877777778899999986544333222344678999999999999999999999999987654
No 193
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.15 E-value=7.2e-09 Score=85.46 Aligned_cols=171 Identities=11% Similarity=0.071 Sum_probs=120.1
Q ss_pred CCCceeeeccCCCeEeeeecc------cccEEEEEECCCCceeEecccc--c--------------c-c-----------
Q psy6442 4 DGKPMLRQGDTGDWIGTFEGH------KGCVWGVDINKDASKAASGAAD--F--------------Q-A----------- 49 (231)
Q Consensus 4 d~~~~~~~~~~g~~i~~l~gH------~~~V~~~~~~~~~~~~~s~~~d--~--------------~-~----------- 49 (231)
+++|.+|+..+++.+.++..+ ......+.++|+|+.+..+... . . +
T Consensus 80 ~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~ 159 (361)
T 2oiz_A 80 SDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQ 159 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEEC
T ss_pred CCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEc
Confidence 667999999999998887632 2345678999999988765321 0 0 0
Q ss_pred -cCCCEEEEEeCCCCEEEEeCCC-CCceE------------------------------------EEEeC----------
Q psy6442 50 -KNNTRLISCAEDKTVRLWDVSA-SAEVQ------------------------------------KLEFG---------- 81 (231)
Q Consensus 50 -~~~~~l~s~s~D~ti~iwd~~~-~~~~~------------------------------------~~~~~---------- 81 (231)
.....+++.+.||++.+|+... ++... .+...
T Consensus 160 p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~ 239 (361)
T 2oiz_A 160 PNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPW 239 (361)
T ss_dssp TTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEE
T ss_pred CCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccc
Confidence 0124567777888888877643 22210 00000
Q ss_pred --------------CcceeEEEccCCCEEEEEc------------CCeEEEEECCCcceEEeeeccceeEEEEEEecCCC
Q psy6442 82 --------------AVPNSLEISRDGTTITVTH------------GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSER 135 (231)
Q Consensus 82 --------------~~~~~v~~~~~~~~~~~~~------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (231)
.....++++|++..+++.. ...+.+||..+.+.++.+..+. ...+ .++|++
T Consensus 240 ~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~i--a~spdg 316 (361)
T 2oiz_A 240 SLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSM--TIDQQR 316 (361)
T ss_dssp ESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEE--EEETTT
T ss_pred cccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEE--EECCCC
Confidence 0011268889988877652 2479999999999888887766 4444 448899
Q ss_pred CEEEEecCCCeEEEEeCCCc--ceeeeccCCCCCeeEEEEcCCCC
Q psy6442 136 PIFVCGGEDLKMYKFDYSTG--AEIESFKGHFGPIHCVKFSPDGE 178 (231)
Q Consensus 136 ~~~~~g~~d~~i~~~d~~~~--~~~~~~~~h~~~V~~v~~spd~~ 178 (231)
+++++++. +.|.+||..++ +.+.++..+....+.++++|+|+
T Consensus 317 ~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 317 NLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 98888887 99999999999 88888766777889999999985
No 194
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.14 E-value=5.1e-09 Score=88.12 Aligned_cols=192 Identities=16% Similarity=0.158 Sum_probs=128.0
Q ss_pred CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC---
Q psy6442 5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG--- 81 (231)
Q Consensus 5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~--- 81 (231)
++|.+.|..+++.+.++.-...+ .+.++||++.+..+..... +...+..+++|.++|..+.+.+..+..+
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~-----~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~ 171 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFE-----RIARGKRTDYVEVFDPVTFLPIADIELPDAP 171 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEE-----ETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEecccc-----ccccCCCCCEEEEEECCCCcEEEEEECCCcc
Confidence 78999999999999998755556 7999999765432110000 0000114678999999999998888774
Q ss_pred -----CcceeEEEccCCCEEEEEc---CCeEEEEECCCcceEEeeeccceeEE--------EE-----------------
Q psy6442 82 -----AVPNSLEISRDGTTITVTH---GSCVTFLDANSLELIKEHKVPAQVHS--------AS----------------- 128 (231)
Q Consensus 82 -----~~~~~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~--------~~----------------- 128 (231)
..+..++++||++.++++. .+.+.++|..+.+.+.++..+..... ..
T Consensus 172 r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v 251 (426)
T 3c75_H 172 RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGET 251 (426)
T ss_dssp CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCC
T ss_pred ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcE
Confidence 4578899999999998864 46899999988777665543210000 00
Q ss_pred ------------------------------------------------------------------------EEecCCCC
Q psy6442 129 ------------------------------------------------------------------------LLLNSERP 136 (231)
Q Consensus 129 ------------------------------------------------------------------------~~~~~~~~ 136 (231)
+.+++++.
T Consensus 252 ~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~ 331 (426)
T 3c75_H 252 KVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSD 331 (426)
T ss_dssp EEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGT
T ss_pred EEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCC
Confidence 00011112
Q ss_pred EEEEec----------CCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC-EEEEee-CCCcEEEEeCCCCCeeeeee
Q psy6442 137 IFVCGG----------EDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE-LYASGS-EDGTLRLWQTNVGKTYGLWK 204 (231)
Q Consensus 137 ~~~~g~----------~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~-~laS~s-~d~~v~iwd~~~~~~~~~~~ 204 (231)
.+.... ....|.++|..+.+.+.++..- .....++|+||++ ++.++. .++.|.++|+.+++....+.
T Consensus 332 rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~ 410 (426)
T 3c75_H 332 RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVD 410 (426)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEec
Confidence 111111 1235777777777766666421 2478899999998 777777 69999999999999988874
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.11 E-value=1.1e-08 Score=91.32 Aligned_cols=198 Identities=13% Similarity=0.037 Sum_probs=116.6
Q ss_pred CcCCCceeeeccCCCeEeeeecccccE--EEEEECCCCceeEeccccccccCCCEEEEEeCCCC-------------EEE
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEGHKGCV--WGVDINKDASKAASGAADFQAKNNTRLISCAEDKT-------------VRL 66 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V--~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~t-------------i~i 66 (231)
+.+.+|++|+..+|+.+. ..+-..+ ..+.|+|||+. |+.++.|.+ |++
T Consensus 144 ~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~---------------l~~~~~d~~~~~~~~~~~~~~~v~~ 206 (695)
T 2bkl_A 144 ADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKG---------------FYYEWLPTDPSIKVDERPGYTTIRY 206 (695)
T ss_dssp CSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSE---------------EEEEECCCCTTSCGGGGGGGCEEEE
T ss_pred CceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCE---------------EEEEEecCCCCCccccCCCCCEEEE
Confidence 345789999999998751 1122222 57889998654 555556655 999
Q ss_pred EeCCCCCceEEE--Ee---CCcceeEEEccCCCEEEEE-cCC----eEEEEECCCcceEEeeeccceeEEEEEEecCCCC
Q psy6442 67 WDVSASAEVQKL--EF---GAVPNSLEISRDGTTITVT-HGS----CVTFLDANSLELIKEHKVPAQVHSASLLLNSERP 136 (231)
Q Consensus 67 wd~~~~~~~~~~--~~---~~~~~~v~~~~~~~~~~~~-~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (231)
|++.++.....+ .. ...+..+.++||++.++.. .++ .+.+++................... + .+ ++.
T Consensus 207 ~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~-~-~~-~g~ 283 (695)
T 2bkl_A 207 HTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEV-H-AW-KDR 283 (695)
T ss_dssp EETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEE-E-EE-TTE
T ss_pred EECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEE-E-ec-CCc
Confidence 999887643222 22 1356789999999976653 222 5666665443322222211122211 2 13 333
Q ss_pred EEEEec---CCCeEEEEeCCCcce--eeec-cCC-CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC-CCCeeeeeeccCC
Q psy6442 137 IFVCGG---EDLKMYKFDYSTGAE--IESF-KGH-FGPIHCVKFSPDGELYASGSEDGTLRLWQTN-VGKTYGLWKCIEG 208 (231)
Q Consensus 137 ~~~~g~---~d~~i~~~d~~~~~~--~~~~-~~h-~~~V~~v~~spd~~~laS~s~d~~v~iwd~~-~~~~~~~~~~~~~ 208 (231)
+++... .+.+|+.||+.++.. ...+ ..+ ...+.+++|+ ++.++++...|+..+||.+. .++.......-..
T Consensus 284 l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~ 362 (695)
T 2bkl_A 284 FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGV 362 (695)
T ss_dssp EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSS
T ss_pred EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCC
Confidence 555544 357899999977642 2333 333 4568888998 67889999999999988654 3554333332223
Q ss_pred cccCCCCCCccc
Q psy6442 209 GLNNSLGLDSSG 220 (231)
Q Consensus 209 ~~~~~~~~~~~~ 220 (231)
.....+++.+++
T Consensus 363 ~~v~~~~~s~d~ 374 (695)
T 2bkl_A 363 GAASNLMGLEDL 374 (695)
T ss_dssp SEECCCBSCTTC
T ss_pred eEEEEeecCCCC
Confidence 444455555544
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.10 E-value=7.9e-08 Score=75.92 Aligned_cols=164 Identities=9% Similarity=0.094 Sum_probs=103.4
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCceEEEEe---CCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeecc-ceeEE
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVP-AQVHS 126 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~-~~~~~ 126 (231)
+..+++...++.|..||.. ++ ...+.. ...+..+++.+++...++.. ++.+..+|. +.... .+..+ .....
T Consensus 68 g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~~ 143 (299)
T 2z2n_A 68 GEVWFTENAANKIGRITKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSYP 143 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCE
T ss_pred CCEEEeCCCCCeEEEECCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCCC
Confidence 3445555557889999876 33 333332 23678899999987666553 568888987 33332 22211 11112
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEeCCCcceeee-ccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442 127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES-FKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~-~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~ 205 (231)
..+..++++.+.++...++.|+.+|. +++.... +..+...+.+++++|+++++++...++.|.+|+. +++... +..
T Consensus 144 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~ 220 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKI 220 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC
T ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EEC
Confidence 23344778888777777789999998 6554332 3344566889999999998888878889999999 666432 221
Q ss_pred c-CCcccCCCCCCccccc
Q psy6442 206 I-EGGLNNSLGLDSSGHL 222 (231)
Q Consensus 206 ~-~~~~~~~~~~~~~~~~ 222 (231)
- ....+..|.++.+|.+
T Consensus 221 ~~~~~~~~~i~~~~~g~l 238 (299)
T 2z2n_A 221 PTPNARPHAITAGAGIDL 238 (299)
T ss_dssp SSTTCCEEEEEECSTTCE
T ss_pred CCCCCCceeEEECCCCCE
Confidence 1 1233445566666553
No 197
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.09 E-value=6.7e-09 Score=85.88 Aligned_cols=181 Identities=10% Similarity=0.046 Sum_probs=125.1
Q ss_pred CceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEe----------CCCCEEEEeCCCCCce
Q psy6442 6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCA----------EDKTVRLWDVSASAEV 75 (231)
Q Consensus 6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s----------~D~ti~iwd~~~~~~~ 75 (231)
+|.+.|..+++.+.++.-...+ .+.++|++++ ++.+. .+++|.+||..+++.+
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~---------------lyVan~~~~r~~~G~~~~~VsviD~~T~~vv 109 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSD---------------FALASTSFARSAKGKRTDYVEVFDPVTFLPI 109 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSC---------------EEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCE---------------EEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence 7789999999999998755556 6999998765 34443 3688999999999999
Q ss_pred EEEEeC--------CcceeEEEccCCCEEEEEc---CCeEEE--EECCCcceEEe-------------------------
Q psy6442 76 QKLEFG--------AVPNSLEISRDGTTITVTH---GSCVTF--LDANSLELIKE------------------------- 117 (231)
Q Consensus 76 ~~~~~~--------~~~~~v~~~~~~~~~~~~~---~~~i~~--~d~~~~~~~~~------------------------- 117 (231)
.++..+ ..+..++++||++.++++. ...+.+ +|..+...+..
T Consensus 110 ~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~ 189 (368)
T 1mda_H 110 ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAA 189 (368)
T ss_dssp EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEE
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEE
Confidence 998875 4588999999999888764 345666 66533000000
Q ss_pred eeccc-------------------------------------eeE----------------------------EEE---E
Q psy6442 118 HKVPA-------------------------------------QVH----------------------------SAS---L 129 (231)
Q Consensus 118 ~~~~~-------------------------------------~~~----------------------------~~~---~ 129 (231)
..... .+. ... +
T Consensus 190 vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v 269 (368)
T 1mda_H 190 SDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV 269 (368)
T ss_dssp EECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred EECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceee
Confidence 00000 000 000 1
Q ss_pred EecCCCCEEEEecC---------CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC-EEEEee-CCCcEEEEeCCCCC
Q psy6442 130 LLNSERPIFVCGGE---------DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE-LYASGS-EDGTLRLWQTNVGK 198 (231)
Q Consensus 130 ~~~~~~~~~~~g~~---------d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~-~laS~s-~d~~v~iwd~~~~~ 198 (231)
.+++++..+..+.. +..+.++|+.+.+.+.++.... ....++|+|||+ ++++.. .+++|.++|+.+++
T Consensus 270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred EEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 13445555444322 2345599999998888876433 588999999997 667777 69999999999999
Q ss_pred eeeeee
Q psy6442 199 TYGLWK 204 (231)
Q Consensus 199 ~~~~~~ 204 (231)
......
T Consensus 349 vv~~I~ 354 (368)
T 1mda_H 349 DQSSVE 354 (368)
T ss_dssp EEEECC
T ss_pred EEEEEE
Confidence 887765
No 198
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.04 E-value=1.9e-07 Score=74.55 Aligned_cols=180 Identities=13% Similarity=0.078 Sum_probs=110.7
Q ss_pred CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC--
Q psy6442 4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG-- 81 (231)
Q Consensus 4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~-- 81 (231)
.++|+.|+..+++. ..+. +.+.+.++.++++++ |+.+. ++.|.+||..+++........
T Consensus 34 ~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~----------------l~v~~-~~~l~~~d~~~g~~~~~~~~~~~ 94 (297)
T 3g4e_A 34 AKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGG----------------YVATI-GTKFCALNWKEQSAVVLATVDND 94 (297)
T ss_dssp TTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSS----------------EEEEE-TTEEEEEETTTTEEEEEEECCTT
T ss_pred CCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCC----------------EEEEE-CCeEEEEECCCCcEEEEEecCCC
Confidence 35566666655544 2222 345677777777654 23333 567999998877654333321
Q ss_pred ---CcceeEEEccCCCEEEEEcC------------CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEE-EEecCCC
Q psy6442 82 ---AVPNSLEISRDGTTITVTHG------------SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIF-VCGGEDL 145 (231)
Q Consensus 82 ---~~~~~v~~~~~~~~~~~~~~------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~ 145 (231)
..++.++++|+++..+.... +.+..++.. ............... +.+++++..+ ++...++
T Consensus 95 ~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~png--i~~spdg~~lyv~~~~~~ 171 (297)
T 3g4e_A 95 KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNG--LDWSLDHKIFYYIDSLSY 171 (297)
T ss_dssp CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEE--EEECTTSCEEEEEEGGGT
T ss_pred CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccc--eEEcCCCCEEEEecCCCC
Confidence 24678999999996554321 234444443 222211111112223 3447888755 5556678
Q ss_pred eEEEEeC--CCcce-----eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442 146 KMYKFDY--STGAE-----IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 146 ~i~~~d~--~~~~~-----~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~ 205 (231)
+|+.|+. .++.. +..+..+...+..++++++|+++++....+.|..||..+|+.......
T Consensus 172 ~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 172 SVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp EEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred cEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 8999986 44432 233334456788999999999999988889999999999998777654
No 199
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.02 E-value=9.1e-08 Score=79.33 Aligned_cols=190 Identities=17% Similarity=0.193 Sum_probs=125.8
Q ss_pred cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC
Q psy6442 3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA 82 (231)
Q Consensus 3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~ 82 (231)
.+++|.+.|..+++.+.+......+ . +.++|+|+.+..+..-.. +..-+..+++|.+||..+.+.+..+..+.
T Consensus 57 ~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~-----r~~~G~~~~~VsviD~~t~~v~~~I~v~~ 129 (386)
T 3sjl_D 57 AVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFS-----RIARGERTDYVEVFDPVTLLPTADIELPD 129 (386)
T ss_dssp SSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEE-----ETTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred CCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEccccc-----ccccCCCCCEEEEEECCCCeEEEEEECCC
Confidence 3678999999999999998865666 4 999999765432110000 00001246789999999999998887643
Q ss_pred --------cceeEEEccCCCEEEEEc---CCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEe
Q psy6442 83 --------VPNSLEISRDGTTITVTH---GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFD 151 (231)
Q Consensus 83 --------~~~~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d 151 (231)
.+..++++||++.++++. ++.+.++|..+.+.++++..+.... + .....+.+++.+.|+++...+
T Consensus 130 g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~---~-~P~g~~~~~~~~~DG~~~~v~ 205 (386)
T 3sjl_D 130 APRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH---I-FPTAPDTFFMHCRDGSLAKVA 205 (386)
T ss_dssp CCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE---E-EEEETTEEEEEETTSCEEEEE
T ss_pred ccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcce---e-ecCCCceeEEECCCCCEEEEE
Confidence 688999999999988764 4689999999999988886654211 1 122344555667788888888
Q ss_pred CCC-cceeeeccCC----CCCee-EEEEc-CCCCEEEEeeCCCcEEEEeCCCCC--eeeeee
Q psy6442 152 YST-GAEIESFKGH----FGPIH-CVKFS-PDGELYASGSEDGTLRLWQTNVGK--TYGLWK 204 (231)
Q Consensus 152 ~~~-~~~~~~~~~h----~~~V~-~v~~s-pd~~~laS~s~d~~v~iwd~~~~~--~~~~~~ 204 (231)
+.+ +....+...+ ..++. ..+|. ++|+++. .+.+++|.+.|...++ ....|.
T Consensus 206 ~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~ 266 (386)
T 3sjl_D 206 FGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVE 266 (386)
T ss_dssp CCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEE
T ss_pred CCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeeccee
Confidence 865 4432221111 12232 24664 6776544 5558999999997664 344454
No 200
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.02 E-value=8.2e-11 Score=97.48 Aligned_cols=179 Identities=15% Similarity=0.050 Sum_probs=96.8
Q ss_pred CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG 81 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~ 81 (231)
+.||+|+.|+..+|+.+-+++. +.+.+..+. .++..+++++.|++|+.||..+++.+......
T Consensus 16 s~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~---------------~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~ 78 (369)
T 2hz6_A 16 TLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTH---------------VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT 78 (369)
T ss_dssp ETTSEEEEEETTTCCEEEEEEC--CCSCCCC--------------------CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred cCCCEEEEEECCCCCEEEEecC--CCceecceE---------------cCCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence 5688999999999998877765 333322222 23445777789999999999888876554332
Q ss_pred C--cce-eEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCccee
Q psy6442 82 A--VPN-SLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI 158 (231)
Q Consensus 82 ~--~~~-~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~ 158 (231)
. .+. +..+..++..++.+.++.+..||..+++.+..+..+... . ..|.+..+++++.++.++.||.++++.+
T Consensus 79 ~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~---~--~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 79 IPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFAD---S--LSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp HHHHHTTCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred CccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCcc---c--ccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 1 111 111112333333345678999999888877665443211 1 1336667888888999999999999877
Q ss_pred eeccCCCCCeeEEEEcCCC---CEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442 159 ESFKGHFGPIHCVKFSPDG---ELYASGSEDGTLRLWQTNVGKTYGLWK 204 (231)
Q Consensus 159 ~~~~~h~~~V~~v~~spd~---~~laS~s~d~~v~iwd~~~~~~~~~~~ 204 (231)
..+..+. ....+++++. ..+..++.|+.|..||..+|+.....+
T Consensus 154 W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 154 WNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 6654221 2223344432 456678899999999999998654433
No 201
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.01 E-value=5.6e-08 Score=81.54 Aligned_cols=147 Identities=13% Similarity=0.150 Sum_probs=94.1
Q ss_pred CCEEEEEeCCC--CEEEEeCCCCCceEEE----E-eCCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEe----ee
Q psy6442 52 NTRLISCAEDK--TVRLWDVSASAEVQKL----E-FGAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKE----HK 119 (231)
Q Consensus 52 ~~~l~s~s~D~--ti~iwd~~~~~~~~~~----~-~~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~----~~ 119 (231)
++.|+.+..++ .|.+++...+.....+ . ....+..++++|++..+++.. ++.|..+|......... ..
T Consensus 182 g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~ 261 (409)
T 3hrp_A 182 KQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS 261 (409)
T ss_dssp SSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC
T ss_pred CCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc
Confidence 44567777765 6888887665544444 1 234678999999555555543 46789999876543221 11
Q ss_pred ccceeEEE-EEEecC-CCCEEEEecCCCeEEEEeCCCcceeeeccCC---------------CCCeeEEEEcCCCCEEEE
Q psy6442 120 VPAQVHSA-SLLLNS-ERPIFVCGGEDLKMYKFDYSTGAEIESFKGH---------------FGPIHCVKFSPDGELYAS 182 (231)
Q Consensus 120 ~~~~~~~~-~~~~~~-~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h---------------~~~V~~v~~spd~~~laS 182 (231)
........ .+.+++ ++.++++-....+|+.|+.... +..+.++ -.....++++|+|+++++
T Consensus 262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva 339 (409)
T 3hrp_A 262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV 339 (409)
T ss_dssp SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE
T ss_pred CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE
Confidence 11111101 233467 4666777777889999987532 2233232 234789999999999998
Q ss_pred ee-CCCcEEEEeCCCCCee
Q psy6442 183 GS-EDGTLRLWQTNVGKTY 200 (231)
Q Consensus 183 ~s-~d~~v~iwd~~~~~~~ 200 (231)
-+ .++.|+.|+..+++..
T Consensus 340 d~~~~~~I~~~~~~~G~v~ 358 (409)
T 3hrp_A 340 DGFKGYCLRKLDILDGYVS 358 (409)
T ss_dssp ETTTTCEEEEEETTTTEEE
T ss_pred eCCCCCEEEEEECCCCEEE
Confidence 88 8999999998787643
No 202
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.01 E-value=3e-07 Score=80.22 Aligned_cols=201 Identities=13% Similarity=0.116 Sum_probs=133.0
Q ss_pred CcCCCceeeecc--CCCeEeeeecccccEEEEEEC----CCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCce
Q psy6442 2 CVDGKPMLRQGD--TGDWIGTFEGHKGCVWGVDIN----KDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEV 75 (231)
Q Consensus 2 ~~d~~~~~~~~~--~g~~i~~l~gH~~~V~~~~~~----~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~ 75 (231)
+.|+.|.++|.. +++.+.++....+ -..+.|+ |+|+++ +++.-.+++|.|+|..+.+.+
T Consensus 215 ~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l--------------~v~n~~~~~v~ViD~~t~~~~ 279 (567)
T 1qks_A 215 GRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYA--------------IAGAYWPPQYVIMDGETLEPK 279 (567)
T ss_dssp ETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEE--------------EEEEEETTEEEEEETTTCCEE
T ss_pred cCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEE--------------EEEEccCCeEEEEECCCCcEE
Confidence 357889999985 8888888775444 3678888 576553 445556699999999999888
Q ss_pred EEEEeCC------------cceeEEEccCCCEEEEE--cCCeEEEEECCCcceEEe--eeccceeEEEEEEecCCCCEEE
Q psy6442 76 QKLEFGA------------VPNSLEISRDGTTITVT--HGSCVTFLDANSLELIKE--HKVPAQVHSASLLLNSERPIFV 139 (231)
Q Consensus 76 ~~~~~~~------------~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 139 (231)
..+.... .+..+..++++..+++. ..+.+.++|..+...+.. +......+.. .+++++++++
T Consensus 280 ~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~--~~~pdgr~~~ 357 (567)
T 1qks_A 280 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDG--GLDGSHRYFI 357 (567)
T ss_dssp EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEE--EECTTSCEEE
T ss_pred EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCc--eECCCCCEEE
Confidence 8776421 34567778887765554 357899999776543332 2222223333 3478888765
Q ss_pred Ee-cCCCeEEEEeCCCcceeeeccC-----CCCCeeEEE-EcCC-CCEEEEee-CCCcEEEEeCCC-------CCeeeee
Q psy6442 140 CG-GEDLKMYKFDYSTGAEIESFKG-----HFGPIHCVK-FSPD-GELYASGS-EDGTLRLWQTNV-------GKTYGLW 203 (231)
Q Consensus 140 ~g-~~d~~i~~~d~~~~~~~~~~~~-----h~~~V~~v~-~spd-~~~laS~s-~d~~v~iwd~~~-------~~~~~~~ 203 (231)
.+ ..+.+|.++|..+++.+..+.- |.+ ..+. ++|+ +..+++.. .+++|.++|... .+..+..
T Consensus 358 va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg--~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i 435 (567)
T 1qks_A 358 TAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG--RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSF 435 (567)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred EEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc--cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEE
Confidence 54 4578899999999887765542 322 1222 6887 45556554 568999999988 5566666
Q ss_pred eccCCcccCCCCCCccccc
Q psy6442 204 KCIEGGLNNSLGLDSSGHL 222 (231)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~ 222 (231)
+.- +.-+.+|...++++.
T Consensus 436 ~~~-g~g~~~i~~~p~~~~ 453 (567)
T 1qks_A 436 PAL-GGGSLFIKTHPNSQY 453 (567)
T ss_dssp ECS-CSCCCCEECCTTCSE
T ss_pred ecC-CCCCEEEEeCCCCCe
Confidence 643 344566666666653
No 203
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.00 E-value=5.1e-07 Score=71.20 Aligned_cols=164 Identities=11% Similarity=0.123 Sum_probs=102.6
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCceEEEEe---CCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeecc-ceeEE
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVP-AQVHS 126 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~-~~~~~ 126 (231)
+..+++...++.|..+|.. ++. ..+.. ...+..+++.+++...++.. ++.+..++.. .+.. .+..+ .....
T Consensus 73 g~l~v~~~~~~~v~~~d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~ 148 (300)
T 2qc5_A 73 GDIWFTENGANKIGKLSKK-GGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYP 148 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCE
T ss_pred CCEEEEecCCCeEEEECCC-CCe-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCc
Confidence 3445555557889999987 544 33333 24678999999988766554 5688888876 3332 22222 11122
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEeCCCcceee-eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442 127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE-SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~-~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~ 205 (231)
..+..++++.+.++...++.|+.++. +++... .+..+...+..++++++++++++....+.|.+|+. +++... +..
T Consensus 149 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~ 225 (300)
T 2qc5_A 149 AFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE-YDI 225 (300)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC
T ss_pred eeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE-EEC
Confidence 23444778887777766788999998 554332 23344567899999999998888877888999998 555332 211
Q ss_pred -cCCcccCCCCCCccccc
Q psy6442 206 -IEGGLNNSLGLDSSGHL 222 (231)
Q Consensus 206 -~~~~~~~~~~~~~~~~~ 222 (231)
.....+..|.++.+|++
T Consensus 226 ~~~~~~~~~i~~d~~g~l 243 (300)
T 2qc5_A 226 PTPNARPHAITAGKNSEI 243 (300)
T ss_dssp SSTTCCEEEEEECSTTCE
T ss_pred CCCCCCceEEEECCCCCE
Confidence 11223345566666553
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.99 E-value=1.3e-07 Score=75.38 Aligned_cols=134 Identities=10% Similarity=0.159 Sum_probs=88.9
Q ss_pred CCEEEEeCCCCCceEEEEeCCcceeEEEc----cCCCEEEEE--cCCeEEEEECC-CcceE--Ee-eeccce--eEEEEE
Q psy6442 62 KTVRLWDVSASAEVQKLEFGAVPNSLEIS----RDGTTITVT--HGSCVTFLDAN-SLELI--KE-HKVPAQ--VHSASL 129 (231)
Q Consensus 62 ~ti~iwd~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~--~~~~i~~~d~~-~~~~~--~~-~~~~~~--~~~~~~ 129 (231)
+.|..+|.. ++..........+..++++ |++..++++ .++.+..|+.. +.... .. ...+.. .....+
T Consensus 153 ~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i 231 (314)
T 1pjx_A 153 GSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM 231 (314)
T ss_dssp EEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred CeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence 456666655 4443333333456889999 998766655 35788888865 22211 11 111110 112234
Q ss_pred EecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCC
Q psy6442 130 LLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTNV 196 (231)
Q Consensus 130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~~ 196 (231)
..++++.+.++...++.|..||..+++.+..+..+...+.+++|+|+++ ++++...++.|..|++..
T Consensus 232 ~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 232 DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 4578888888877788999999887776666666667899999999998 666667778999999864
No 205
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.99 E-value=9.7e-08 Score=85.38 Aligned_cols=181 Identities=13% Similarity=0.064 Sum_probs=115.1
Q ss_pred CceeeeccCCC----eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC------CC-c
Q psy6442 6 KPMLRQGDTGD----WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA------SA-E 74 (231)
Q Consensus 6 ~~~~~~~~~g~----~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~------~~-~ 74 (231)
+|++|+..+++ ++.....|...+..+.|+|+|+.++..+... ...+..|.+||+.+ +. .
T Consensus 209 ~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~----------~~~~~~l~~~d~~~~~~~~~~~~~ 278 (710)
T 2xdw_A 209 KLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG----------CDPVNRLWYCDLQQESNGITGILK 278 (710)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS----------SSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred EEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEcc----------CCCccEEEEEECcccccccCCccc
Confidence 38899988776 3333344667788999999977654321100 00156899999876 43 3
Q ss_pred eEEEEeCCcceeEEEccCCCEEEEE-cC----CeEEEEECCCcce--EEeeecc-c--eeEEEEEEecCCCCEEEEecCC
Q psy6442 75 VQKLEFGAVPNSLEISRDGTTITVT-HG----SCVTFLDANSLEL--IKEHKVP-A--QVHSASLLLNSERPIFVCGGED 144 (231)
Q Consensus 75 ~~~~~~~~~~~~v~~~~~~~~~~~~-~~----~~i~~~d~~~~~~--~~~~~~~-~--~~~~~~~~~~~~~~~~~~g~~d 144 (231)
...+..........++|++..+++. .. ..+..++..+... .+....+ . .+....+ .+++.++++...+
T Consensus 279 ~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 279 WVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVAC--VRSNFLVLCYLHD 356 (710)
T ss_dssp CEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEE--ETTTEEEEEEEET
T ss_pred eEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEE--EcCCEEEEEEEEC
Confidence 4444432222223578888876653 22 3688899876531 2222222 1 2333333 4567778888777
Q ss_pred C--eEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEE-Ee---eCCCcEEEEeCCCCC
Q psy6442 145 L--KMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYA-SG---SEDGTLRLWQTNVGK 198 (231)
Q Consensus 145 ~--~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~la-S~---s~d~~v~iwd~~~~~ 198 (231)
+ +|++|++.+++.++.+..+.+.|..++++|++..++ +. ...++|.+||+.+++
T Consensus 357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7 477788877777777877888899999999987554 32 346789999998887
No 206
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.98 E-value=5.6e-08 Score=79.38 Aligned_cols=162 Identities=10% Similarity=0.083 Sum_probs=102.5
Q ss_pred CCCEEEEeCCCCCceEEEEeC-------CcceeEEEccCCCEEEEE-----cCCeEEEEECCCcceEEeeec-----c--
Q psy6442 61 DKTVRLWDVSASAEVQKLEFG-------AVPNSLEISRDGTTITVT-----HGSCVTFLDANSLELIKEHKV-----P-- 121 (231)
Q Consensus 61 D~ti~iwd~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~-----~~~~i~~~d~~~~~~~~~~~~-----~-- 121 (231)
+..|.+||+.+++.+..+.++ ..+..+++++++..++++ ....+.+||..+.+..+.... +
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~ 171 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED 171 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence 578999999988877777653 235899999876666665 346888999876554443211 0
Q ss_pred ------c---------------eeEEEEEEecCCCCEEEEecCCC-eEEEEeCCC---cc-----eee--eccCCCCCee
Q psy6442 122 ------A---------------QVHSASLLLNSERPIFVCGGEDL-KMYKFDYST---GA-----EIE--SFKGHFGPIH 169 (231)
Q Consensus 122 ------~---------------~~~~~~~~~~~~~~~~~~g~~d~-~i~~~d~~~---~~-----~~~--~~~~h~~~V~ 169 (231)
. ......+.+++++..+..+...+ +++.++... +. ... ...++.+...
T Consensus 172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pd 251 (343)
T 2qe8_A 172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICD 251 (343)
T ss_dssp CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCS
T ss_pred cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCc
Confidence 0 01122344578887777665544 677766421 10 011 1124555677
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442 170 CVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL 222 (231)
Q Consensus 170 ~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (231)
.++++++|+++++...++.|.+||..+|+.....+.-....+..++++++|++
T Consensus 252 gia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l 304 (343)
T 2qe8_A 252 GISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYL 304 (343)
T ss_dssp CEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCE
T ss_pred eEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcE
Confidence 89999999999999999999999986676433333211334566677666653
No 207
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.98 E-value=4.5e-07 Score=71.49 Aligned_cols=181 Identities=10% Similarity=0.121 Sum_probs=116.3
Q ss_pred eecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe---CCcceeEEEccCCCEEE
Q psy6442 21 FEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTIT 97 (231)
Q Consensus 21 l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~ 97 (231)
+..+...+.++.+.++|+ .+++...++.|.+||.. ++. ..+.. ...+..+++.+++...+
T Consensus 10 ~~~~~~~~~~i~~d~~g~---------------l~v~~~~~~~v~~~d~~-~~~-~~~~~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGK---------------VWITQHKANMISCINLD-GKI-TEYPLPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp CCSSSCCEEEEEECTTSC---------------EEEEETTTTEEEEECTT-CCE-EEEECSSTTCCEEEEEECTTSCEEE
T ss_pred CCCcCCCccceEECCCCC---------------EEEEecCCCcEEEEcCC-CCe-EEecCCcccCceeeEEECCCCCEEE
Confidence 344556788898888754 34555557889999987 543 33332 24678999999998766
Q ss_pred EEc-CCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceee-eccCCCCCeeEEEEc
Q psy6442 98 VTH-GSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE-SFKGHFGPIHCVKFS 174 (231)
Q Consensus 98 ~~~-~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~-~~~~h~~~V~~v~~s 174 (231)
+.. ++.+..++... . ...+..+ .......+..++++.+.++...++.|..||. +++... .+..+...+..++++
T Consensus 73 ~~~~~~~i~~~~~~g-~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~ 149 (299)
T 2z2n_A 73 TENAANKIGRITKKG-I-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG 149 (299)
T ss_dssp EETTTTEEEEECTTS-C-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred eCCCCCeEEEECCCC-c-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc
Confidence 655 56888888752 2 2333322 1112223444778888887777889999998 544332 233345678999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442 175 PDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL 222 (231)
Q Consensus 175 pd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (231)
|+++++++...++.|..||. +++....-.......+..+.++.+|++
T Consensus 150 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l 196 (299)
T 2z2n_A 150 SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDAL 196 (299)
T ss_dssp TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE
T ss_pred CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCE
Confidence 99999988888899999998 666543211111223445566666553
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.98 E-value=9.9e-07 Score=69.53 Aligned_cols=165 Identities=8% Similarity=0.107 Sum_probs=103.8
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCceEEEEe---CCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeeccc-eeEE
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVPA-QVHS 126 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~-~~~~ 126 (231)
+..+++...++.|..+|.. ++.. .+.. ...+..+++.+++...+... .+.+..++. +..... +..+. ....
T Consensus 115 g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~ 190 (300)
T 2qc5_A 115 GDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAP 190 (300)
T ss_dssp TCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCE
T ss_pred CCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCc
Confidence 4445555557788889886 4433 2322 24678999999998554443 568888887 333332 22221 1112
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEeCCCcceee-eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442 127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE-SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~-~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~ 205 (231)
..+..++++.+.++....+.|..++. ++.... .+..+...+.+++++|+|+++++...++.|..|+. +++.. .+..
T Consensus 191 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~ 267 (300)
T 2qc5_A 191 VGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQL 267 (300)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEEC
T ss_pred ceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEEC
Confidence 23444778887777767788999998 444332 23445567899999999998888877899999998 45433 2321
Q ss_pred c-CCcccCCCCCCcccccc
Q psy6442 206 I-EGGLNNSLGLDSSGHLN 223 (231)
Q Consensus 206 ~-~~~~~~~~~~~~~~~~~ 223 (231)
- ....+..|.++.+|+++
T Consensus 268 ~~~~~~~~~i~~~~~g~l~ 286 (300)
T 2qc5_A 268 QTENAEPHGITFGKDGSVW 286 (300)
T ss_dssp CSTTCCCCCEEECTTSCEE
T ss_pred CccCCccceeEeCCCCCEE
Confidence 1 22345666677666643
No 209
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.96 E-value=4.6e-08 Score=87.29 Aligned_cols=178 Identities=12% Similarity=-0.027 Sum_probs=110.3
Q ss_pred ceeeeccCCC----eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCC----CEEEEeCCCCCceEEE
Q psy6442 7 PMLRQGDTGD----WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDK----TVRLWDVSASAEVQKL 78 (231)
Q Consensus 7 ~~~~~~~~g~----~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~----ti~iwd~~~~~~~~~~ 78 (231)
|++|+..+++ ++....+|...+..+.|+|+|+.+ +..+.++ .|.+|+..++......
T Consensus 204 v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l---------------~~~~~~~~~~~~l~~~~~~~~~~~~l~ 268 (695)
T 2bkl_A 204 IRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYL---------------FVYILRGWSENDVYWKRPGEKDFRLLV 268 (695)
T ss_dssp EEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCE---------------EEEEEETTTEEEEEEECTTCSSCEEEE
T ss_pred EEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEE---------------EEEEeCCCCceEEEEEcCCCCceEEee
Confidence 8999988776 555556677789999999987654 3333333 5666766555443333
Q ss_pred EeCCcceeEEEccCCCEEEEEc----CCeEEEEECCCcce--EEe-eec--cceeEEEEEEecCCCCEEEEecCCCeEEE
Q psy6442 79 EFGAVPNSLEISRDGTTITVTH----GSCVTFLDANSLEL--IKE-HKV--PAQVHSASLLLNSERPIFVCGGEDLKMYK 149 (231)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~----~~~i~~~d~~~~~~--~~~-~~~--~~~~~~~~~~~~~~~~~~~~g~~d~~i~~ 149 (231)
..........+ +++..++.+. ...|..||..+... ... ... ...+....+ . ++.++++...++..++
T Consensus 269 ~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~--~-~~~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSI--V-GGHLSLEYLKDATSEV 344 (695)
T ss_dssp ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEE--E-TTEEEEEEEETTEEEE
T ss_pred cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEE--E-CCEEEEEEEECCEEEE
Confidence 33334444445 5666333333 35788899866532 122 211 122333333 4 5667888888887666
Q ss_pred EeCC-CcceeeeccCC-CCCeeEEEEcCCCCEEE----EeeCCCcEEEEeCCCCCeeeeee
Q psy6442 150 FDYS-TGAEIESFKGH-FGPIHCVKFSPDGELYA----SGSEDGTLRLWQTNVGKTYGLWK 204 (231)
Q Consensus 150 ~d~~-~~~~~~~~~~h-~~~V~~v~~spd~~~la----S~s~d~~v~iwd~~~~~~~~~~~ 204 (231)
|... .+..+..+..+ .+.|..++++|++..++ +....++|.+||+.+++. .+++
T Consensus 345 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~-~~l~ 404 (695)
T 2bkl_A 345 RVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS-ELWA 404 (695)
T ss_dssp EEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE-EEEE
T ss_pred EEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE-EEEe
Confidence 5443 35556666555 67788899999997666 444568899999998874 3444
No 210
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.95 E-value=2.7e-07 Score=71.47 Aligned_cols=168 Identities=15% Similarity=0.080 Sum_probs=120.7
Q ss_pred CeEeeeeccccc--EEEEEECCCCceeEeccccccccCCCEEEEEeCCC--CEEEEeCCCCCceEEEEeCCcceeEEEcc
Q psy6442 16 DWIGTFEGHKGC--VWGVDINKDASKAASGAADFQAKNNTRLISCAEDK--TVRLWDVSASAEVQKLEFGAVPNSLEISR 91 (231)
Q Consensus 16 ~~i~~l~gH~~~--V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~--ti~iwd~~~~~~~~~~~~~~~~~~v~~~~ 91 (231)
+.++++ .|... +..+.|++ +..+.|.+.+| +|+..|+.+++.+..+.++..+....+.+
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~----------------~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~ 72 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR----------------GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA 72 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET----------------TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE
T ss_pred EEEEEc-CCCCccccccEEEEC----------------CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE
Confidence 456666 56543 44666654 22356666654 89999999999999998887776666666
Q ss_pred CCCEEEEEc--CCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccC--CC--
Q psy6442 92 DGTTITVTH--GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG--HF-- 165 (231)
Q Consensus 92 ~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~--h~-- 165 (231)
.+..+++.. ++.+.++|..+.+.+.++..+..-..++ +++..+.....+.+|+++|..+.+.+.+++- +.
T Consensus 73 ~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt----~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~ 148 (243)
T 3mbr_X 73 WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT----SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRP 148 (243)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE----ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe----eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcc
Confidence 667666553 6899999999999999887765332222 2344455555688999999999887776543 21
Q ss_pred -CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442 166 -GPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 166 -~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~ 205 (231)
..++.+.+. +|++++..-.+..|.+-|..+|+....+..
T Consensus 149 ~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl 188 (243)
T 3mbr_X 149 LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDL 188 (243)
T ss_dssp CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEEC
T ss_pred cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 345667765 777887777788999999999999888763
No 211
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.94 E-value=9.5e-08 Score=74.82 Aligned_cols=148 Identities=9% Similarity=-0.008 Sum_probs=112.2
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE--cCCeEEEEECCCcceEEeeeccceeEEEEE
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDANSLELIKEHKVPAQVHSASL 129 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 129 (231)
+..+.+.+.++.|+++|+.+++.+..+ ++..+....+.+++..+++. .++.+.++|..+.+.++++..+.....++
T Consensus 65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt- 142 (268)
T 3nok_A 65 GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC- 142 (268)
T ss_dssp TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE-
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe-
Confidence 445778888899999999999999998 87777665555566666554 37899999999999999887754322222
Q ss_pred EecCCCCEEEEecCCCeEEEEeCCCcceeeeccC--CC---CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442 130 LLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG--HF---GPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK 204 (231)
Q Consensus 130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~--h~---~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~ 204 (231)
+++..++....+.+|+.+|..+.+.+.+++- +. ..++.+.|. +|++++..-.++.|.+-|..+|+....++
T Consensus 143 ---~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Id 218 (268)
T 3nok_A 143 ---YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVID 218 (268)
T ss_dssp ---EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred ---cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence 3455566666688999999999887776542 22 245677887 78888877788999999999999988776
Q ss_pred c
Q psy6442 205 C 205 (231)
Q Consensus 205 ~ 205 (231)
.
T Consensus 219 l 219 (268)
T 3nok_A 219 A 219 (268)
T ss_dssp C
T ss_pred C
Confidence 4
No 212
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.93 E-value=3.9e-07 Score=71.75 Aligned_cols=171 Identities=12% Similarity=0.079 Sum_probs=120.9
Q ss_pred CCCeEeeeeccccc--EEEEEECCCCceeEeccccccccCCCEEEEEeC--CCCEEEEeCCCCCceEEEEeCCcceeEEE
Q psy6442 14 TGDWIGTFEGHKGC--VWGVDINKDASKAASGAADFQAKNNTRLISCAE--DKTVRLWDVSASAEVQKLEFGAVPNSLEI 89 (231)
Q Consensus 14 ~g~~i~~l~gH~~~--V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~--D~ti~iwd~~~~~~~~~~~~~~~~~~v~~ 89 (231)
+.+.++++. |... ...+.|++++. .+++.+. +++|.+.|+.+++.+..+..+..+....+
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~---------------Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi 71 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDT---------------LFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGL 71 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTE---------------EEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEE
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCe---------------EEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEE
Confidence 355677764 5543 56888887632 2344443 57999999999999998887665554445
Q ss_pred ccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccC--C
Q psy6442 90 SRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG--H 164 (231)
Q Consensus 90 ~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~--h 164 (231)
..++..+++.. ++.+.++|..+.+.+.++..+ ..- ..+ .+++..+..+..+.+++++|..+.+.+..+.- +
T Consensus 72 ~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g--~gl--t~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~ 147 (266)
T 2iwa_A 72 TLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDG--WGL--ATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN 147 (266)
T ss_dssp EEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSC--CEE--EECSSSEEEECSSSEEEEECTTTCCEEEEEECEET
T ss_pred EEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCe--EEE--EECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC
Confidence 55566666653 679999999999888887654 222 222 33455455555688999999998887766542 1
Q ss_pred ---CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442 165 ---FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 165 ---~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~ 205 (231)
...++.+.|. ++.++++...++.|.+-|..+++..+.+..
T Consensus 148 ~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~ 190 (266)
T 2iwa_A 148 GHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILL 190 (266)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred CcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence 1246788888 787888877889999999999999888764
No 213
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.91 E-value=1.8e-07 Score=73.11 Aligned_cols=149 Identities=12% Similarity=0.118 Sum_probs=112.5
Q ss_pred CCEEEEEeCCC--CEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeeccceeEEE
Q psy6442 52 NTRLISCAEDK--TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVPAQVHSA 127 (231)
Q Consensus 52 ~~~l~s~s~D~--ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~ 127 (231)
+..+.+.+.+| +|+++|+.+++.+..+.++..+....+.+++..+++.. ++.+.++|..+.+.++++..+..-..+
T Consensus 53 ~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~gl 132 (262)
T 3nol_A 53 GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGL 132 (262)
T ss_dssp TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCE
T ss_pred CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEE
Confidence 34466777776 89999999999999998887776665666667776654 679999999999999988775432222
Q ss_pred EEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCC--C---CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGH--F---GPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL 202 (231)
Q Consensus 128 ~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h--~---~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~ 202 (231)
+ +++..+.....+.+|+.+|..+.+.+.+++-. . ..++.+.|. +|++++..-.++.|.+.|..+|+....
T Consensus 133 t----~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~ 207 (262)
T 3nol_A 133 T----HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGI 207 (262)
T ss_dssp E----ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEE
T ss_pred e----cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEE
Confidence 2 34555555556788999999988877765421 1 335668886 788888887899999999999999888
Q ss_pred eec
Q psy6442 203 WKC 205 (231)
Q Consensus 203 ~~~ 205 (231)
++.
T Consensus 208 Id~ 210 (262)
T 3nol_A 208 IDL 210 (262)
T ss_dssp EEC
T ss_pred EEC
Confidence 765
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.88 E-value=1.2e-06 Score=70.97 Aligned_cols=176 Identities=13% Similarity=0.108 Sum_probs=103.3
Q ss_pred CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC---
Q psy6442 5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG--- 81 (231)
Q Consensus 5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~--- 81 (231)
+.|..|+..+++.. .+. +...+.++.++++++ .+++ ..+ .|.+||..+++........
T Consensus 71 ~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~---------------l~v~-~~~-gl~~~d~~~g~~~~~~~~~~~~ 131 (326)
T 2ghs_A 71 RELHELHLASGRKT-VHA-LPFMGSALAKISDSK---------------QLIA-SDD-GLFLRDTATGVLTLHAELESDL 131 (326)
T ss_dssp TEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTE---------------EEEE-ETT-EEEEEETTTCCEEEEECSSTTC
T ss_pred CEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCe---------------EEEE-ECC-CEEEEECCCCcEEEEeeCCCCC
Confidence 44555555444322 222 234566666665543 3343 333 4889998877654332221
Q ss_pred --CcceeEEEccCCCEEEEEcC-------CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEE-EecCCCeEEEEe
Q psy6442 82 --AVPNSLEISRDGTTITVTHG-------SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFV-CGGEDLKMYKFD 151 (231)
Q Consensus 82 --~~~~~v~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~d~~i~~~d 151 (231)
..++.++++|+++..+...+ +.+..++ +.+............ .+.+++++..+. +...++.|++|+
T Consensus 132 ~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~--~i~~s~dg~~lyv~~~~~~~I~~~d 207 (326)
T 2ghs_A 132 PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPN--SICFSPDGTTGYFVDTKVNRLMRVP 207 (326)
T ss_dssp TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEE--EEEECTTSCEEEEEETTTCEEEEEE
T ss_pred CCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccC--CeEEcCCCCEEEEEECCCCEEEEEE
Confidence 24678999999986554421 3555566 332222111111122 233478887554 445578899999
Q ss_pred CC--Cc-c-----eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442 152 YS--TG-A-----EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK 204 (231)
Q Consensus 152 ~~--~~-~-----~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~ 204 (231)
.. ++ . ....+......+..++++++|+++++...++.|.+|+. +++....+.
T Consensus 208 ~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~ 267 (326)
T 2ghs_A 208 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE 267 (326)
T ss_dssp BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred cccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE
Confidence 75 55 3 12233334456788999999998888877888999998 577665554
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.88 E-value=7.2e-07 Score=71.40 Aligned_cols=185 Identities=15% Similarity=0.142 Sum_probs=111.9
Q ss_pred EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEE
Q psy6442 18 IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTIT 97 (231)
Q Consensus 18 i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 97 (231)
+..+..+........|+++++. .+++...++.|..|+. +++..........+..++++++++.++
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~--------------l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~v 101 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRT--------------LVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLVH 101 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTE--------------EEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSCEEE
T ss_pred eEEEecCCcCccCCeEeCCCCE--------------EEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCCEEE
Confidence 3444444455566777776543 3567777889999998 444322223345678999999999766
Q ss_pred EEcC-CeEEEEECCCcceEEeee-cc-c---eeEEEEEEecCCCCEEEE----ecC-------------CCeEEEEeCCC
Q psy6442 98 VTHG-SCVTFLDANSLELIKEHK-VP-A---QVHSASLLLNSERPIFVC----GGE-------------DLKMYKFDYST 154 (231)
Q Consensus 98 ~~~~-~~i~~~d~~~~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~----g~~-------------d~~i~~~d~~~ 154 (231)
+... +.+..++.. ........ .. . .+.. +..++++.+.++ |.. .+.|+.+|..+
T Consensus 102 ~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~--i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 102 CEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPND--LIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp EETTTTEEEEECTT-SCEEEEECEETTEECSCCCC--EEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred EECCCCEEEEECCC-CCEEEEEeccCCCccCCCCC--EEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 6554 688888875 33221111 11 1 1122 334788887775 331 35688888866
Q ss_pred cceeeeccCCCCCeeEEEEcCCCCEEEEeeCC------CcEEEEeCCCCCe--eeeeeccCCcccCCCCCCccccc
Q psy6442 155 GAEIESFKGHFGPIHCVKFSPDGELYASGSED------GTLRLWQTNVGKT--YGLWKCIEGGLNNSLGLDSSGHL 222 (231)
Q Consensus 155 ~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d------~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 222 (231)
++..... .....+.++|+||++.|..+... +.|.+|++..+.. ...+.......+.-+.++.+|++
T Consensus 179 g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l 252 (305)
T 3dr2_A 179 SPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL 252 (305)
T ss_dssp CCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE
T ss_pred CcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE
Confidence 6543322 34567889999999866665544 7899999875431 12232223445556667766654
No 216
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.87 E-value=1.7e-07 Score=84.17 Aligned_cols=210 Identities=11% Similarity=0.004 Sum_probs=115.8
Q ss_pred CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE--EeCC
Q psy6442 5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL--EFGA 82 (231)
Q Consensus 5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~--~~~~ 82 (231)
.++++|+..+|+.+.. ..+...+..+.|+|| +.++.+..+.... +..+........|++|++.++.....+ ....
T Consensus 189 ~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~-~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~ 265 (741)
T 1yr2_A 189 RTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKE-GQAFQALNYNQTVWLHRLGTPQSADQPVFATPE 265 (741)
T ss_dssp EEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC---------CCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred EEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccc-ccccccCCCCCEEEEEECCCCchhCEEEeccCC
Confidence 4689999998887653 222233357789998 7765544322110 001111112345889999876542222 2221
Q ss_pred ---cceeEEEccCCCEEEEEc------CCeEEEEECCCc--ceEEeeeccceeEEEEEEecCCCCEEEEecC----CCeE
Q psy6442 83 ---VPNSLEISRDGTTITVTH------GSCVTFLDANSL--ELIKEHKVPAQVHSASLLLNSERPIFVCGGE----DLKM 147 (231)
Q Consensus 83 ---~~~~v~~~~~~~~~~~~~------~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----d~~i 147 (231)
....+.++||++.++... ...+.++|..+. ........+.......+ .+++..++..+. ...|
T Consensus 266 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~--~~dg~~l~~~s~~~~~~~~l 343 (741)
T 1yr2_A 266 LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV--DGVGDQLWFVSGDGAPLKKI 343 (741)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE--EEETTEEEEEECTTCTTCEE
T ss_pred CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE--eccCCEEEEEECCCCCCCEE
Confidence 367889999999766532 237888887654 21222222221111122 245665555443 4569
Q ss_pred EEEeCCCc--ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC-CCCeeeeeeccCCcccCCCCCCccc
Q psy6442 148 YKFDYSTG--AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN-VGKTYGLWKCIEGGLNNSLGLDSSG 220 (231)
Q Consensus 148 ~~~d~~~~--~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (231)
+.||+.++ .....+..+...+.+++++ ++.++++...|+..+||... .++.......-.......+++++++
T Consensus 344 ~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~ 418 (741)
T 1yr2_A 344 VRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGD 418 (741)
T ss_dssp EEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTC
T ss_pred EEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCC
Confidence 99998774 2233344555567778887 56788999999988888654 4544333332112333344444444
No 217
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.83 E-value=8.5e-10 Score=91.36 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=79.0
Q ss_pred CCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccce-eEEEE
Q psy6442 51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQ-VHSAS 128 (231)
Q Consensus 51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~ 128 (231)
++..|++++.|+.|+.||..+++.+..... ..+.+..+..++..+++ +.++.+..||..+.+.+.......+ .....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 467899999999999999999999877776 44444445566655555 4678899999877766544332211 00000
Q ss_pred EEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442 129 LLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL 202 (231)
Q Consensus 129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~ 202 (231)
.... .+..+++++.++.++.||..+|+.+..+..+. ...++|++..+++++.|+.|+.||.++|+....
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN 155 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence 0001 23356677889999999999999888876554 245678888999999999999999999986433
No 218
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.81 E-value=2.6e-07 Score=76.77 Aligned_cols=136 Identities=12% Similarity=0.081 Sum_probs=96.5
Q ss_pred cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEEcC
Q psy6442 23 GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTHG 101 (231)
Q Consensus 23 gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~ 101 (231)
.+.+ |..+.| + +..|+++ .++.|++||+.+........ +...+.++.+.+.. .+++..+
T Consensus 86 ~lp~-V~~l~f--d---------------~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~d 145 (388)
T 1xip_A 86 EIPD-VIFVCF--H---------------GDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSV 145 (388)
T ss_dssp ECTT-EEEEEE--E---------------TTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE-EEEEETT
T ss_pred eCCC-eeEEEE--C---------------CCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC-EEEEECC
Confidence 4566 888888 4 3456777 88999999998776544443 34456676666543 5556788
Q ss_pred CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce--eeec------c---CCCCCeeE
Q psy6442 102 SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE--IESF------K---GHFGPIHC 170 (231)
Q Consensus 102 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~--~~~~------~---~h~~~V~~ 170 (231)
+.+.+||+.+..... ....+.+++| +|++ ++.|..|+++++|+....+. ..++ . +|...|.+
T Consensus 146 G~L~v~dl~~~~~~~---~~~~Vs~v~W--SpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~s 218 (388)
T 1xip_A 146 NDLSALDLRTKSTKQ---LAQNVTSFDV--TNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLS 218 (388)
T ss_dssp SEEEEEETTTCCEEE---EEESEEEEEE--CSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEE
T ss_pred CCEEEEEccCCcccc---ccCCceEEEE--cCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEE
Confidence 999999998766543 2234555555 8888 67788899999997766553 3444 2 47888999
Q ss_pred EEEcCCCCEEEEeeC
Q psy6442 171 VKFSPDGELYASGSE 185 (231)
Q Consensus 171 v~~spd~~~laS~s~ 185 (231)
|.|.+++.++++-..
T Consensus 219 I~wl~~~~flv~y~~ 233 (388)
T 1xip_A 219 VTILSPQDFLAVFGN 233 (388)
T ss_dssp EEESSSSEEEEEEEC
T ss_pred EEEecCCeEEEEEcC
Confidence 999999999888543
No 219
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.79 E-value=6.7e-07 Score=80.40 Aligned_cols=163 Identities=9% Similarity=-0.021 Sum_probs=97.1
Q ss_pred cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE-cC
Q psy6442 23 GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HG 101 (231)
Q Consensus 23 gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~ 101 (231)
+|...+..+.|+|||++++.+..+. ++...+|++||+.+++.+...........++|+|| +.++.+ .+
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~----------G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~ 228 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDG----------GSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFA 228 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEET----------TCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECC
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCC----------CCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEec
Confidence 3444678889999977654322100 00014699999999887543221222357899999 876654 32
Q ss_pred C--------------eEEEEECCCcce--EEeeeccc-eeEEEEEEecCCCCEEEEecCC-----CeEEEEeCCCcc-e-
Q psy6442 102 S--------------CVTFLDANSLEL--IKEHKVPA-QVHSASLLLNSERPIFVCGGED-----LKMYKFDYSTGA-E- 157 (231)
Q Consensus 102 ~--------------~i~~~d~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d-----~~i~~~d~~~~~-~- 157 (231)
. .+.+|+..+... ...+..+. +.......++++++.++....+ ..|++||+.++. .
T Consensus 229 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 308 (741)
T 1yr2_A 229 EPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGP 308 (741)
T ss_dssp CC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECC
T ss_pred CcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcc
Confidence 2 377888765442 12222221 1112334458999887766543 489999987762 2
Q ss_pred eeeccCCCCCeeEEEEcCCCCEEEEeeCC----CcEEEEeCCCC
Q psy6442 158 IESFKGHFGPIHCVKFSPDGELYASGSED----GTLRLWQTNVG 197 (231)
Q Consensus 158 ~~~~~~h~~~V~~v~~spd~~~laS~s~d----~~v~iwd~~~~ 197 (231)
...+..+...+... ++|+|..|+..+.+ +.|.+||+.++
T Consensus 309 ~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 309 VTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred cEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 44555555555554 35899888777754 44999998875
No 220
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.78 E-value=1.8e-06 Score=68.80 Aligned_cols=167 Identities=14% Similarity=0.140 Sum_probs=103.7
Q ss_pred CEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecc---ceeEEEEE
Q psy6442 53 TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVP---AQVHSASL 129 (231)
Q Consensus 53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~ 129 (231)
..+++...+++|..||..+++. ..+.....+..+++++++..++ +....+..+|..+.+........ .......+
T Consensus 26 ~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v-~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di 103 (297)
T 3g4e_A 26 SLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVA-TIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDG 103 (297)
T ss_dssp EEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEE-EETTEEEEEETTTTEEEEEEECCTTCSSEEEEEE
T ss_pred EEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEE-EECCeEEEEECCCCcEEEEEecCCCCCCCCCCCE
Confidence 3466667788999999987664 4556677889999999999544 44678889998765543222211 11122234
Q ss_pred EecCCCCEEEEec-----------CCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeC--C
Q psy6442 130 LLNSERPIFVCGG-----------EDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELY-ASGSEDGTLRLWQT--N 195 (231)
Q Consensus 130 ~~~~~~~~~~~g~-----------~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~l-aS~s~d~~v~iwd~--~ 195 (231)
..++++.+.++.. ..+.|+.++.. +.. ..+..+....+.++|+||++.| ++.+.++.|.+|++ .
T Consensus 104 ~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~-~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~ 181 (297)
T 3g4e_A 104 KVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHV-KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQ 181 (297)
T ss_dssp EECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCE-EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTT
T ss_pred EECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCE-EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCC
Confidence 4488888766542 23466667653 332 2223344557899999999854 66677899999986 5
Q ss_pred CCCee--eeeeccC--CcccCCCCCCcccccc
Q psy6442 196 VGKTY--GLWKCIE--GGLNNSLGLDSSGHLN 223 (231)
Q Consensus 196 ~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~ 223 (231)
+|+.. ..+.... +..+.-+.++.+|++|
T Consensus 182 ~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lw 213 (297)
T 3g4e_A 182 TGQISNRRSVYKLEKEEQIPDGMCIDAEGKLW 213 (297)
T ss_dssp TCCEEEEEEEEECCGGGCEEEEEEEBTTSCEE
T ss_pred CCcccCcEEEEECCCCCCCCCeeEECCCCCEE
Confidence 66532 2222211 2344556677776554
No 221
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.75 E-value=1.8e-06 Score=72.38 Aligned_cols=142 Identities=13% Similarity=0.060 Sum_probs=90.4
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcC-C--eEEEEECCCcceEEee----e-ccce
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG-S--CVTFLDANSLELIKEH----K-VPAQ 123 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~--~i~~~d~~~~~~~~~~----~-~~~~ 123 (231)
+..+++...++.|++||..++...........+. +++++++..+++... + .+..++.......+.. . ....
T Consensus 142 g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~ 220 (409)
T 3hrp_A 142 NTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGK 220 (409)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSC
T ss_pred CCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCC
Confidence 3345555567899999998776654444444455 999999998877653 3 7888887654433222 1 1112
Q ss_pred eEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeee----ccCCCCCe--eEEEEcC-CCCEEEEeeCCCcEEEEeCCC
Q psy6442 124 VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES----FKGHFGPI--HCVKFSP-DGELYASGSEDGTLRLWQTNV 196 (231)
Q Consensus 124 ~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~----~~~h~~~V--~~v~~sp-d~~~laS~s~d~~v~iwd~~~ 196 (231)
...+ ..+++...+.....+++|+.||..++..... ..++...- +.++|+| ++.++++-..++.|+.|+...
T Consensus 221 p~~i--av~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g 298 (409)
T 3hrp_A 221 IGAV--ALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG 298 (409)
T ss_dssp CCBC--EECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred cEEE--EEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence 2333 3377333444466688999999876653221 22333222 3999999 577888888899999999754
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.75 E-value=9.6e-07 Score=78.83 Aligned_cols=188 Identities=7% Similarity=0.007 Sum_probs=104.4
Q ss_pred CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE--eC
Q psy6442 4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE--FG 81 (231)
Q Consensus 4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~--~~ 81 (231)
..+|++++..+|+.+.. .-+..+...+.|+ |++.++....+.. .+..+........|++|++.+......+. ..
T Consensus 154 ~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~--~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~ 229 (693)
T 3iuj_A 154 WREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKP--DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAI 229 (693)
T ss_dssp EEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCC--C-------CCCCEEEEEETTSCGGGCEEEESCS
T ss_pred eEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCc--ccccccccCCCcEEEEEECCCCcccceEEEecC
Confidence 35788899888886543 1111112456788 7665544433211 00111111122459999998765432222 22
Q ss_pred C----cceeEEEccCCCEEEEEc-----CCeEEEEECCCcc-eEEeeeccceeEEEEEEecCCCCEEEEecC---CCeEE
Q psy6442 82 A----VPNSLEISRDGTTITVTH-----GSCVTFLDANSLE-LIKEHKVPAQVHSASLLLNSERPIFVCGGE---DLKMY 148 (231)
Q Consensus 82 ~----~~~~v~~~~~~~~~~~~~-----~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---d~~i~ 148 (231)
. ....+.++||++.+++.. .+.+.++|..+.. .......+.......+. +.++.+++.... ..+|+
T Consensus 230 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~-~~g~~l~~~t~~~~~~~~l~ 308 (693)
T 3iuj_A 230 PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVD-NKGSTLYLLTNRDAPNRRLV 308 (693)
T ss_dssp GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEE
T ss_pred CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEe-ccCCEEEEEECCCCCCCEEE
Confidence 2 246789999999876532 2478889976553 22232222221111121 223444444443 36899
Q ss_pred EEeCCCcce--eeeccCCCCCeeEEEEcCCCCEEEEeeCCC---cEEEEeCCCCC
Q psy6442 149 KFDYSTGAE--IESFKGHFGPIHCVKFSPDGELYASGSEDG---TLRLWQTNVGK 198 (231)
Q Consensus 149 ~~d~~~~~~--~~~~~~h~~~V~~v~~spd~~~laS~s~d~---~v~iwd~~~~~ 198 (231)
.+|+.++.. ...+..|...+. .|+|+++.|+....++ .|++|++..+.
T Consensus 309 ~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 309 TVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp EEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred EEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe
Confidence 999977643 345555666555 8999998877766544 68899987543
No 223
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.72 E-value=2.3e-06 Score=70.82 Aligned_cols=132 Identities=13% Similarity=0.140 Sum_probs=98.7
Q ss_pred CEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc-----------CCeEEEEECCCcceEEeeecc-c-e----eE
Q psy6442 63 TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH-----------GSCVTFLDANSLELIKEHKVP-A-Q----VH 125 (231)
Q Consensus 63 ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----------~~~i~~~d~~~~~~~~~~~~~-~-~----~~ 125 (231)
+|.++|..+++.+..+..+..+ .++++||++.++++. ++.+.++|..+.+.+.....+ . . ..
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~ 126 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY 126 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCC
Confidence 8899999999888888777667 999999999998874 467899999888777766543 0 0 11
Q ss_pred EEEEEecCCCCEEEEecC--CCeEEEEeCCCcceeee-ccCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCeee
Q psy6442 126 SASLLLNSERPIFVCGGE--DLKMYKFDYSTGAEIES-FKGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVGKTYG 201 (231)
Q Consensus 126 ~~~~~~~~~~~~~~~g~~--d~~i~~~d~~~~~~~~~-~~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~~~~~ 201 (231)
...+.++|+++.++.++. +..|.++| .+++.+.+ +..- . ++.+.|++ +.+++.+.||.+.+++. +++...
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence 123445899998888764 47899999 99888777 5421 1 24566765 56777889999999999 887663
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.71 E-value=2.8e-06 Score=68.72 Aligned_cols=166 Identities=12% Similarity=0.089 Sum_probs=101.8
Q ss_pred CEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecc--c-eeEEEEE
Q psy6442 53 TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVP--A-QVHSASL 129 (231)
Q Consensus 53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~-~~~~~~~ 129 (231)
..+++...++.|..||..+++. ..+.....+..+++++++..++.. ...+..+|..+.+.......+ . ......+
T Consensus 62 ~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i 139 (326)
T 2ghs_A 62 TAWWFNILERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDG 139 (326)
T ss_dssp EEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEE
T ss_pred EEEEEECCCCEEEEEECCCCcE-EEEECCCcceEEEEeCCCeEEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCE
Confidence 3466666788999999987654 344556678899999999876665 445888998766543222211 1 1122234
Q ss_pred EecCCCCEEEEecC------CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeCC--CC-Ce
Q psy6442 130 LLNSERPIFVCGGE------DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELY-ASGSEDGTLRLWQTN--VG-KT 199 (231)
Q Consensus 130 ~~~~~~~~~~~g~~------d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~l-aS~s~d~~v~iwd~~--~~-~~ 199 (231)
..++++.+.++... .+.|+.++ +++. ..+..+....+.++|+||++.| ++.+.++.|.+|++. +| +.
T Consensus 140 ~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~ 216 (326)
T 2ghs_A 140 RMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT 216 (326)
T ss_dssp EECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS
T ss_pred EECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcc
Confidence 45788887665432 35677777 4443 2332334467899999999855 555667899999985 56 32
Q ss_pred e--eeeecc--CCcccCCCCCCcccccc
Q psy6442 200 Y--GLWKCI--EGGLNNSLGLDSSGHLN 223 (231)
Q Consensus 200 ~--~~~~~~--~~~~~~~~~~~~~~~~~ 223 (231)
. ..+... ....+..+.++.+|+.|
T Consensus 217 ~~~~~~~~~~~~~~~p~gi~~d~~G~lw 244 (326)
T 2ghs_A 217 GKAEVFIDSTGIKGGMDGSVCDAEGHIW 244 (326)
T ss_dssp SCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred cCceEEEECCCCCCCCCeeEECCCCCEE
Confidence 1 122211 12344456666666543
No 225
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.70 E-value=1.1e-06 Score=72.85 Aligned_cols=146 Identities=14% Similarity=0.086 Sum_probs=106.0
Q ss_pred CCCEEEEEeC-----CCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc-----------CCeEEEEECCCcce
Q psy6442 51 NNTRLISCAE-----DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH-----------GSCVTFLDANSLEL 114 (231)
Q Consensus 51 ~~~~l~s~s~-----D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----------~~~i~~~d~~~~~~ 114 (231)
++.+++.+.. +++|.+.|..+++.+..+..+..+. ++++||++.++++. ++.+.+||..+.+.
T Consensus 43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v 121 (386)
T 3sjl_D 43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP 121 (386)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeE
Confidence 4555665554 6799999999999999998877775 99999999888764 35799999999988
Q ss_pred EEeeeccc-e-----eEEEEEEecCCCCEEEEecC--CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCC
Q psy6442 115 IKEHKVPA-Q-----VHSASLLLNSERPIFVCGGE--DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSED 186 (231)
Q Consensus 115 ~~~~~~~~-~-----~~~~~~~~~~~~~~~~~g~~--d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d 186 (231)
+.++..+. + .....+.++++++.+..++. +..|.++|+.+++.+.++.--. . ...+....+.+++.+.|
T Consensus 122 ~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~D 198 (386)
T 3sjl_D 122 TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRD 198 (386)
T ss_dssp EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETT
T ss_pred EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCC
Confidence 88775532 0 01112344889998877763 6789999999999888774211 1 22333345677788889
Q ss_pred CcEEEEeCCC-CCee
Q psy6442 187 GTLRLWQTNV-GKTY 200 (231)
Q Consensus 187 ~~v~iwd~~~-~~~~ 200 (231)
|.+-+.++.. ++..
T Consensus 199 G~~~~v~~~~~g~v~ 213 (386)
T 3sjl_D 199 GSLAKVAFGTEGTPE 213 (386)
T ss_dssp SCEEEEECCSSSCCE
T ss_pred CCEEEEECCCCCeEE
Confidence 9998888876 6653
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.69 E-value=2e-06 Score=76.84 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=48.8
Q ss_pred CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442 144 DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 144 d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~ 205 (231)
++.|+.||+.+++.+.+++.+ .++..-.++..+.++..++.|+.++.||.++|+.....+.
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceeEEEEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 377999999999988877644 3445556777888999999999999999999997655554
No 227
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.68 E-value=5.3e-06 Score=69.75 Aligned_cols=142 Identities=13% Similarity=0.105 Sum_probs=97.2
Q ss_pred EEEEEeCC------CCEEEEeCCCCCceEEEEeC----CcceeEEEccCCCEEEEEc--------------------CCe
Q psy6442 54 RLISCAED------KTVRLWDVSASAEVQKLEFG----AVPNSLEISRDGTTITVTH--------------------GSC 103 (231)
Q Consensus 54 ~l~s~s~D------~ti~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~--------------------~~~ 103 (231)
.++++..+ +.|.+.|..+++.+.++..+ ...+.+.++|+++.++++. ++.
T Consensus 150 i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~ 229 (462)
T 2ece_A 150 IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNR 229 (462)
T ss_dssp EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCE
T ss_pred EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCE
Confidence 45555554 78999999999988887654 2345788999999888874 679
Q ss_pred EEEEECCCcceEEeeecc---ceeEEEEEEecCCCCEEEEecC------CCeEEEEeCCCcce--eee-------ccC--
Q psy6442 104 VTFLDANSLELIKEHKVP---AQVHSASLLLNSERPIFVCGGE------DLKMYKFDYSTGAE--IES-------FKG-- 163 (231)
Q Consensus 104 i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~------d~~i~~~d~~~~~~--~~~-------~~~-- 163 (231)
|.+||..+.+.++++... .....+.+.++|+++.+..+++ +.+|.+|....+.. ++. ..+
T Consensus 230 V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~l 309 (462)
T 2ece_A 230 IHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNL 309 (462)
T ss_dssp EEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSC
T ss_pred EEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccc
Confidence 999999988777777764 1222334556899988776664 45776654433321 111 000
Q ss_pred ---------CCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeCC
Q psy6442 164 ---------HFGPIHCVKFSPDGELY-ASGSEDGTLRLWQTN 195 (231)
Q Consensus 164 ---------h~~~V~~v~~spd~~~l-aS~s~d~~v~iwd~~ 195 (231)
-...+..+.+||||++| +|.-..+.|.+||+.
T Consensus 310 p~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 310 PEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred cccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 02347889999999865 555568899999986
No 228
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.67 E-value=4e-06 Score=65.66 Aligned_cols=161 Identities=10% Similarity=0.134 Sum_probs=106.0
Q ss_pred CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG 81 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~ 81 (231)
+.+|+|+..|..+|+.++++ -. ...+.....+++ +...+..-.++.+.++|..+.+.+.++...
T Consensus 72 G~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g--------------~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~ 135 (268)
T 3nok_A 72 GHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG--------------ERLYQLTWTEGLLFTWSGMPPQRERTTRYS 135 (268)
T ss_dssp TTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS--------------SCEEEEESSSCEEEEEETTTTEEEEEEECS
T ss_pred CCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC--------------CEEEEEEccCCEEEEEECCcCcEEEEEeCC
Confidence 45677888888888877765 21 222221112222 233444556789999999999999998876
Q ss_pred CcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeeccc---e---eEEEEEEecCCCCEEEEecCCCeEEEEeCCC
Q psy6442 82 AVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVPA---Q---VHSASLLLNSERPIFVCGGEDLKMYKFDYST 154 (231)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~ 154 (231)
.....++ +++..++++. .+.+.++|..+.+.++++.... + .+.+.+ . ++.+.+..-.+..|.+.|.++
T Consensus 136 ~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~--~-dG~lyanvw~s~~I~vIDp~T 210 (268)
T 3nok_A 136 GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC--A-NGVIYANIWHSSDVLEIDPAT 210 (268)
T ss_dssp SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE--E-TTEEEEEETTCSEEEEECTTT
T ss_pred CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE--e-CCEEEEEECCCCeEEEEeCCC
Confidence 5544444 6778888876 5789999999988887765422 1 222333 2 566665555677899999999
Q ss_pred cceeeeccCC-------------CCCeeEEEEcCCCC-EEEEe
Q psy6442 155 GAEIESFKGH-------------FGPIHCVKFSPDGE-LYASG 183 (231)
Q Consensus 155 ~~~~~~~~~h-------------~~~V~~v~~spd~~-~laS~ 183 (231)
++.+..+.-. ..-.+.+||+|+++ +++||
T Consensus 211 G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 211 GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9876654321 13568999999754 55554
No 229
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.67 E-value=7.5e-06 Score=64.42 Aligned_cols=140 Identities=9% Similarity=0.133 Sum_probs=100.7
Q ss_pred EEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeeccc---e---eEEE
Q psy6442 55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVPA---Q---VHSA 127 (231)
Q Consensus 55 l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~---~---~~~~ 127 (231)
.++.-.++++.++|..+.+.+.++..+ ......+++|+..++++. ++.+.++|..+.+.++.+.... + .+.+
T Consensus 79 yv~t~~~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nel 157 (266)
T 2iwa_A 79 YQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNEL 157 (266)
T ss_dssp EEEETTCSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEEEecCCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeE
Confidence 344445789999999999998888776 334455677888777765 4689999999988877765431 1 2333
Q ss_pred EEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCC-------------CCCeeEEEEcCCCC-EEEEeeCCCcEEEEe
Q psy6442 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGH-------------FGPIHCVKFSPDGE-LYASGSEDGTLRLWQ 193 (231)
Q Consensus 128 ~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h-------------~~~V~~v~~spd~~-~laS~s~d~~v~iwd 193 (231)
.+ . ++.+.+....+..|.+.|..+++.+..+.-. ....+.++|+|+++ +++++...+.+...+
T Consensus 158 e~--~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 158 EY--I-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp EE--E-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred EE--E-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 33 3 4555555556789999999999877766421 13568999999975 778888899998888
Q ss_pred CCCCC
Q psy6442 194 TNVGK 198 (231)
Q Consensus 194 ~~~~~ 198 (231)
+...+
T Consensus 235 l~~~~ 239 (266)
T 2iwa_A 235 LHLVR 239 (266)
T ss_dssp EEECC
T ss_pred Eeccc
Confidence 76543
No 230
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.65 E-value=1.2e-05 Score=64.21 Aligned_cols=192 Identities=13% Similarity=0.174 Sum_probs=109.1
Q ss_pred CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eC-
Q psy6442 4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FG- 81 (231)
Q Consensus 4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~- 81 (231)
++.++.|+. +|+ +..+..+.+.+..+.++++|+ .+++...++.|.+|+.. ++...... ..
T Consensus 66 ~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~---------------l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~ 127 (305)
T 3dr2_A 66 GRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQR---------------LVHCEHGRRAITRSDAD-GQAHLLVGRYAG 127 (305)
T ss_dssp TTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSC---------------EEEEETTTTEEEEECTT-SCEEEEECEETT
T ss_pred CCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCC---------------EEEEECCCCEEEEECCC-CCEEEEEeccCC
Confidence 345556654 344 344555556667777776643 23443445778888875 44322221 11
Q ss_pred ---CcceeEEEccCCCEEEEE----c--------------CCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEE
Q psy6442 82 ---AVPNSLEISRDGTTITVT----H--------------GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVC 140 (231)
Q Consensus 82 ---~~~~~v~~~~~~~~~~~~----~--------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (231)
..++.+++.|++...+.. . .+.+..++..+.+........ .... +.+++++..+..
T Consensus 128 ~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~-~p~g--l~~spdg~~lyv 204 (305)
T 3dr2_A 128 KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLD-HPNG--LAFSPDEQTLYV 204 (305)
T ss_dssp EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEES-SEEE--EEECTTSSEEEE
T ss_pred CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCC-CCcc--eEEcCCCCEEEE
Confidence 246789999999866531 1 245667776544433222111 2222 344888886666
Q ss_pred ecCC------CeEEEEeCCCccee--eec-cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCccc
Q psy6442 141 GGED------LKMYKFDYSTGAEI--ESF-KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLN 211 (231)
Q Consensus 141 g~~d------~~i~~~d~~~~~~~--~~~-~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~ 211 (231)
+... ..|+.|++..+... ..+ ....+.+..++++++|+++++. .++ |.+|+. .++.......-. .+
T Consensus 205 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~~-~g~~~~~~~~~~--~~ 279 (305)
T 3dr2_A 205 SQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTG-VCVFDS-DGQLLGHIPTPG--TA 279 (305)
T ss_dssp EECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSE-EEEECT-TSCEEEEEECSS--CC
T ss_pred EecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCc-EEEECC-CCCEEEEEECCC--ce
Confidence 5544 68999998654311 111 1123456779999999976655 444 999998 577666665322 24
Q ss_pred CCCCCCcccc
Q psy6442 212 NSLGLDSSGH 221 (231)
Q Consensus 212 ~~~~~~~~~~ 221 (231)
..+.+.++++
T Consensus 280 ~~~~f~~d~~ 289 (305)
T 3dr2_A 280 SNCTFDQAQQ 289 (305)
T ss_dssp CEEEECTTSC
T ss_pred eEEEEeCCCC
Confidence 4445544443
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.63 E-value=4.4e-06 Score=74.43 Aligned_cols=142 Identities=13% Similarity=0.132 Sum_probs=95.2
Q ss_pred CEEEEeCCCCCceEEEEeCC----------cceeEEEccCC---CEEEE-EcCCeEEEEECCCcceEEeeeccc-e----
Q psy6442 63 TVRLWDVSASAEVQKLEFGA----------VPNSLEISRDG---TTITV-THGSCVTFLDANSLELIKEHKVPA-Q---- 123 (231)
Q Consensus 63 ti~iwd~~~~~~~~~~~~~~----------~~~~v~~~~~~---~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~-~---- 123 (231)
+|..+|..+++.+-..+... .+..+....++ ..++. ..++.+..+|..+.+.+...+... .
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 58899999998887766421 22333333466 33443 356899999999988876654321 0
Q ss_pred -------eE-----------E-----------EEEEecCCCCEEEEecC-------------------------------
Q psy6442 124 -------VH-----------S-----------ASLLLNSERPIFVCGGE------------------------------- 143 (231)
Q Consensus 124 -------~~-----------~-----------~~~~~~~~~~~~~~g~~------------------------------- 143 (231)
+. . ....++|+..++.....
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 00 0 01223566555554321
Q ss_pred ------------CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442 144 ------------DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 144 ------------d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~ 205 (231)
.+.|..||+.+++.+.+++ +..++....+++++.++..++.|+.+++||..+|+.....+.
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 2679999999999887775 445666667888888888899999999999999998766553
No 232
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.62 E-value=8.2e-06 Score=63.79 Aligned_cols=158 Identities=12% Similarity=0.186 Sum_probs=102.6
Q ss_pred CceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEE-eCCCCEEEEeCCCCCceEEEEeCCcc
Q psy6442 6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISC-AEDKTVRLWDVSASAEVQKLEFGAVP 84 (231)
Q Consensus 6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~-s~D~ti~iwd~~~~~~~~~~~~~~~~ 84 (231)
.|+..|..+|+.++++.-.. ..+.....++ +.+|+.. -.++.+.++|..+.+.+.++..+...
T Consensus 66 ~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~---------------g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG 129 (262)
T 3nol_A 66 SIRKVDIESGKTLQQIELGK-RYFGEGISDW---------------KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG 129 (262)
T ss_dssp EEEEECTTTCCEEEEEECCT-TCCEEEEEEE---------------TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC
T ss_pred eEEEEECCCCcEEEEEecCC-ccceeEEEEe---------------CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc
Confidence 67777777777777654321 2222111111 3344444 45789999999999999998876543
Q ss_pred eeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeecc---ce---eEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce
Q psy6442 85 NSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVP---AQ---VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE 157 (231)
Q Consensus 85 ~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~ 157 (231)
. .+++++..++++. .+.+.++|..+.+.++.+... .+ .+.+.+ . ++.+.+..-.+..|.+.|.++++.
T Consensus 130 ~--glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~--~-~G~lyan~w~~~~I~vIDp~tG~V 204 (262)
T 3nol_A 130 W--GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEW--V-DGEIFANVWQTNKIVRIDPETGKV 204 (262)
T ss_dssp C--CEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE--E-TTEEEEEETTSSEEEEECTTTCBE
T ss_pred e--EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEE--E-CCEEEEEEccCCeEEEEECCCCcE
Confidence 3 4446778787775 468999999998888776552 12 222333 2 566665555677899999999987
Q ss_pred eeeccCC------------CCCeeEEEEcCCCCEEEEee
Q psy6442 158 IESFKGH------------FGPIHCVKFSPDGELYASGS 184 (231)
Q Consensus 158 ~~~~~~h------------~~~V~~v~~spd~~~laS~s 184 (231)
+..+.-. ..-.+.+||+|+++.|...+
T Consensus 205 ~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 205 TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 7665321 13458999999876554444
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.62 E-value=1e-05 Score=64.73 Aligned_cols=211 Identities=15% Similarity=0.147 Sum_probs=127.8
Q ss_pred CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccc----c------cc-----------ccCCCEEEEEeC
Q psy6442 2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAA----D------FQ-----------AKNNTRLISCAE 60 (231)
Q Consensus 2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~----d------~~-----------~~~~~~l~s~s~ 60 (231)
+.++.+..++ .+|+.+-.+..+...+.++...+++...+.... | +. ...+..|..++.
T Consensus 37 t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~ 115 (330)
T 3hxj_A 37 SSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDKVYAINPDGTEKWRFDTKKAIVSDFTIFEDILYVTSM 115 (330)
T ss_dssp STTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCEEEEECCCGGGGGGSCC-----CCEEEETTEEEEECT
T ss_pred cCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCcEEEECCCCcEEEEEECCCCcccCceEECCEEEEEec
Confidence 3467788888 778876665554445556666555443321110 0 00 012566788888
Q ss_pred CCCEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEE
Q psy6442 61 DKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFV 139 (231)
Q Consensus 61 D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (231)
++.+..+|.. ++........ ..+.++...+++...+.+.++.+..+|.. .+.......+.... ......+++.+.+
T Consensus 116 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~-~~~~~d~~g~l~v 192 (330)
T 3hxj_A 116 DGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAIT-SAASIGKDGTIYF 192 (330)
T ss_dssp TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCC-SCCEECTTCCEEE
T ss_pred CCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCce-eeeEEcCCCEEEE
Confidence 9999999988 6665555443 33456677778876666666889999987 55555544332211 1122355666544
Q ss_pred EecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcc
Q psy6442 140 CGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSS 219 (231)
Q Consensus 140 ~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (231)
. + +.++.+| .+++.+..+......+.++...+++.+++ ++.++.|..++. +++....... .+.....+.++.+
T Consensus 193 ~-t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~-~g~~~~~~~~-~~~~~~~~~~~~~ 265 (330)
T 3hxj_A 193 G-S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHLYAINP-DGTEKWRFKT-GKRIESSPVIGNT 265 (330)
T ss_dssp E-S--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EETTTEEEEECT-TSCEEEEEEC-SSCCCSCCEECTT
T ss_pred E-e--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-EcCCCeEEEECC-CCCEeEEeeC-CCCccccceEcCC
Confidence 4 3 7889999 67777766665556788999999987665 555777888874 5555433332 2233334555555
Q ss_pred cccc
Q psy6442 220 GHLN 223 (231)
Q Consensus 220 ~~~~ 223 (231)
|+++
T Consensus 266 g~l~ 269 (330)
T 3hxj_A 266 DTIY 269 (330)
T ss_dssp SCEE
T ss_pred CeEE
Confidence 5543
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.53 E-value=1.3e-05 Score=69.54 Aligned_cols=216 Identities=9% Similarity=0.008 Sum_probs=137.2
Q ss_pred CCCceeeeccCCCeEe--eeecccccEEEEEE-C-CCCceeEecccccc--ccCCCEEEEE-eCCCCEEEEeCCCCCceE
Q psy6442 4 DGKPMLRQGDTGDWIG--TFEGHKGCVWGVDI-N-KDASKAASGAADFQ--AKNNTRLISC-AEDKTVRLWDVSASAEVQ 76 (231)
Q Consensus 4 d~~~~~~~~~~g~~i~--~l~gH~~~V~~~~~-~-~~~~~~~s~~~d~~--~~~~~~l~s~-s~D~ti~iwd~~~~~~~~ 76 (231)
++.|.+.+..+.+..+ .+... .....+.+ + |+++++..++.... +.++..|..+ -.++.+-+.|..+.+...
T Consensus 111 ~~rVavIdl~t~~~~~ii~ip~g-~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~ 189 (595)
T 1fwx_A 111 NTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAW 189 (595)
T ss_dssp TTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCceEeeEEeCCCC-CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEE
Confidence 4457777888888766 44322 23677777 4 78777665543222 1223333222 234578889999998888
Q ss_pred EEEeCCcceeEEEccCCCEEEEEcCC---------------------------------------eEEEEECCC--cce-
Q psy6442 77 KLEFGAVPNSLEISRDGTTITVTHGS---------------------------------------CVTFLDANS--LEL- 114 (231)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~~~~~~~~~---------------------------------------~i~~~d~~~--~~~- 114 (231)
.+..+..+..++.+|+++.+++++.+ .+.+.|..+ ...
T Consensus 190 qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~ 269 (595)
T 1fwx_A 190 QVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLF 269 (595)
T ss_dssp EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSS
T ss_pred EEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCcee
Confidence 88887788999999999988875421 245556555 223
Q ss_pred EEeeeccceeEEEEEEecCCCCEEEEe-cCCCeEEEEeCCCcc------------eeeeccCCCCCeeEEEEcCCCCEEE
Q psy6442 115 IKEHKVPAQVHSASLLLNSERPIFVCG-GEDLKMYKFDYSTGA------------EIESFKGHFGPIHCVKFSPDGELYA 181 (231)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~~~d~~~~~------------~~~~~~~h~~~V~~v~~spd~~~la 181 (231)
++.+..+...+.+ ..+|+++.++.. ..+.++.++|..+.+ ...+.+ -....+.++|+|+|..+.
T Consensus 270 ~~~Ipvg~~PhGv--~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~ 346 (595)
T 1fwx_A 270 TRYIPIANNPHGC--NMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYT 346 (595)
T ss_dssp EEEEEEESSCCCE--EECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEE
T ss_pred EEEEecCCCceEE--EEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEE
Confidence 3344333333333 348899876554 566789999998652 233333 123467899999997677
Q ss_pred EeeCCCcEEEEeCCC----------CCeeeeeecc-C---CcccCCCCCCcccccc
Q psy6442 182 SGSEDGTLRLWQTNV----------GKTYGLWKCI-E---GGLNNSLGLDSSGHLN 223 (231)
Q Consensus 182 S~s~d~~v~iwd~~~----------~~~~~~~~~~-~---~~~~~~~~~~~~~~~~ 223 (231)
+.-.|++|.+||+.. .+..+..... . ...+.-+....+|+.+
T Consensus 347 t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l 402 (595)
T 1fwx_A 347 SLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWL 402 (595)
T ss_dssp EETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEE
T ss_pred EEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEE
Confidence 888999999999877 4555555432 2 2334555667777765
No 235
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.52 E-value=1.6e-06 Score=70.69 Aligned_cols=173 Identities=11% Similarity=0.045 Sum_probs=100.4
Q ss_pred CCceeeeccCCCeEeeeecc------cccEEEEEECCCCceeEeccccccccCCCEEEEEe---CCCCEEEEeCCCCCce
Q psy6442 5 GKPMLRQGDTGDWIGTFEGH------KGCVWGVDINKDASKAASGAADFQAKNNTRLISCA---EDKTVRLWDVSASAEV 75 (231)
Q Consensus 5 ~~~~~~~~~~g~~i~~l~gH------~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s---~D~ti~iwd~~~~~~~ 75 (231)
++|..|+..+|+++.++..+ ...+..+.+++++ +..+++-. .++.|.+||+.+++..
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~--------------g~~yvtd~~~~~~~~i~v~d~~~g~~~ 158 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIH--------------NFVYISDPAPDDKAALIRVDLQTGLAA 158 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTT--------------TEEEEEECCSGGGCEEEEEETTTCCEE
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCC--------------CEEEEEcCccCCCCeEEEEECCCCCEE
Confidence 45666666666666555421 1223445554432 22344544 5788999998876654
Q ss_pred EEEEe------------------------------CCcceeEEEccCCCEEEEEc--CCeEEEEECC---Ccc-----e-
Q psy6442 76 QKLEF------------------------------GAVPNSLEISRDGTTITVTH--GSCVTFLDAN---SLE-----L- 114 (231)
Q Consensus 76 ~~~~~------------------------------~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~---~~~-----~- 114 (231)
+.+.. ...++.++++|+++.+++.. ...+..++.. ... .
T Consensus 159 r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 238 (343)
T 2qe8_A 159 RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELG 238 (343)
T ss_dssp EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHH
T ss_pred EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhh
Confidence 43311 01257899999998887754 2355555421 100 0
Q ss_pred --EEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccC-CCCCeeEEEEcCCCCEEEEeeCCCcEEE
Q psy6442 115 --IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG-HFGPIHCVKFSPDGELYASGSEDGTLRL 191 (231)
Q Consensus 115 --~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~-h~~~V~~v~~spd~~~laS~s~d~~v~i 191 (231)
+...........+ ..++++.+.++...+++|.+||..+++....... +...+.+++|.|++.++++.+..+.+.+
T Consensus 239 ~~~~~~g~~g~pdgi--a~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~ 316 (343)
T 2qe8_A 239 SKIERYSEKPICDGI--SIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAP 316 (343)
T ss_dssp TTCEEEEECCSCSCE--EECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGG
T ss_pred cceEecccCCCCceE--EECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccc
Confidence 0111001111222 3377888888888889999999855553222221 2456889999999999888887666655
Q ss_pred Ee
Q psy6442 192 WQ 193 (231)
Q Consensus 192 wd 193 (231)
|+
T Consensus 317 f~ 318 (343)
T 2qe8_A 317 LN 318 (343)
T ss_dssp GB
T ss_pred cc
Confidence 55
No 236
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.52 E-value=1.9e-05 Score=64.70 Aligned_cols=148 Identities=13% Similarity=0.066 Sum_probs=88.7
Q ss_pred CCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEE----
Q psy6442 51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHS---- 126 (231)
Q Consensus 51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~---- 126 (231)
.+..++.++.|+.|..+|..+++.+........+.......++..++.+.++.+..+|..+.+.+.....+.+...
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 181 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE 181 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence 3567888889999999999999988777665433222122344444445677899999988887776655332210
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCC-------CeeEEEEcC--CCCEEEEeeCCCcEEEEeCCCC
Q psy6442 127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFG-------PIHCVKFSP--DGELYASGSEDGTLRLWQTNVG 197 (231)
Q Consensus 127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~-------~V~~v~~sp--d~~~laS~s~d~~v~iwd~~~~ 197 (231)
...... +..++.+..++.+..+|..+++.+..+..... .+..+.-+| .+..+..++.++.|..+|..+|
T Consensus 182 ~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG 259 (376)
T 3q7m_A 182 SAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG 259 (376)
T ss_dssp CCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC
T ss_pred CCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC
Confidence 001111 23567778889999999988887765432110 000011111 1345555666777777777777
Q ss_pred Cee
Q psy6442 198 KTY 200 (231)
Q Consensus 198 ~~~ 200 (231)
+..
T Consensus 260 ~~~ 262 (376)
T 3q7m_A 260 QIM 262 (376)
T ss_dssp CEE
T ss_pred cEE
Confidence 644
No 237
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.49 E-value=1.3e-05 Score=65.74 Aligned_cols=143 Identities=9% Similarity=0.061 Sum_probs=90.4
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcce------eEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeecccee
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPN------SLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQV 124 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~ 124 (231)
+..++.++.++.|..+|..+++.+........+. ..... ++ .+++ ..++.+..+|..+.+.+.......+.
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~ 220 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQAT 220 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TT-EEEECCTTTEEEEEETTTCCEEEEEECCC--
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCC
Confidence 4578888889999999999998877766543321 11222 33 3444 44678999999888777665433210
Q ss_pred EEE---E---EEecC--CCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442 125 HSA---S---LLLNS--ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV 196 (231)
Q Consensus 125 ~~~---~---~~~~~--~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~ 196 (231)
... . ....| .+..+..++.++.++.+|..+++.+..... .....+.. ++..+..++.++.|..+|..+
T Consensus 221 ~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~t 296 (376)
T 3q7m_A 221 GSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDG 296 (376)
T ss_dssp ---------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTT
T ss_pred CCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCC
Confidence 000 0 00000 134466677889999999999988766542 23334433 355677778899999999999
Q ss_pred CCee
Q psy6442 197 GKTY 200 (231)
Q Consensus 197 ~~~~ 200 (231)
|+..
T Consensus 297 G~~~ 300 (376)
T 3q7m_A 297 GVTL 300 (376)
T ss_dssp CCEE
T ss_pred CcEE
Confidence 9864
No 238
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.48 E-value=6.4e-06 Score=69.26 Aligned_cols=142 Identities=14% Similarity=0.107 Sum_probs=100.2
Q ss_pred CCCEEEEEeCC-----CCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc-----------CCeEEEEECCCcce
Q psy6442 51 NNTRLISCAED-----KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH-----------GSCVTFLDANSLEL 114 (231)
Q Consensus 51 ~~~~l~s~s~D-----~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----------~~~i~~~d~~~~~~ 114 (231)
++.+++.+... ++|-+.|..+++.+..+..+..+ .++++||++.++++. ++.+.++|..+.+.
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v 161 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP 161 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence 45565555543 69999999999999999988888 999999999888764 45899999999988
Q ss_pred EEeeecc--------ceeEEEEEEecCCCCEEEEecC--CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCC-CEEEEe
Q psy6442 115 IKEHKVP--------AQVHSASLLLNSERPIFVCGGE--DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDG-ELYASG 183 (231)
Q Consensus 115 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~--d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~-~~laS~ 183 (231)
++++..+ .... .+.++++++.+..++. +..|.++|+.+++.+.++.--. +....|++ +.+++.
T Consensus 162 v~~I~v~g~~r~~~g~~P~--~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 162 IADIELPDAPRFLVGTYQW--MNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMN 235 (426)
T ss_dssp EEEEEETTCCCCCBSCCGG--GSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEE
T ss_pred EEEEECCCccccccCCCcc--eEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEE
Confidence 8877653 1111 2334889998887764 5789999999998887765211 12333433 455555
Q ss_pred eCCCcEEEEeCCCCCe
Q psy6442 184 SEDGTLRLWQTNVGKT 199 (231)
Q Consensus 184 s~d~~v~iwd~~~~~~ 199 (231)
+.||.+.+.+..+++.
T Consensus 236 ~~dG~~~~V~~~~~~v 251 (426)
T 3c75_H 236 CRDGSLARVDFADGET 251 (426)
T ss_dssp ETTSSEEEEECCTTCC
T ss_pred cCCCCEEEEECCCCcE
Confidence 6666666666644443
No 239
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.46 E-value=1.4e-05 Score=71.32 Aligned_cols=101 Identities=10% Similarity=0.061 Sum_probs=68.3
Q ss_pred CCCEEEEeCCCCCceEEEEeCCcc---------------------------------eeEEEccCCCEEEEEcCC-----
Q psy6442 61 DKTVRLWDVSASAEVQKLEFGAVP---------------------------------NSLEISRDGTTITVTHGS----- 102 (231)
Q Consensus 61 D~ti~iwd~~~~~~~~~~~~~~~~---------------------------------~~v~~~~~~~~~~~~~~~----- 102 (231)
|+.|..+|..+++.+-........ ..++++|++..+++...+
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 789999999999988777642211 246788888888765432
Q ss_pred ---------------eEEEEECCCcceEEeeeccce--------eEEEEEEecCCC---CEEEEecCCCeEEEEeCCCcc
Q psy6442 103 ---------------CVTFLDANSLELIKEHKVPAQ--------VHSASLLLNSER---PIFVCGGEDLKMYKFDYSTGA 156 (231)
Q Consensus 103 ---------------~i~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~---~~~~~g~~d~~i~~~d~~~~~ 156 (231)
.+.-+|..+.+.+..+..... ..........++ ..++.++.++.++.+|..+|+
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 488889988887766543110 001111112244 568888999999999999998
Q ss_pred eeeec
Q psy6442 157 EIESF 161 (231)
Q Consensus 157 ~~~~~ 161 (231)
.+..+
T Consensus 349 ~l~~~ 353 (677)
T 1kb0_A 349 FISAK 353 (677)
T ss_dssp EEEEE
T ss_pred Eeccc
Confidence 87654
No 240
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.41 E-value=9.6e-05 Score=57.17 Aligned_cols=159 Identities=11% Similarity=0.119 Sum_probs=100.3
Q ss_pred CceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcce
Q psy6442 6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPN 85 (231)
Q Consensus 6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~ 85 (231)
.|+..|..+|+.+++..-... .+....... ++...+..-.++.+.++|..+.+.+.++..+....
T Consensus 44 ~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~--------------~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gw 108 (243)
T 3mbr_X 44 SVRKVDLETGRILQRAEVPPP-YFGAGIVAW--------------RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGW 108 (243)
T ss_dssp EEEEEETTTCCEEEEEECCTT-CCEEEEEEE--------------TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCC
T ss_pred eEEEEECCCCCEEEEEeCCCC-cceeEEEEe--------------CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCce
Confidence 567777777777666542211 111111111 12233444567899999999999999998766544
Q ss_pred eEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeeccc---e---eEEEEEEecCCCCEEEEecCCCeEEEEeCCCccee
Q psy6442 86 SLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVPA---Q---VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI 158 (231)
Q Consensus 86 ~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~ 158 (231)
.+ ++++..++++. ++.+.++|..+.+.++++.... + .+.+.+ .++.+.+..-.+..|.+.|.++++.+
T Consensus 109 gl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~---~~G~lyanvw~s~~I~vIDp~tG~V~ 183 (243)
T 3mbr_X 109 AL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW---VNGELLANVWLTSRIARIDPASGKVV 183 (243)
T ss_dssp EE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE---ETTEEEEEETTTTEEEEECTTTCBEE
T ss_pred EE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE---eCCEEEEEECCCCeEEEEECCCCCEE
Confidence 44 56777777775 4689999999988887765421 1 222222 25555555555678999999999876
Q ss_pred eeccCC-------------CCCeeEEEEcCCCCEEEEee
Q psy6442 159 ESFKGH-------------FGPIHCVKFSPDGELYASGS 184 (231)
Q Consensus 159 ~~~~~h-------------~~~V~~v~~spd~~~laS~s 184 (231)
..+.-. ..-.+.+|++|+++.|...+
T Consensus 184 ~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 184 AWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 654311 13468899999866444333
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.39 E-value=3.1e-05 Score=61.87 Aligned_cols=160 Identities=15% Similarity=0.123 Sum_probs=97.1
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccc-eeEEEEE
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPA-QVHSASL 129 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~ 129 (231)
+..|..++.++.|..+|.. ++.+...... ..+.++...+++...+.+ +.+..+| .+.+.......+. .+.. +
T Consensus 147 ~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~--~ 220 (330)
T 3hxj_A 147 DGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTR--P 220 (330)
T ss_dssp TSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSC--C
T ss_pred CCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceec--e
Confidence 4457778888999999998 7766665543 345666777777755444 7788888 5544444433322 2222 2
Q ss_pred EecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCc
Q psy6442 130 LLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGG 209 (231)
Q Consensus 130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~ 209 (231)
...+++. +..++.++.+..+|. ++..+..+......+.++.+.+++.++ .++.++.|..+|. +++....... .+.
T Consensus 221 ~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~ggl~~~d~-~g~~~~~~~~-~~~ 295 (330)
T 3hxj_A 221 AISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIY-FGSYDGHLYAINP-DGTEKWNFET-GSW 295 (330)
T ss_dssp EECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEE-EECTTCEEEEECT-TSCEEEEEEC-SSC
T ss_pred EECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEE-EecCCCCEEEECC-CCcEEEEEEc-CCc
Confidence 2355554 445566778888874 566666655444445566777677654 4667888999996 6765544332 233
Q ss_pred ccCCCCCCccccc
Q psy6442 210 LNNSLGLDSSGHL 222 (231)
Q Consensus 210 ~~~~~~~~~~~~~ 222 (231)
....+..+.+|++
T Consensus 296 ~~~~~~~d~~g~l 308 (330)
T 3hxj_A 296 IIATPVIDENGTI 308 (330)
T ss_dssp CCSCCEECTTCCE
T ss_pred cccceEEcCCCEE
Confidence 3444445455543
No 242
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.38 E-value=1.3e-05 Score=71.52 Aligned_cols=164 Identities=10% Similarity=0.096 Sum_probs=98.5
Q ss_pred cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCc-ceeEEEccCCCEEEEE-c
Q psy6442 23 GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAV-PNSLEISRDGTTITVT-H 100 (231)
Q Consensus 23 gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~ 100 (231)
+|...+..+.|+|||++++-+.. .+++.+.+|++||+.+++.+.. ..... ...++|+ |++.++.. .
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~----------~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~ 193 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLS----------LAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSY 193 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEE----------CSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEES
T ss_pred CCcEEEEEEEECCCCCEEEEEEe----------cCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEe
Confidence 45567888899999876643210 0122335799999999986543 22222 4578999 99876654 3
Q ss_pred C-------------CeEEEEECCCcce--EEeeeccc--eeEEEEEEecCCCCEEEEec----CCCeEEEEeCCCcc-ee
Q psy6442 101 G-------------SCVTFLDANSLEL--IKEHKVPA--QVHSASLLLNSERPIFVCGG----EDLKMYKFDYSTGA-EI 158 (231)
Q Consensus 101 ~-------------~~i~~~d~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~g~----~d~~i~~~d~~~~~-~~ 158 (231)
+ ..+.+|++.+... ...+..+. +........+++++.++... ....|+++|+.++. ..
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~ 273 (693)
T 3iuj_A 194 DKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPL 273 (693)
T ss_dssp SCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCC
T ss_pred cCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCce
Confidence 3 2377888765432 22222222 22123344588888765432 23589999987653 34
Q ss_pred eeccCCCCCeeEEEEcCCCCE-EEEeeCC---CcEEEEeCCCCCe
Q psy6442 159 ESFKGHFGPIHCVKFSPDGEL-YASGSED---GTLRLWQTNVGKT 199 (231)
Q Consensus 159 ~~~~~h~~~V~~v~~spd~~~-laS~s~d---~~v~iwd~~~~~~ 199 (231)
..+..+....... +++++.. ++....+ +.|.++++.++..
T Consensus 274 ~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~ 317 (693)
T 3iuj_A 274 LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP 317 (693)
T ss_dssp EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence 5555566665555 6676654 4444443 5788999987754
No 243
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.37 E-value=1.3e-05 Score=69.51 Aligned_cols=188 Identities=13% Similarity=0.081 Sum_probs=124.7
Q ss_pred CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccc---------------------------ccCCCEEE
Q psy6442 4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ---------------------------AKNNTRLI 56 (231)
Q Consensus 4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~---------------------------~~~~~~l~ 56 (231)
++.+.+.|.++.+.+.+..--. .-..++++|+|+.+...+.+-. +.+++.+.
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred CceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 4566777777777766654211 2245678899988887654320 11344333
Q ss_pred EEeCCCCEEEEeCCC--CCc-eEEEEeCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcc------------eEEeee
Q psy6442 57 SCAEDKTVRLWDVSA--SAE-VQKLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLE------------LIKEHK 119 (231)
Q Consensus 57 s~s~D~ti~iwd~~~--~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~------------~~~~~~ 119 (231)
. +.|.+.|..+ ++. +..+..+..+-.+.++|||+.++++. .+.+.++|..+.+ ......
T Consensus 253 i----~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~ 328 (595)
T 1fwx_A 253 L----NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 328 (595)
T ss_dssp E----TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred E----CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence 2 5699999998 555 67888888899999999999998875 4689999988653 223333
Q ss_pred ccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCC----------cceeeeccCCCCCe-----eEEEEcCCCCEEEEee
Q psy6442 120 VPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYST----------GAEIESFKGHFGPI-----HCVKFSPDGELYASGS 184 (231)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~----------~~~~~~~~~h~~~V-----~~v~~spd~~~laS~s 184 (231)
...... -..+++++...++---+..|-.||... .+.+.++..|..+- ..+.++|||++|.+..
T Consensus 329 vG~gP~--h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 329 LGLGPL--HTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp CCSCEE--EEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred CCCCcc--eEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 222222 234488884445566788999999876 45566666665442 2345789999988875
Q ss_pred ---CCCcE----------EEEeCCCCC
Q psy6442 185 ---EDGTL----------RLWQTNVGK 198 (231)
Q Consensus 185 ---~d~~v----------~iwd~~~~~ 198 (231)
.|+.+ .|+|+..++
T Consensus 407 k~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 407 KFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp SCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred CCCccccccCCCCCCCcceEEEcCCCc
Confidence 35542 889996555
No 244
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.34 E-value=3.2e-05 Score=65.03 Aligned_cols=170 Identities=13% Similarity=0.153 Sum_probs=109.7
Q ss_pred EEEEEeCCCCEEEEeCCCC----CceEEEE---e----C-CcceeEEEccCCCEEEE-EcC------CeEEEEECCCcce
Q psy6442 54 RLISCAEDKTVRLWDVSAS----AEVQKLE---F----G-AVPNSLEISRDGTTITV-THG------SCVTFLDANSLEL 114 (231)
Q Consensus 54 ~l~s~s~D~ti~iwd~~~~----~~~~~~~---~----~-~~~~~v~~~~~~~~~~~-~~~------~~i~~~d~~~~~~ 114 (231)
.++++..+++|.+.|+.+. +...+++ + + ..+-.+.+.|++ .++. ..+ +.+.++|..+.+.
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 3667778899999999754 3344442 1 1 245677889999 3322 222 5799999999888
Q ss_pred EEeeeccc--eeEEEEEEecCCCCEEEEec-------------------CCCeEEEEeCCCcceeeeccCC--CCCeeEE
Q psy6442 115 IKEHKVPA--QVHSASLLLNSERPIFVCGG-------------------EDLKMYKFDYSTGAEIESFKGH--FGPIHCV 171 (231)
Q Consensus 115 ~~~~~~~~--~~~~~~~~~~~~~~~~~~g~-------------------~d~~i~~~d~~~~~~~~~~~~h--~~~V~~v 171 (231)
+.+...+. ....+.+.++|++..+++.. ...+|.+||+.+++.++++.-- ......+
T Consensus 177 ~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i 256 (462)
T 2ece_A 177 LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALEL 256 (462)
T ss_dssp EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEE
T ss_pred EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCcccee
Confidence 88775431 12222345588888888875 3678999999988877776531 1234566
Q ss_pred EE--cCCCCEEEEe-e-----CCCcEEEEeCCCCCeeeeeec-------cC-------------CcccCCCCCCcccccc
Q psy6442 172 KF--SPDGELYASG-S-----EDGTLRLWQTNVGKTYGLWKC-------IE-------------GGLNNSLGLDSSGHLN 223 (231)
Q Consensus 172 ~~--spd~~~laS~-s-----~d~~v~iwd~~~~~~~~~~~~-------~~-------------~~~~~~~~~~~~~~~~ 223 (231)
.| +|+++++..+ . .+++|.+|....|+ +..-+. +. +..++-|.++.+|+++
T Consensus 257 ~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfL 335 (462)
T 2ece_A 257 RPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFL 335 (462)
T ss_dssp EECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEE
T ss_pred EeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEE
Confidence 66 9999865444 4 67789887765543 111110 00 3567788888888776
Q ss_pred ce
Q psy6442 224 NV 225 (231)
Q Consensus 224 ~~ 225 (231)
=|
T Consensus 336 YV 337 (462)
T 2ece_A 336 YL 337 (462)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 245
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.31 E-value=0.00061 Score=53.00 Aligned_cols=146 Identities=6% Similarity=0.030 Sum_probs=86.3
Q ss_pred EEEEeCCCCEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEEEEEc----CCeEEEEECCCcceEEeeeccc-eeEEEE
Q psy6442 55 LISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITVTH----GSCVTFLDANSLELIKEHKVPA-QVHSAS 128 (231)
Q Consensus 55 l~s~s~D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~----~~~i~~~d~~~~~~~~~~~~~~-~~~~~~ 128 (231)
+++-...+.|.+++.........+... ..+..++++|++..++++. .+.|..++.............. ....
T Consensus 94 yv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~g-- 171 (267)
T 1npe_A 94 FWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNG-- 171 (267)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEE--
T ss_pred EEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcE--
Confidence 344445678888888644332222222 4688999999777666654 2467777765322111111111 2223
Q ss_pred EEecCCCC-EEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442 129 LLLNSERP-IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK 204 (231)
Q Consensus 129 ~~~~~~~~-~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~ 204 (231)
+..++++. +.++-....+|+.+|.........+.+ ......++.. .+.++++....+.|..+|..+++....+.
T Consensus 172 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 33466554 445555668899999865443333332 2334567664 45566666678899999999999887775
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.24 E-value=0.00011 Score=65.43 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=47.6
Q ss_pred CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442 144 DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 144 d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~ 205 (231)
++.|+.||..+++.+.+++.+ .++....+...+.++..++.|+.++.||.++|+.+...+.
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 478999999999988776533 3444445666777888899999999999999998766654
No 247
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.18 E-value=0.00025 Score=63.34 Aligned_cols=151 Identities=11% Similarity=0.126 Sum_probs=97.1
Q ss_pred CCCEEEEEeCCCCEEEEeCCCCCceEEEEeC-Cc--ceeEEEcc---CCCEEEEEc-------CCeEEEEECCCcceEEe
Q psy6442 51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFG-AV--PNSLEISR---DGTTITVTH-------GSCVTFLDANSLELIKE 117 (231)
Q Consensus 51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~-~~--~~~v~~~~---~~~~~~~~~-------~~~i~~~d~~~~~~~~~ 117 (231)
.+.+|+.++.|+.|.-+|..+++.+-..... .. ...+..+| ++ .+++.. ++.+.-+|..+.+.+..
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 3567888999999999999999988776543 10 01111111 33 334432 46788899998887766
Q ss_pred eec-c---ce-----------------------eEE---EEEEecCCCCEEEEecCCC-------------------eEE
Q psy6442 118 HKV-P---AQ-----------------------VHS---ASLLLNSERPIFVCGGEDL-------------------KMY 148 (231)
Q Consensus 118 ~~~-~---~~-----------------------~~~---~~~~~~~~~~~~~~g~~d~-------------------~i~ 148 (231)
+.. + .. ... .....+++..++..+..++ .|+
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 542 1 00 000 0123366667777776665 399
Q ss_pred EEeCCCcceeeeccC--CC-------CCeeEEEEcCCCC---EEEEeeCCCcEEEEeCCCCCeeee
Q psy6442 149 KFDYSTGAEIESFKG--HF-------GPIHCVKFSPDGE---LYASGSEDGTLRLWQTNVGKTYGL 202 (231)
Q Consensus 149 ~~d~~~~~~~~~~~~--h~-------~~V~~v~~spd~~---~laS~s~d~~v~iwd~~~~~~~~~ 202 (231)
.+|..+|+.+..++. |. .++.......+|. .++.++.+|.++++|..+|+....
T Consensus 279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 344 (689)
T 1yiq_A 279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA 344 (689)
T ss_dssp EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence 999999998876643 21 2222223333564 788999999999999999998643
No 248
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.12 E-value=0.0015 Score=53.14 Aligned_cols=185 Identities=17% Similarity=0.251 Sum_probs=115.7
Q ss_pred CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCC---E-EEEEeC--CCCEEEEeC--CCCCce
Q psy6442 4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNT---R-LISCAE--DKTVRLWDV--SASAEV 75 (231)
Q Consensus 4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~---~-l~s~s~--D~ti~iwd~--~~~~~~ 75 (231)
++-+.+++. +|+.++.+.. +.+..++.-|+-. . .++ . ++|.-. +.+|.++++ .++. +
T Consensus 49 ~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~----------l-~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 49 KSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFP----------L-NGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp TTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEE----------E-TTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred CCCEEEEcC-CCcEEEEccC--CCcccEEEecccc----------c-CCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 355778887 7888888764 5677776655210 0 111 1 344444 578999966 3333 4
Q ss_pred EEEE-------eC-CcceeEEE--ccC-CC-EEEEE-cCCeEEEEECC-------CcceEEeeeccceeEEEEEEecCCC
Q psy6442 76 QKLE-------FG-AVPNSLEI--SRD-GT-TITVT-HGSCVTFLDAN-------SLELIKEHKVPAQVHSASLLLNSER 135 (231)
Q Consensus 76 ~~~~-------~~-~~~~~v~~--~~~-~~-~~~~~-~~~~i~~~d~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (231)
..+. .. ..++.++. +|. +. +++++ .++.+..|++. ..+.++++..+.+...+.. ++..
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~Egcvv--Dd~~ 191 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAA--DDEY 191 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEE--ETTT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEE--cCCC
Confidence 4441 11 45667777 664 43 45555 45777777652 3345677777666555444 6777
Q ss_pred CEEEEecCCCeEEEEeCC-----Ccceeeecc-CC-CCCeeEEEE--cCCCC--EEEEeeCCCcEEEEeCC-CCCeeeee
Q psy6442 136 PIFVCGGEDLKMYKFDYS-----TGAEIESFK-GH-FGPIHCVKF--SPDGE--LYASGSEDGTLRLWQTN-VGKTYGLW 203 (231)
Q Consensus 136 ~~~~~g~~d~~i~~~d~~-----~~~~~~~~~-~h-~~~V~~v~~--spd~~--~laS~s~d~~v~iwd~~-~~~~~~~~ 203 (231)
..+..+-++.-||.++.+ +++.+..+. +| .+.+..|++ .++++ +|+|+-.+++..+||.+ +.+....+
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 778888888889999964 344555442 33 347888888 45554 56666578899999996 66777766
Q ss_pred ec
Q psy6442 204 KC 205 (231)
Q Consensus 204 ~~ 205 (231)
+-
T Consensus 272 ~I 273 (355)
T 3amr_A 272 RI 273 (355)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 249
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.01 E-value=0.0023 Score=55.83 Aligned_cols=101 Identities=8% Similarity=-0.068 Sum_probs=64.6
Q ss_pred CCCEEEEeCCCCCceEEEEeCCcc---------------------------------------eeEEEccCCCEEEEEcC
Q psy6442 61 DKTVRLWDVSASAEVQKLEFGAVP---------------------------------------NSLEISRDGTTITVTHG 101 (231)
Q Consensus 61 D~ti~iwd~~~~~~~~~~~~~~~~---------------------------------------~~v~~~~~~~~~~~~~~ 101 (231)
|+.|..+|..+++.+-........ ..+++.++...+++...
T Consensus 175 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g 254 (571)
T 2ad6_A 175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG 254 (571)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred CCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECC
Confidence 799999999999988777653221 12455666566665432
Q ss_pred -----------------CeEEEEECCCcceEEeeeccc--------eeEEEEEEecCCC---CEEEEecCCCeEEEEeCC
Q psy6442 102 -----------------SCVTFLDANSLELIKEHKVPA--------QVHSASLLLNSER---PIFVCGGEDLKMYKFDYS 153 (231)
Q Consensus 102 -----------------~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~---~~~~~g~~d~~i~~~d~~ 153 (231)
+.+.-+|..+.+.+..+.... ...........++ ..++.++.++.++.+|..
T Consensus 255 ~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 334 (571)
T 2ad6_A 255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE 334 (571)
T ss_dssp CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred CCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECC
Confidence 257788988888776654321 0011111112245 356678889999999999
Q ss_pred Ccceeeec
Q psy6442 154 TGAEIESF 161 (231)
Q Consensus 154 ~~~~~~~~ 161 (231)
+++.+..+
T Consensus 335 tG~~~w~~ 342 (571)
T 2ad6_A 335 NGNLIVAE 342 (571)
T ss_dssp TCCEEEEE
T ss_pred CCCEEeee
Confidence 99877654
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.00 E-value=0.003 Score=49.03 Aligned_cols=142 Identities=6% Similarity=0.033 Sum_probs=84.3
Q ss_pred EEEEeCCCCEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeEEEEEE
Q psy6442 55 LISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVHSASLL 130 (231)
Q Consensus 55 l~s~s~D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~ 130 (231)
+++-...+.|..++...+.....+... ..+..+++.+++..++++. .+.|..++............. ..... +.
T Consensus 51 y~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~--i~ 128 (267)
T 1npe_A 51 YWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRG--IV 128 (267)
T ss_dssp EEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEE--EE
T ss_pred EEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccE--EE
Confidence 445555678999998765443323222 4688999999877777654 468888887643222111111 12233 33
Q ss_pred ecCC-CCEEEEecC--CCeEEEEeCCCcceeeec-cCCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCCCCe
Q psy6442 131 LNSE-RPIFVCGGE--DLKMYKFDYSTGAEIESF-KGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTNVGKT 199 (231)
Q Consensus 131 ~~~~-~~~~~~g~~--d~~i~~~d~~~~~~~~~~-~~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~~~~~ 199 (231)
.+++ +.+.++... .++|+.++... .....+ .........++++|++. ++++-...+.|..++...++.
T Consensus 129 vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~ 201 (267)
T 1npe_A 129 TDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR 201 (267)
T ss_dssp EETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE
T ss_pred EeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce
Confidence 4664 444444332 46888887643 222222 12234578999999765 556667788999999875443
No 251
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.94 E-value=0.0045 Score=49.19 Aligned_cols=185 Identities=12% Similarity=0.100 Sum_probs=103.6
Q ss_pred CCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCC
Q psy6442 14 TGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDG 93 (231)
Q Consensus 14 ~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 93 (231)
..+.+..|..+ .....+.|.++++ .+++-...+.|..+|... +....+.....+..+++.+++
T Consensus 21 ~~~~~~~~p~~-~~pegia~~~~g~---------------lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG 83 (306)
T 2p4o_A 21 PAKIITSFPVN-TFLENLASAPDGT---------------IFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNG 83 (306)
T ss_dssp CEEEEEEECTT-CCEEEEEECTTSC---------------EEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTS
T ss_pred CceEeEeCCCC-CCcceEEECCCCC---------------EEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCC
Confidence 34556666433 3456777877643 344544677888888764 334445556678999999999
Q ss_pred CEEEEEcC--C-eEEEEECCCcceEEeeeccc-e-eEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc-eee--------
Q psy6442 94 TTITVTHG--S-CVTFLDANSLELIKEHKVPA-Q-VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA-EIE-------- 159 (231)
Q Consensus 94 ~~~~~~~~--~-~i~~~d~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~-~~~-------- 159 (231)
+.+++... + .+..++..+.+.......+. . ...... .+.+..+++-...+.|+.+|...+. .+.
T Consensus 84 ~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~--~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~ 161 (306)
T 2p4o_A 84 DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITP--LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR 161 (306)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEE--SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred cEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccc--cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccc
Confidence 86544422 2 46667766655433222221 1 111121 3344445555567899999976542 111
Q ss_pred -eccCCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCC-CCe--eeeeeccCCcccCCCCCCcccc
Q psy6442 160 -SFKGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTNV-GKT--YGLWKCIEGGLNNSLGLDSSGH 221 (231)
Q Consensus 160 -~~~~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~ 221 (231)
...+.....+.+ +|++. ++++-+..+.|..+++.. ++. ...+.. ...+.-++++.+|+
T Consensus 162 ~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~ 224 (306)
T 2p4o_A 162 SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGN 224 (306)
T ss_dssp SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCC
T ss_pred ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCC
Confidence 011112234555 88876 556667788999999864 432 122221 13455566776664
No 252
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.92 E-value=5.5e-05 Score=62.38 Aligned_cols=132 Identities=11% Similarity=-0.021 Sum_probs=92.0
Q ss_pred EEEEeCCC----CEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc-----------CCeEEEEECCCcceEEeee
Q psy6442 55 LISCAEDK----TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH-----------GSCVTFLDANSLELIKEHK 119 (231)
Q Consensus 55 l~s~s~D~----ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----------~~~i~~~d~~~~~~~~~~~ 119 (231)
+++-..++ +|-+.|..+++.+.++..+..+ .+.++||++.++++. ++.+.++|..+.+.++++.
T Consensus 35 yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~ 113 (368)
T 1mda_H 35 HITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE 113 (368)
T ss_dssp EEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE
T ss_pred EEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence 44444445 7889999999999999988777 899999999988874 4689999999999988876
Q ss_pred cc--------ceeEEEEEEecCCCCEEEEecC--CCeEEE--EeCCCcceeeeccCCCCCeeEEEEcCCC-CEEEEeeCC
Q psy6442 120 VP--------AQVHSASLLLNSERPIFVCGGE--DLKMYK--FDYSTGAEIESFKGHFGPIHCVKFSPDG-ELYASGSED 186 (231)
Q Consensus 120 ~~--------~~~~~~~~~~~~~~~~~~~g~~--d~~i~~--~d~~~~~~~~~~~~h~~~V~~v~~spd~-~~laS~s~d 186 (231)
.+ ..... +.++|+++.++.++. ...+.+ +|..+ +.++.-- +. ..+.|++ +.+++.+.|
T Consensus 114 v~~~~~~~~g~~P~~--ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~d 184 (368)
T 1mda_H 114 LPDAPRFSVGPRVHI--IGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCP 184 (368)
T ss_dssp ETTSCSCCBSCCTTS--EEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCT
T ss_pred CCCccccccCCCcce--EEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCC
Confidence 54 11222 334889988887764 356777 88876 3333210 11 1234544 355666778
Q ss_pred CcEEEEeCCC
Q psy6442 187 GTLRLWQTNV 196 (231)
Q Consensus 187 ~~v~iwd~~~ 196 (231)
+.+.+.++.+
T Consensus 185 g~~~~vd~~~ 194 (368)
T 1mda_H 185 ASLAASDLAA 194 (368)
T ss_dssp TSCEEEECCS
T ss_pred CCEEEEECcc
Confidence 8877777765
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.90 E-value=0.0013 Score=57.26 Aligned_cols=61 Identities=20% Similarity=0.079 Sum_probs=44.3
Q ss_pred CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442 144 DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 144 d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~ 205 (231)
++.++.+|..+++.+.+++. ..++.+..+...+.++..++.|+.|+.||.++|+.....+.
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCEEEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 57899999999998877652 23343333444456666789999999999999997765553
No 254
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.87 E-value=0.0019 Score=51.69 Aligned_cols=168 Identities=10% Similarity=0.062 Sum_probs=94.4
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCceEEEEe---------------------CCcceeEEEcc-CCCEEEEEcCCeEEEEEC
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAEVQKLEF---------------------GAVPNSLEISR-DGTTITVTHGSCVTFLDA 109 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~---------------------~~~~~~v~~~~-~~~~~~~~~~~~i~~~d~ 109 (231)
+..++++..++.|..||...++.. .+.. ...+..+++.+ ++..+++.....+..+|.
T Consensus 30 g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~ 108 (322)
T 2fp8_A 30 NKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGS 108 (322)
T ss_dssp CSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECT
T ss_pred CCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeC
Confidence 334677777888988987765432 2221 12467889997 565544444556777886
Q ss_pred CCcce--EEeeeccce-eEEEEEEecC-CCCEEEEecC-----------------CCeEEEEeCCCcceeeeccCCCCCe
Q psy6442 110 NSLEL--IKEHKVPAQ-VHSASLLLNS-ERPIFVCGGE-----------------DLKMYKFDYSTGAEIESFKGHFGPI 168 (231)
Q Consensus 110 ~~~~~--~~~~~~~~~-~~~~~~~~~~-~~~~~~~g~~-----------------d~~i~~~d~~~~~~~~~~~~h~~~V 168 (231)
..... +.......+ .....+...+ ++.+.++-.. .+.++.+|..+++...... .....
T Consensus 109 ~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p 187 (322)
T 2fp8_A 109 EGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVP 187 (322)
T ss_dssp TCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCC
T ss_pred CCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc-CCccC
Confidence 64432 111111111 0112233477 7776665322 3678888876654322111 12345
Q ss_pred eEEEEcCCCC-EEEEeeCCCcEEEEeCCCCC--eeeeeeccCCcccCCCCCCcccccc
Q psy6442 169 HCVKFSPDGE-LYASGSEDGTLRLWQTNVGK--TYGLWKCIEGGLNNSLGLDSSGHLN 223 (231)
Q Consensus 169 ~~v~~spd~~-~laS~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (231)
+.++++|+++ ++++-+..+.|..|++...+ ....+.. .++ +.-|.++.+|++|
T Consensus 188 ~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~ 243 (322)
T 2fp8_A 188 GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFW 243 (322)
T ss_dssp CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEE
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEE
Confidence 7899999998 45555677889999987532 1222222 223 5556777776544
No 255
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.71 E-value=0.0075 Score=52.87 Aligned_cols=102 Identities=12% Similarity=0.025 Sum_probs=66.1
Q ss_pred CCCCEEEEeCCCCCceEEEEeCCcc---------------------------------------eeEEEccCCCEEEEEc
Q psy6442 60 EDKTVRLWDVSASAEVQKLEFGAVP---------------------------------------NSLEISRDGTTITVTH 100 (231)
Q Consensus 60 ~D~ti~iwd~~~~~~~~~~~~~~~~---------------------------------------~~v~~~~~~~~~~~~~ 100 (231)
.++.|.-+|..+++.+-........ ...++.++...+++..
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~ 259 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT 259 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence 4899999999999988776654321 1235556666666654
Q ss_pred C-----------------CeEEEEECCCcceEEeeeccce------e--EEEEEEec-CCC---CEEEEecCCCeEEEEe
Q psy6442 101 G-----------------SCVTFLDANSLELIKEHKVPAQ------V--HSASLLLN-SER---PIFVCGGEDLKMYKFD 151 (231)
Q Consensus 101 ~-----------------~~i~~~d~~~~~~~~~~~~~~~------~--~~~~~~~~-~~~---~~~~~g~~d~~i~~~d 151 (231)
. +.+.-+|..+.+....+..... . ........ .++ ..++.++.++.++.+|
T Consensus 260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD 339 (599)
T 1w6s_A 260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLD 339 (599)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEE
Confidence 3 3677889888887766543211 0 01111111 345 4577788999999999
Q ss_pred CCCcceeeec
Q psy6442 152 YSTGAEIESF 161 (231)
Q Consensus 152 ~~~~~~~~~~ 161 (231)
..+++.+...
T Consensus 340 ~~tG~~lw~~ 349 (599)
T 1w6s_A 340 RTDGALVSAN 349 (599)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCCEeecc
Confidence 9999877554
No 256
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.70 E-value=0.0036 Score=55.58 Aligned_cols=152 Identities=12% Similarity=0.101 Sum_probs=96.9
Q ss_pred CCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcc--eeEEEcc--CCCEEEEEc-------CCeEEEEECCCcceEEeee
Q psy6442 51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP--NSLEISR--DGTTITVTH-------GSCVTFLDANSLELIKEHK 119 (231)
Q Consensus 51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~--~~v~~~~--~~~~~~~~~-------~~~i~~~d~~~~~~~~~~~ 119 (231)
.+.+|+.++.|+.|..+|..+++.+-........ ..+..+| .+..+++.. ++.+.-+|..+.+.+..+.
T Consensus 116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 3567888889999999999999988777653110 0111111 123444432 3678889999888876654
Q ss_pred cc-c-ee-------------------------EE---EEEEecCCCCEEEEecCCC-------------------eEEEE
Q psy6442 120 VP-A-QV-------------------------HS---ASLLLNSERPIFVCGGEDL-------------------KMYKF 150 (231)
Q Consensus 120 ~~-~-~~-------------------------~~---~~~~~~~~~~~~~~g~~d~-------------------~i~~~ 150 (231)
.. . +. .. .....++...++..+..++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 31 0 00 00 0122355566666666554 49999
Q ss_pred eCCCcceeeeccC--CC-------CCeeEEEEcCCCC---EEEEeeCCCcEEEEeCCCCCeeee
Q psy6442 151 DYSTGAEIESFKG--HF-------GPIHCVKFSPDGE---LYASGSEDGTLRLWQTNVGKTYGL 202 (231)
Q Consensus 151 d~~~~~~~~~~~~--h~-------~~V~~v~~spd~~---~laS~s~d~~v~iwd~~~~~~~~~ 202 (231)
|..+|+.+..++. |. .++....+..+|. .++.++.+|.+.++|..+|+....
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 339 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISA 339 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecc
Confidence 9999998876643 22 2333334444665 688999999999999999998643
No 257
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.68 E-value=0.0016 Score=54.71 Aligned_cols=141 Identities=13% Similarity=0.149 Sum_probs=84.9
Q ss_pred CEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcC-----C-eEEEEECCCcce-EEeeeccceeE
Q psy6442 53 TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG-----S-CVTFLDANSLEL-IKEHKVPAQVH 125 (231)
Q Consensus 53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~-~i~~~d~~~~~~-~~~~~~~~~~~ 125 (231)
..|+.+...+.|+.+|+..+...........+..+++++++..++++.. . .+..++...... ...........
T Consensus 150 g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~ 229 (430)
T 3tc9_A 150 NHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCN 229 (430)
T ss_dssp EEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCC
T ss_pred CeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCce
Confidence 4556555557788888877654443343456889999999997777643 1 233344322111 11111111112
Q ss_pred EEEEEecC-CCCEEEEecCCCeEEEEeCCCcceeeecc-CCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCC
Q psy6442 126 SASLLLNS-ERPIFVCGGEDLKMYKFDYSTGAEIESFK-GHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTN 195 (231)
Q Consensus 126 ~~~~~~~~-~~~~~~~g~~d~~i~~~d~~~~~~~~~~~-~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~ 195 (231)
.+. .++ ++.++++-...++|+.++...+....... +.....+.++|+|+++ ++++-...+.|..++..
T Consensus 230 gia--vdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 230 GAE--THPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp CEE--ECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEE--EeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 222 367 67777776677899999987654322111 1123467899999999 66777788889998764
No 258
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.67 E-value=0.0053 Score=53.62 Aligned_cols=61 Identities=20% Similarity=0.303 Sum_probs=43.8
Q ss_pred CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442 144 DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 144 d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~ 205 (231)
++.|..||+.+++.+.+.+.. .++..-.....+.++..++.|+.++.||.++|+.....+.
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 578999999999987665422 2333222233456777799999999999999997766654
No 259
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.59 E-value=0.026 Score=50.96 Aligned_cols=141 Identities=6% Similarity=0.028 Sum_probs=88.1
Q ss_pred EEEEEeCCCCEEEEeCCCCCceEEEEe--------CCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeee------
Q psy6442 54 RLISCAEDKTVRLWDVSASAEVQKLEF--------GAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHK------ 119 (231)
Q Consensus 54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~------ 119 (231)
.|..|..++-|..++...+... .+.. ...+.++...+++...+.+.++.+..++..+........
T Consensus 322 ~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 400 (795)
T 4a2l_A 322 GMWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESA 400 (795)
T ss_dssp CEEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC-----
T ss_pred CEEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcc
Confidence 4566777788888987654432 2221 234678888888887777777778888876544322110
Q ss_pred --c-cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeecc----CCCCCeeEEEEcCCCCEEEEeeCCCcEEEE
Q psy6442 120 --V-PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK----GHFGPIHCVKFSPDGELYASGSEDGTLRLW 192 (231)
Q Consensus 120 --~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~----~h~~~V~~v~~spd~~~laS~s~d~~v~iw 192 (231)
. ...+. ++..++++.++..|..++-+..+|..+++...-.. .+...|.++...++|++++... + -|.+|
T Consensus 401 ~~l~~~~v~--~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~ 476 (795)
T 4a2l_A 401 RGIGSNNIK--AVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRF 476 (795)
T ss_dssp -CCSCSCEE--EEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEE
T ss_pred cCCCCccEE--EEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEE
Confidence 0 11233 33335677635556666678899987765322211 1345799999999998777654 4 48999
Q ss_pred eCCCCCe
Q psy6442 193 QTNVGKT 199 (231)
Q Consensus 193 d~~~~~~ 199 (231)
|..+++.
T Consensus 477 ~~~~~~~ 483 (795)
T 4a2l_A 477 NPEQRSF 483 (795)
T ss_dssp ETTTTEE
T ss_pred eCCCCeE
Confidence 9887654
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.57 E-value=0.0054 Score=53.60 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=50.5
Q ss_pred CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCe-eEEEEcCCCC-E
Q psy6442 102 SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPI-HCVKFSPDGE-L 179 (231)
Q Consensus 102 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V-~~v~~spd~~-~ 179 (231)
+.+.-||..+.+.+.+.+...+.....+ ...+.++..++.|+.++.||.++++++.+++...+.. .-+.|..+|+ +
T Consensus 466 G~l~A~D~~tG~~~W~~~~~~~~~~g~~--~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVL--ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCE--EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ceEEEEECCCCCEEEEecCCCCCcccce--EeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence 5677788888777666554433221111 1134456668899999999999999998876433221 2266778886 4
Q ss_pred EEEee
Q psy6442 180 YASGS 184 (231)
Q Consensus 180 laS~s 184 (231)
+++.+
T Consensus 544 v~~~~ 548 (582)
T 1flg_A 544 LGVTV 548 (582)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 44443
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.54 E-value=0.021 Score=45.50 Aligned_cols=150 Identities=12% Similarity=0.035 Sum_probs=86.4
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCceEEEE-eC----CcceeEEEcc-CCCEEEEEcC------------------CeEEEE
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAEVQKLE-FG----AVPNSLEISR-DGTTITVTHG------------------SCVTFL 107 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~----~~~~~v~~~~-~~~~~~~~~~------------------~~i~~~ 107 (231)
+..|+.+...+.|..+|..++....... .. ..++.+++.+ ++...+.... +.+..+
T Consensus 91 ~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 91 NNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp TTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred CCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence 3456666555668888876543221111 11 2468899999 8876554322 457777
Q ss_pred ECCCcceEEeeeccceeEEEEEEecCCCCEE-EEecCCCeEEEEeCCCcc--eeeeccCCCCCeeEEEEcCCCCEEEEee
Q psy6442 108 DANSLELIKEHKVPAQVHSASLLLNSERPIF-VCGGEDLKMYKFDYSTGA--EIESFKGHFGPIHCVKFSPDGELYASGS 184 (231)
Q Consensus 108 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~~~d~~~~~--~~~~~~~h~~~V~~v~~spd~~~laS~s 184 (231)
|..+.+............. +..++++..+ ++-....+|+.+++.... ....+....+ ...+++.++|+++++..
T Consensus 171 d~~~~~~~~~~~~~~~p~g--ia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~ 247 (322)
T 2fp8_A 171 DPSTKETTLLLKELHVPGG--AEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS 247 (322)
T ss_dssp ETTTTEEEEEEEEESCCCE--EEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEE
T ss_pred eCCCCEEEEeccCCccCcc--eEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEec
Confidence 7765443221111111122 2347887754 444566889999986421 1111111123 78899999999887775
Q ss_pred C----------CCcEEEEeCCCCCeeeeeec
Q psy6442 185 E----------DGTLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 185 ~----------d~~v~iwd~~~~~~~~~~~~ 205 (231)
. .+.|..+|. .|+....+..
T Consensus 248 ~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~ 277 (322)
T 2fp8_A 248 EELDGNMHGRVDPKGIKFDE-FGNILEVIPL 277 (322)
T ss_dssp EETTSSTTSCEEEEEEEECT-TSCEEEEEEC
T ss_pred CcccccccCCCccEEEEECC-CCCEEEEEEC
Confidence 5 466888887 4777666654
No 262
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.53 E-value=0.0053 Score=55.27 Aligned_cols=155 Identities=14% Similarity=0.065 Sum_probs=85.7
Q ss_pred cEEEEEEC-CCCceeEeccccccccCCCEEEEEeCC----CCEEEEeCCCC-CceEEEEeCCcceeEEEccCCCEEEEE-
Q psy6442 27 CVWGVDIN-KDASKAASGAADFQAKNNTRLISCAED----KTVRLWDVSAS-AEVQKLEFGAVPNSLEISRDGTTITVT- 99 (231)
Q Consensus 27 ~V~~~~~~-~~~~~~~s~~~d~~~~~~~~l~s~s~D----~ti~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~- 99 (231)
.+....|+ |||++++- +.+.+ .+|+++|+.++ +.+.. .+......++|+||++.++..
T Consensus 175 ~~~~~~~S~PDG~~lAy--------------~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~ 239 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAF--------------SVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVT 239 (751)
T ss_dssp EEEEEEECTTTTCEEEE--------------EEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEE
T ss_pred EEeeeEecCCCCCEEEE--------------EEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEE
Confidence 46678888 88766542 22222 35999999988 53211 111224578999999876543
Q ss_pred cC-----CeEEEEECCCcce--EEeeeccceeEEEEEEecCCCCEEEEec---CCCeEEEEeCCCcc-ee--eec-cCCC
Q psy6442 100 HG-----SCVTFLDANSLEL--IKEHKVPAQVHSASLLLNSERPIFVCGG---EDLKMYKFDYSTGA-EI--ESF-KGHF 165 (231)
Q Consensus 100 ~~-----~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~d~~i~~~d~~~~~-~~--~~~-~~h~ 165 (231)
.+ ..|..+++.+... ...+..+.........++++++.++... ....|+++|+.++. .. ..+ .+..
T Consensus 240 ~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~ 319 (751)
T 2xe4_A 240 KDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK 319 (751)
T ss_dssp ECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred ECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence 32 2566677765431 1222211111123344588998776544 34568899987652 22 333 3444
Q ss_pred CCeeEEEEcCCCCEEEEeeCC--C--cEEEEeCCC
Q psy6442 166 GPIHCVKFSPDGELYASGSED--G--TLRLWQTNV 196 (231)
Q Consensus 166 ~~V~~v~~spd~~~laS~s~d--~--~v~iwd~~~ 196 (231)
.+..++.|+..+.+++....+ + .|..+++.+
T Consensus 320 ~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 320 GVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp TCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 566666665555555554443 3 455556654
No 263
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.50 E-value=0.027 Score=50.85 Aligned_cols=159 Identities=10% Similarity=0.069 Sum_probs=93.4
Q ss_pred EEEEeCCCCEEEEeCCCCCceEEEE----e-CCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeec------c-c
Q psy6442 55 LISCAEDKTVRLWDVSASAEVQKLE----F-GAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKV------P-A 122 (231)
Q Consensus 55 l~s~s~D~ti~iwd~~~~~~~~~~~----~-~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~------~-~ 122 (231)
|..+..++-+..+|..+++...... . ...+.++...+++...+.+. +.+..++..+......... + .
T Consensus 420 lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (795)
T 4a2l_A 420 VYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSK 498 (795)
T ss_dssp EEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCC
T ss_pred EEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCc
Confidence 6667777789999988765432211 1 23567788888887766665 5688888766543322111 1 1
Q ss_pred eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeecc-------CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442 123 QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK-------GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN 195 (231)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~-------~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~ 195 (231)
.+. ++..++++.+.+... .-+..||..++.. .+. .....|.++...++|++.++... -|..||..
T Consensus 499 ~i~--~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~--Gl~~~d~~ 570 (795)
T 4a2l_A 499 QIT--TLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE--GFYCFNEK 570 (795)
T ss_dssp CEE--EEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS--CEEEEETT
T ss_pred eEE--EEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC--CceeECCC
Confidence 233 333466776655443 4577888765543 221 13457899999999997776553 58889987
Q ss_pred CCCeeeeee---ccCCcccCCCCCCcccccc
Q psy6442 196 VGKTYGLWK---CIEGGLNNSLGLDSSGHLN 223 (231)
Q Consensus 196 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 223 (231)
+++.. ... +..+.....|..+.+|++|
T Consensus 571 ~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW 600 (795)
T 4a2l_A 571 DKQIK-RYNTTNGLPNNVVYGILEDSFGRLW 600 (795)
T ss_dssp TTEEE-EECGGGTCSCSCEEEEEECTTSCEE
T ss_pred CCcEE-EeCCCCCCchhheEEEEECCCCCEE
Confidence 76432 222 1222222335556666554
No 264
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.49 E-value=0.017 Score=46.59 Aligned_cols=143 Identities=7% Similarity=0.065 Sum_probs=93.4
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCceEEEEeCC---------cceeEEE---ccCCCEEEEEc--------------CCeEE
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGA---------VPNSLEI---SRDGTTITVTH--------------GSCVT 105 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~---------~~~~v~~---~~~~~~~~~~~--------------~~~i~ 105 (231)
+..+++.-..++|..||...+..... .++. .+..+.+ .|+++.+++.. ...+.
T Consensus 25 g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~ 103 (334)
T 2p9w_A 25 QVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFH 103 (334)
T ss_dssp TEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEE
T ss_pred CEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEE
Confidence 33445555789999999876654333 3322 3578899 68877666433 45688
Q ss_pred EEECC---CcceEEeeecc------------ceeEEEEEEecCCCCEEEEecCC-CeEEEEeCCCcceeeec------cC
Q psy6442 106 FLDAN---SLELIKEHKVP------------AQVHSASLLLNSERPIFVCGGED-LKMYKFDYSTGAEIESF------KG 163 (231)
Q Consensus 106 ~~d~~---~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~g~~d-~~i~~~d~~~~~~~~~~------~~ 163 (231)
.+|+. +.+.+...... ......-+..++++...++++.. +.|+.++.... .+..+ ..
T Consensus 104 ~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~ 182 (334)
T 2p9w_A 104 SFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGG 182 (334)
T ss_dssp EEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSS
T ss_pred EEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcc
Confidence 89988 66665554432 11123344458899988888888 88888887533 22221 11
Q ss_pred CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442 164 HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV 196 (231)
Q Consensus 164 h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~ 196 (231)
...-.+.++++|++.+|+.....+.+.-+|+..
T Consensus 183 ~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 183 QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 122367999999999887776699999999874
No 265
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.43 E-value=0.012 Score=51.51 Aligned_cols=148 Identities=13% Similarity=0.124 Sum_probs=93.2
Q ss_pred EEEEEeCCCCEEEEeCCCCCceEEEEeCC-----ccee-EEEccCCCEEEEEc-------CCeEEEEECCCcceEEeeec
Q psy6442 54 RLISCAEDKTVRLWDVSASAEVQKLEFGA-----VPNS-LEISRDGTTITVTH-------GSCVTFLDANSLELIKEHKV 120 (231)
Q Consensus 54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~~~-----~~~~-v~~~~~~~~~~~~~-------~~~i~~~d~~~~~~~~~~~~ 120 (231)
+|+.++.|+.+.-+|..+++.+-...... .+.+ -.+ .++ .+++.. ++.+.-+|..+.+.+..+..
T Consensus 123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 38888889999999999999887765432 1111 111 133 444432 57889999998888766554
Q ss_pred cceeEE-------------------------------------EEEEecCCCCEEEEecCC----------------CeE
Q psy6442 121 PAQVHS-------------------------------------ASLLLNSERPIFVCGGED----------------LKM 147 (231)
Q Consensus 121 ~~~~~~-------------------------------------~~~~~~~~~~~~~~g~~d----------------~~i 147 (231)
..+... .....++...++..+..+ ..|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 321100 011123444455555433 479
Q ss_pred EEEeCCCcceeeeccC--CC--------CCeeEEEEc-CCC---CEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442 148 YKFDYSTGAEIESFKG--HF--------GPIHCVKFS-PDG---ELYASGSEDGTLRLWQTNVGKTYGLWK 204 (231)
Q Consensus 148 ~~~d~~~~~~~~~~~~--h~--------~~V~~v~~s-pd~---~~laS~s~d~~v~iwd~~~~~~~~~~~ 204 (231)
..+|.++|+.+..++. |. .++. +... .+| ..++.++.+|.+.+.|..+|+.....+
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 9999999998766542 21 2222 2332 567 567889999999999999999765544
No 266
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.35 E-value=0.02 Score=51.55 Aligned_cols=162 Identities=12% Similarity=0.092 Sum_probs=91.8
Q ss_pred EEEEEeCCCCEEEEeCCCCCceEEEEe----CCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecc------ce
Q psy6442 54 RLISCAEDKTVRLWDVSASAEVQKLEF----GAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVP------AQ 123 (231)
Q Consensus 54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------~~ 123 (231)
.|..+..++.+..+|..+++.. .+.. ...+.++...+++...+.+. +.+..++..+.........+ ..
T Consensus 419 ~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (781)
T 3v9f_A 419 NLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENF 496 (781)
T ss_dssp CEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSC
T ss_pred CEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccce
Confidence 3555666677888887765432 2211 23567777777776655555 67888887664433222111 12
Q ss_pred eEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeecc---C-CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442 124 VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK---G-HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT 199 (231)
Q Consensus 124 ~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~---~-h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~ 199 (231)
+. ++..++++.+.+. ....-+..+|..+++. ..+. + ....|.++...++|++.++.. +|-|..||..+++.
T Consensus 497 i~--~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~ 571 (781)
T 3v9f_A 497 VR--SIAQDSEGRFWIG-TFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY 571 (781)
T ss_dssp EE--EEEECTTCCEEEE-ESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC
T ss_pred eE--EEEEcCCCCEEEE-EcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE
Confidence 33 3334667765554 3333477788765542 2222 1 235689999999998877655 66558899877653
Q ss_pred eeeee---ccCCcccCCCCCCcccccc
Q psy6442 200 YGLWK---CIEGGLNNSLGLDSSGHLN 223 (231)
Q Consensus 200 ~~~~~---~~~~~~~~~~~~~~~~~~~ 223 (231)
. ... +..+.....+..+.+|++|
T Consensus 572 ~-~~~~~~gl~~~~i~~i~~d~~g~lW 597 (781)
T 3v9f_A 572 Q-VFQRKEGLPNTHIRAISEDKNGNIW 597 (781)
T ss_dssp E-EECGGGTCSCCCCCEEEECSSSCEE
T ss_pred E-EccccCCCCCceEEEEEECCCCCEE
Confidence 2 222 2222233345556566554
No 267
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.29 E-value=0.0086 Score=50.31 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=81.8
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcC-C-----eEEEEECCCcce-EEeeecccee
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG-S-----CVTFLDANSLEL-IKEHKVPAQV 124 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~-----~i~~~d~~~~~~-~~~~~~~~~~ 124 (231)
+..|+.+...+.|+.+|..++...........+..+++++++. ++++.. + .+...+...... ..........
T Consensus 152 ~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P 230 (433)
T 4hw6_A 152 YDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGA 230 (433)
T ss_dssp TCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSB
T ss_pred CCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccccccCCC
Confidence 3556666555788889987766543333334689999999999 555432 1 233333221110 0111000111
Q ss_pred EEEEEEecC-CCCEEEEecCCCeEEEEeCCCcceeeec-c-CCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCC
Q psy6442 125 HSASLLLNS-ERPIFVCGGEDLKMYKFDYSTGAEIESF-K-GHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTN 195 (231)
Q Consensus 125 ~~~~~~~~~-~~~~~~~g~~d~~i~~~d~~~~~~~~~~-~-~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~ 195 (231)
.. +..++ ++.+.++-..+++|+.++..++.....+ . +....-..++|+|+++ ++++-...+.|+.++..
T Consensus 231 ~g--iavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 231 KT--CAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CC--CEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CE--EEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 11 22366 6666666667789999998766542222 1 1122234699999998 66767778889997754
No 268
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.27 E-value=0.057 Score=44.45 Aligned_cols=148 Identities=7% Similarity=0.014 Sum_probs=86.5
Q ss_pred EEEEEeCCCCEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEEEEEcC---CeEEEEECCCcceEEeeeccc-eeEEEE
Q psy6442 54 RLISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITVTHG---SCVTFLDANSLELIKEHKVPA-QVHSAS 128 (231)
Q Consensus 54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~-~~~~~~ 128 (231)
.+++-...+.|.+.++........+... ..+..+++.|.+..++++.. ..|..++.............. ....+.
T Consensus 173 lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla 252 (386)
T 3v65_B 173 LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLT 252 (386)
T ss_dssp EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEE
Confidence 3444455567777777544332222222 46889999998887777642 467777765433222221111 123334
Q ss_pred EEecCC-CCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442 129 LLLNSE-RPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK 204 (231)
Q Consensus 129 ~~~~~~-~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~ 204 (231)
+ ++. +.+..+-....+|+.+++........+.........|++ ..+.++.+-...+.|..++..+|+....+.
T Consensus 253 v--d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 253 I--DYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp E--EGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred E--eCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 4 543 444455555678999987543322222223345678888 455677777888899999977777655543
No 269
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.14 E-value=0.057 Score=41.93 Aligned_cols=185 Identities=12% Similarity=0.179 Sum_probs=108.2
Q ss_pred eeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC--CcceeEEEccCCCEEE
Q psy6442 20 TFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG--AVPNSLEISRDGTTIT 97 (231)
Q Consensus 20 ~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~ 97 (231)
.+.|=.+.+..++++|+++.+ ++....++.|...|.. ++.++.+.+. ..+..+++.+++.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L--------------~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTL--------------FSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVI 85 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEE--------------EEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEE
T ss_pred ECCCcccCcceeEEeCCCCEE--------------EEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEE
Confidence 344555678999998875432 4445667888888987 7888888765 3567888888887655
Q ss_pred EEc-CCeEEEEECCCcce---EEeeeccc-------eeEEEEEEecCCCCEEEEecCCC--eEEEEeCC-Ccceeeec--
Q psy6442 98 VTH-GSCVTFLDANSLEL---IKEHKVPA-------QVHSASLLLNSERPIFVCGGEDL--KMYKFDYS-TGAEIESF-- 161 (231)
Q Consensus 98 ~~~-~~~i~~~d~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~d~--~i~~~d~~-~~~~~~~~-- 161 (231)
+.. .+.+.+++...... +.....+. ....+ ..++.+..+..+.+.. .|+.|+-. ....+..+
T Consensus 86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGL--A~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~ 163 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGL--AYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKD 163 (255)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEE--EEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEEC
T ss_pred EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceE--EEeCCCCEEEEEECcCCceEEEEcccccCCceeeecc
Confidence 543 35677776544332 22232211 12333 3466665555554433 56666621 11111111
Q ss_pred -----cCCCCCeeEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCeeeeeeccCC--c------ccCCCCCCccccc
Q psy6442 162 -----KGHFGPIHCVKFSPD-GELYASGSEDGTLRLWQTNVGKTYGLWKCIEG--G------LNNSLGLDSSGHL 222 (231)
Q Consensus 162 -----~~h~~~V~~v~~spd-~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~ 222 (231)
..+...+.++++.|. +++++.....+.|-++|.. |++...+.-..+ + -+-=|+++++|.+
T Consensus 164 ~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l 237 (255)
T 3qqz_A 164 KALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI 237 (255)
T ss_dssp HHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE
T ss_pred hhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCE
Confidence 123445789999996 5566777778888999965 666655543211 1 2234567776653
No 270
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.07 E-value=0.12 Score=46.52 Aligned_cols=141 Identities=7% Similarity=0.128 Sum_probs=82.4
Q ss_pred CEEEEEeCCCCEEEEeCCCCCceEEE---Ee-CCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeee--c-cceeE
Q psy6442 53 TRLISCAEDKTVRLWDVSASAEVQKL---EF-GAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHK--V-PAQVH 125 (231)
Q Consensus 53 ~~l~s~s~D~ti~iwd~~~~~~~~~~---~~-~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~-~~~~~ 125 (231)
..|..|..++-|..+|..++...... .. ...+.++...+++...+.+.++.+..++..+.+...... . ...+.
T Consensus 374 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~ 453 (781)
T 3v9f_A 374 GKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVR 453 (781)
T ss_dssp SCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEE
T ss_pred CCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEE
Confidence 34566666677888987654322111 11 245677887878877766666778888876544322211 1 11233
Q ss_pred EEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCC-----CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442 126 SASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGH-----FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198 (231)
Q Consensus 126 ~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h-----~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~ 198 (231)
++..++++.+.+. .. .-+..+|..+++........ ...|.++...++|++.+.....| |..||..+++
T Consensus 454 --~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~ 526 (781)
T 3v9f_A 454 --VFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQL 526 (781)
T ss_dssp --EEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCE
T ss_pred --EEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCe
Confidence 3333556655444 34 45888887765432221111 35789999999998877554445 7778887654
No 271
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.99 E-value=0.062 Score=43.86 Aligned_cols=157 Identities=15% Similarity=0.196 Sum_probs=83.7
Q ss_pred CCCCEEEEeCCCC-CceEEEEeC--------CcceeEEEcc--CCC-EEEEE-c---CCeEEEEECCCc--ce--EEeee
Q psy6442 60 EDKTVRLWDVSAS-AEVQKLEFG--------AVPNSLEISR--DGT-TITVT-H---GSCVTFLDANSL--EL--IKEHK 119 (231)
Q Consensus 60 ~D~ti~iwd~~~~-~~~~~~~~~--------~~~~~v~~~~--~~~-~~~~~-~---~~~i~~~d~~~~--~~--~~~~~ 119 (231)
.+|.|.++|..+. .....+... -.+..+.+.+ ++. .+++. + +..+.+++.... .. +..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999998743 122333322 1455666655 454 34443 2 346666654332 21 22222
Q ss_pred ccc--eeEEEEEEecCCCCEEEEec-----------------CCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEE
Q psy6442 120 VPA--QVHSASLLLNSERPIFVCGG-----------------EDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELY 180 (231)
Q Consensus 120 ~~~--~~~~~~~~~~~~~~~~~~g~-----------------~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~l 180 (231)
.+. ..+...+ .+++.+.++.. ..+.++.+|.. + +..+...-...+.++||||++.|
T Consensus 161 g~~~~~pND~~v--~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~-~~~~~~~l~~pNGia~spDg~~l 235 (355)
T 3sre_A 161 HKLLPSVNDIVA--VGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D-VRVVAEGFDFANGINISPDGKYV 235 (355)
T ss_dssp CTTCSSEEEEEE--EETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C-CEEEEEEESSEEEEEECTTSSEE
T ss_pred cCCCCCCceEEE--eCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e-EEEeecCCcccCcceECCCCCEE
Confidence 211 2233333 56676665543 13567777753 2 22222233457899999999754
Q ss_pred -EEeeCCCcEEEEeCCC-CCee--eeeeccCCcccCCCCCCc-ccccc
Q psy6442 181 -ASGSEDGTLRLWQTNV-GKTY--GLWKCIEGGLNNSLGLDS-SGHLN 223 (231)
Q Consensus 181 -aS~s~d~~v~iwd~~~-~~~~--~~~~~~~~~~~~~~~~~~-~~~~~ 223 (231)
++-+..+.|..|++.. ++.. ..+. .+..+--+.++. +|..|
T Consensus 236 Yvadt~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~lw 281 (355)
T 3sre_A 236 YIAELLAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGDLW 281 (355)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCCEE
T ss_pred EEEeCCCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCcEE
Confidence 5556788899999853 4322 2332 245555566776 47655
No 272
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.93 E-value=0.021 Score=47.92 Aligned_cols=135 Identities=12% Similarity=0.136 Sum_probs=80.1
Q ss_pred cceeEEEcc-CCCEEEEEcC-CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecC-C----CeEEEEeCCCc
Q psy6442 83 VPNSLEISR-DGTTITVTHG-SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGE-D----LKMYKFDYSTG 155 (231)
Q Consensus 83 ~~~~v~~~~-~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-d----~~i~~~d~~~~ 155 (231)
.+..++++| ++..+++... ..|..+|................. .+.+++++..+..... . ..+..++.. +
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~--~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVR--TICWTHEADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEE--EEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcc--eEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 567889997 4555655543 678888887654433322222222 3344788874444332 1 234444432 2
Q ss_pred cee--eeccCCCCCeeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccc
Q psy6442 156 AEI--ESFKGHFGPIHCVKFSP-DGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGH 221 (231)
Q Consensus 156 ~~~--~~~~~h~~~V~~v~~sp-d~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (231)
... ..+. .......++++| ++.++++-..++.|..++...++.......-....++-|+++++|.
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~ 282 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGN 282 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSS
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCC
Confidence 211 2222 123467889999 7888888778889999999876543343332335677788888876
No 273
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.93 E-value=0.074 Score=45.39 Aligned_cols=139 Identities=13% Similarity=0.171 Sum_probs=81.7
Q ss_pred CEEEEEeCC-CCEEEEeCCCCCceEEEEeC----CcceeEEE-------ccCCCEEEEEcCC--------eEEEEECCC-
Q psy6442 53 TRLISCAED-KTVRLWDVSASAEVQKLEFG----AVPNSLEI-------SRDGTTITVTHGS--------CVTFLDANS- 111 (231)
Q Consensus 53 ~~l~s~s~D-~ti~iwd~~~~~~~~~~~~~----~~~~~v~~-------~~~~~~~~~~~~~--------~i~~~d~~~- 111 (231)
..|+.+..+ +.|++.|+..+.....+... ..+..+++ ++++..++++... .+.+++...
T Consensus 152 ~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~ 231 (496)
T 3kya_A 152 DHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNAD 231 (496)
T ss_dssp EEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTT
T ss_pred CEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCC
Confidence 345555443 56888888776655444332 24789999 9999977765432 255665333
Q ss_pred cceE-----Eee-eccceeEEEEEEecC-CCCEEEEecCCCeEEEEeCC-------Ccce-----------eeec--cCC
Q psy6442 112 LELI-----KEH-KVPAQVHSASLLLNS-ERPIFVCGGEDLKMYKFDYS-------TGAE-----------IESF--KGH 164 (231)
Q Consensus 112 ~~~~-----~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~d~~i~~~d~~-------~~~~-----------~~~~--~~h 164 (231)
.... +.. ... ....+ ..++ ++.++++-...+.|+.+|+. ++.. ...+ .+.
T Consensus 232 G~~~~~~~~~~v~~~~-~p~gi--avdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~ 308 (496)
T 3kya_A 232 GTFDDRSDIQLIAAYK-QCNGA--TIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIAD 308 (496)
T ss_dssp SCCSTTSCEEEEEEES-CCCCE--EECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSS
T ss_pred CceeecccceeeccCC-CceEE--EEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCC
Confidence 1111 111 111 12222 3366 56666677778899999987 4432 1111 122
Q ss_pred CCCeeEEEEcCCCC-EEEEeeCCCcEEEEeC
Q psy6442 165 FGPIHCVKFSPDGE-LYASGSEDGTLRLWQT 194 (231)
Q Consensus 165 ~~~V~~v~~spd~~-~laS~s~d~~v~iwd~ 194 (231)
......++|+|+|+ ++++=+....|+.++.
T Consensus 309 ~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 309 PSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp SSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 33457899999998 5666677888988554
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.78 E-value=0.14 Score=40.70 Aligned_cols=156 Identities=10% Similarity=-0.039 Sum_probs=88.1
Q ss_pred CCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc--CCeEEEEECCC----cceEEeeecc-ceeEEEEEEecC
Q psy6442 61 DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDANS----LELIKEHKVP-AQVHSASLLLNS 133 (231)
Q Consensus 61 D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~----~~~~~~~~~~-~~~~~~~~~~~~ 133 (231)
...|+..|+........+.....+..+++.+.+..++++. .+.|..++... .......... .....+.+ ++
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav--d~ 86 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV--DW 86 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE--ET
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEE--ee
Confidence 3568888988776655554445678999999877777654 46888888764 1111111111 12223333 43
Q ss_pred -CCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC-EEEEeeCC-CcEEEEeCCCCCeeeeeeccCCcc
Q psy6442 134 -ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE-LYASGSED-GTLRLWQTNVGKTYGLWKCIEGGL 210 (231)
Q Consensus 134 -~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~-~laS~s~d-~~v~iwd~~~~~~~~~~~~~~~~~ 210 (231)
.+.+.++-....+|.++++........+.........+++.|.+. ++.+-... +.|...+.. |+....+-...-..
T Consensus 87 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~ 165 (316)
T 1ijq_A 87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQW 165 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSC
T ss_pred cCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCC
Confidence 344455556678899988754332222222335678999999654 44544333 677777764 33332222123356
Q ss_pred cCCCCCCcc
Q psy6442 211 NNSLGLDSS 219 (231)
Q Consensus 211 ~~~~~~~~~ 219 (231)
++-|+++++
T Consensus 166 P~gla~d~~ 174 (316)
T 1ijq_A 166 PNGITLDLL 174 (316)
T ss_dssp EEEEEEETT
T ss_pred ceEEEEecc
Confidence 777777753
No 275
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.74 E-value=0.17 Score=40.95 Aligned_cols=148 Identities=6% Similarity=-0.016 Sum_probs=86.2
Q ss_pred CEEEEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCEEEEEcC---CeEEEEECCCcceEEeeeccc-eeEEE
Q psy6442 53 TRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVTHG---SCVTFLDANSLELIKEHKVPA-QVHSA 127 (231)
Q Consensus 53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~-~~~~~ 127 (231)
..+++-...+.|.+.++........+.. ...+..+++.|.+..++++.. ..|..++.............. ....+
T Consensus 129 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGl 208 (349)
T 3v64_C 129 KLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGL 208 (349)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEE
T ss_pred eEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceE
Confidence 3344555567788888765443222221 246889999998777776642 567777765433222211111 22333
Q ss_pred EEEecCCCC-EEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442 128 SLLLNSERP-IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW 203 (231)
Q Consensus 128 ~~~~~~~~~-~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~ 203 (231)
++ ++.+. +..+-....+|+.+++........+.........+++ ..+.++.+-...+.|...+..+|+....+
T Consensus 209 a~--d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 209 TI--DYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp EE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EE--eCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 44 65444 4445455678999987543222222223445678888 45667777778888988887677655444
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.70 E-value=0.056 Score=47.70 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=41.9
Q ss_pred CCCCEEEEecCCC-----------eEEEEeCCCcceeeec--cCCCCCe-eEEEEcCCCCEEEEeeCC-----------C
Q psy6442 133 SERPIFVCGGEDL-----------KMYKFDYSTGAEIESF--KGHFGPI-HCVKFSPDGELYASGSED-----------G 187 (231)
Q Consensus 133 ~~~~~~~~g~~d~-----------~i~~~d~~~~~~~~~~--~~h~~~V-~~v~~spd~~~laS~s~d-----------~ 187 (231)
.++.+++.|+.+. .+.+||..+..-.... ..+.... .++...|++++++.++.+ .
T Consensus 409 ~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~ 488 (656)
T 1k3i_A 409 VKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVF 488 (656)
T ss_dssp TTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCC
T ss_pred CCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCccc
Confidence 4677888887532 6778887665422221 1122222 455677899999999864 5
Q ss_pred cEEEEeCCCC
Q psy6442 188 TLRLWQTNVG 197 (231)
Q Consensus 188 ~v~iwd~~~~ 197 (231)
.+.+||..+.
T Consensus 489 ~v~~ydp~t~ 498 (656)
T 1k3i_A 489 TPEIYVPEQD 498 (656)
T ss_dssp CCEEEEGGGT
T ss_pred ceEEEcCCCC
Confidence 6899998764
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.70 E-value=0.055 Score=48.64 Aligned_cols=170 Identities=11% Similarity=0.036 Sum_probs=84.2
Q ss_pred CceeeeccCC-CeEee-eecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCC-----CCEEEEeCCCCCce--E
Q psy6442 6 KPMLRQGDTG-DWIGT-FEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAED-----KTVRLWDVSASAEV--Q 76 (231)
Q Consensus 6 ~~~~~~~~~g-~~i~~-l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D-----~ti~iwd~~~~~~~--~ 76 (231)
++++++..+| +.+.. +.. ....+.|+||++.++.. ..| ..|..+++.++... .
T Consensus 202 ~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~---------------~~d~~~~~~~v~~~~lgt~~~~~~l 263 (751)
T 2xe4_A 202 TIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYV---------------TKDETLRENKVWRHVMGKLQSEDVC 263 (751)
T ss_dssp EEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEE---------------EECTTCCEEEEEEEETTSCGGGCEE
T ss_pred EEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEE---------------EECCCCCCCEEEEEECCCCchhcEE
Confidence 4777777777 53221 211 12356788876554332 222 25777888776432 2
Q ss_pred EEEe--CCcceeEEEccCCCEEEEEc----CCeEEEEECCCcc-eE--EeeeccceeEEEEEEecCCCCEEEEecCC---
Q psy6442 77 KLEF--GAVPNSLEISRDGTTITVTH----GSCVTFLDANSLE-LI--KEHKVPAQVHSASLLLNSERPIFVCGGED--- 144 (231)
Q Consensus 77 ~~~~--~~~~~~v~~~~~~~~~~~~~----~~~i~~~d~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~d--- 144 (231)
.... ......+.++||++.++... ...+.++|..+.. .. +..............++.++.+++....+
T Consensus 264 v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~ 343 (751)
T 2xe4_A 264 LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAV 343 (751)
T ss_dssp EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCT
T ss_pred EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCC
Confidence 2221 12345778999999876532 2467778876542 11 21111110001112112233344444332
Q ss_pred -CeEEEEeCCCcceeee-ccCCCC--CeeEEEEcCCCCEEEEeeCCCcEEE--EeC
Q psy6442 145 -LKMYKFDYSTGAEIES-FKGHFG--PIHCVKFSPDGELYASGSEDGTLRL--WQT 194 (231)
Q Consensus 145 -~~i~~~d~~~~~~~~~-~~~h~~--~V~~v~~spd~~~laS~s~d~~v~i--wd~ 194 (231)
..|+.++..++..... +..|.. .+..+.+. .+.++++...++..+| +++
T Consensus 344 ~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 344 NHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred CcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 4788888764322222 222333 34455554 2346677777886554 454
No 278
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.67 E-value=0.21 Score=41.06 Aligned_cols=141 Identities=9% Similarity=0.002 Sum_probs=80.8
Q ss_pred EEEEeCCCCEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeEEEEEE
Q psy6442 55 LISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVHSASLL 130 (231)
Q Consensus 55 l~s~s~D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~ 130 (231)
+++-...+.|..+++..+.....+... ..+..+++.+.+..++++. .+.|.+.+............. .....+.+
T Consensus 131 y~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giav- 209 (386)
T 3v65_B 131 FWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL- 209 (386)
T ss_dssp EEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEE-
T ss_pred EEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEE-
Confidence 444445677888887765433322222 3578899998777776654 357777776543322222211 12233333
Q ss_pred ecCCCC-EEEEecCC-CeEEEEeCCCcceeeeccCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCC
Q psy6442 131 LNSERP-IFVCGGED-LKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVG 197 (231)
Q Consensus 131 ~~~~~~-~~~~g~~d-~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~ 197 (231)
+|.+. +..+-... .+|+.+++............-...+.|+++|++ +++.+-+..+.|..+++...
T Consensus 210 -dp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 210 -HPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp -ETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred -EcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 55444 44444344 788888875432222222233457899999865 55666677788999987543
No 279
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.58 E-value=0.22 Score=40.27 Aligned_cols=140 Identities=9% Similarity=0.012 Sum_probs=82.2
Q ss_pred EEEEEeCCCCEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeEEEEE
Q psy6442 54 RLISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVHSASL 129 (231)
Q Consensus 54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~ 129 (231)
.+++-...+.|..+++........+... ..+..+++.+.+..++++. .+.|...+............. .....+.+
T Consensus 87 ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iav 166 (349)
T 3v64_C 87 VFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 166 (349)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEE
T ss_pred EEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEE
Confidence 3444445677888887765433333222 4578899998777776653 357888887654322222111 12233333
Q ss_pred EecCC-CCEEEEecCC-CeEEEEeCCCcceeeec-cCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCC
Q psy6442 130 LLNSE-RPIFVCGGED-LKMYKFDYSTGAEIESF-KGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNV 196 (231)
Q Consensus 130 ~~~~~-~~~~~~g~~d-~~i~~~d~~~~~~~~~~-~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~ 196 (231)
+|. +.+..+-... .+|+.+++.... ...+ ...-...+.++++|++ +++.+-+..+.|..+++..
T Consensus 167 --dp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 167 --HPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp --ETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred --ecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 654 4444444444 789888875332 2222 2223457899999865 4556666778899998754
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.38 E-value=0.28 Score=39.17 Aligned_cols=139 Identities=10% Similarity=0.023 Sum_probs=79.1
Q ss_pred EEEEeCCCCEEEEeCCCCCceE-EEEe-CCcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeEEEEE
Q psy6442 55 LISCAEDKTVRLWDVSASAEVQ-KLEF-GAVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVHSASL 129 (231)
Q Consensus 55 l~s~s~D~ti~iwd~~~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~ 129 (231)
+.+=...+.|..+++..+.... .+.. -..+..+++.+.+..++++. .+.|.+++............. .....+.+
T Consensus 50 yw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giav 129 (318)
T 3sov_A 50 YWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIAL 129 (318)
T ss_dssp EEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred EEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEE
Confidence 4454556778888876553222 2222 24577899998777776653 468888887653322221111 12233333
Q ss_pred EecCC-CCEEEEe-cCCCeEEEEeCCCcceeeec-cCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCC
Q psy6442 130 LLNSE-RPIFVCG-GEDLKMYKFDYSTGAEIESF-KGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNV 196 (231)
Q Consensus 130 ~~~~~-~~~~~~g-~~d~~i~~~d~~~~~~~~~~-~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~ 196 (231)
++. +.+..+- +...+|+.+++.- .....+ ...-...+.++++|++ +++.+=+..+.|..+++..
T Consensus 130 --dp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 130 --DPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp --EGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred --eCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 554 3333333 2357888888753 222222 2223456899999965 4556667788899998853
No 281
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.23 E-value=0.07 Score=47.61 Aligned_cols=137 Identities=12% Similarity=0.043 Sum_probs=72.6
Q ss_pred EEeCCCCEEEEeCCC----CCceEEEEe-CCcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeEEEE
Q psy6442 57 SCAEDKTVRLWDVSA----SAEVQKLEF-GAVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVHSAS 128 (231)
Q Consensus 57 s~s~D~ti~iwd~~~----~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~~ 128 (231)
+-...+.|+.+++.. ......+.. ...+..+++.+.+..|+++. .+.|.+++............. .....+.
T Consensus 423 sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~gia 502 (699)
T 1n7d_A 423 SDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIV 502 (699)
T ss_dssp CCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEE
T ss_pred EecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEE
Confidence 333456788887764 111111111 12466788886666666653 467888887654332222211 1122223
Q ss_pred EEecCCCC-EEEEecC-CCeEEEEeCCCcceeeec-cCCCCCeeEEEEcCC-CCEEEEeeCCCcEEEEeCCC
Q psy6442 129 LLLNSERP-IFVCGGE-DLKMYKFDYSTGAEIESF-KGHFGPIHCVKFSPD-GELYASGSEDGTLRLWQTNV 196 (231)
Q Consensus 129 ~~~~~~~~-~~~~g~~-d~~i~~~d~~~~~~~~~~-~~h~~~V~~v~~spd-~~~laS~s~d~~v~iwd~~~ 196 (231)
+ ++.+. ++.+-.. ..+|+.+++.... ...+ ...-...+.|+|+|+ ++++++-+..+.|..+++..
T Consensus 503 v--Dp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 503 V--DPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp C--CSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred E--ccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 3 55433 3333322 2678777764322 2222 122234678999997 56667777888899999854
No 282
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.20 E-value=0.35 Score=38.44 Aligned_cols=175 Identities=11% Similarity=0.060 Sum_probs=99.0
Q ss_pred CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC---CceEEE-E
Q psy6442 4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS---AEVQKL-E 79 (231)
Q Consensus 4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~---~~~~~~-~ 79 (231)
...|+..+..+++....+.. -....+++|.+.++. .+++-...+.|..+++... .....+ .
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~--------------ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~ 73 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNR--------------IYWSDLSQRMICSTQLDRAHGVSSYDTVIS 73 (316)
T ss_dssp BSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTE--------------EEEEETTTTEEEEEEC--------CEEEEC
T ss_pred CCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCE--------------EEEEECCCCcEEEEECCCCCCCcccEEEEe
Confidence 45677777776665544332 345677888765433 2344445677888887651 222222 2
Q ss_pred eC-CcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeEEEEEEecCC-CCEEEEecCC-CeEEEEeCC
Q psy6442 80 FG-AVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSE-RPIFVCGGED-LKMYKFDYS 153 (231)
Q Consensus 80 ~~-~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~g~~d-~~i~~~d~~ 153 (231)
.. ..+..+++.+.+..++++. .+.|.+++............. .....+. .+|. +.++.+.... ++|+.+++.
T Consensus 74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~ia--vdp~~g~ly~~d~~~~~~I~~~~~d 151 (316)
T 1ijq_A 74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIV--VDPVHGFMYWTDWGTPAKIKKGGLN 151 (316)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEE--EETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEE--eCCCCCEEEEEccCCCCeEEEEcCC
Confidence 11 4578899988777776653 468888887654332222211 1223333 3654 4444443333 688888874
Q ss_pred Ccceeeec-cCCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCC
Q psy6442 154 TGAEIESF-KGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTNV 196 (231)
Q Consensus 154 ~~~~~~~~-~~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~~ 196 (231)
+.....+ ...-...+.++++|++. ++.+-+..+.|..+|+..
T Consensus 152 -G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 152 -GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp -SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 3322222 22234578999998754 556666778899999864
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.15 E-value=0.13 Score=43.04 Aligned_cols=136 Identities=10% Similarity=0.075 Sum_probs=77.6
Q ss_pred cceeEEEccC--CCEEEEEcC-CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCC----CeEEEEeCCCc
Q psy6442 83 VPNSLEISRD--GTTITVTHG-SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGED----LKMYKFDYSTG 155 (231)
Q Consensus 83 ~~~~v~~~~~--~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d----~~i~~~d~~~~ 155 (231)
.+..+++.|+ ...++++.. ..|+.++..+............... +.+++++.++++.... ..+..++...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~g--iavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCAD--VNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEE--EEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccE--EEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 4678999984 445655543 7888888866554433322222333 3347777755554321 12444443222
Q ss_pred cee-eeccCCCCCeeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCe-eeeeeccCCcccCCCCCCcccc
Q psy6442 156 AEI-ESFKGHFGPIHCVKFSP-DGELYASGSEDGTLRLWQTNVGKT-YGLWKCIEGGLNNSLGLDSSGH 221 (231)
Q Consensus 156 ~~~-~~~~~h~~~V~~v~~sp-d~~~laS~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 221 (231)
... ..+. .......++++| ++.++++-..++.|+.++..+++. ......-...+...|+++++|.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~ 285 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD 285 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC
Confidence 110 1111 223467789999 788888777888999999987876 3333322233333477777664
No 284
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.05 E-value=0.23 Score=41.53 Aligned_cols=106 Identities=14% Similarity=0.190 Sum_probs=69.7
Q ss_pred EEccCCCEEEEEcCCeEEEEECCCcceEEeeecc----c-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc------
Q psy6442 88 EISRDGTTITVTHGSCVTFLDANSLELIKEHKVP----A-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA------ 156 (231)
Q Consensus 88 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~------ 156 (231)
..+.++..+++..++.++..+..+....+..+.+ . .+.. +..+|.|.+++.-+ +..|.+..+..+.
T Consensus 27 ~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~q--lvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 27 FSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFH--VISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCE--EEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred EEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeE--EEECCCCCEEEEec-CCeEEEEEecCccccCccc
Confidence 3456677777778888888887644334444443 2 2333 33489999888764 4466666665221
Q ss_pred ------eeeeccC------CCCCeeEEEEcCC---CCEEEEeeCCCcEEEEeCCC
Q psy6442 157 ------EIESFKG------HFGPIHCVKFSPD---GELYASGSEDGTLRLWQTNV 196 (231)
Q Consensus 157 ------~~~~~~~------h~~~V~~v~~spd---~~~laS~s~d~~v~iwd~~~ 196 (231)
....+.- ...+|..+.|+|- +..|+.-..|++||+||+..
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 1112211 2578999999995 46899999999999999976
No 285
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.92 E-value=0.17 Score=45.10 Aligned_cols=148 Identities=9% Similarity=0.024 Sum_probs=82.3
Q ss_pred CEEEEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCEEEEEcC---CeEEEEECCCcceEEeeeccc-eeEEE
Q psy6442 53 TRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVTHG---SCVTFLDANSLELIKEHKVPA-QVHSA 127 (231)
Q Consensus 53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~-~~~~~ 127 (231)
..+++-...+.|.+.++........+.. ...+..+++.|.+..++++.. +.|..+++............. ....+
T Consensus 466 ~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGl 545 (699)
T 1n7d_A 466 NIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 545 (699)
T ss_dssp BCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCE
T ss_pred cEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEE
Confidence 3344445567888888765443322222 246789999997776666542 456665543322111111111 12223
Q ss_pred EEEecCC-CCEEEEecCCCeEEEEeCCCcceeeecc--CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442 128 SLLLNSE-RPIFVCGGEDLKMYKFDYSTGAEIESFK--GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW 203 (231)
Q Consensus 128 ~~~~~~~-~~~~~~g~~d~~i~~~d~~~~~~~~~~~--~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~ 203 (231)
.+ +++ +.+.++-....+|+.+++........+. +.......|++..+ .++.+....+.|..++..+|+....+
T Consensus 546 av--d~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 546 TL--DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp EE--CTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred EE--eccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence 33 654 4455555566789999885422211111 12233456667655 57777788899999998888766554
No 286
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.89 E-value=0.47 Score=37.27 Aligned_cols=114 Identities=13% Similarity=0.107 Sum_probs=69.6
Q ss_pred CCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecC--CCeEEEEeCCCcce
Q psy6442 81 GAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGE--DLKMYKFDYSTGAE 157 (231)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--d~~i~~~d~~~~~~ 157 (231)
...+..+++++++...++. ..+.|..+|.... .......+..... +...+++.++++... ...|..++..+++.
T Consensus 31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~g--ia~~~dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 31 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSG--LAFTSNGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEE--EEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCcee--EEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence 4567889999998855544 3578888887653 3333333333333 334778876665433 23577788777664
Q ss_pred eeecc-CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442 158 IESFK-GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG 197 (231)
Q Consensus 158 ~~~~~-~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~ 197 (231)
..... ........++..+++..+++-..++.|..+|...+
T Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence 32211 12233456666677666776667888888897764
No 287
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=95.67 E-value=0.44 Score=36.90 Aligned_cols=111 Identities=12% Similarity=0.194 Sum_probs=69.2
Q ss_pred CcceeEEEccCCCEEEE-E-cCCeEEEEECCCcceEEeeecc--ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce
Q psy6442 82 AVPNSLEISRDGTTITV-T-HGSCVTFLDANSLELIKEHKVP--AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE 157 (231)
Q Consensus 82 ~~~~~v~~~~~~~~~~~-~-~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~ 157 (231)
..+..+++.|++..+++ . ..+.|..+|.. .+.++.+... .....+.+ .+++.++++.-.+..+.++++.....
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~--~~~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEY--IGDNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEE--CSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEE--eCCCEEEEEECCCCcEEEEEcCCCCe
Confidence 35778999998776665 3 34578888887 6677776543 23333333 56777666655667888887754321
Q ss_pred ---eeec--c----CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442 158 ---IESF--K----GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN 195 (231)
Q Consensus 158 ---~~~~--~----~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~ 195 (231)
+... . ......-.++|+|+++.|..+.+.....||.+.
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 1221 1 123345789999998766666655555666653
No 288
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.62 E-value=0.83 Score=38.19 Aligned_cols=142 Identities=18% Similarity=0.234 Sum_probs=89.9
Q ss_pred cCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC-----cceeEEEccCCCEEEEEcCCeEEEEECCCcc-----------
Q psy6442 50 KNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA-----VPNSLEISRDGTTITVTHGSCVTFLDANSLE----------- 113 (231)
Q Consensus 50 ~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~----------- 113 (231)
+++..++.+- ++.||.-++..+..-+.+..+. .+..+..+|+|.++++.....+.+..+....
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence 4566677664 5888888887655555666542 5778999999999999888899998876221
Q ss_pred -eEEeeecc-------ceeEEEEEEecCC---CCEEEEecCCCeEEEEeCCCccee-eec---------cCCCCCeeEEE
Q psy6442 114 -LIKEHKVP-------AQVHSASLLLNSE---RPIFVCGGEDLKMYKFDYSTGAEI-ESF---------KGHFGPIHCVK 172 (231)
Q Consensus 114 -~~~~~~~~-------~~~~~~~~~~~~~---~~~~~~g~~d~~i~~~d~~~~~~~-~~~---------~~h~~~V~~v~ 172 (231)
..+.+... .++.. +.++|- +..++.=..|..|++||+...... ..+ ..+...|.+++
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~q--VlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKK--VLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEE--EEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred cceeEEEcCCcccCCCCceeE--EEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence 11222221 22333 334654 446777788999999999753211 122 12335688899
Q ss_pred EcCCCCEE--EEeeCCCcEEEEeC
Q psy6442 173 FSPDGELY--ASGSEDGTLRLWQT 194 (231)
Q Consensus 173 ~spd~~~l--aS~s~d~~v~iwd~ 194 (231)
|.+++-.| ++.++.|.|.-...
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAlcP 210 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAFYP 210 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEESS
T ss_pred EcCCCcEEEEEecCCCCCEEEECC
Confidence 99977533 33456676654443
No 289
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.58 E-value=1.1 Score=39.38 Aligned_cols=146 Identities=5% Similarity=-0.052 Sum_probs=85.3
Q ss_pred EEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEEc---CCeEEEEECCCcceEEeeeccceeEEEEE
Q psy6442 54 RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTH---GSCVTFLDANSLELIKEHKVPAQVHSASL 129 (231)
Q Consensus 54 ~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 129 (231)
.+++-...+.|.+.++........+. --..+..+++.|....++.+. ...|...+............-.....+.+
T Consensus 94 LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~Glal 173 (628)
T 4a0p_A 94 LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTI 173 (628)
T ss_dssp EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEE
T ss_pred EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEE
Confidence 34444455678888876443322221 124688999999777777765 34677776654332222221112233333
Q ss_pred EecCCCCE-EEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442 130 LLNSERPI-FVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW 203 (231)
Q Consensus 130 ~~~~~~~~-~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~ 203 (231)
++.+.. ..+-....+|+.+|+..... ..+.........+++.. +.++.+-...+.|...|..+|+....+
T Consensus 174 --D~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 174 --DYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp --ETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred --ccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 655444 44445567899998854332 23333334456788876 567777777899999998888765444
No 290
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.57 E-value=0.76 Score=37.35 Aligned_cols=139 Identities=10% Similarity=0.178 Sum_probs=87.4
Q ss_pred CEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCC----C---EEEEE--c--CCeEEEEECC--CcceEEeee
Q psy6442 53 TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDG----T---TITVT--H--GSCVTFLDAN--SLELIKEHK 119 (231)
Q Consensus 53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~----~---~~~~~--~--~~~i~~~d~~--~~~~~~~~~ 119 (231)
..++.....+-+.+||+ .++.+..+.. ..++.|...|+- + .++++ . .+.+.++++. +.. +....
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~ 117 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMT 117 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECS
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecc
Confidence 45666777788999999 7888777654 566777766632 2 23343 2 4689999653 322 33331
Q ss_pred c---c-----ceeEEEEEEecC-CCC-EEEEecCCCeEEEEeCC-------CcceeeeccCCCCCeeEEEEcCCCCEEEE
Q psy6442 120 V---P-----AQVHSASLLLNS-ERP-IFVCGGEDLKMYKFDYS-------TGAEIESFKGHFGPIHCVKFSPDGELYAS 182 (231)
Q Consensus 120 ~---~-----~~~~~~~~~~~~-~~~-~~~~g~~d~~i~~~d~~-------~~~~~~~~~~h~~~V~~v~~spd~~~laS 182 (231)
. + .....+++.-++ .+. ++.....++.+..|++. +.+.+++|.- ...+-.+...+....|..
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEE
Confidence 1 1 222223443244 343 45566777999888872 3355666653 357888999998888888
Q ss_pred eeCCCcEEEEeCC
Q psy6442 183 GSEDGTLRLWQTN 195 (231)
Q Consensus 183 ~s~d~~v~iwd~~ 195 (231)
+-++.-|..++.+
T Consensus 197 ~eEd~GIw~~da~ 209 (355)
T 3amr_A 197 AEEDEAIWKFSAE 209 (355)
T ss_dssp EETTTEEEEEECS
T ss_pred ecccceEEEEeCC
Confidence 8888777666754
No 291
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.11 E-value=0.61 Score=35.41 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=71.4
Q ss_pred CEEEEEeCCCCEEEEeCCCCC------ceEEEEeC--CcceeEEEccCCCEEEEEcCCeEEEEECCCcce------EEee
Q psy6442 53 TRLISCAEDKTVRLWDVSASA------EVQKLEFG--AVPNSLEISRDGTTITVTHGSCVTFLDANSLEL------IKEH 118 (231)
Q Consensus 53 ~~l~s~s~D~ti~iwd~~~~~------~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~------~~~~ 118 (231)
..|+....| +++.=-..+.. ....+--. .....++++|++.+-.+ .++.+...+..+... -..+
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~I 82 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKI 82 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEe
Confidence 346666666 54443333332 12233221 35679999999986666 666666666533111 0111
Q ss_pred ec-c-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCccee-----eec--cCCCCCeeEEEEcCCCCEEEEeeCCCcE
Q psy6442 119 KV-P-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI-----ESF--KGHFGPIHCVKFSPDGELYASGSEDGTL 189 (231)
Q Consensus 119 ~~-~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~-----~~~--~~h~~~V~~v~~spd~~~laS~s~d~~v 189 (231)
.. . .... .+.+++++.+.++ .|+.|+.++..+...- .+. .+-=..+..|.|.|+|.+.|.. |+.+
T Consensus 83 G~~Gw~~F~--a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 83 GNGGWNQFQ--FLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp ECSCGGGCS--EEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred cccccccce--EEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 10 0 0112 3345888887777 5699999886442211 011 1011467999999999988877 6664
No 292
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.10 E-value=0.99 Score=35.93 Aligned_cols=109 Identities=16% Similarity=0.157 Sum_probs=57.5
Q ss_pred CcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecc---ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce-
Q psy6442 82 AVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVP---AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE- 157 (231)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~- 157 (231)
..+..+.+.+++..+++..++.+.+.+....+.......+ .......+...+++.+++.+. ++.++. ....++.
T Consensus 205 ~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~~-S~DgG~tW 282 (327)
T 2xbg_A 205 RRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALLC-SQDGGQTW 282 (327)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEEE-ESSTTSSC
T ss_pred CccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEEE-eCCCCccc
Confidence 4567788888888777777776665532222222222222 111112233355666666554 565533 2222322
Q ss_pred --eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442 158 --IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ 193 (231)
Q Consensus 158 --~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd 193 (231)
+.....+...+.++.|.+++. ++.++.+|.|.-++
T Consensus 283 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 283 QQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp EECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred EEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 221112345678899986654 55667788776555
No 293
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=94.80 E-value=1.7 Score=37.07 Aligned_cols=148 Identities=11% Similarity=0.115 Sum_probs=86.0
Q ss_pred CCEEEEEeCCCCEEEEeCC-------CCCc-----------eEE-EEe--CCcceeEEEccCCCEEEEEc--CCeEEEEE
Q psy6442 52 NTRLISCAEDKTVRLWDVS-------ASAE-----------VQK-LEF--GAVPNSLEISRDGTTITVTH--GSCVTFLD 108 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~-------~~~~-----------~~~-~~~--~~~~~~v~~~~~~~~~~~~~--~~~i~~~d 108 (231)
+..+++-..++.|..+|+. ++.. ... ... ...++.++++|++..++++. ...|+.++
T Consensus 259 g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid 338 (496)
T 3kya_A 259 GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSD 338 (496)
T ss_dssp CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence 4445566677889999987 4543 112 223 24578999999999777663 45777755
Q ss_pred C--CCcce-----EEee-e-------------ccceeEEEEEEec------CCCCEEEEecCCCeEEEEeCCCcceeeec
Q psy6442 109 A--NSLEL-----IKEH-K-------------VPAQVHSASLLLN------SERPIFVCGGEDLKMYKFDYSTGAEIESF 161 (231)
Q Consensus 109 ~--~~~~~-----~~~~-~-------------~~~~~~~~~~~~~------~~~~~~~~g~~d~~i~~~d~~~~~~~~~~ 161 (231)
. ..... +... . +..+...+.. .+ +.+.+.++-....+|+.++ .++. +.++
T Consensus 339 ~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~v-d~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~Ti 415 (496)
T 3kya_A 339 YDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFV-KNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTY 415 (496)
T ss_dssp EETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEE-ECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEE
T ss_pred cCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEE-ccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEE
Confidence 3 32211 1110 0 0011101122 11 4556666666778899998 3453 3333
Q ss_pred cCC------------------------CCCeeEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442 162 KGH------------------------FGPIHCVKFSPD-GELYASGSEDGTLRLWQTNVGKTYGL 202 (231)
Q Consensus 162 ~~h------------------------~~~V~~v~~spd-~~~laS~s~d~~v~iwd~~~~~~~~~ 202 (231)
-|. -.....|+++++ +.++++=+.+..||.+++......+.
T Consensus 416 aG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~ 481 (496)
T 3kya_A 416 AGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG 481 (496)
T ss_dssp EESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred ecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence 211 123678999997 88888888889999999877665543
No 294
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=94.76 E-value=1.4 Score=36.16 Aligned_cols=141 Identities=11% Similarity=0.030 Sum_probs=77.9
Q ss_pred EEEEeCCCCEEEEeCCCC----CceEEEE-eCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeEE
Q psy6442 55 LISCAEDKTVRLWDVSAS----AEVQKLE-FGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVHS 126 (231)
Q Consensus 55 l~s~s~D~ti~iwd~~~~----~~~~~~~-~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~ 126 (231)
+.+-...+.|..+++... .....+. ....+..+++.+.+..++++. .+.|.+.+............. .....
T Consensus 127 ywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~ 206 (400)
T 3p5b_L 127 YWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRA 206 (400)
T ss_dssp EEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEE
T ss_pred EEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcce
Confidence 344444567777777542 1222222 124578899998667776653 457888887654433333222 12333
Q ss_pred EEEEecCCCC-EEEEe-cCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCCC
Q psy6442 127 ASLLLNSERP-IFVCG-GEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTNVG 197 (231)
Q Consensus 127 ~~~~~~~~~~-~~~~g-~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~~~ 197 (231)
+.+ +|.+. ++.+- +....|+..++............-...+.|+++|++. ++.+=+..+.|..+|+...
T Consensus 207 iav--dp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 207 IVV--DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 278 (400)
T ss_dssp EEE--ETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEE--ecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence 333 65444 33443 2246788888754332222222335678999998765 4555567788999987543
No 295
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=94.60 E-value=1.6 Score=35.92 Aligned_cols=148 Identities=8% Similarity=0.011 Sum_probs=86.0
Q ss_pred CEEEEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCEEEEEc---CCeEEEEECCCcceEEeeecc-ceeEEE
Q psy6442 53 TRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVTH---GSCVTFLDANSLELIKEHKVP-AQVHSA 127 (231)
Q Consensus 53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~-~~~~~~ 127 (231)
..+++-...+.|.+.++........+.. ...+..+++.|.+..++++. ...|...+............. .....+
T Consensus 172 ~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~gl 251 (400)
T 3p5b_L 172 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 251 (400)
T ss_dssp EEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred ceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEE
Confidence 3344445567788888765544333332 24588999999877777764 246777776543332222211 122333
Q ss_pred EEEecCCCCEEE-EecCCCeEEEEeCCCcceeeecc--CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442 128 SLLLNSERPIFV-CGGEDLKMYKFDYSTGAEIESFK--GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW 203 (231)
Q Consensus 128 ~~~~~~~~~~~~-~g~~d~~i~~~d~~~~~~~~~~~--~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~ 203 (231)
.+ ++.+..+. +-....+|+.+|+.......... +.......+++ ..+.++.+-...+.|..+|..+|+....+
T Consensus 252 av--d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 252 TL--DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp EE--ETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred EE--EeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 44 65444444 44556789999885432211112 22334567777 34467777788889999997777665444
No 296
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.49 E-value=0.74 Score=40.49 Aligned_cols=114 Identities=12% Similarity=0.162 Sum_probs=65.9
Q ss_pred ceeEEEcc-CCCEEEEEc-C-----------CeEEEEECCCcceEEe--eeccceeEEEEEEecCCCCEEEEecC-CCeE
Q psy6442 84 PNSLEISR-DGTTITVTH-G-----------SCVTFLDANSLELIKE--HKVPAQVHSASLLLNSERPIFVCGGE-DLKM 147 (231)
Q Consensus 84 ~~~v~~~~-~~~~~~~~~-~-----------~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~-d~~i 147 (231)
...+++.+ +++.++.+. + ..+.+||..+...... ...+....+.......++.+++.|+. +..+
T Consensus 188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 267 (656)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCce
Confidence 34666776 666555432 1 1567788766543222 21111111111223567888888884 4579
Q ss_pred EEEeCCCcce--eeeccCCCCCeeEEEEcCCCCEEEEee-CC-----CcEEEEeCCCCC
Q psy6442 148 YKFDYSTGAE--IESFKGHFGPIHCVKFSPDGELYASGS-ED-----GTLRLWQTNVGK 198 (231)
Q Consensus 148 ~~~d~~~~~~--~~~~~~h~~~V~~v~~spd~~~laS~s-~d-----~~v~iwd~~~~~ 198 (231)
++||..+.+- +..+.... .-.+++..+++++++.|+ .+ ..+.+||..+.+
T Consensus 268 ~~yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred EEecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 9999876542 22222111 123566778999999998 44 579999998753
No 297
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=94.47 E-value=1.5 Score=34.93 Aligned_cols=147 Identities=8% Similarity=-0.001 Sum_probs=84.6
Q ss_pred CEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEEc---CCeEEEEECCCcceEEeeecc-ceeEEE
Q psy6442 53 TRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTH---GSCVTFLDANSLELIKEHKVP-AQVHSA 127 (231)
Q Consensus 53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~-~~~~~~ 127 (231)
..+++-...+.|.+.++........+. ....+..+++.|.+..++.+. ...|..++............. .....+
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence 334454556778888876543322221 224688999999877777664 357777776543222111111 122333
Q ss_pred EEEecCCCC-EEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442 128 SLLLNSERP-IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL 202 (231)
Q Consensus 128 ~~~~~~~~~-~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~ 202 (231)
++ ++++. +..+-....+|+.+|+..........+.......+++.. +.++.+-...+.|..++..+|+....
T Consensus 172 av--d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~ 244 (318)
T 3sov_A 172 TL--DYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLRE 244 (318)
T ss_dssp EE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred EE--eccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEE
Confidence 33 65444 444445567899998853222111222344567788864 45667777888899999887775443
No 298
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=94.39 E-value=2.4 Score=37.13 Aligned_cols=144 Identities=9% Similarity=0.020 Sum_probs=79.7
Q ss_pred EEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEEc---CCeEEEEECCCcceEEeeecc-ceeEEEE
Q psy6442 54 RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTH---GSCVTFLDANSLELIKEHKVP-AQVHSAS 128 (231)
Q Consensus 54 ~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~-~~~~~~~ 128 (231)
.+++-...+.|.+.++........+. .-..|..+++.|....++.+. ...|...+............. .....+.
T Consensus 98 ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gla 177 (619)
T 3s94_A 98 LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLT 177 (619)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEE
Confidence 34444556788888876544322221 234688999999877777664 246666665433222111111 1223333
Q ss_pred EEecCC-CCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442 129 LLLNSE-RPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY 200 (231)
Q Consensus 129 ~~~~~~-~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~ 200 (231)
+ ++. +.+..+-....+|+.+|+..........+.......|++.++ .++.+-...+.|...|..+|+..
T Consensus 178 l--d~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 178 L--DYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp E--ETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred E--EccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 3 554 444445455678999888543322222222223457788776 66777778889999998887654
No 299
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.36 E-value=2.9 Score=37.87 Aligned_cols=148 Identities=9% Similarity=0.029 Sum_probs=85.6
Q ss_pred CEEEEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCEEEEEcC---CeEEEEECCCcceEEeeecc-ceeEEE
Q psy6442 53 TRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVTHG---SCVTFLDANSLELIKEHKVP-AQVHSA 127 (231)
Q Consensus 53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~-~~~~~~ 127 (231)
..+++-...+.|.+.++........+.. ...+..+++.|....|+++.. ..|...++............ .....+
T Consensus 484 ~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GL 563 (791)
T 3m0c_C 484 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 563 (791)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred cEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEE
Confidence 3444555567888888865443333322 246889999998777777642 46777777654332222222 123333
Q ss_pred EEEecCCCC-EEEEecCCCeEEEEeCCCcceeeeccC--CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442 128 SLLLNSERP-IFVCGGEDLKMYKFDYSTGAEIESFKG--HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW 203 (231)
Q Consensus 128 ~~~~~~~~~-~~~~g~~d~~i~~~d~~~~~~~~~~~~--h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~ 203 (231)
.+ ++... +.++-....+|+.+++........+.. .-.....|++..+ +++.+-...+.|...|..+|+....+
T Consensus 564 av--D~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 564 TL--DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EE--ecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcceEEe
Confidence 44 54444 444444557899988854332222222 2233456777443 56777778888988888788765544
No 300
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.30 E-value=1.7 Score=35.02 Aligned_cols=141 Identities=16% Similarity=0.230 Sum_probs=72.3
Q ss_pred EEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe------CCcceeEEEccC---CCEEEE
Q psy6442 28 VWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF------GAVPNSLEISRD---GTTITV 98 (231)
Q Consensus 28 V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~------~~~~~~v~~~~~---~~~~~~ 98 (231)
-+.+.|.|+|. |+.+..++.|++++ +++....... ...+..++++|+ +..+++
T Consensus 33 P~~ia~~pdG~----------------l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv 94 (352)
T 2ism_A 33 PWALAFLPDGG----------------MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYA 94 (352)
T ss_dssp EEEEEECTTSC----------------EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEE
T ss_pred ceEEEEcCCCe----------------EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEE
Confidence 46777777654 34444567888887 3332111111 245789999998 566666
Q ss_pred EcC-------CeEEEEECCCcce-----E-Eeeec-ccee-EEEEEEecCCCCEEEEecC-------------CCeEEEE
Q psy6442 99 THG-------SCVTFLDANSLEL-----I-KEHKV-PAQV-HSASLLLNSERPIFVCGGE-------------DLKMYKF 150 (231)
Q Consensus 99 ~~~-------~~i~~~d~~~~~~-----~-~~~~~-~~~~-~~~~~~~~~~~~~~~~g~~-------------d~~i~~~ 150 (231)
+.. ..|..++...... + ..... .... ....+.+.+++.+.++-+. .++|..+
T Consensus 95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri 174 (352)
T 2ism_A 95 YRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRL 174 (352)
T ss_dssp EEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEE
T ss_pred EEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEE
Confidence 532 5666676553211 1 11110 0000 0112344778876666432 2577777
Q ss_pred eCCCc------------ceeeec-cCCCCCeeEEEEcC-CCCEEEEeeCCC
Q psy6442 151 DYSTG------------AEIESF-KGHFGPIHCVKFSP-DGELYASGSEDG 187 (231)
Q Consensus 151 d~~~~------------~~~~~~-~~h~~~V~~v~~sp-d~~~laS~s~d~ 187 (231)
+.... .....+ .+|. ....++|+| +++++++-...+
T Consensus 175 ~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~ 224 (352)
T 2ism_A 175 TPEGEPAPGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPS 224 (352)
T ss_dssp CTTSSBCTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC-
T ss_pred cCCCCCCCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCC
Confidence 76420 011111 2333 356789999 677766654333
No 301
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.02 E-value=3.4 Score=37.41 Aligned_cols=143 Identities=10% Similarity=0.004 Sum_probs=80.0
Q ss_pred EEEEEeCCCCEEEEeCCCC----CceEEEE-eCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeE
Q psy6442 54 RLISCAEDKTVRLWDVSAS----AEVQKLE-FGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVH 125 (231)
Q Consensus 54 ~l~s~s~D~ti~iwd~~~~----~~~~~~~-~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~ 125 (231)
.+++-...+.|+.+++... .....+. ....+..+++.+.+..|+++. .+.|.+.++............ ....
T Consensus 438 lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~ 517 (791)
T 3m0c_C 438 IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR 517 (791)
T ss_dssp EEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEE
T ss_pred eEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcc
Confidence 3444445566777777542 1122222 124678999998888887764 468888887654433222222 1233
Q ss_pred EEEEEecCCCC-EEEEec-CCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCC
Q psy6442 126 SASLLLNSERP-IFVCGG-EDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVGK 198 (231)
Q Consensus 126 ~~~~~~~~~~~-~~~~g~-~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~~ 198 (231)
.+.+ ++... ++.+-. ...+|+..++........+...-...+.|+++|.+ +++.+=...+.|...++....
T Consensus 518 gIaV--Dp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 518 AIVV--DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp EEEE--ETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred eEEE--ecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 3333 66533 434432 23678888875433222223333568899999765 455555667788888885443
No 302
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=92.87 E-value=3.1 Score=33.53 Aligned_cols=137 Identities=10% Similarity=0.121 Sum_probs=71.5
Q ss_pred cEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-e------CCcceeEEEccC---CCEE
Q psy6442 27 CVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-F------GAVPNSLEISRD---GTTI 96 (231)
Q Consensus 27 ~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~------~~~~~~v~~~~~---~~~~ 96 (231)
.-+.++|.|+|. |+.+..++.|+++| .+++ ..+. . ...+..++++|+ +..+
T Consensus 30 ~P~~ia~~pdG~----------------l~V~e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~l 90 (354)
T 3a9g_A 30 VPWSIAPLGGGR----------------YLVTERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWV 90 (354)
T ss_dssp CEEEEEEEETTE----------------EEEEETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEE
T ss_pred CCeEEEEcCCCe----------------EEEEeCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEE
Confidence 446777777653 44455568888886 3443 2221 1 235789999998 5566
Q ss_pred EEEcC---------CeEEEEECCCc--c-----eE-EeeeccceeEEEEEEecCCCCEEEEecC-------------CCe
Q psy6442 97 TVTHG---------SCVTFLDANSL--E-----LI-KEHKVPAQVHSASLLLNSERPIFVCGGE-------------DLK 146 (231)
Q Consensus 97 ~~~~~---------~~i~~~d~~~~--~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------------d~~ 146 (231)
+++.. ..|..++.... . .+ ........-....+.+.+++.+.++-+. .++
T Consensus 91 yv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~ 170 (354)
T 3a9g_A 91 YLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGK 170 (354)
T ss_dssp EEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSE
T ss_pred EEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeE
Confidence 55431 45666665432 1 11 1111100000112334778877666432 256
Q ss_pred EEEEeCCCc---------ceeeeccCCCCCeeEEEEcC-CCCEEEEee
Q psy6442 147 MYKFDYSTG---------AEIESFKGHFGPIHCVKFSP-DGELYASGS 184 (231)
Q Consensus 147 i~~~d~~~~---------~~~~~~~~h~~~V~~v~~sp-d~~~laS~s 184 (231)
|+.++.... ..+. -.+|.. ...++|+| +++++++-.
T Consensus 171 I~ri~~dG~~p~~npf~~~~i~-a~G~rn-p~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 171 ILRVDEEGRPPADNPFPNSPIW-SYGHRN-PQGIDWHRASGVMVATEH 216 (354)
T ss_dssp EEEECTTSCCCTTSSSTTCCEE-EECCSC-CCEEEECTTTCCEEEEEC
T ss_pred EEEEcCCCCCCCCCCCCCCcEE-EEccCC-cceEEEeCCCCCEEEEec
Confidence 777776421 0111 124443 46799999 677766654
No 303
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.78 E-value=0.44 Score=38.54 Aligned_cols=146 Identities=14% Similarity=0.109 Sum_probs=81.4
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCceEEEEeC--CcceeEEE--cc-CCCEEEE--EcCCeEEEEECCCcceEEeeecccee
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAEVQKLEFG--AVPNSLEI--SR-DGTTITV--THGSCVTFLDANSLELIKEHKVPAQV 124 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~--~~~~~v~~--~~-~~~~~~~--~~~~~i~~~d~~~~~~~~~~~~~~~~ 124 (231)
+..++.++.||.|.-.|..+|+.+-++... .++....- .+ ++..+++ ..++.+..++..++........+.-+
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 346888999999999999999888777654 12211110 01 2233333 35778888887766444443332111
Q ss_pred E--EEEEE----e-c----CCCCEEEEecCCCeEEEEeCCCcceeeeccCCC--CC-----eeEEE---Ec--CCCCEEE
Q psy6442 125 H--SASLL----L-N----SERPIFVCGGEDLKMYKFDYSTGAEIESFKGHF--GP-----IHCVK---FS--PDGELYA 181 (231)
Q Consensus 125 ~--~~~~~----~-~----~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~--~~-----V~~v~---~s--pd~~~la 181 (231)
. .+... . . ..+..+.+|+.+++++-.|..+|+.+.++.... .. ..|.. +. ..+..+.
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 0 00100 0 0 134567889999999999999999998875321 10 00111 10 1134566
Q ss_pred EeeCCCcEEEEeCCCCC
Q psy6442 182 SGSEDGTLRLWQTNVGK 198 (231)
Q Consensus 182 S~s~d~~v~iwd~~~~~ 198 (231)
.+..+..+.+.+ ++|+
T Consensus 170 ig~~~y~v~~~~-~sG~ 185 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGA 185 (339)
T ss_dssp EEEEEEECEECC-TTSC
T ss_pred EecceEEEEEEC-CCCC
Confidence 666667777766 4554
No 304
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.56 E-value=3.1 Score=33.42 Aligned_cols=101 Identities=16% Similarity=0.240 Sum_probs=56.4
Q ss_pred CcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeec----cceeEEEEEEecCC----CCEEEEecCC-----CeEE
Q psy6442 82 AVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKV----PAQVHSASLLLNSE----RPIFVCGGED-----LKMY 148 (231)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~g~~d-----~~i~ 148 (231)
..+..+++.|++..+++...+.|..++......+..... ..... .+.++|+ +.+.++-... .+|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~~g~~~~~~~~~v~~~g~~~p~--gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFREGRLSTYAELSVYHRGESGLL--GLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEETTEEEEEEECCCCCSTTCSEE--EEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEECCCccEeecceEeecCCCCce--eEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 457899999999966666668888887221111211110 11223 3344776 4444443322 6788
Q ss_pred EEeCCCcc------eeeecc---CCCCCeeEEEEcCCCCEEEEee
Q psy6442 149 KFDYSTGA------EIESFK---GHFGPIHCVKFSPDGELYASGS 184 (231)
Q Consensus 149 ~~d~~~~~------~~~~~~---~h~~~V~~v~~spd~~~laS~s 184 (231)
.++...+. .+..+. +.......++|.|||.++++.+
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 88775331 122233 1112346899999998888754
No 305
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=92.08 E-value=5.8 Score=34.79 Aligned_cols=140 Identities=11% Similarity=0.050 Sum_probs=81.4
Q ss_pred EEEEeCCCCEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeEEEEEE
Q psy6442 55 LISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVHSASLL 130 (231)
Q Consensus 55 l~s~s~D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~ 130 (231)
+++-..++.|..+++........+..+ ..+..+++.+.+..++++. .+.|...+............. .....+.+
T Consensus 52 ywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iav- 130 (628)
T 4a0p_A 52 YWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALAL- 130 (628)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEE-
T ss_pred EEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEE-
Confidence 445555677877777654433333323 3588999998877777764 367888887654322111111 12233333
Q ss_pred ecCC-CCEEEEe-cCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCCC
Q psy6442 131 LNSE-RPIFVCG-GEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTNVG 197 (231)
Q Consensus 131 ~~~~-~~~~~~g-~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~~~ 197 (231)
+|. +.+..+- +...+|+..++.... ...+-..-...+.|++++++. ++.+=+..+.|...++...
T Consensus 131 -dp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 131 -DPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp -ETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred -ccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence 653 4444443 235688888875333 222222345678999999754 5555567788999988543
No 306
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=91.21 E-value=7.2 Score=34.12 Aligned_cols=135 Identities=10% Similarity=0.061 Sum_probs=73.5
Q ss_pred CCCCEEEEeCCCCCceEEE-EeC-CcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeEEEEEEecCC
Q psy6442 60 EDKTVRLWDVSASAEVQKL-EFG-AVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSE 134 (231)
Q Consensus 60 ~D~ti~iwd~~~~~~~~~~-~~~-~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~ 134 (231)
..+.|..+++........+ ..+ ..+..+++.+.+..++++. .+.|...+............. .....+.+ +|.
T Consensus 60 ~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iav--dp~ 137 (619)
T 3s94_A 60 SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIAL--DPS 137 (619)
T ss_dssp TTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEE--ETT
T ss_pred CCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEE--ecC
Confidence 3456666666544222222 222 4688999999877777764 468888887654322221111 11222333 554
Q ss_pred -CCEEEEe-cCCCeEEEEeCCCcceeeec-cCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCC
Q psy6442 135 -RPIFVCG-GEDLKMYKFDYSTGAEIESF-KGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVG 197 (231)
Q Consensus 135 -~~~~~~g-~~d~~i~~~d~~~~~~~~~~-~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~ 197 (231)
+.++.+- +....|+..++.- .....+ ...-...+.|+++|++ +++.+=+..+.|...++...
T Consensus 138 ~g~ly~tD~g~~~~I~r~~~dG-~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 138 SGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp TTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred CCeEEEeccCCCCEEEEEECCC-CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence 4344443 2346777777643 222222 2233457899999965 45555567788988888543
No 307
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=90.41 E-value=5.6 Score=31.46 Aligned_cols=115 Identities=14% Similarity=0.182 Sum_probs=61.6
Q ss_pred CcceeEEEccCCCEEEEEcCCeEEE-EEC--CCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCccee
Q psy6442 82 AVPNSLEISRDGTTITVTHGSCVTF-LDA--NSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI 158 (231)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~~~~i~~-~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~ 158 (231)
..+..+.+.+++..+++...+.+.. .|. .+...+.. ..+..+..+ ...+++.+++. +.++.++..+...++.-
T Consensus 163 ~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~-~~~~~~~~~--~~~~~g~~~~~-~~~G~~~~s~~D~G~tW 238 (327)
T 2xbg_A 163 GVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNR-TTSRRLHNM--GFTPDGRLWMI-VNGGKIAFSDPDNSENW 238 (327)
T ss_dssp CCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEEC-CSSSCEEEE--EECTTSCEEEE-ETTTEEEEEETTEEEEE
T ss_pred cceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCC-CCCCcccee--EECCCCCEEEE-eCCceEEEecCCCCCee
Confidence 3567888889888877766554433 332 22222211 112223333 33666665544 45677776632223221
Q ss_pred eecc----CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442 159 ESFK----GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL 202 (231)
Q Consensus 159 ~~~~----~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~ 202 (231)
..+. .+...+.++++.|++.+++.+. ++.| .+....|+.+..
T Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~ 284 (327)
T 2xbg_A 239 GELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQ 284 (327)
T ss_dssp CCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEE
T ss_pred EeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEE
Confidence 1111 1223588999999888777655 6666 445556755443
No 308
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=90.18 E-value=6.2 Score=31.69 Aligned_cols=146 Identities=12% Similarity=0.112 Sum_probs=84.8
Q ss_pred CCCEEEEeCC---CCCceEEEEeC--------------CcceeEEEccCCCEEE-EEcC-CeEEEEECCCcceEEee-ec
Q psy6442 61 DKTVRLWDVS---ASAEVQKLEFG--------------AVPNSLEISRDGTTIT-VTHG-SCVTFLDANSLELIKEH-KV 120 (231)
Q Consensus 61 D~ti~iwd~~---~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~-~~~~-~~i~~~d~~~~~~~~~~-~~ 120 (231)
+..|..+|+. +++.+..+.+. ..++.++..++|+.-+ -+.. +.|..++........-. ..
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~ 178 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWES 178 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecC
Confidence 6778899998 78877776642 1378999999998644 4456 77777776544222111 11
Q ss_pred c---c--eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce--eeec-cCCCC---CeeEE-EEcCCCCE-EEEeeCCC
Q psy6442 121 P---A--QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE--IESF-KGHFG---PIHCV-KFSPDGEL-YASGSEDG 187 (231)
Q Consensus 121 ~---~--~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~--~~~~-~~h~~---~V~~v-~~spd~~~-laS~s~d~ 187 (231)
+ . ....+ ...|++..|+.....+++..+|+..... +..- .|... ....+ ..-.+|+. |++....+
T Consensus 179 ~~~~~~~G~nGI--v~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~ 256 (334)
T 2p9w_A 179 GNGGQRPGYSGI--TFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPY 256 (334)
T ss_dssp CCSSSCCSCSEE--EEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTE
T ss_pred CCcccccCcceE--EEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCCCC
Confidence 1 1 12233 3478888777776699999999875332 2110 02211 12332 22235665 66666677
Q ss_pred cEEEEeCCCCCeeeeeeccCC
Q psy6442 188 TLRLWQTNVGKTYGLWKCIEG 208 (231)
Q Consensus 188 ~v~iwd~~~~~~~~~~~~~~~ 208 (231)
.+.+.+...-+.......+.+
T Consensus 257 ~~~l~S~DgW~sa~~~g~~~~ 277 (334)
T 2p9w_A 257 AISFRSWDNWKSANIKKTKRS 277 (334)
T ss_dssp EEEEECSSTTSEEEEEEEECG
T ss_pred EEEEECCCCcceeEEeeeecC
Confidence 666776655555544444333
No 309
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=89.80 E-value=7.8 Score=33.70 Aligned_cols=137 Identities=15% Similarity=0.161 Sum_probs=86.0
Q ss_pred CEEEEeCCC----C-CceEEEEeCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcce-------------EEeeeccc
Q psy6442 63 TVRLWDVSA----S-AEVQKLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLEL-------------IKEHKVPA 122 (231)
Q Consensus 63 ti~iwd~~~----~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~-------------~~~~~~~~ 122 (231)
.|++-|.+. + ..++.+..+..+-.+-.+|||+.++++. +.++.++|...... ........
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 578888876 2 4567777888899999999999998875 46888888763211 11222222
Q ss_pred eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc----------ceeeeccCCCCCeeEEE-----EcCCCCEEEEee---
Q psy6442 123 QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG----------AEIESFKGHFGPIHCVK-----FSPDGELYASGS--- 184 (231)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~----------~~~~~~~~h~~~V~~v~-----~spd~~~laS~s--- 184 (231)
..+-..+++++....+---|..|-.|++..- ..+..+.-|..+-+-.+ -.|||++|++..
T Consensus 379 --GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~s 456 (638)
T 3sbq_A 379 --GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFS 456 (638)
T ss_dssp --CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCC
T ss_pred --cccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccc
Confidence 2222334777844455557889999998542 34455555554433211 367888888874
Q ss_pred CCCcE----------EEEeCCCCCeeee
Q psy6442 185 EDGTL----------RLWQTNVGKTYGL 202 (231)
Q Consensus 185 ~d~~v----------~iwd~~~~~~~~~ 202 (231)
.|+.+ .|.|+ +|..+.+
T Consensus 457 kdrfl~vGpl~pen~QlidI-sGdkM~l 483 (638)
T 3sbq_A 457 KDRFLPVGPLHPENDQLIDI-SGDEMKL 483 (638)
T ss_dssp TTSSCCCSSSCCEEEEEEEC-SSSSCEE
T ss_pred cccCcCCCCCCCCcceeEec-CCCceEE
Confidence 57665 56777 3334433
No 310
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=89.13 E-value=6.5 Score=30.40 Aligned_cols=142 Identities=11% Similarity=0.107 Sum_probs=69.5
Q ss_pred CCCEEEEEeCC------CCEEEEeCCCCCceEEEEeCCc-ceeEEEccCCCEEEEEc----------CCeEEEEECCCcc
Q psy6442 51 NNTRLISCAED------KTVRLWDVSASAEVQKLEFGAV-PNSLEISRDGTTITVTH----------GSCVTFLDANSLE 113 (231)
Q Consensus 51 ~~~~l~s~s~D------~ti~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~----------~~~i~~~d~~~~~ 113 (231)
++..++.++.+ ..+.+||..+.+-...-..... ....+...+++..+++. ...+..+|..+..
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~ 180 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET 180 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence 45556666655 4588888877653322111111 11112222444333321 2346778876654
Q ss_pred eEEeeeccce--eEEEEEEecCCCCEEEEecCC-----CeEEEEeCCCcc--eeeeccCCCCCeeEEEEcCCCCEEEEee
Q psy6442 114 LIKEHKVPAQ--VHSASLLLNSERPIFVCGGED-----LKMYKFDYSTGA--EIESFKGHFGPIHCVKFSPDGELYASGS 184 (231)
Q Consensus 114 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~d-----~~i~~~d~~~~~--~~~~~~~h~~~V~~v~~spd~~~laS~s 184 (231)
-......+.+ ...... . ++.+++.|+.+ ..++.||..+.+ .+..+.........+.+ ++.+++.|+
T Consensus 181 W~~~~~~p~~r~~~~~~~--~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG 255 (306)
T 3ii7_A 181 WTELCPMIEARKNHGLVF--V-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAG 255 (306)
T ss_dssp EEEECCCSSCCBSCEEEE--E-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEEC
T ss_pred EEECCCccchhhcceEEE--E-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeC
Confidence 3322222221 122222 1 55677777653 357888887653 22222211111222223 667777777
Q ss_pred CC-----CcEEEEeCCCC
Q psy6442 185 ED-----GTLRLWQTNVG 197 (231)
Q Consensus 185 ~d-----~~v~iwd~~~~ 197 (231)
.+ ..+.+||..+.
T Consensus 256 ~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 256 FQGVGRLGHILEYNTETD 273 (306)
T ss_dssp BCSSSBCCEEEEEETTTT
T ss_pred cCCCeeeeeEEEEcCCCC
Confidence 44 56888998775
No 311
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=88.79 E-value=8.1 Score=31.06 Aligned_cols=101 Identities=17% Similarity=0.258 Sum_probs=55.8
Q ss_pred CcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeee----ccceeEEEEEEecCC----CCEEEEecC---C----Ce
Q psy6442 82 AVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHK----VPAQVHSASLLLNSE----RPIFVCGGE---D----LK 146 (231)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~g~~---d----~~ 146 (231)
..+..+++.|+++.+++...+.|..++......+.... ...... .+.++|+ +.+.++-.. + .+
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~--gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISPSGKKLVASFDVANVGEAGLL--GLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEE--EEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeCCCceEeeccceeecCCCcee--eEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 45789999999986666666888888743221122111 011223 3344665 444444332 3 56
Q ss_pred EEEEeCCCc-------c-eeeeccC-CCCCeeEEEEcCCCCEEEEee
Q psy6442 147 MYKFDYSTG-------A-EIESFKG-HFGPIHCVKFSPDGELYASGS 184 (231)
Q Consensus 147 i~~~d~~~~-------~-~~~~~~~-h~~~V~~v~~spd~~~laS~s 184 (231)
|..++.... + .+..+.. .......++|.|||.++++-+
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 777776543 1 1122221 111346799999999888754
No 312
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=88.71 E-value=8.4 Score=31.15 Aligned_cols=132 Identities=12% Similarity=0.192 Sum_probs=87.3
Q ss_pred CCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEE
Q psy6442 61 DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVC 140 (231)
Q Consensus 61 D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (231)
+.+|-|-|+..+.....-. -...+.-.+|..+.++...+..+.++++.+...++.+..+.++....| .+++..-+++
T Consensus 48 ~~~VvIiDl~n~~~~~Rrp--i~AdsAIMnP~~~ViALrag~~LQiFnletK~klks~~~~e~VvfWkW-is~~~L~lVT 124 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRP--ISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKW-ISLNTVALVT 124 (365)
T ss_dssp EEEEEEEETTSTTSCEEEE--CCCSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCEEEEEE-CSSSEEEEEE
T ss_pred CCEEEEEECCCCCCccccc--cccceeeeCCCccEEEEecCCeEEEechHHhhhhcceecCCccEEEEe-cCCCeEEEEc
Confidence 3478888988765543322 233455678988888877788999999999999999998877765555 2333322333
Q ss_pred ecCCCeEEEEeCCC-cceeeeccCCC----CCeeEEEEcCCCCEEEEee---C----CCcEEEEeCCCCC
Q psy6442 141 GGEDLKMYKFDYST-GAEIESFKGHF----GPIHCVKFSPDGELYASGS---E----DGTLRLWQTNVGK 198 (231)
Q Consensus 141 g~~d~~i~~~d~~~-~~~~~~~~~h~----~~V~~v~~spd~~~laS~s---~----d~~v~iwd~~~~~ 198 (231)
+..++-|++.. ..+.+.|+.|. ..|..-..+++.+.++-.+ . .|.+-||..+.+.
T Consensus 125 ---~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~ 191 (365)
T 2xzh_A 125 ---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV 191 (365)
T ss_dssp ---SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE
T ss_pred ---CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc
Confidence 56789998864 34445555442 4577777888887554433 2 3566788876654
No 313
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=88.09 E-value=7.6 Score=29.88 Aligned_cols=142 Identities=13% Similarity=0.131 Sum_probs=68.7
Q ss_pred CCCEEEEEeCC-----CCEEEEeCCCCCceEEEEeCCc-ceeEEEccCCCEEEEEc------CCeEEEEECCCcceEEee
Q psy6442 51 NNTRLISCAED-----KTVRLWDVSASAEVQKLEFGAV-PNSLEISRDGTTITVTH------GSCVTFLDANSLELIKEH 118 (231)
Q Consensus 51 ~~~~l~s~s~D-----~ti~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~------~~~i~~~d~~~~~~~~~~ 118 (231)
++..++.++.+ ..+.++|..+.+-...-..... ....+...+++..+++. .+.+..+|..+..-....
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 191 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT 191 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC
Confidence 34445555543 3577888876654332222211 11112222444333321 245777887664433222
Q ss_pred eccce--eEEEEEEecCCCCEEEEecCC-----CeEEEEeCCCcc--eeeeccCCCCCeeEEEEcCCCCEEEEeeCC---
Q psy6442 119 KVPAQ--VHSASLLLNSERPIFVCGGED-----LKMYKFDYSTGA--EIESFKGHFGPIHCVKFSPDGELYASGSED--- 186 (231)
Q Consensus 119 ~~~~~--~~~~~~~~~~~~~~~~~g~~d-----~~i~~~d~~~~~--~~~~~~~h~~~V~~v~~spd~~~laS~s~d--- 186 (231)
..+.+ ...... .++.+++.|+.+ ..++.||..+.+ .+..+...... .++ ..-++.+++.++.+
T Consensus 192 ~~p~~r~~~~~~~---~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~-~~~~~~i~v~GG~~~~~ 266 (301)
T 2vpj_A 192 PMATKRSGAGVAL---LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY-VGA-TVLRGRLYAIAGYDGNS 266 (301)
T ss_dssp CCSSCCBSCEEEE---ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEE-EEETTEEEEECCBCSSS
T ss_pred CCCcccccceEEE---ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc-eeE-EEECCEEEEEcCcCCCc
Confidence 22221 112221 245677777664 468899987654 22222211111 122 22266777777755
Q ss_pred --CcEEEEeCCCC
Q psy6442 187 --GTLRLWQTNVG 197 (231)
Q Consensus 187 --~~v~iwd~~~~ 197 (231)
..|.+||..+.
T Consensus 267 ~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 267 LLSSIECYDPIID 279 (301)
T ss_dssp BEEEEEEEETTTT
T ss_pred ccccEEEEcCCCC
Confidence 45778888775
No 314
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=87.68 E-value=19 Score=34.09 Aligned_cols=129 Identities=12% Similarity=0.116 Sum_probs=74.1
Q ss_pred CCCEEEEeCCCCCc--eEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecc--ceeEEEEEEecCCCC
Q psy6442 61 DKTVRLWDVSASAE--VQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVP--AQVHSASLLLNSERP 136 (231)
Q Consensus 61 D~ti~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 136 (231)
-|.|.++++..++. +...+.+..+.+++--. | .++++-++++++|+....+.++ .... ..+....+ ...+.
T Consensus 863 ~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~-g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l--~~~~~ 937 (1158)
T 3ei3_A 863 QGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFN-G-KLLASINSTVRLYEWTTEKELR-TECNHYNNIMALYL--KTKGD 937 (1158)
T ss_dssp CEEEEEEEEETTEEEEEEEEEESSCEEEEEEET-T-EEEEEETTEEEEEEECTTSCEE-EEEEECCCSCEEEE--EEETT
T ss_pred ceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeC-C-EEEEEcCCEEEEEECCCCceEE-EEeeccccEEEEEE--eccCC
Confidence 36688888764322 23334567787776554 3 6667778899999987655443 1111 01111122 22355
Q ss_pred EEEEecCCCeEEE--EeCCCcceeeeccC--CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442 137 IFVCGGEDLKMYK--FDYSTGAEIESFKG--HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV 196 (231)
Q Consensus 137 ~~~~g~~d~~i~~--~d~~~~~~~~~~~~--h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~ 196 (231)
+++.|.-...+.+ |+...+++ ..+-. +...++++.|=.++ .++.+..+|+|.+.....
T Consensus 938 ~I~vgD~~~Sv~~~~y~~~~~~L-~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 938 FILVGDLMRSVLLLAYKPMEGNF-EEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEEESSBCEEEEEEETTTTEE-EEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred EEEEEEhhheEEEEEEEcCCCeE-EEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 6777766655554 55444433 22222 33456777775554 677789999999987543
No 315
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=87.14 E-value=11 Score=30.51 Aligned_cols=162 Identities=14% Similarity=0.211 Sum_probs=82.6
Q ss_pred eecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe-------CCcceeEEEccC-
Q psy6442 21 FEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-------GAVPNSLEISRD- 92 (231)
Q Consensus 21 l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-------~~~~~~v~~~~~- 92 (231)
+-..-..-+.++|.|+|.. +++--..|.|++++...++....... ...+..++++|+
T Consensus 27 va~gL~~P~~ia~~pdG~l---------------lVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf 91 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDL---------------LVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDY 91 (347)
T ss_dssp EECCCSSEEEEEECTTSCE---------------EEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTH
T ss_pred eecCCCCceEEEEcCCCcE---------------EEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEecccc
Confidence 3333445578888887543 44443378888887655543222111 234678999996
Q ss_pred --CCEEEEE----cCCeEEEEECCCc-----ce--EEe-e-eccc-ee-EEEEEEecCCCCEEEEecC------------
Q psy6442 93 --GTTITVT----HGSCVTFLDANSL-----EL--IKE-H-KVPA-QV-HSASLLLNSERPIFVCGGE------------ 143 (231)
Q Consensus 93 --~~~~~~~----~~~~i~~~d~~~~-----~~--~~~-~-~~~~-~~-~~~~~~~~~~~~~~~~g~~------------ 143 (231)
...+++. ..+.|..+..... .. .+. + ..+. .. ....+.+.+++.+.++-+.
T Consensus 92 ~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~ 171 (347)
T 3das_A 92 ASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKS 171 (347)
T ss_dssp HHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTC
T ss_pred ccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCC
Confidence 4455553 2345555544331 10 111 1 1111 00 1112334778877666432
Q ss_pred -CCeEEEEeCCCc---------ceeeeccCCCCCeeEEEEcCCCCEEEEe-eCCCcEEEEeCCCCCe
Q psy6442 144 -DLKMYKFDYSTG---------AEIESFKGHFGPIHCVKFSPDGELYASG-SEDGTLRLWQTNVGKT 199 (231)
Q Consensus 144 -d~~i~~~d~~~~---------~~~~~~~~h~~~V~~v~~spd~~~laS~-s~d~~v~iwd~~~~~~ 199 (231)
.+.|+.++.... ..+.. .||.. ...++|+|+|.++++= +.|+-=.|--+..|..
T Consensus 172 ~~G~IlRi~~dG~ip~~nPf~~~~i~a-~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~n 236 (347)
T 3das_A 172 LGGKILRMTPDGEPAPGNPFPGSPVYS-YGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDN 236 (347)
T ss_dssp STTCEEEECTTSSBCTTCSSTTCCEEE-BCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCB
T ss_pred CCCEEEEEeCCCCccCCCCCCCCeEEe-eCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCE
Confidence 366777776422 11111 35653 4579999998877654 3344334444444443
No 316
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=86.34 E-value=9.7 Score=29.30 Aligned_cols=149 Identities=15% Similarity=0.234 Sum_probs=72.3
Q ss_pred CCCEEEEEeCCC-----CEEEEeCCCCCceEEEEeCCcc--eeEEEccCCCEEEEEc--------CCeEEEEECCCcceE
Q psy6442 51 NNTRLISCAEDK-----TVRLWDVSASAEVQKLEFGAVP--NSLEISRDGTTITVTH--------GSCVTFLDANSLELI 115 (231)
Q Consensus 51 ~~~~l~s~s~D~-----ti~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~--------~~~i~~~d~~~~~~~ 115 (231)
++..++.++.++ .+.+||+.+.+-...-..+... ..++. .+++..+++. ...+..+|..+..-.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 455566666553 4667787765433221111111 12222 2333333321 234677887654433
Q ss_pred Eeeeccc--eeEEEEEEecCCCCEEEEecCC-----CeEEEEeCCCcc--eeeeccCCCCCeeEEEEcCCCCEEEEeeCC
Q psy6442 116 KEHKVPA--QVHSASLLLNSERPIFVCGGED-----LKMYKFDYSTGA--EIESFKGHFGPIHCVKFSPDGELYASGSED 186 (231)
Q Consensus 116 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~d-----~~i~~~d~~~~~--~~~~~~~h~~~V~~v~~spd~~~laS~s~d 186 (231)
.....+. ....... -++.+++.|+.+ ..++.||..+.+ .+..+...... .++ ..-++.+++.|+.+
T Consensus 187 ~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~-~~~~~~i~v~GG~~ 261 (302)
T 2xn4_A 187 YIAEMSTRRSGAGVGV---LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-AGV-CAVNGLLYVVGGDD 261 (302)
T ss_dssp EECCCSSCCBSCEEEE---ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEE-EEETTEEEEECCBC
T ss_pred ECCCCccccccccEEE---ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-CeE-EEECCEEEEECCcC
Confidence 2222222 1122222 256677777654 368889987653 22222211111 112 22366777777755
Q ss_pred C-----cEEEEeCCCCCeeeeeeccCCc
Q psy6442 187 G-----TLRLWQTNVGKTYGLWKCIEGG 209 (231)
Q Consensus 187 ~-----~v~iwd~~~~~~~~~~~~~~~~ 209 (231)
+ .+.+||..+. .|+.+.+.
T Consensus 262 ~~~~~~~v~~yd~~~~----~W~~~~~~ 285 (302)
T 2xn4_A 262 GSCNLASVEYYNPTTD----KWTVVSSC 285 (302)
T ss_dssp SSSBCCCEEEEETTTT----EEEECSSC
T ss_pred CCcccccEEEEcCCCC----eEEECCcc
Confidence 3 4889998875 57765533
No 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=86.13 E-value=10 Score=29.42 Aligned_cols=91 Identities=14% Similarity=0.183 Sum_probs=45.6
Q ss_pred CeEEEEECCCcceEEeeeccce--eEEEEEEecCCCCEEEEecCCC-----eEEEEeCCCcc--eeeeccCCCCCeeEEE
Q psy6442 102 SCVTFLDANSLELIKEHKVPAQ--VHSASLLLNSERPIFVCGGEDL-----KMYKFDYSTGA--EIESFKGHFGPIHCVK 172 (231)
Q Consensus 102 ~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~d~-----~i~~~d~~~~~--~~~~~~~h~~~V~~v~ 172 (231)
+.+..+|..+..-......+.+ ...... -++.+++.|+.+. .++.||..+.+ .+..+...... .++.
T Consensus 165 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~ 240 (315)
T 4asc_A 165 NKMCVYDPKKFEWKELAPMQTARSLFGATV---HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSS-LSLV 240 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE---ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBS-CEEE
T ss_pred ceEEEEeCCCCeEEECCCCCCchhceEEEE---ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccc-eeEE
Confidence 3577788765443222222221 122222 1556777776543 57888887653 22222211111 1222
Q ss_pred EcCCCCEEEEeeCC--------------CcEEEEeCCCC
Q psy6442 173 FSPDGELYASGSED--------------GTLRLWQTNVG 197 (231)
Q Consensus 173 ~spd~~~laS~s~d--------------~~v~iwd~~~~ 197 (231)
. -++.+++.|+.+ ..|.+||+.+.
T Consensus 241 ~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 241 S-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp E-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred E-ECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 2 256777777653 23678888775
No 318
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=85.80 E-value=15 Score=30.97 Aligned_cols=133 Identities=11% Similarity=0.168 Sum_probs=88.4
Q ss_pred CCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEE
Q psy6442 61 DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVC 140 (231)
Q Consensus 61 D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (231)
..+|-|-|+..+.....-. -...+.-.+|..+.++...+..+.++++.+...++.+..+.++....|. +++. ++.
T Consensus 47 ~~~vvIiDl~~~~~~~rrp--i~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e~VvfWkWi-s~~~--l~l 121 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRP--ISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI-SLNT--VAL 121 (494)
T ss_dssp CCEEEEEETTSTTSCEEEE--CCCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEEE-ETTE--EEE
T ss_pred CCeEEEEECCCCCcceecc--cccceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCCCceEEEec-CCCe--EEE
Confidence 3478888888765543222 2334666788888887777889999999999999999888777665553 3333 222
Q ss_pred ecCCCeEEEEeCCC-cceeeeccCCC----CCeeEEEEcCCCCEEEEee-------CCCcEEEEeCCCCCe
Q psy6442 141 GGEDLKMYKFDYST-GAEIESFKGHF----GPIHCVKFSPDGELYASGS-------EDGTLRLWQTNVGKT 199 (231)
Q Consensus 141 g~~d~~i~~~d~~~-~~~~~~~~~h~----~~V~~v~~spd~~~laS~s-------~d~~v~iwd~~~~~~ 199 (231)
. .+..|+-|++.. ..+.+.|+.|. ..|..-..+++.+.++-.+ -.|.+-+|..+.+..
T Consensus 122 V-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s 191 (494)
T 1bpo_A 122 V-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS 191 (494)
T ss_dssp E-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE
T ss_pred E-cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc
Confidence 2 256789999863 34455555443 4577777888887655333 245677888876553
No 319
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=85.77 E-value=10 Score=29.08 Aligned_cols=143 Identities=13% Similarity=0.109 Sum_probs=70.4
Q ss_pred CCCEEEEEeCC-----CCEEEEeCCCCC---ceEEEEeCCc-ceeEEEccCCCEEEEEc------CCeEEEEECCCcceE
Q psy6442 51 NNTRLISCAED-----KTVRLWDVSASA---EVQKLEFGAV-PNSLEISRDGTTITVTH------GSCVTFLDANSLELI 115 (231)
Q Consensus 51 ~~~~l~s~s~D-----~ti~iwd~~~~~---~~~~~~~~~~-~~~v~~~~~~~~~~~~~------~~~i~~~d~~~~~~~ 115 (231)
++..++.++.+ ..+.+||..+.+ -...-..+.. ....+...++...+++. .+.+..+|..+..-.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 141 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWS 141 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence 34455566654 468889988776 3322112111 11112222444333321 235778887664433
Q ss_pred Eeeeccc--eeEEEEEEecCCCCEEEEecCC-----CeEEEEeCCCcc--eeeeccCCCCCeeEEEEcCCCCEEEEeeCC
Q psy6442 116 KEHKVPA--QVHSASLLLNSERPIFVCGGED-----LKMYKFDYSTGA--EIESFKGHFGPIHCVKFSPDGELYASGSED 186 (231)
Q Consensus 116 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~d-----~~i~~~d~~~~~--~~~~~~~h~~~V~~v~~spd~~~laS~s~d 186 (231)
.....+. ....... .++.+++.|+.+ ..++.||..+.+ .+..+...... .++. .-++.+++.|+.+
T Consensus 142 ~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~i~v~GG~~ 216 (301)
T 2vpj_A 142 MLGDMQTAREGAGLVV---ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSG-AGVA-LLNDHIYVVGGFD 216 (301)
T ss_dssp EEEECSSCCBSCEEEE---ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEECCBC
T ss_pred ECCCCCCCcccceEEE---ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccccc-ceEE-EECCEEEEEeCCC
Confidence 2222222 1122222 256677777654 358888887653 22222211111 1222 2256777777754
Q ss_pred -----CcEEEEeCCCCC
Q psy6442 187 -----GTLRLWQTNVGK 198 (231)
Q Consensus 187 -----~~v~iwd~~~~~ 198 (231)
..+.+||+.+.+
T Consensus 217 ~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 217 GTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp SSSBCCCEEEEETTTTE
T ss_pred CCcccceEEEEeCCCCc
Confidence 568899987753
No 320
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=84.24 E-value=12 Score=28.68 Aligned_cols=141 Identities=14% Similarity=0.156 Sum_probs=67.0
Q ss_pred CCCEEEEEeCC-----CCEEEEeCCCCCceEEEEeCCc-c-eeEEEccCCCEEEEE-cC-----CeEEEEECCCcceEEe
Q psy6442 51 NNTRLISCAED-----KTVRLWDVSASAEVQKLEFGAV-P-NSLEISRDGTTITVT-HG-----SCVTFLDANSLELIKE 117 (231)
Q Consensus 51 ~~~~l~s~s~D-----~ti~iwd~~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~-~~-----~~i~~~d~~~~~~~~~ 117 (231)
++..++.++.+ ..+.+||..+.+-...-..+.. . ..++. .++...+++ .+ +.+..+|..+..-...
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 34455556544 3577888876643322111111 1 12222 234433332 22 2466778765443322
Q ss_pred eeccce--eEEEEEEecCCCCEEEEecCC-------CeEEEEeCCCcc--eeeeccCCCCCeeEEEEcCCCCEEEEeeCC
Q psy6442 118 HKVPAQ--VHSASLLLNSERPIFVCGGED-------LKMYKFDYSTGA--EIESFKGHFGPIHCVKFSPDGELYASGSED 186 (231)
Q Consensus 118 ~~~~~~--~~~~~~~~~~~~~~~~~g~~d-------~~i~~~d~~~~~--~~~~~~~h~~~V~~v~~spd~~~laS~s~d 186 (231)
...+.+ ...... -++.+++.|+.+ ..++.||..+.+ .+..+...... .++.. -++.+++.|+.+
T Consensus 140 ~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~ 214 (302)
T 2xn4_A 140 APMNTRRSSVGVGV---VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSG-AGVGV-LNNLLYAVGGHD 214 (302)
T ss_dssp CCCSSCCBSCEEEE---ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCBS
T ss_pred CCCCCcccCceEEE---ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccccc-ccEEE-ECCEEEEECCCC
Confidence 222221 122221 245667777542 348888887653 22222211111 12222 256777777754
Q ss_pred -----CcEEEEeCCCC
Q psy6442 187 -----GTLRLWQTNVG 197 (231)
Q Consensus 187 -----~~v~iwd~~~~ 197 (231)
..+.+||..+.
T Consensus 215 ~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 215 GPLVRKSVEVYDPTTN 230 (302)
T ss_dssp SSSBCCCEEEEETTTT
T ss_pred CCcccceEEEEeCCCC
Confidence 46889998775
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=83.82 E-value=13 Score=28.71 Aligned_cols=91 Identities=13% Similarity=0.203 Sum_probs=46.5
Q ss_pred CeEEEEECCCcceEEeeeccc--eeEEEEEEecCCCCEEEEecCC-----CeEEEEeCCCcc--eeeeccCCCCCeeEEE
Q psy6442 102 SCVTFLDANSLELIKEHKVPA--QVHSASLLLNSERPIFVCGGED-----LKMYKFDYSTGA--EIESFKGHFGPIHCVK 172 (231)
Q Consensus 102 ~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~d-----~~i~~~d~~~~~--~~~~~~~h~~~V~~v~ 172 (231)
+.+..+|..+..-......+. ....... . ++.+++.|+.+ ..++.||+.+.+ .+..+...... .++.
T Consensus 184 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~ 259 (308)
T 1zgk_A 184 NSAECYYPERNEWRMITAMNTIRSGAGVCV--L-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA-LGIT 259 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--E-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE
T ss_pred ceEEEEeCCCCeEeeCCCCCCccccceEEE--E-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc-eEEE
Confidence 357778876544322222222 1122222 1 56677777654 458899987653 22222211111 1222
Q ss_pred EcCCCCEEEEeeCC-----CcEEEEeCCCC
Q psy6442 173 FSPDGELYASGSED-----GTLRLWQTNVG 197 (231)
Q Consensus 173 ~spd~~~laS~s~d-----~~v~iwd~~~~ 197 (231)
. -++.+++.|+.+ ..+.+||..+.
T Consensus 260 ~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 260 V-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp E-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred E-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 2 256777777643 45778888774
No 322
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=83.21 E-value=3.1 Score=33.58 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=62.8
Q ss_pred EEEEEcCCeEEEEECCCcceEEeeecc--ceeEEEEEEec-CCCCEEEEe-cCCCeEEEEeCCCcceeeeccC----CCC
Q psy6442 95 TITVTHGSCVTFLDANSLELIKEHKVP--AQVHSASLLLN-SERPIFVCG-GEDLKMYKFDYSTGAEIESFKG----HFG 166 (231)
Q Consensus 95 ~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~g-~~d~~i~~~d~~~~~~~~~~~~----h~~ 166 (231)
.++.+.++.+.-+|..+++....++.. .+.....-... .++..++.. ..||.++.++..+|.....+.- ...
T Consensus 13 V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~S 92 (339)
T 2be1_A 13 LIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTS 92 (339)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceecc
Confidence 344556778888888887777776554 12211000000 122333333 5799999999887754332211 122
Q ss_pred CeeE---EEE-c----CCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442 167 PIHC---VKF-S----PDGELYASGSEDGTLRLWQTNVGKTYGLWK 204 (231)
Q Consensus 167 ~V~~---v~~-s----pd~~~laS~s~d~~v~iwd~~~~~~~~~~~ 204 (231)
|+.. ..+ . -.+..+.+++.++.+.-.|+.+|+....++
T Consensus 93 P~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 93 PLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp SEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred ccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 2221 000 0 034577889999999999999999776654
No 323
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=83.07 E-value=19 Score=30.03 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=25.6
Q ss_pred CCCCCeeEEEEcCCCCEEEEe-eCCCcEEEEeCCCCCee
Q psy6442 163 GHFGPIHCVKFSPDGELYASG-SEDGTLRLWQTNVGKTY 200 (231)
Q Consensus 163 ~h~~~V~~v~~spd~~~laS~-s~d~~v~iwd~~~~~~~ 200 (231)
+|. .+..++|.|+|.++++- +.++--.|.-+..|..+
T Consensus 226 G~R-Np~gla~dp~G~L~~~d~g~~~~dein~i~~G~nY 263 (454)
T 1cru_A 226 GHR-NPQGLAFTPNGKLLQSEQGPNSDDEINLIVKGGNY 263 (454)
T ss_dssp CCS-EEEEEEECTTSCEEEEEECSSSCEEEEECCTTCBC
T ss_pred CCC-CcceEEECCCCCEEEEecCCCCCeEEEEecCCCCC
Confidence 554 46789999998866654 45666677777776654
No 324
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=82.84 E-value=15 Score=28.46 Aligned_cols=91 Identities=13% Similarity=0.111 Sum_probs=46.9
Q ss_pred CeEEEEECCCcceEEeeeccce--eEEEEEEecCCCCEEEEecCC-----CeEEEEeCCCcc--eeeeccCCCCCeeEEE
Q psy6442 102 SCVTFLDANSLELIKEHKVPAQ--VHSASLLLNSERPIFVCGGED-----LKMYKFDYSTGA--EIESFKGHFGPIHCVK 172 (231)
Q Consensus 102 ~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~d-----~~i~~~d~~~~~--~~~~~~~h~~~V~~v~ 172 (231)
..+..+|..+..-......+.+ ...... . ++.+++.|+.+ ..++.||..+.+ .+..+...... .++.
T Consensus 137 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~ 212 (308)
T 1zgk_A 137 NSVERYEPERDEWHLVAPMLTRRIGVGVAV--L-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSG-AGVC 212 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--E-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE
T ss_pred ccEEEECCCCCeEeECCCCCccccceEEEE--E-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcccc-ceEE
Confidence 3567788765443322222221 122222 1 56677777654 358888886653 22222211111 1222
Q ss_pred EcCCCCEEEEeeCC-----CcEEEEeCCCC
Q psy6442 173 FSPDGELYASGSED-----GTLRLWQTNVG 197 (231)
Q Consensus 173 ~spd~~~laS~s~d-----~~v~iwd~~~~ 197 (231)
.. ++.+++.|+.+ ..+.+||+.+.
T Consensus 213 ~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 213 VL-HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp EE-TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EE-CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 22 66777777654 56889998775
No 325
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=82.83 E-value=10 Score=36.92 Aligned_cols=133 Identities=12% Similarity=0.176 Sum_probs=85.7
Q ss_pred CCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEE
Q psy6442 61 DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVC 140 (231)
Q Consensus 61 D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (231)
..+|-|-|+..+.....- +-...+.-.+|..+.++...+..+.++++.+...++.+..+.++....| .++...-+++
T Consensus 47 ~~~vvIidl~~~~~~~rr--pi~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkW-is~~~l~lVT 123 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRR--PISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKW-ISLNTVALVT 123 (1630)
T ss_pred CceEEEEECCCCCCcccc--cccchhhccCCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEe-cCCCeeEEEc
Confidence 347888888775443111 1223355568888887777788999999999988888888777765555 2444332333
Q ss_pred ecCCCeEEEEeCCC-cceeeeccCC----CCCeeEEEEcCCCCEEEEee-------CCCcEEEEeCCCCCe
Q psy6442 141 GGEDLKMYKFDYST-GAEIESFKGH----FGPIHCVKFSPDGELYASGS-------EDGTLRLWQTNVGKT 199 (231)
Q Consensus 141 g~~d~~i~~~d~~~-~~~~~~~~~h----~~~V~~v~~spd~~~laS~s-------~d~~v~iwd~~~~~~ 199 (231)
+..|+-|++.. ..+.+.|..| ...|..-..+++...++-.+ -.|.+-+|....+..
T Consensus 124 ---~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s 191 (1630)
T 1xi4_A 124 ---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS 191 (1630)
T ss_pred ---CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc
Confidence 56789999853 3344445545 34577777788877655332 357778888766543
No 326
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=81.47 E-value=17 Score=29.00 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=22.7
Q ss_pred CcceeEEEccCCC-EEEEEcCCeEEEEECC
Q psy6442 82 AVPNSLEISRDGT-TITVTHGSCVTFLDAN 110 (231)
Q Consensus 82 ~~~~~v~~~~~~~-~~~~~~~~~i~~~d~~ 110 (231)
..+..+++.|+++ .+++...+.|.+++..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG 47 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence 4678999999998 6666667888888753
No 327
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=80.85 E-value=12 Score=32.66 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=57.2
Q ss_pred CceeeeccC----CCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC------Cc-
Q psy6442 6 KPMLRQGDT----GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS------AE- 74 (231)
Q Consensus 6 ~~~~~~~~~----g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~------~~- 74 (231)
.|.+.|+.. +.-+-.|-.-...-+.+.++|||+++ ++++--+.++-++|++.- +.
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi--------------~v~GKLsptvtV~d~~k~~~~~~~k~~ 364 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYF--------------IAAGKLSPTCSMIAIDKLPDLFAGKLA 364 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEE--------------EEECTTSSBEEEEEGGGHHHHHTTCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEE--------------EEcCCCCCeEEEEEeehhhhhhhcccc
Confidence 466777654 33222222222334577888887764 556666888999998631 11
Q ss_pred ------eEEEEeCCcceeEEEccCCCEEEEE--cCCeEEEEECCC
Q psy6442 75 ------VQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDANS 111 (231)
Q Consensus 75 ------~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~ 111 (231)
....+.+-.+...+|.++| ..+++ -++.+..|++..
T Consensus 365 ~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 365 DPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHH
T ss_pred CcccceEeeccCCCcccEEEECCCC-ceEeeeeecceEEEEeccH
Confidence 2233456678899999999 55544 478899998654
No 328
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=78.35 E-value=25 Score=28.31 Aligned_cols=94 Identities=15% Similarity=0.172 Sum_probs=54.8
Q ss_pred EEecCCCCEEEEecCCCeEEEEeCCCcce--eeec----cCCCCCeeEEEEcCC----CCEEEEee--CCCcEEEEeCCC
Q psy6442 129 LLLNSERPIFVCGGEDLKMYKFDYSTGAE--IESF----KGHFGPIHCVKFSPD----GELYASGS--EDGTLRLWQTNV 196 (231)
Q Consensus 129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~~~--~~~~----~~h~~~V~~v~~spd----~~~laS~s--~d~~v~iwd~~~ 196 (231)
+.+.+++.++++--..++|++++...+.. +..+ .........|+++|+ +.++++-+ .++.|.-|....
T Consensus 37 ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~ 116 (347)
T 3das_A 37 LAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDE 116 (347)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCT
T ss_pred EEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCC
Confidence 34478888877766689999998654432 2222 122456789999996 55656543 344454455443
Q ss_pred C--------Ceeeeeecc---CCcccCCCCCCccccc
Q psy6442 197 G--------KTYGLWKCI---EGGLNNSLGLDSSGHL 222 (231)
Q Consensus 197 ~--------~~~~~~~~~---~~~~~~~~~~~~~~~~ 222 (231)
+ +...+++.. ..+....|.|+.+|++
T Consensus 117 ~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~L 153 (347)
T 3das_A 117 KKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKML 153 (347)
T ss_dssp TSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCE
T ss_pred CCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCE
Confidence 2 122233322 3456667888887753
No 329
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=77.77 E-value=22 Score=27.32 Aligned_cols=138 Identities=11% Similarity=0.089 Sum_probs=65.5
Q ss_pred EEEEeC--CCCEEEEeCCCCCceEEEEeCCc-ceeEEEccCCCEEEEEc-----CCeEEEEECCCcceEEeeeccc--ee
Q psy6442 55 LISCAE--DKTVRLWDVSASAEVQKLEFGAV-PNSLEISRDGTTITVTH-----GSCVTFLDANSLELIKEHKVPA--QV 124 (231)
Q Consensus 55 l~s~s~--D~ti~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~--~~ 124 (231)
++.++. ...+.+||..+++-...-..+.. ....+...++..++++. .+.+..+|..+..-......+. ..
T Consensus 15 ~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 94 (306)
T 3ii7_A 15 IALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDS 94 (306)
T ss_dssp EEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBS
T ss_pred EEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccc
Confidence 344443 35688888877653321111111 11111222333333321 1467778876654332222222 11
Q ss_pred EEEEEEecCCCCEEEEecCC------CeEEEEeCCCcc--eeeeccCCCCCeeEEEEcCCCCEEEEeeC---------CC
Q psy6442 125 HSASLLLNSERPIFVCGGED------LKMYKFDYSTGA--EIESFKGHFGPIHCVKFSPDGELYASGSE---------DG 187 (231)
Q Consensus 125 ~~~~~~~~~~~~~~~~g~~d------~~i~~~d~~~~~--~~~~~~~h~~~V~~v~~spd~~~laS~s~---------d~ 187 (231)
..... -++.+++.|+.+ ..++.||..+.+ .+..+...... .+++. -++.+++.|+. -.
T Consensus 95 ~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 95 LAACA---AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCS-HGMVE-ANGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp CEEEE---ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCEESCTTTCEECC
T ss_pred eeEEE---ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcce-eEEEE-ECCEEEEECCCCCCCCcccccc
Confidence 22222 156677777754 358889987653 22222211111 11222 35667776653 34
Q ss_pred cEEEEeCCCC
Q psy6442 188 TLRLWQTNVG 197 (231)
Q Consensus 188 ~v~iwd~~~~ 197 (231)
.+.+||..+.
T Consensus 170 ~~~~yd~~~~ 179 (306)
T 3ii7_A 170 SCEVYDPATE 179 (306)
T ss_dssp CEEEEETTTT
T ss_pred eEEEeCCCCC
Confidence 5889998875
No 330
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=77.34 E-value=30 Score=28.81 Aligned_cols=102 Identities=12% Similarity=0.209 Sum_probs=55.3
Q ss_pred CcceeEEEccCCCEEEEEcCC-eEEEEECCCcceEEeeecc---------ceeEEEEEEecC----CCCEEEEecC----
Q psy6442 82 AVPNSLEISRDGTTITVTHGS-CVTFLDANSLELIKEHKVP---------AQVHSASLLLNS----ERPIFVCGGE---- 143 (231)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~---------~~~~~~~~~~~~----~~~~~~~g~~---- 143 (231)
..+..+++.|+++.+++...+ .|..++..+.........+ ..... +.++| ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllg--ia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLG--FAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEE--EEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeE--EEECCCcCcCCEEEEEEeccccC
Confidence 457799999999877766554 6887775433322111111 12223 33466 4444444322
Q ss_pred --------CCeEEEEeCCCc-------c-eeeeccC-CCCCeeEEEEcCCCCEEEEeeC
Q psy6442 144 --------DLKMYKFDYSTG-------A-EIESFKG-HFGPIHCVKFSPDGELYASGSE 185 (231)
Q Consensus 144 --------d~~i~~~d~~~~-------~-~~~~~~~-h~~~V~~v~~spd~~~laS~s~ 185 (231)
..+|..++.... + .+..+.. .......|+|.|||.++++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665321 1 1122221 1124688999999998887654
No 331
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=75.99 E-value=4.2 Score=37.61 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=31.1
Q ss_pred CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442 167 PIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL 202 (231)
Q Consensus 167 ~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~ 202 (231)
.+.+++..++..++.+-+.|+++|||++.+++....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 467788888889999999999999999999986543
No 332
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=74.76 E-value=32 Score=27.81 Aligned_cols=178 Identities=11% Similarity=0.103 Sum_probs=97.9
Q ss_pred CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC-CceEEEEe---
Q psy6442 5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS-AEVQKLEF--- 80 (231)
Q Consensus 5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~-~~~~~~~~--- 80 (231)
.++++++.++.+.++++.= ...|..+.|-.+..+. |+| +..|.-|++... .+.+.+.-
T Consensus 87 ~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~--------------lVT---~taVyHWs~~~~s~P~kvFdR~~~ 148 (365)
T 2xzh_A 87 KTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVA--------------LVT---DNAVYHWSMEGESQPVKMFDRHSS 148 (365)
T ss_dssp TEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSEEE--------------EEE---SSEEEEEESSTTCCCEEEEECCGG
T ss_pred CeEEEechHHhhhhcceec-CCccEEEEecCCCeEE--------------EEc---CCcEEEEcccCCCCCceeeecchh
Confidence 4566777776665555443 3567788886543221 444 567999998753 33333332
Q ss_pred --CCcceeEEEccCCCEEEEE----cC----CeEEEEECCCcceEEeeeccceeEEEEEEec--CC-CCEEEEe---cCC
Q psy6442 81 --GAVPNSLEISRDGTTITVT----HG----SCVTFLDANSLELIKEHKVPAQVHSASLLLN--SE-RPIFVCG---GED 144 (231)
Q Consensus 81 --~~~~~~v~~~~~~~~~~~~----~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~g---~~d 144 (231)
..++.+...+++.+.+++. .+ |.+.+|...... .+.++.+.... ..+... +. ..++..+ ...
T Consensus 149 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F-~~~~~~g~~~~~~lf~fa~r~~~g 226 (365)
T 2xzh_A 149 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASF-AQFKMEGNAEESTLFCFAVRGQAG 226 (365)
T ss_dssp GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEE-EEECCTTCSSCEEEEEEEEEETTE
T ss_pred cccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeee-EEEecCCCCCCceEEEEEEecCCC
Confidence 3467777888888876431 12 456667654432 22222211111 011001 11 1122222 122
Q ss_pred CeEEEEeCCCc---ce------eee-c--cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442 145 LKMYKFDYSTG---AE------IES-F--KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL 202 (231)
Q Consensus 145 ~~i~~~d~~~~---~~------~~~-~--~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~ 202 (231)
+++++.++... .. ... + +.-.+-..++..|+....+.--+.-|.|++||+++|..+-.
T Consensus 227 ~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~ 296 (365)
T 2xzh_A 227 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 296 (365)
T ss_dssp EEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEE
Confidence 57888887432 11 111 1 12244566788888888888888999999999999986543
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=73.88 E-value=29 Score=26.81 Aligned_cols=96 Identities=17% Similarity=0.229 Sum_probs=48.5
Q ss_pred eEEEEECCCcceEEeeeccce--eEEEEEEecCCCCEEEEecC-C-----CeEEEEeCCCcc--eeeeccCCCCCeeEEE
Q psy6442 103 CVTFLDANSLELIKEHKVPAQ--VHSASLLLNSERPIFVCGGE-D-----LKMYKFDYSTGA--EIESFKGHFGPIHCVK 172 (231)
Q Consensus 103 ~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~-d-----~~i~~~d~~~~~--~~~~~~~h~~~V~~v~ 172 (231)
.+..+|..+..-......+.+ .+.... .++.+++.|+. + ..++.||..+.+ .+..+...... .+++
T Consensus 118 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~ 193 (315)
T 4asc_A 118 SVMCYDRLSFKWGESDPLPYVVYGHTVLS---HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSL-FGAT 193 (315)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEE---ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE
T ss_pred eEEEECCCCCcEeECCCCCCcccceeEEE---ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhc-eEEE
Confidence 467788766443222222221 122221 24567777765 2 358889887653 22222211111 1222
Q ss_pred EcCCCCEEEEeeCCC-----cEEEEeCCCCCeeeeeeccC
Q psy6442 173 FSPDGELYASGSEDG-----TLRLWQTNVGKTYGLWKCIE 207 (231)
Q Consensus 173 ~spd~~~laS~s~d~-----~v~iwd~~~~~~~~~~~~~~ 207 (231)
.-++.+++.|+.++ .+.+||..+. .|+.+.
T Consensus 194 -~~~~~iyv~GG~~~~~~~~~~~~yd~~~~----~W~~~~ 228 (315)
T 4asc_A 194 -VHDGRIIVAAGVTDTGLTSSAEVYSITDN----KWAPFE 228 (315)
T ss_dssp -EETTEEEEEEEECSSSEEEEEEEEETTTT----EEEEEC
T ss_pred -EECCEEEEEeccCCCCccceEEEEECCCC----eEEECC
Confidence 22667777777554 4788888775 455443
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=71.45 E-value=29 Score=27.27 Aligned_cols=81 Identities=10% Similarity=0.126 Sum_probs=35.7
Q ss_pred CeEEEEECCCcceEEeeeccc--ee-EEEEEEecCCCCEEEEecCC------CeEEEEeC--CCcc--eeeeccCCCCCe
Q psy6442 102 SCVTFLDANSLELIKEHKVPA--QV-HSASLLLNSERPIFVCGGED------LKMYKFDY--STGA--EIESFKGHFGPI 168 (231)
Q Consensus 102 ~~i~~~d~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~g~~d------~~i~~~d~--~~~~--~~~~~~~h~~~V 168 (231)
+.+..+|..+..-......+. .. ..+.. -++.+++.|+.+ ..++.+|+ .+.+ .+..+.......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~---~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~ 244 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN---KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA 244 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE---ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE---ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence 467788876644333222232 11 22222 245667776642 35667765 3322 222221111111
Q ss_pred eEEEEcCCCCEEEEeeC
Q psy6442 169 HCVKFSPDGELYASGSE 185 (231)
Q Consensus 169 ~~v~~spd~~~laS~s~ 185 (231)
...+...++.+++.|+.
T Consensus 245 ~~~~~~~~~~iyv~GG~ 261 (357)
T 2uvk_A 245 GGFAGISNDSLIFAGGA 261 (357)
T ss_dssp SCEEEEETTEEEEECCE
T ss_pred cceEEEECCEEEEEcCc
Confidence 22233345667777763
No 335
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=70.57 E-value=35 Score=26.36 Aligned_cols=147 Identities=15% Similarity=0.210 Sum_probs=68.6
Q ss_pred CCCEEEEEeCC-------CCEEEEeCCCCCceEEEEeCCcc-eeEEEccCCCEEEEEc-------CCeEEEEECCCcceE
Q psy6442 51 NNTRLISCAED-------KTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTITVTH-------GSCVTFLDANSLELI 115 (231)
Q Consensus 51 ~~~~l~s~s~D-------~ti~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~-------~~~i~~~d~~~~~~~ 115 (231)
++..++.++.+ ..+.++|..+.+-...-..+... ...+...++...+.+. .+.+..+|..+..-.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence 45556666654 24667787765433221111111 1112223444333321 135778887665432
Q ss_pred Eeeeccc--eeEEEEEEecCCCCEEEEecCC-----CeEEEEeCCCcc--eeeeccCCCCCeeEEEEcCCCCEEEEeeCC
Q psy6442 116 KEHKVPA--QVHSASLLLNSERPIFVCGGED-----LKMYKFDYSTGA--EIESFKGHFGPIHCVKFSPDGELYASGSED 186 (231)
Q Consensus 116 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~d-----~~i~~~d~~~~~--~~~~~~~h~~~V~~v~~spd~~~laS~s~d 186 (231)
.....+. ....... -++.+++.|+.+ ..++.||..+.+ .+..+...... .++. .-++.+++.|+.+
T Consensus 189 ~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~-~~~~~i~v~GG~~ 263 (318)
T 2woz_A 189 DLAPMKTPRSMFGVAI---HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSS-ISLV-SLAGSLYAIGGFA 263 (318)
T ss_dssp EECCCSSCCBSCEEEE---ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBS-CEEE-EETTEEEEECCBC
T ss_pred ECCCCCCCcccceEEE---ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccc-eEEE-EECCEEEEECCee
Confidence 2222222 1122222 245667777543 357788887653 22222211111 1222 2356677777653
Q ss_pred --------------CcEEEEeCCCCCeeeeeecc
Q psy6442 187 --------------GTLRLWQTNVGKTYGLWKCI 206 (231)
Q Consensus 187 --------------~~v~iwd~~~~~~~~~~~~~ 206 (231)
..+.+||+.+. .|+.+
T Consensus 264 ~~~~~~~~~~~~~~~~v~~yd~~~~----~W~~~ 293 (318)
T 2woz_A 264 MIQLESKEFAPTEVNDIWKYEDDKK----EWAGM 293 (318)
T ss_dssp CBC----CCBCCBCCCEEEEETTTT----EEEEE
T ss_pred ccCCCCceeccceeeeEEEEeCCCC----Eehhh
Confidence 45778888774 46554
No 336
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=70.50 E-value=21 Score=28.45 Aligned_cols=92 Identities=14% Similarity=0.182 Sum_probs=50.9
Q ss_pred EEecCCCC-EEEEecCCCeEEEEeCCCcce---eeec----cCCCCCeeEEEEcCC----CCEEEEeeC-------CCcE
Q psy6442 129 LLLNSERP-IFVCGGEDLKMYKFDYSTGAE---IESF----KGHFGPIHCVKFSPD----GELYASGSE-------DGTL 189 (231)
Q Consensus 129 ~~~~~~~~-~~~~g~~d~~i~~~d~~~~~~---~~~~----~~h~~~V~~v~~spd----~~~laS~s~-------d~~v 189 (231)
+.+.++++ ++++- ..++|++++.. +.. +..+ .........++++|+ +.++++-+. ...|
T Consensus 23 i~~~pdG~~l~V~e-~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v 100 (353)
T 2g8s_A 23 LAFLPDNHGMLITL-RGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAV 100 (353)
T ss_dssp EEECSTTCCEEEEE-TTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEE
T ss_pred EEEcCCCCEEEEEe-CCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEE
Confidence 34478888 66554 56899998753 321 1111 112345689999995 556666443 2345
Q ss_pred EEEeCCCC--C---eeeeeecc-----CCcccCCCCCCccccc
Q psy6442 190 RLWQTNVG--K---TYGLWKCI-----EGGLNNSLGLDSSGHL 222 (231)
Q Consensus 190 ~iwd~~~~--~---~~~~~~~~-----~~~~~~~~~~~~~~~~ 222 (231)
.-|+...+ + ...+++.. ..+....|.++++|++
T Consensus 101 ~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~L 143 (353)
T 2g8s_A 101 GYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYL 143 (353)
T ss_dssp EEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEE
T ss_pred EEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcE
Confidence 55665433 1 11223332 2345667888888753
No 337
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=69.82 E-value=46 Score=30.73 Aligned_cols=101 Identities=17% Similarity=0.160 Sum_probs=51.8
Q ss_pred EEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccC-----CCCCeeEEEEcCC-CCEEEEe---eCCCcEEEEeCCCCC
Q psy6442 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG-----HFGPIHCVKFSPD-GELYASG---SEDGTLRLWQTNVGK 198 (231)
Q Consensus 128 ~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~-----h~~~V~~v~~spd-~~~laS~---s~d~~v~iwd~~~~~ 198 (231)
+....++..++.+-+.|.++|+|++.+++++.+..- ...........|. +.+++.. ..++..++|.+....
T Consensus 240 ~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~~~~~ 319 (950)
T 4gq2_M 240 SMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKLNANA 319 (950)
T ss_dssp EEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEEEEC-
T ss_pred EEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEEecCC
Confidence 333456677888889999999999999987765321 1111112233332 2332221 346677788653222
Q ss_pred e-eeeeeccCCcccCCCCCCccccccceeee
Q psy6442 199 T-YGLWKCIEGGLNNSLGLDSSGHLNNVHEV 228 (231)
Q Consensus 199 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (231)
. +..+...+....-...++.++-.|.+..|
T Consensus 320 ~~~~~~~~~~~~~~~~~~p~~~~~~w~L~DF 350 (950)
T 4gq2_M 320 HSFKLNVVIEKGIIPPSLPDDEFIPWMLSDF 350 (950)
T ss_dssp --CCEEEEESCSCCCCCCCSCTTSCCEEEEE
T ss_pred CceeEEEeccccccCCCCCCcccCCeEEEee
Confidence 1 22333333333333334444444555554
No 338
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.30 E-value=5.9 Score=37.37 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=30.4
Q ss_pred CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442 167 PIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL 202 (231)
Q Consensus 167 ~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~ 202 (231)
.+.+++..++..++.+-+.|+++|||++.+++....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 455667778888999999999999999999987654
No 339
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=64.94 E-value=63 Score=27.27 Aligned_cols=178 Identities=10% Similarity=0.070 Sum_probs=95.3
Q ss_pred CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC-CceEEEEe---
Q psy6442 5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS-AEVQKLEF--- 80 (231)
Q Consensus 5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~-~~~~~~~~--- 80 (231)
.++.+++.++.+.+.++.= ...|..+.|-.+ ..|+-. .+..|.-|++... .++..+.-
T Consensus 86 ~~lQiFnle~K~klks~~~-~e~VvfWkWis~----------------~~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~ 147 (494)
T 1bpo_A 86 KTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL----------------NTVALV-TDNAVYHWSMEGESQPVKMFDRHSS 147 (494)
T ss_dssp TEEEEEETTTTEEEEEEEC-SSCCCEEEEEET----------------TEEEEE-CSSEEEEEESSSSCCCEEEEECCGG
T ss_pred CeEEEEchHHhhhhcceec-CCCceEEEecCC----------------CeEEEE-cCCeeEEecccCCCCchhheecchh
Confidence 3456666666655554432 234556776443 223322 3568999998653 33333332
Q ss_pred --CCcceeEEEccCCCEEEEE----cC----CeEEEEECCCcceEEeeeccceeEEEEEEecCC---CCEEEEec---CC
Q psy6442 81 --GAVPNSLEISRDGTTITVT----HG----SCVTFLDANSLELIKEHKVPAQVHSASLLLNSE---RPIFVCGG---ED 144 (231)
Q Consensus 81 --~~~~~~v~~~~~~~~~~~~----~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~---~d 144 (231)
..++.+...+++.+.+++. .+ |.+.+|....... +.++.+.... ..+..... ..++..+. ..
T Consensus 148 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F-~~~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASF-AQFKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCSEEEE-EEEECTTCSSEEEEEEEEECSTTC
T ss_pred cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chheeeeeee-EEEecCCCCCCceEEEEEEecCCC
Confidence 3467777888998876531 12 4566676544321 1222111110 01111111 11222221 13
Q ss_pred CeEEEEeCCCc---ce------eee-c--cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442 145 LKMYKFDYSTG---AE------IES-F--KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL 202 (231)
Q Consensus 145 ~~i~~~d~~~~---~~------~~~-~--~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~ 202 (231)
+++++.++... .. ... + +.-.+-..++..|+....+.--+.-|.|.+||++++..+-.
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeee
Confidence 67888887432 10 111 1 12344566888999888888889999999999999986543
No 340
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=63.80 E-value=78 Score=27.94 Aligned_cols=138 Identities=15% Similarity=0.172 Sum_probs=73.0
Q ss_pred EEEEEeCCCCEEEEeCCCCCceEEEE-----e-CCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccc-----
Q psy6442 54 RLISCAEDKTVRLWDVSASAEVQKLE-----F-GAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPA----- 122 (231)
Q Consensus 54 ~l~s~s~D~ti~iwd~~~~~~~~~~~-----~-~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----- 122 (231)
.|..+..+ .+..+|..+++.. .+. . ...+.++...+++...+.+. +.+..++....... .+..+.
T Consensus 114 ~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~-~~~~~~~~~~~ 189 (758)
T 3ott_A 114 TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYVGTY-NGLCRYIPSNGKFE-GIPLPVHSSQS 189 (758)
T ss_dssp EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEEEET-TEEEEEETTTTEEE-EECCCCCTTCS
T ss_pred cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEEEeC-CCHhhCccCCCceE-EecCCCccccc
Confidence 44445444 5777887665432 221 1 12456677777777655554 45667776554322 111111
Q ss_pred eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442 123 QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198 (231)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~ 198 (231)
.....++..+.++..+-.|.. +-+..+|..+++......-....|.++...++|.+.+.. .+ -+.+++..+++
T Consensus 190 ~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~~~~~~~ 262 (758)
T 3ott_A 190 NLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DN-GLYVYHNDTTP 262 (758)
T ss_dssp SCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TT-EEEEECCTTSC
T ss_pred cceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CC-ceeEEecCCCc
Confidence 111122333555544344443 357788876654321111123458888888888877654 44 48888876654
No 341
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=60.32 E-value=56 Score=25.12 Aligned_cols=93 Identities=14% Similarity=0.307 Sum_probs=45.0
Q ss_pred eEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCC------CeEEEEeCCCcc--eeeeccCCCCCeeEEEEc
Q psy6442 103 CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGED------LKMYKFDYSTGA--EIESFKGHFGPIHCVKFS 174 (231)
Q Consensus 103 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d------~~i~~~d~~~~~--~~~~~~~h~~~V~~v~~s 174 (231)
.+..+|..+..-......+.+....+.. ..++.+.+.|+.+ ..++.||..+.+ .+..+...... .+++.
T Consensus 128 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~- 204 (318)
T 2woz_A 128 SVLCYDPVAAKWSEVKNLPIKVYGHNVI-SHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM-FGVAI- 204 (318)
T ss_dssp EEEEEETTTTEEEEECCCSSCEESCEEE-EETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-
T ss_pred eEEEEeCCCCCEeECCCCCCcccccEEE-EECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc-ceEEE-
Confidence 4567787654433222222221111111 1356677777642 358889987653 22222211111 12222
Q ss_pred CCCCEEEEeeCC-----CcEEEEeCCCCC
Q psy6442 175 PDGELYASGSED-----GTLRLWQTNVGK 198 (231)
Q Consensus 175 pd~~~laS~s~d-----~~v~iwd~~~~~ 198 (231)
-++.+++.|+.+ ..+.+||+.+.+
T Consensus 205 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 205 HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 256777777643 346788887753
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=60.07 E-value=91 Score=27.48 Aligned_cols=146 Identities=12% Similarity=0.094 Sum_probs=74.0
Q ss_pred CCCEEEEEeCC----CCEEEEeCCCCCceEEE-E-----eCC-c-ceeEEEcc-CCCEEEEEc-------CCeEEEEECC
Q psy6442 51 NNTRLISCAED----KTVRLWDVSASAEVQKL-E-----FGA-V-PNSLEISR-DGTTITVTH-------GSCVTFLDAN 110 (231)
Q Consensus 51 ~~~~l~s~s~D----~ti~iwd~~~~~~~~~~-~-----~~~-~-~~~v~~~~-~~~~~~~~~-------~~~i~~~d~~ 110 (231)
++..++.||.+ ..+.+||..+++-...- . ... . -.+++..+ ++..++++. -+.+..+|..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 34555566543 45778888776543322 1 111 1 12333332 444433321 1346678876
Q ss_pred CcceEEeeeccc--eeEEEEEEecCCCCEEEEecCCC--eEEEEeCCCcc--eeee---ccCCCCCeeEEEEcCC-CCEE
Q psy6442 111 SLELIKEHKVPA--QVHSASLLLNSERPIFVCGGEDL--KMYKFDYSTGA--EIES---FKGHFGPIHCVKFSPD-GELY 180 (231)
Q Consensus 111 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~d~--~i~~~d~~~~~--~~~~---~~~h~~~V~~v~~spd-~~~l 180 (231)
+..-......+. ..+..+. -.++.+++.|+.+. .++.||..+.. .+.. +......-..+.+..+ +.++
T Consensus 477 t~~W~~~~~~p~~R~~h~~~~--~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 477 TREWSMIKSLSHTRFRHSACS--LPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTEEEECCCCSBCCBSCEEEE--CTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCcEEECCCCCCCcccceEEE--EcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 643322222222 1222222 23777888887654 68899887653 1211 2111111223555665 6777
Q ss_pred EEeeC--C-----CcEEEEeCCCCC
Q psy6442 181 ASGSE--D-----GTLRLWQTNVGK 198 (231)
Q Consensus 181 aS~s~--d-----~~v~iwd~~~~~ 198 (231)
+.|+. + +.+.+||+.+.+
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EECCcCCCCCeeeCcEEEEEccCCc
Confidence 77765 2 458889988876
No 343
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=57.65 E-value=11 Score=33.63 Aligned_cols=31 Identities=16% Similarity=0.430 Sum_probs=27.1
Q ss_pred CCCEEEEEeCCCCEEEEeCCCCCceEEEEeC
Q psy6442 51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFG 81 (231)
Q Consensus 51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~ 81 (231)
+...|++-+.|+++|+|++.+++++.+..+.
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~ 260 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQDYDMV 260 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEEETT
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEEeeccc
Confidence 4678999999999999999999998887763
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=57.51 E-value=1e+02 Score=27.20 Aligned_cols=146 Identities=12% Similarity=0.093 Sum_probs=69.9
Q ss_pred CCCEEEEEeCCC------CEEEEeCCCCCceEEEEeCCc--ceeEEEccCCCEEEEEc-C--CeEEEEECCCcceEEeee
Q psy6442 51 NNTRLISCAEDK------TVRLWDVSASAEVQKLEFGAV--PNSLEISRDGTTITVTH-G--SCVTFLDANSLELIKEHK 119 (231)
Q Consensus 51 ~~~~l~s~s~D~------ti~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~-~--~~i~~~d~~~~~~~~~~~ 119 (231)
++..++.||.++ .+.+||..+.+-...-..+.. -.+++...++...+.+. + ..+..||..+..-.....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence 445555665432 467788776533221111111 11233323555544432 1 167888877644322211
Q ss_pred ---ccce--eEEEEEEecCC-CCEEEEecC--C-----CeEEEEeCCCcc--------eeeeccCCCCCeeEEEEcCCCC
Q psy6442 120 ---VPAQ--VHSASLLLNSE-RPIFVCGGE--D-----LKMYKFDYSTGA--------EIESFKGHFGPIHCVKFSPDGE 178 (231)
Q Consensus 120 ---~~~~--~~~~~~~~~~~-~~~~~~g~~--d-----~~i~~~d~~~~~--------~~~~~~~h~~~V~~v~~spd~~ 178 (231)
.+.+ .... ...... +.+++.|+. + ..++.||+.+.. .+.........-.++....++.
T Consensus 531 ~g~~p~~r~~~~a-~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~ 609 (695)
T 2zwa_A 531 KDEFFQNSLVSAG-LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK 609 (695)
T ss_dssp SSGGGGSCCBSCE-EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred CCCCCCcccceeE-EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence 2211 1111 222333 667777765 2 358889987655 1112110111112333334467
Q ss_pred EEEEeeC--------CCcEEEEeCCCC
Q psy6442 179 LYASGSE--------DGTLRLWQTNVG 197 (231)
Q Consensus 179 ~laS~s~--------d~~v~iwd~~~~ 197 (231)
+++.|+. ...|.+||..+.
T Consensus 610 iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 610 LLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp EEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred EEEECCccCCCCCCCCCeEEEEECCCC
Confidence 7777774 356899998875
No 345
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=57.46 E-value=11 Score=35.45 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=27.1
Q ss_pred CCCEEEEEeCCCCEEEEeCCCCCceEEEEeC
Q psy6442 51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFG 81 (231)
Q Consensus 51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~ 81 (231)
+...|+|-+.|+++|||++.+++++.+..+.
T Consensus 248 ~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 248 TYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp TTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred CccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 5578999999999999999999998887653
No 346
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=56.97 E-value=16 Score=32.60 Aligned_cols=31 Identities=6% Similarity=0.083 Sum_probs=25.9
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442 175 PDGELYASGSEDGTLRLWQTNVGKTYGLWKC 205 (231)
Q Consensus 175 pd~~~laS~s~d~~v~iwd~~~~~~~~~~~~ 205 (231)
.+..++++-+.|.++|+|++.+++....-..
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3467999999999999999999987765544
No 347
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=56.79 E-value=61 Score=24.48 Aligned_cols=94 Identities=13% Similarity=0.119 Sum_probs=49.7
Q ss_pred eeEEEccCCCEEEEEcCCeEEEEECCCcce-E-----Eeeec-c-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc
Q psy6442 85 NSLEISRDGTTITVTHGSCVTFLDANSLEL-I-----KEHKV-P-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA 156 (231)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~-~-----~~~~~-~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~ 156 (231)
..+.+.|++.+-++ .++.|..++..+... . ..... . ..+. .+.+.|++.+.+.. ++.++.....++.
T Consensus 91 ~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~--~lff~p~G~Lyav~--dg~lyr~~~P~~~ 165 (236)
T 1tl2_A 91 QFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFK--FLFFHPNGYLYAVH--GQQFYKALPPVSN 165 (236)
T ss_dssp SEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEE--EEEECTTSCEEEEE--TTEEEEECCCSST
T ss_pred eEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceE--EEEECCCceEEEEe--CCcEEecCCCCCC
Confidence 67889999987666 557887776532111 0 00000 0 1222 34458888876665 7776654333221
Q ss_pred e-----eeecc--CCCCCeeEEEEcCCCCEEEEe
Q psy6442 157 E-----IESFK--GHFGPIHCVKFSPDGELYASG 183 (231)
Q Consensus 157 ~-----~~~~~--~h~~~V~~v~~spd~~~laS~ 183 (231)
. ..+.. +....-+.+.|.|++.+++..
T Consensus 166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 166 QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred CcccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence 0 11111 122234457788888877655
No 348
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=51.30 E-value=1.9e+02 Score=28.52 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=28.1
Q ss_pred CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442 166 GPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY 200 (231)
Q Consensus 166 ~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~ 200 (231)
+-..++..|+....+.--+.-|.|.++|+.+|..+
T Consensus 259 Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 259 DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred CcceEEEeccccCEEEEEecCceEEEEecccchhh
Confidence 33456788887777778888999999999999854
No 349
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=51.25 E-value=85 Score=24.46 Aligned_cols=56 Identities=13% Similarity=-0.014 Sum_probs=28.1
Q ss_pred eEEEEeCCCcc--eeeeccCCCCCeeEEEEcCCCCEEEEeeCCC------cEEEEeCCCCCeeeee
Q psy6442 146 KMYKFDYSTGA--EIESFKGHFGPIHCVKFSPDGELYASGSEDG------TLRLWQTNVGKTYGLW 203 (231)
Q Consensus 146 ~i~~~d~~~~~--~~~~~~~h~~~V~~v~~spd~~~laS~s~d~------~v~iwd~~~~~~~~~~ 203 (231)
.+.+||+.+.+ .+..+...... ..+...++++++.|+.++ .|.++++.++|..++-
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 46788876543 33333322111 122334677777787543 3455588887766543
No 350
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=41.81 E-value=2.3e+02 Score=26.82 Aligned_cols=105 Identities=12% Similarity=0.194 Sum_probs=62.1
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCc--eEEEEeCCcceeEEEccC------CCEEEEEc--CCeEEEEECCCcceEEeeecc
Q psy6442 52 NTRLISCAEDKTVRLWDVSASAE--VQKLEFGAVPNSLEISRD------GTTITVTH--GSCVTFLDANSLELIKEHKVP 121 (231)
Q Consensus 52 ~~~l~s~s~D~ti~iwd~~~~~~--~~~~~~~~~~~~v~~~~~------~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~ 121 (231)
+.+++.++ ++.+.++.+..++. ....++...+.++++.|. ...++++. ++.++++++.+.+.+.....+
T Consensus 523 ~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~ 601 (1158)
T 3ei3_A 523 SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLG 601 (1158)
T ss_dssp SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECC
Confidence 34555554 56777776654432 233455677888888753 24566654 679999999877666554442
Q ss_pred c--eeEEEEEEecCCCCEEEEecCCCeEEEE--eCCCcce
Q psy6442 122 A--QVHSASLLLNSERPIFVCGGEDLKMYKF--DYSTGAE 157 (231)
Q Consensus 122 ~--~~~~~~~~~~~~~~~~~~g~~d~~i~~~--d~~~~~~ 157 (231)
. ....+.+........+..|-.||.+..+ |..++++
T Consensus 602 ~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l 641 (1158)
T 3ei3_A 602 GEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLL 641 (1158)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCE
T ss_pred CCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCcc
Confidence 2 2233333222344567788888886544 4445544
No 351
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=41.60 E-value=1.1e+02 Score=26.50 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=34.5
Q ss_pred ecCCCCEEEEecCC------------CeEEEEeCCCcceeeeccCCC-CCeeEEEEcCCCCEEEEe
Q psy6442 131 LNSERPIFVCGGED------------LKMYKFDYSTGAEIESFKGHF-GPIHCVKFSPDGELYASG 183 (231)
Q Consensus 131 ~~~~~~~~~~g~~d------------~~i~~~d~~~~~~~~~~~~h~-~~V~~v~~spd~~~laS~ 183 (231)
+++.+.+++.-..+ ..++..+..+++...-+.++. ++++.++|+||++.|...
T Consensus 483 fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 483 FDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp ECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred ECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 36777766654322 245666766676554445543 689999999999866543
No 352
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=40.74 E-value=1.4e+02 Score=23.93 Aligned_cols=121 Identities=9% Similarity=0.143 Sum_probs=61.0
Q ss_pred CCeEEEEECCCc--ce--EEeeec-----cceeEEEEEEecCCC--CEEEEecC--CCeEEEEeCCC--cc--eeeeccC
Q psy6442 101 GSCVTFLDANSL--EL--IKEHKV-----PAQVHSASLLLNSER--PIFVCGGE--DLKMYKFDYST--GA--EIESFKG 163 (231)
Q Consensus 101 ~~~i~~~d~~~~--~~--~~~~~~-----~~~~~~~~~~~~~~~--~~~~~g~~--d~~i~~~d~~~--~~--~~~~~~~ 163 (231)
.+.|.++|.... +. +..... ....+.+.+..+.++ .++++-.. +.+|.+|++.. +. .+.++.+
T Consensus 82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g 161 (355)
T 3sre_A 82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 161 (355)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc
Confidence 567788887632 21 111110 123334444333233 24444333 45566665533 22 2345554
Q ss_pred CC-CCeeEEEEcCCCCEEEEeeC---C------------CcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccccc
Q psy6442 164 HF-GPIHCVKFSPDGELYASGSE---D------------GTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLN 223 (231)
Q Consensus 164 h~-~~V~~v~~spd~~~laS~s~---d------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (231)
.. ...+++.+.|+|+++++... | ..=+||.+..++...+.+. =..+|-|+++++++.+
T Consensus 162 ~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~--l~~pNGia~spDg~~l 235 (355)
T 3sre_A 162 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEG--FDFANGINISPDGKYV 235 (355)
T ss_dssp TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEE--ESSEEEEEECTTSSEE
T ss_pred CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecC--CcccCcceECCCCCEE
Confidence 32 45789999999998887651 1 2234444433433222332 2456778888877544
No 353
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=35.09 E-value=1.1e+02 Score=26.28 Aligned_cols=79 Identities=16% Similarity=0.097 Sum_probs=50.9
Q ss_pred CCCEEEEecCCCeEEEEeCCCc----ceeeecc--CCCCCee-EEEEcCCCCEEEEeeCCCcEEEE------------eC
Q psy6442 134 ERPIFVCGGEDLKMYKFDYSTG----AEIESFK--GHFGPIH-CVKFSPDGELYASGSEDGTLRLW------------QT 194 (231)
Q Consensus 134 ~~~~~~~g~~d~~i~~~d~~~~----~~~~~~~--~h~~~V~-~v~~spd~~~laS~s~d~~v~iw------------d~ 194 (231)
+...+..|..+|+|+..-+... ..+.++. ....+|. .|.++++..+|..++..+.++|= .+
T Consensus 412 ~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kvpl~~C~~y~sC~~Cl 491 (539)
T 3al9_A 412 GYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRVPVESCEQYTTCGECL 491 (539)
T ss_dssp TEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEEESCCGGGCCSHHHHT
T ss_pred CeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEeccccceeehhhCcCcCCHHHHh
Confidence 3445667888898776654322 1233322 2346785 99999999999989988877762 13
Q ss_pred CCCCeeeeeeccCCcccC
Q psy6442 195 NVGKTYGLWKCIEGGLNN 212 (231)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~ 212 (231)
..+.++..|....+.+..
T Consensus 492 ~arDPyCgWc~~~~~C~~ 509 (539)
T 3al9_A 492 SSGDPHCGWCALHNMCSR 509 (539)
T ss_dssp TSCCTTCEEEGGGTEEEC
T ss_pred cCCCCCCceecCCCceec
Confidence 455677888765555443
No 354
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=34.21 E-value=1.9e+02 Score=25.21 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=0.0
Q ss_pred EEecCCCCEEEEecCCC------------eEEEEeCCCcceeeeccCC-CCCeeEEEEcCCCCEEEEe
Q psy6442 129 LLLNSERPIFVCGGEDL------------KMYKFDYSTGAEIESFKGH-FGPIHCVKFSPDGELYASG 183 (231)
Q Consensus 129 ~~~~~~~~~~~~g~~d~------------~i~~~d~~~~~~~~~~~~h-~~~V~~v~~spd~~~laS~ 183 (231)
+.+++++.+.+...... .++.++..+++...-+.+. ...++.++||||++.|..+
T Consensus 481 L~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=33.69 E-value=2.1e+02 Score=23.85 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=21.8
Q ss_pred CcceeEEEccCCC--EEEEEcCCeEEEEECC
Q psy6442 82 AVPNSLEISRDGT--TITVTHGSCVTFLDAN 110 (231)
Q Consensus 82 ~~~~~v~~~~~~~--~~~~~~~~~i~~~d~~ 110 (231)
..+..+++.|++. .+++-..+.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 4678889999985 6666667888888753
No 356
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=32.25 E-value=1.5e+02 Score=25.13 Aligned_cols=56 Identities=16% Similarity=0.174 Sum_probs=36.7
Q ss_pred CEEEEecCCCeEEEEeCC-Cc-------ceeeecc--CCCCCeeEEEEcCCCCEEEEeeCCCcEEE
Q psy6442 136 PIFVCGGEDLKMYKFDYS-TG-------AEIESFK--GHFGPIHCVKFSPDGELYASGSEDGTLRL 191 (231)
Q Consensus 136 ~~~~~g~~d~~i~~~d~~-~~-------~~~~~~~--~h~~~V~~v~~spd~~~laS~s~d~~v~i 191 (231)
.++..|..+|+|+..-+. .+ ..+.++. ....+|..|.++++..+|..++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 345677888887654332 11 1222332 23578999999999999998998887665
No 357
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=31.60 E-value=2.1e+02 Score=23.25 Aligned_cols=161 Identities=11% Similarity=0.147 Sum_probs=0.0
Q ss_pred CEEEEeCCCC--CceEEEEeC-------CcceeEEEc---cC----CCEEEEEcCC--eEEEEECCCcceEEeeecccee
Q psy6442 63 TVRLWDVSAS--AEVQKLEFG-------AVPNSLEIS---RD----GTTITVTHGS--CVTFLDANSLELIKEHKVPAQV 124 (231)
Q Consensus 63 ti~iwd~~~~--~~~~~~~~~-------~~~~~v~~~---~~----~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~ 124 (231)
+|.+||+.+. +.++.+.++ ....++.+. |. +..++++..+ .|.++|..+.+..+........
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Q ss_pred -----------------EEEEEEecCC----CCEEEEecCCC-eEEEEe---CCCcceeeecc-----CCCCCeeEEEEc
Q psy6442 125 -----------------HSASLLLNSE----RPIFVCGGEDL-KMYKFD---YSTGAEIESFK-----GHFGPIHCVKFS 174 (231)
Q Consensus 125 -----------------~~~~~~~~~~----~~~~~~g~~d~-~i~~~d---~~~~~~~~~~~-----~h~~~V~~v~~s 174 (231)
....+..+|+ ++.|....-.+ +++-.. ++.......++ +-...-..+++.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Q ss_pred -CCCCEEEEeeCCCcEEEEeCCC-----CCeeeeeeccCCcccCCCCCCcccccc
Q psy6442 175 -PDGELYASGSEDGTLRLWQTNV-----GKTYGLWKCIEGGLNNSLGLDSSGHLN 223 (231)
Q Consensus 175 -pd~~~laS~s~d~~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (231)
.+|.++.+--..+.|..|+... +...-+.+.-.=.++..++++.+|++|
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lw 338 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLW 338 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEE
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEE
No 358
>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
Probab=30.53 E-value=7.3 Score=28.30 Aligned_cols=62 Identities=16% Similarity=0.189 Sum_probs=36.0
Q ss_pred CeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCeeee---eeccCCcccCCCCCCccccccceeeee
Q psy6442 167 PIHCVKFSPDG-ELYASGSEDGTLRLWQTNVGKTYGL---WKCIEGGLNNSLGLDSSGHLNNVHEVI 229 (231)
Q Consensus 167 ~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (231)
-+.++.|.+.+ +-+++.+.++++.+||..-|+..-. ......++++.- -.+++|++-|.||.
T Consensus 120 hllsl~f~~g~aHaia~S~~g~~~tlFDPN~GEF~v~s~~~~dliqsL~~rY-~~~n~h~~~v~~~~ 185 (188)
T 1ukf_A 120 HLLSLRFANVQGHAIACSCEGSQFKLFDPNLGEFQSSRSAAPQLIKGLIDHY-NSLNYDVACVNEFR 185 (188)
T ss_dssp EEEEEEETTTEEEEEEEEEETTEEEEEETTTEEEEEETTTHHHHHHHHHHHH-HHTTCCEEEEEEEE
T ss_pred eEEEEEecCCCceeEEeccCCCeEEEeCCCCceeeccHHHHHHHHHHHHHhc-cCCcccceeeeeeE
Confidence 35556666543 3555566789999999988875321 111111122211 23468999998874
No 359
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=27.92 E-value=3.1e+02 Score=24.04 Aligned_cols=141 Identities=12% Similarity=0.059 Sum_probs=74.8
Q ss_pred EEEEeCCCCEEEEeCCCCCceEEEEe-------CCcceeEEEccCCCEEEEEcCCeEEEEECCCc-----ceE---Eeee
Q psy6442 55 LISCAEDKTVRLWDVSASAEVQKLEF-------GAVPNSLEISRDGTTITVTHGSCVTFLDANSL-----ELI---KEHK 119 (231)
Q Consensus 55 l~s~s~D~ti~iwd~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~-----~~~---~~~~ 119 (231)
|-.|. ++-+..+|..+++....... ...+.++...+++...+.+.++.+..++.... ... ..+.
T Consensus 386 lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~ 464 (758)
T 3ott_A 386 LWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYS 464 (758)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEEC
T ss_pred EEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccc
Confidence 44444 45688899877654332211 12355666666666655555566777774321 111 1111
Q ss_pred cc--c-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeecc-C--CCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442 120 VP--A-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK-G--HFGPIHCVKFSPDGELYASGSEDGTLRLWQ 193 (231)
Q Consensus 120 ~~--~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~-~--h~~~V~~v~~spd~~~laS~s~d~~v~iwd 193 (231)
.. . .....++..++++.+.+.++...-+..+|..+++...... . ....+.++....+|++.++. ..| +..++
T Consensus 465 ~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~ 542 (758)
T 3ott_A 465 VHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRIN 542 (758)
T ss_dssp GGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEEC
T ss_pred cccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEe
Confidence 11 1 1112234446777766533334457788887654332211 1 12467888888889887654 444 88888
Q ss_pred CCCCC
Q psy6442 194 TNVGK 198 (231)
Q Consensus 194 ~~~~~ 198 (231)
..+++
T Consensus 543 ~~~~~ 547 (758)
T 3ott_A 543 PKDES 547 (758)
T ss_dssp C--CC
T ss_pred cCCCc
Confidence 76654
No 360
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=25.88 E-value=2.3e+02 Score=24.64 Aligned_cols=56 Identities=9% Similarity=0.010 Sum_probs=37.3
Q ss_pred EEEEecCCCeEEEEeCCC-c----c-eeeecc--CCCCCeeEEEEcCCCCEEEEeeCCCcEEEE
Q psy6442 137 IFVCGGEDLKMYKFDYST-G----A-EIESFK--GHFGPIHCVKFSPDGELYASGSEDGTLRLW 192 (231)
Q Consensus 137 ~~~~g~~d~~i~~~d~~~-~----~-~~~~~~--~h~~~V~~v~~spd~~~laS~s~d~~v~iw 192 (231)
++..|..+|+|+..-... + . .+..+. ....+|..|.++++...|..++.++.++|-
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEcc
Confidence 455677888876543321 2 1 122222 245789999999998888888888877775
No 361
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=20.17 E-value=4e+02 Score=22.71 Aligned_cols=78 Identities=10% Similarity=0.073 Sum_probs=48.2
Q ss_pred CCCEEEEecCCCeEEEEeCC-Cc--ceeeecc-CCCCCe-eEEEEcCCCCEEEEeeCCCcEEEEeCC------------C
Q psy6442 134 ERPIFVCGGEDLKMYKFDYS-TG--AEIESFK-GHFGPI-HCVKFSPDGELYASGSEDGTLRLWQTN------------V 196 (231)
Q Consensus 134 ~~~~~~~g~~d~~i~~~d~~-~~--~~~~~~~-~h~~~V-~~v~~spd~~~laS~s~d~~v~iwd~~------------~ 196 (231)
+..++..|..+|+|+..-.. .+ ..+..+. ....+| ..|.++++...|..++..+.++|-=.+ .
T Consensus 399 g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~vpl~~C~~y~sC~~Cl~A 478 (528)
T 3ol2_B 399 GHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKVPVASCAQHLDCASCLAH 478 (528)
T ss_dssp TEEEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEEESCCGGGCCSHHHHHHS
T ss_pred CeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEEEhhhCcCcCcHhHHhhC
Confidence 34455678888988765443 21 1222221 345678 489999999888889988888875322 2
Q ss_pred CCeeeeeeccCCccc
Q psy6442 197 GKTYGLWKCIEGGLN 211 (231)
Q Consensus 197 ~~~~~~~~~~~~~~~ 211 (231)
+.++..|....+.++
T Consensus 479 rDPyCgW~~~~~~Cs 493 (528)
T 3ol2_B 479 RDPYCGWCVLLGRCS 493 (528)
T ss_dssp CCTTCEEETTTTEEE
T ss_pred CCCCCcccCCCCeec
Confidence 445667765444433
Done!