Query psy6444
Match_columns 88
No_of_seqs 100 out of 1048
Neff 11.6
Searched_HMMs 29240
Date Fri Aug 16 18:04:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h5i_A Guanine nucleotide-exch 99.8 3E-19 1E-23 101.5 12.1 78 8-88 262-340 (365)
2 2ymu_A WD-40 repeat protein; u 99.8 2.7E-18 9.1E-23 101.3 11.0 78 7-88 8-85 (577)
3 3vu4_A KMHSV2; beta-propeller 99.8 1.4E-17 4.8E-22 94.3 12.2 78 8-88 188-268 (355)
4 4aow_A Guanine nucleotide-bind 99.8 1.2E-17 4.3E-22 92.9 11.6 81 6-88 29-114 (340)
5 3ow8_A WD repeat-containing pr 99.8 2.3E-17 7.7E-22 92.5 12.5 82 4-88 237-318 (321)
6 3frx_A Guanine nucleotide-bind 99.8 1.6E-17 5.6E-22 92.8 11.5 80 6-88 56-135 (319)
7 3ow8_A WD repeat-containing pr 99.8 2.3E-17 7.9E-22 92.4 11.7 82 4-88 195-276 (321)
8 2xzm_R RACK1; ribosome, transl 99.8 2.3E-17 8E-22 92.8 11.7 81 5-88 66-146 (343)
9 1got_B GT-beta; complex (GTP-b 99.8 5.8E-17 2E-21 91.2 12.8 82 4-88 173-254 (340)
10 2ynn_A Coatomer subunit beta'; 99.8 5.2E-17 1.8E-21 90.2 11.8 82 4-88 44-125 (304)
11 2ymu_A WD-40 repeat protein; u 99.7 3.3E-17 1.1E-21 96.7 11.2 81 4-88 497-577 (577)
12 4ery_A WD repeat-containing pr 99.7 1.4E-16 4.8E-21 88.4 13.1 82 4-88 12-93 (312)
13 1vyh_C Platelet-activating fac 99.7 5.4E-17 1.8E-21 93.4 11.0 82 4-88 139-220 (410)
14 2ynn_A Coatomer subunit beta'; 99.7 2.6E-17 8.8E-22 91.5 9.4 80 6-88 4-83 (304)
15 3iz6_a 40S ribosomal protein R 99.7 1.8E-17 6.2E-22 94.5 8.7 82 4-88 55-136 (380)
16 1vyh_C Platelet-activating fac 99.7 6.2E-17 2.1E-21 93.1 10.8 82 4-88 327-408 (410)
17 1nr0_A Actin interacting prote 99.7 1.8E-16 6.2E-21 94.9 12.8 82 4-88 179-267 (611)
18 4g56_B MGC81050 protein; prote 99.7 8.9E-17 3E-21 91.1 10.7 81 4-88 258-340 (357)
19 4gqb_B Methylosome protein 50; 99.7 1.9E-16 6.5E-21 89.6 11.9 76 10-88 122-198 (344)
20 2hes_X YDR267CP; beta-propelle 99.7 2.4E-16 8.3E-21 88.4 11.8 80 6-88 98-181 (330)
21 3zwl_B Eukaryotic translation 99.7 4.8E-16 1.6E-20 87.1 12.9 80 6-88 23-102 (369)
22 1got_B GT-beta; complex (GTP-b 99.7 3.9E-16 1.3E-20 87.8 12.3 80 6-88 46-125 (340)
23 2pm7_B Protein transport prote 99.7 1.8E-16 6E-21 87.9 10.6 78 8-88 2-83 (297)
24 2pbi_B Guanine nucleotide-bind 99.7 6.3E-16 2.1E-20 87.6 12.6 84 4-88 185-268 (354)
25 3dm0_A Maltose-binding peripla 99.7 4.2E-16 1.4E-20 94.3 11.9 80 6-88 421-500 (694)
26 3frx_A Guanine nucleotide-bind 99.7 2.3E-16 7.8E-21 88.2 9.7 80 7-88 9-93 (319)
27 3fm0_A Protein CIAO1; WDR39,SG 99.7 3.3E-16 1.1E-20 88.3 10.4 85 1-88 1-89 (345)
28 4ery_A WD repeat-containing pr 99.7 1.1E-15 3.8E-20 84.8 12.4 82 4-88 54-135 (312)
29 3vl1_A 26S proteasome regulato 99.7 6.4E-16 2.2E-20 88.3 10.9 82 4-88 128-209 (420)
30 2xzm_R RACK1; ribosome, transl 99.7 3.8E-16 1.3E-20 87.9 9.7 81 6-88 12-104 (343)
31 4gqb_B Methylosome protein 50; 99.7 8.7E-16 3E-20 86.9 11.1 81 4-88 246-328 (344)
32 3jrp_A Fusion protein of prote 99.7 2.5E-16 8.5E-21 88.6 8.1 81 5-88 1-85 (379)
33 2pbi_B Guanine nucleotide-bind 99.7 1.7E-15 5.9E-20 85.7 11.1 80 6-88 55-134 (354)
34 3bg1_A Protein SEC13 homolog; 99.7 4.8E-16 1.7E-20 86.8 8.5 77 9-88 7-87 (316)
35 1nr0_A Actin interacting prote 99.7 1.5E-15 5E-20 91.0 11.0 80 6-88 138-218 (611)
36 3fm0_A Protein CIAO1; WDR39,SG 99.7 2.7E-15 9.2E-20 84.6 11.4 75 11-88 57-133 (345)
37 3mmy_A MRNA export factor; mRN 99.7 2.2E-15 7.5E-20 84.4 10.8 81 5-88 29-114 (368)
38 3iz6_a 40S ribosomal protein R 99.7 2.1E-15 7.3E-20 85.9 10.9 75 12-88 202-277 (380)
39 4ggc_A P55CDC, cell division c 99.7 6.7E-15 2.3E-19 81.3 12.5 73 13-88 238-312 (318)
40 2hes_X YDR267CP; beta-propelle 99.7 3.1E-15 1.1E-19 83.9 11.3 80 6-88 144-227 (330)
41 3k26_A Polycomb protein EED; W 99.7 5.7E-15 2E-19 82.7 12.3 83 4-88 104-189 (366)
42 3f3f_A Nucleoporin SEH1; struc 99.7 2.2E-15 7.6E-20 83.5 10.3 78 8-88 4-87 (351)
43 1erj_A Transcriptional repress 99.7 6.4E-15 2.2E-19 84.3 12.2 69 17-88 125-193 (393)
44 4e54_B DNA damage-binding prot 99.7 7.5E-16 2.6E-20 89.0 8.4 78 9-88 113-193 (435)
45 4gga_A P55CDC, cell division c 99.7 1.1E-14 3.8E-19 83.8 13.1 80 5-88 311-392 (420)
46 4gq1_A NUP37; propeller, trans 99.7 3.6E-16 1.2E-20 89.6 6.8 81 8-88 129-215 (393)
47 3f3f_A Nucleoporin SEH1; struc 99.7 2.9E-15 9.9E-20 83.1 10.2 79 7-88 206-334 (351)
48 2pm7_B Protein transport prote 99.7 3.7E-15 1.3E-19 82.5 10.5 81 6-88 44-129 (297)
49 2aq5_A Coronin-1A; WD40 repeat 99.7 5.7E-15 1.9E-19 84.4 11.5 80 6-88 122-204 (402)
50 4g56_B MGC81050 protein; prote 99.6 1.3E-14 4.5E-19 82.3 12.1 76 10-88 134-210 (357)
51 1erj_A Transcriptional repress 99.6 7.4E-15 2.5E-19 84.0 10.8 80 6-88 301-386 (393)
52 3bg1_A Protein SEC13 homolog; 99.6 4.6E-15 1.6E-19 82.8 9.7 80 7-88 49-133 (316)
53 2aq5_A Coronin-1A; WD40 repeat 99.6 5.1E-15 1.8E-19 84.6 9.8 79 7-88 73-160 (402)
54 4aow_A Guanine nucleotide-bind 99.6 2.4E-14 8.1E-19 79.7 12.1 82 4-88 204-334 (340)
55 3dm0_A Maltose-binding peripla 99.6 8.9E-15 3E-19 88.6 11.1 80 7-88 374-458 (694)
56 3sfz_A APAF-1, apoptotic pepti 99.6 1.4E-14 4.9E-19 91.6 12.4 79 7-88 607-685 (1249)
57 2oit_A Nucleoporin 214KDA; NH2 99.6 5.8E-15 2E-19 85.8 9.7 79 8-88 142-220 (434)
58 3mkq_A Coatomer beta'-subunit; 99.6 2.3E-14 7.8E-19 87.4 11.9 82 4-88 44-125 (814)
59 3dwl_C Actin-related protein 2 99.6 4.9E-15 1.7E-19 83.7 8.4 80 6-88 46-128 (377)
60 3mkq_A Coatomer beta'-subunit; 99.6 6.5E-15 2.2E-19 89.8 9.4 80 6-88 4-83 (814)
61 3gre_A Serine/threonine-protei 99.6 1.2E-14 4.1E-19 83.6 9.7 81 4-88 51-139 (437)
62 3odt_A Protein DOA1; ubiquitin 99.6 2.3E-14 8E-19 78.9 10.4 80 5-88 8-87 (313)
63 2w18_A PALB2, fancn, partner a 99.6 3E-14 1E-18 81.0 10.9 59 30-88 295-354 (356)
64 1sq9_A Antiviral protein SKI8; 99.6 3.8E-14 1.3E-18 80.4 11.5 82 4-88 267-392 (397)
65 2pm9_A Protein WEB1, protein t 99.6 1.1E-14 3.9E-19 82.9 9.0 81 6-88 252-334 (416)
66 1pgu_A Actin interacting prote 99.6 1.6E-14 5.6E-19 85.5 9.8 81 4-88 519-611 (615)
67 3odt_A Protein DOA1; ubiquitin 99.6 7.5E-14 2.6E-18 76.9 11.2 80 4-88 214-293 (313)
68 3ei3_B DNA damage-binding prot 99.6 4.4E-14 1.5E-18 80.1 10.5 81 5-88 63-147 (383)
69 3jrp_A Fusion protein of prote 99.6 4.6E-14 1.6E-18 79.4 10.4 82 4-88 44-131 (379)
70 1sq9_A Antiviral protein SKI8; 99.6 7.7E-14 2.6E-18 79.2 10.8 82 4-88 216-319 (397)
71 3ei3_B DNA damage-binding prot 99.6 7.9E-14 2.7E-18 79.1 10.8 80 5-88 194-279 (383)
72 4e54_B DNA damage-binding prot 99.6 6.9E-15 2.4E-19 85.0 6.5 81 5-88 240-324 (435)
73 4a11_B DNA excision repair pro 99.6 6E-14 2E-18 79.5 10.1 81 5-88 33-128 (408)
74 3lrv_A PRE-mRNA-splicing facto 99.6 8.5E-14 2.9E-18 78.3 10.5 80 5-88 159-241 (343)
75 3v7d_B Cell division control p 99.6 1.5E-13 5.1E-18 79.6 11.5 81 4-88 151-233 (464)
76 3v7d_B Cell division control p 99.6 2.9E-13 9.8E-18 78.4 12.7 80 4-88 299-378 (464)
77 2oaj_A Protein SNI1; WD40 repe 99.6 3.9E-14 1.3E-18 88.3 9.5 72 13-88 486-602 (902)
78 3mmy_A MRNA export factor; mRN 99.6 1.5E-13 5E-18 77.0 10.9 77 8-88 79-157 (368)
79 1gxr_A ESG1, transducin-like e 99.6 2.9E-13 9.8E-18 75.1 12.0 79 7-88 133-211 (337)
80 3jro_A Fusion protein of prote 99.6 1.4E-14 4.7E-19 88.7 7.1 78 8-88 2-83 (753)
81 3lrv_A PRE-mRNA-splicing facto 99.6 1.8E-13 6.3E-18 76.9 11.1 73 13-88 123-198 (343)
82 1k8k_C P40, ARP2/3 complex 41 99.5 4.2E-14 1.4E-18 79.5 8.4 75 11-88 4-80 (372)
83 1pgu_A Actin interacting prote 99.5 1.2E-13 4.1E-18 81.8 10.7 77 9-88 482-569 (615)
84 3dwl_C Actin-related protein 2 99.5 4.6E-14 1.6E-18 79.8 8.4 79 7-88 92-174 (377)
85 3zwl_B Eukaryotic translation 99.5 5.1E-13 1.7E-17 74.8 12.6 81 4-88 63-148 (369)
86 2vdu_B TRNA (guanine-N(7)-)-me 99.5 7.4E-14 2.5E-18 81.0 9.1 75 10-88 190-268 (450)
87 2j04_B YDR362CP, TAU91; beta p 99.5 1.5E-13 5.2E-18 81.6 10.5 78 7-88 258-339 (524)
88 3gre_A Serine/threonine-protei 99.5 5.9E-14 2E-18 80.8 8.6 82 4-88 201-289 (437)
89 1r5m_A SIR4-interacting protei 99.5 1.1E-13 3.7E-18 78.8 9.5 82 4-88 319-422 (425)
90 3sfz_A APAF-1, apoptotic pepti 99.5 3.5E-13 1.2E-17 85.4 12.6 82 4-88 646-729 (1249)
91 2oaj_A Protein SNI1; WD40 repe 99.5 8.9E-14 3E-18 86.7 9.7 79 6-88 566-658 (902)
92 3k26_A Polycomb protein EED; W 99.5 2.2E-13 7.4E-18 76.3 10.4 72 14-88 68-144 (366)
93 2j04_B YDR362CP, TAU91; beta p 99.5 1.5E-14 5E-19 85.9 5.9 78 8-88 346-425 (524)
94 1r5m_A SIR4-interacting protei 99.5 5.6E-13 1.9E-17 75.8 12.0 81 4-88 278-358 (425)
95 3i2n_A WD repeat-containing pr 99.5 2.2E-13 7.6E-18 76.1 10.0 76 10-88 254-350 (357)
96 1k8k_C P40, ARP2/3 complex 41 99.5 1.8E-13 6.2E-18 76.9 9.6 81 4-88 191-271 (372)
97 1yfq_A Cell cycle arrest prote 99.5 1.7E-13 5.7E-18 76.4 9.3 77 9-88 5-85 (342)
98 3jro_A Fusion protein of prote 99.5 2.5E-13 8.6E-18 83.2 10.7 81 5-88 43-129 (753)
99 4aez_A CDC20, WD repeat-contai 99.5 7.5E-13 2.6E-17 75.8 11.5 82 4-88 206-290 (401)
100 2j04_A TAU60, YPL007P, hypothe 99.5 4.2E-13 1.4E-17 80.4 10.5 67 17-88 131-208 (588)
101 3vl1_A 26S proteasome regulato 99.5 1E-13 3.5E-18 79.2 7.7 82 4-88 170-275 (420)
102 4aez_A CDC20, WD repeat-contai 99.5 1.5E-12 5.3E-17 74.5 12.5 80 4-88 165-245 (401)
103 2w18_A PALB2, fancn, partner a 99.5 1.6E-13 5.6E-18 78.0 8.0 85 4-88 167-266 (356)
104 4a11_B DNA excision repair pro 99.5 1.3E-12 4.4E-17 74.1 11.4 82 4-88 175-273 (408)
105 2xyi_A Probable histone-bindin 99.5 8.5E-13 2.9E-17 76.3 10.7 81 5-88 311-407 (430)
106 1gxr_A ESG1, transducin-like e 99.5 2E-12 6.9E-17 71.7 11.6 77 8-88 258-334 (337)
107 2xyi_A Probable histone-bindin 99.5 1.2E-12 4.1E-17 75.7 10.7 79 8-88 224-306 (430)
108 3dw8_B Serine/threonine-protei 99.5 3.9E-13 1.3E-17 77.3 8.4 72 14-88 27-123 (447)
109 4gga_A P55CDC, cell division c 99.5 3.1E-12 1.1E-16 73.7 11.7 80 4-88 134-215 (420)
110 3dw8_B Serine/threonine-protei 99.5 1.1E-12 3.8E-17 75.4 9.8 75 10-88 221-312 (447)
111 3i2n_A WD repeat-containing pr 99.5 1.2E-12 4.3E-17 73.1 9.7 80 6-88 9-96 (357)
112 2j04_A TAU60, YPL007P, hypothe 99.5 8.4E-13 2.9E-17 79.2 9.3 70 13-88 83-157 (588)
113 2pm9_A Protein WEB1, protein t 99.5 8.6E-13 2.9E-17 75.2 9.1 73 13-88 65-142 (416)
114 1yfq_A Cell cycle arrest prote 99.4 3.7E-12 1.3E-16 71.0 10.8 76 8-88 49-128 (342)
115 4ggc_A P55CDC, cell division c 99.4 7.5E-12 2.6E-16 69.1 11.9 82 4-88 54-178 (318)
116 1p22_A F-BOX/WD-repeat protein 99.4 6.4E-12 2.2E-16 72.6 12.1 78 4-88 285-362 (435)
117 1p22_A F-BOX/WD-repeat protein 99.4 9.3E-12 3.2E-16 71.9 11.5 78 4-88 162-239 (435)
118 4h5i_A Guanine nucleotide-exch 99.4 2.7E-12 9.2E-17 73.1 9.0 76 10-88 214-297 (365)
119 2ovr_B FBW7, F-BOX/WD repeat p 99.4 1.9E-11 6.5E-16 70.7 11.9 78 4-88 148-225 (445)
120 2vdu_B TRNA (guanine-N(7)-)-me 99.4 2.8E-12 9.6E-17 74.4 7.9 82 4-88 136-226 (450)
121 2ovr_B FBW7, F-BOX/WD repeat p 99.4 3.9E-11 1.4E-15 69.4 11.9 78 4-88 188-265 (445)
122 4gq1_A NUP37; propeller, trans 99.3 2.2E-11 7.4E-16 69.9 8.2 82 4-88 175-283 (393)
123 2oit_A Nucleoporin 214KDA; NH2 99.3 3.8E-12 1.3E-16 74.1 4.7 72 14-88 91-178 (434)
124 3bws_A Protein LP49; two-domai 99.2 1.5E-10 5.3E-15 66.4 8.9 76 10-88 164-240 (433)
125 2hqs_A Protein TOLB; TOLB, PAL 99.2 4.4E-10 1.5E-14 65.0 10.0 80 5-88 168-253 (415)
126 3vu4_A KMHSV2; beta-propeller 99.2 8.4E-10 2.9E-14 62.6 10.4 82 4-88 227-333 (355)
127 1l0q_A Surface layer protein; 99.1 1.9E-09 6.5E-14 61.2 11.1 80 4-88 21-102 (391)
128 3bws_A Protein LP49; two-domai 99.0 1.1E-08 3.7E-13 58.8 11.5 81 4-88 200-289 (433)
129 1l0q_A Surface layer protein; 99.0 2.5E-08 8.5E-13 56.6 11.8 80 4-88 63-144 (391)
130 1k32_A Tricorn protease; prote 99.0 8.1E-09 2.8E-13 65.4 10.0 78 8-88 371-458 (1045)
131 1nir_A Nitrite reductase; hemo 99.0 3.2E-08 1.1E-12 59.2 11.7 80 4-88 168-254 (543)
132 2hqs_A Protein TOLB; TOLB, PAL 98.9 1.3E-07 4.6E-12 54.7 11.8 76 9-88 216-297 (415)
133 3o4h_A Acylamino-acid-releasin 98.9 4.4E-09 1.5E-13 62.8 5.5 78 7-88 186-273 (582)
134 2ojh_A Uncharacterized protein 98.8 5.1E-08 1.7E-12 52.9 8.6 72 7-81 164-237 (297)
135 2ojh_A Uncharacterized protein 98.8 4.4E-08 1.5E-12 53.2 7.3 76 8-87 34-113 (297)
136 3pe7_A Oligogalacturonate lyas 98.7 5.8E-08 2E-12 55.1 6.9 83 3-88 18-108 (388)
137 1nir_A Nitrite reductase; hemo 98.7 1E-07 3.4E-12 57.2 7.8 81 5-88 410-511 (543)
138 3o4h_A Acylamino-acid-releasin 98.7 1.3E-07 4.6E-12 56.5 8.3 66 19-88 153-224 (582)
139 1pby_B Quinohemoprotein amine 98.7 5E-07 1.7E-11 50.1 9.2 69 14-88 239-307 (337)
140 3u4y_A Uncharacterized protein 98.7 6.1E-07 2.1E-11 49.9 9.4 81 4-88 29-114 (331)
141 1k32_A Tricorn protease; prote 98.6 3.3E-07 1.1E-11 58.3 9.0 80 4-87 409-498 (1045)
142 2ecf_A Dipeptidyl peptidase IV 98.6 1.8E-07 6.2E-12 57.1 7.5 70 15-88 36-135 (741)
143 3vgz_A Uncharacterized protein 98.6 9.2E-07 3.2E-11 49.4 9.9 68 18-88 143-212 (353)
144 3vgz_A Uncharacterized protein 98.6 1E-06 3.5E-11 49.2 10.0 81 5-88 174-259 (353)
145 1xfd_A DIP, dipeptidyl aminope 98.6 1.3E-07 4.5E-12 57.5 5.8 80 4-88 46-140 (723)
146 2ecf_A Dipeptidyl peptidase IV 98.6 3.5E-07 1.2E-11 55.9 7.5 66 18-88 111-178 (741)
147 1ri6_A Putative isomerase YBHE 98.5 1.4E-06 4.6E-11 48.4 8.5 71 14-88 36-112 (343)
148 3e5z_A Putative gluconolactona 98.5 7.1E-06 2.4E-10 45.2 11.2 79 5-88 17-96 (296)
149 2dg1_A DRP35, lactonase; beta 98.5 1E-05 3.5E-10 45.1 11.8 79 7-88 36-118 (333)
150 1jmx_B Amine dehydrogenase; ox 98.5 2.3E-06 7.9E-11 47.7 9.2 67 16-88 255-322 (349)
151 3hfq_A Uncharacterized protein 98.5 3.1E-06 1E-10 47.5 8.9 74 12-88 82-168 (347)
152 3hfq_A Uncharacterized protein 98.4 4.3E-06 1.5E-10 46.9 8.8 68 17-87 241-313 (347)
153 2z3z_A Dipeptidyl aminopeptida 98.4 4.7E-07 1.6E-11 55.1 5.2 67 9-79 114-199 (706)
154 3scy_A Hypothetical bacterial 98.4 8.8E-06 3E-10 45.9 10.0 71 15-88 210-288 (361)
155 3u4y_A Uncharacterized protein 98.4 6.2E-06 2.1E-10 45.8 9.3 77 8-88 76-157 (331)
156 1z68_A Fibroblast activation p 98.4 2.9E-07 1E-11 56.2 4.1 64 18-88 62-136 (719)
157 1ri6_A Putative isomerase YBHE 98.4 3.5E-06 1.2E-10 46.8 8.0 67 17-87 232-304 (343)
158 2z3z_A Dipeptidyl aminopeptida 98.4 3.5E-06 1.2E-10 51.4 8.2 68 18-88 183-290 (706)
159 3scy_A Hypothetical bacterial 98.3 1.1E-05 3.7E-10 45.6 9.2 68 16-87 259-333 (361)
160 1jmx_B Amine dehydrogenase; ox 98.3 5.5E-06 1.9E-10 46.2 7.8 82 4-88 30-131 (349)
161 1xfd_A DIP, dipeptidyl aminope 98.3 6.7E-06 2.3E-10 50.2 8.5 67 19-88 176-286 (723)
162 3azo_A Aminopeptidase; POP fam 98.3 3.4E-06 1.2E-10 51.1 6.9 71 7-81 116-208 (662)
163 3azo_A Aminopeptidase; POP fam 98.3 7E-06 2.4E-10 49.7 8.1 77 8-87 179-270 (662)
164 4a5s_A Dipeptidyl peptidase 4 98.3 5.3E-06 1.8E-10 51.2 7.7 80 4-88 45-138 (740)
165 1q7f_A NHL, brain tumor CG1071 98.3 4.1E-05 1.4E-09 41.9 10.5 78 6-88 195-277 (286)
166 1pby_B Quinohemoprotein amine 98.3 6.6E-06 2.2E-10 45.6 7.2 81 5-88 21-121 (337)
167 1jof_A Carboxy-CIS,CIS-muconat 98.3 6.2E-05 2.1E-09 42.8 11.1 71 14-87 143-220 (365)
168 3fvz_A Peptidyl-glycine alpha- 98.2 7E-05 2.4E-09 42.1 11.1 71 15-88 23-118 (329)
169 2oiz_A Aromatic amine dehydrog 98.2 1.2E-05 4.1E-10 45.9 7.8 62 21-88 259-331 (361)
170 1z68_A Fibroblast activation p 98.2 2E-06 6.7E-11 52.6 4.3 65 20-88 20-96 (719)
171 1xip_A Nucleoporin NUP159; bet 98.2 2.2E-05 7.4E-10 45.7 8.3 67 11-88 122-188 (388)
172 1q7f_A NHL, brain tumor CG1071 98.2 0.00014 4.7E-09 39.8 12.0 71 14-88 162-235 (286)
173 3fvz_A Peptidyl-glycine alpha- 98.1 3.1E-05 1.1E-09 43.5 8.2 80 5-88 228-319 (329)
174 3c5m_A Oligogalacturonate lyas 98.1 4.6E-06 1.6E-10 47.2 4.6 82 3-88 18-108 (396)
175 2xdw_A Prolyl endopeptidase; a 98.1 1.3E-05 4.6E-10 49.2 6.6 66 14-83 123-193 (710)
176 2oiz_A Aromatic amine dehydrog 98.1 8.7E-05 3E-09 42.4 9.4 64 4-73 295-360 (361)
177 1jof_A Carboxy-CIS,CIS-muconat 98.0 1.2E-05 4.2E-10 45.6 5.1 69 17-88 255-338 (365)
178 2bkl_A Prolyl endopeptidase; m 98.0 7.8E-06 2.7E-10 50.1 4.1 65 14-83 119-190 (695)
179 1pjx_A Dfpase, DIISOPROPYLFLUO 97.9 0.00052 1.8E-08 37.8 10.3 69 16-87 226-295 (314)
180 1qks_A Cytochrome CD1 nitrite 97.9 0.0011 3.8E-08 40.4 12.1 79 5-88 187-272 (567)
181 1rwi_B Serine/threonine-protei 97.9 0.00059 2E-08 36.8 11.0 70 16-88 192-261 (270)
182 2gop_A Trilobed protease; beta 97.9 0.00014 4.7E-09 40.7 7.6 59 16-79 59-122 (347)
183 4a5s_A Dipeptidyl peptidase 4 97.9 1.7E-05 6E-10 49.0 4.2 61 16-81 17-82 (740)
184 3pe7_A Oligogalacturonate lyas 97.8 0.00049 1.7E-08 39.0 8.8 64 11-77 76-141 (388)
185 3no2_A Uncharacterized protein 97.7 0.00024 8.2E-09 39.3 7.0 59 28-88 3-62 (276)
186 2xdw_A Prolyl endopeptidase; a 97.7 0.00027 9.3E-09 43.5 7.7 68 18-88 173-265 (710)
187 2bkl_A Prolyl endopeptidase; m 97.7 0.00045 1.5E-08 42.5 8.3 61 19-82 171-248 (695)
188 3e5z_A Putative gluconolactona 97.7 0.0015 5.2E-08 35.9 9.7 72 12-88 168-243 (296)
189 2mad_H Methylamine dehydrogena 97.6 0.0022 7.5E-08 37.0 10.5 79 5-88 57-154 (373)
190 3no2_A Uncharacterized protein 97.6 0.0023 7.9E-08 35.4 10.4 78 4-87 24-104 (276)
191 3c5m_A Oligogalacturonate lyas 97.6 0.001 3.4E-08 37.7 8.2 72 13-88 185-270 (396)
192 1rwi_B Serine/threonine-protei 97.6 0.0022 7.5E-08 34.6 9.4 69 17-88 151-219 (270)
193 3dr2_A Exported gluconolactona 97.5 0.0037 1.3E-07 34.7 11.0 77 7-88 36-113 (305)
194 1qks_A Cytochrome CD1 nitrite 97.4 0.0014 4.9E-08 39.9 8.0 58 30-88 167-224 (567)
195 1mda_H Methylamine dehydrogena 97.4 0.00094 3.2E-08 38.7 6.6 80 4-88 55-155 (368)
196 3sjl_D Methylamine dehydrogena 97.3 0.0012 4E-08 38.6 6.2 79 5-88 69-166 (386)
197 1xip_A Nucleoporin NUP159; bet 97.3 0.0055 1.9E-07 35.8 8.8 66 14-88 87-152 (388)
198 2z2n_A Virginiamycin B lyase; 97.3 0.0062 2.1E-07 33.1 11.1 75 10-88 9-84 (299)
199 2dg1_A DRP35, lactonase; beta 97.2 0.008 2.8E-07 33.4 11.9 64 13-79 84-153 (333)
200 1yr2_A Prolyl oligopeptidase; 97.2 0.00078 2.7E-08 41.8 4.9 62 16-82 163-229 (741)
201 2hz6_A Endoplasmic reticulum t 97.1 0.0012 4.2E-08 37.9 5.2 58 29-88 8-65 (369)
202 2mad_H Methylamine dehydrogena 97.1 0.014 4.7E-07 33.7 9.1 64 21-88 272-347 (373)
203 3dsm_A Uncharacterized protein 97.0 0.013 4.6E-07 32.9 8.4 66 18-88 46-111 (328)
204 3g4e_A Regucalcin; six bladed 96.9 0.016 5.5E-07 32.0 8.6 61 16-79 199-261 (297)
205 2gop_A Trilobed protease; beta 96.9 0.017 5.8E-07 32.2 8.7 63 12-83 259-322 (347)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 96.9 0.017 5.8E-07 31.7 8.8 72 12-87 14-97 (314)
207 3dsm_A Uncharacterized protein 96.8 0.026 8.7E-07 31.8 9.7 67 17-88 226-299 (328)
208 1yr2_A Prolyl oligopeptidase; 96.8 0.019 6.5E-07 35.8 8.4 66 19-88 212-300 (741)
209 3c75_H MADH, methylamine dehyd 96.7 0.0048 1.7E-07 36.5 5.5 80 4-88 108-206 (426)
210 3iuj_A Prolyl endopeptidase; h 96.7 0.0036 1.2E-07 38.8 4.8 62 14-81 127-194 (693)
211 2z2n_A Virginiamycin B lyase; 96.6 0.031 1E-06 30.3 11.2 70 15-88 56-126 (299)
212 3hrp_A Uncharacterized protein 96.5 0.045 1.5E-06 32.0 8.5 67 16-87 131-199 (409)
213 1mda_H Methylamine dehydrogena 96.4 0.034 1.2E-06 32.3 7.6 64 21-88 269-343 (368)
214 3sjl_D Methylamine dehydrogena 96.4 0.02 6.7E-07 33.5 6.6 59 28-88 42-115 (386)
215 3c75_H MADH, methylamine dehyd 96.4 0.022 7.7E-07 33.7 6.6 64 21-88 324-399 (426)
216 2qc5_A Streptogramin B lactona 96.2 0.06 2E-06 29.2 11.0 71 14-88 18-89 (300)
217 3g4e_A Regucalcin; six bladed 95.9 0.087 3E-06 29.1 10.7 71 11-87 8-78 (297)
218 3hrp_A Uncharacterized protein 95.9 0.12 4E-06 30.2 8.9 67 17-87 324-406 (409)
219 2qc5_A Streptogramin B lactona 95.8 0.094 3.2E-06 28.4 11.0 70 15-88 187-257 (300)
220 2qe8_A Uncharacterized protein 95.5 0.15 5.3E-06 28.8 7.9 72 14-88 65-151 (343)
221 2qe8_A Uncharacterized protein 95.3 0.1 3.6E-06 29.4 6.3 59 19-80 251-310 (343)
222 2ghs_A AGR_C_1268P; regucalcin 94.8 0.25 8.7E-06 27.7 10.1 69 17-88 180-257 (326)
223 1fwx_A Nitrous oxide reductase 94.6 0.17 5.8E-06 31.5 6.1 66 19-88 280-358 (595)
224 3dr2_A Exported gluconolactona 94.5 0.26 8.8E-06 27.3 6.4 65 18-87 133-220 (305)
225 2ghs_A AGR_C_1268P; regucalcin 94.3 0.35 1.2E-05 27.1 10.9 57 16-76 230-287 (326)
226 2hz6_A Endoplasmic reticulum t 93.3 0.013 4.5E-07 33.6 -0.2 55 30-88 92-146 (369)
227 3pbp_A Nucleoporin NUP82; beta 93.3 0.77 2.6E-05 27.7 9.5 71 15-85 124-206 (452)
228 1yiq_A Quinohemoprotein alcoho 92.7 0.53 1.8E-05 29.6 6.1 50 28-77 484-534 (689)
229 3tc9_A Hypothetical hydrolase; 92.1 1.1 3.7E-05 26.5 8.8 66 19-87 229-297 (430)
230 3pbp_A Nucleoporin NUP82; beta 91.6 0.95 3.2E-05 27.3 5.9 68 17-88 67-155 (452)
231 2ece_A 462AA long hypothetical 91.2 1.6 5.4E-05 26.5 8.6 57 20-79 192-271 (462)
232 3nok_A Glutaminyl cyclase; bet 91.2 1.2 4E-05 25.0 7.9 56 30-88 106-161 (268)
233 1npe_A Nidogen, entactin; glyc 91.2 1 3.5E-05 24.3 8.9 67 18-87 38-106 (267)
234 3qqz_A Putative uncharacterize 91.0 1.2 4E-05 24.7 10.6 73 10-86 21-95 (255)
235 3qqz_A Putative uncharacterize 90.8 1.2 4.3E-05 24.6 9.4 68 16-87 173-249 (255)
236 3iuj_A Prolyl endopeptidase; h 89.2 2.8 9.5E-05 26.3 7.2 61 10-76 322-386 (693)
237 2iwa_A Glutamine cyclotransfer 88.9 1.9 6.5E-05 24.0 8.3 56 31-88 77-132 (266)
238 1kb0_A Quinohemoprotein alcoho 88.7 0.95 3.2E-05 28.4 4.6 48 40-88 457-504 (677)
239 3nok_A Glutaminyl cyclase; bet 88.7 2.1 7E-05 24.1 7.1 64 18-88 57-122 (268)
240 3v65_B Low-density lipoprotein 88.6 2.3 8E-05 24.6 9.4 69 16-86 116-185 (386)
241 2iwa_A Glutamine cyclotransfer 88.3 2.2 7.4E-05 23.8 6.6 59 28-87 114-177 (266)
242 2xe4_A Oligopeptidase B; hydro 88.1 2.7 9.1E-05 26.7 6.3 55 20-77 225-287 (751)
243 2ece_A 462AA long hypothetical 88.0 2.9 9.8E-05 25.4 6.1 51 28-79 147-206 (462)
244 3v64_C Agrin; beta propeller, 87.6 2.6 9E-05 24.1 9.5 69 16-86 73-142 (349)
245 1yiq_A Quinohemoprotein alcoho 87.5 1.6 5.4E-05 27.5 5.0 48 40-88 455-502 (689)
246 3kya_A Putative phosphatase; s 87.3 3.5 0.00012 25.2 6.7 66 20-87 251-337 (496)
247 3nol_A Glutamine cyclotransfer 86.9 2.7 9.2E-05 23.5 8.7 55 31-88 98-152 (262)
248 1kb0_A Quinohemoprotein alcoho 85.9 3 0.0001 26.2 5.6 50 28-77 486-536 (677)
249 3hxj_A Pyrrolo-quinoline quino 85.0 3.3 0.00011 22.7 6.4 47 29-77 147-193 (330)
250 4hw6_A Hypothetical protein, I 84.9 4.4 0.00015 24.0 7.2 63 21-86 233-299 (433)
251 4gq2_M Nucleoporin NUP120; bet 84.8 5 0.00017 26.5 6.4 37 17-56 237-273 (950)
252 3q7m_A Lipoprotein YFGL, BAMB; 83.8 3.2 0.00011 23.5 4.9 57 30-88 318-375 (376)
253 2p9w_A MAL S 1 allergenic prot 83.3 4.9 0.00017 23.4 7.2 66 18-87 139-211 (334)
254 1tl2_A L10, protein (tachylect 83.1 3.3 0.00011 22.9 4.4 64 17-87 42-112 (236)
255 2p4o_A Hypothetical protein; p 83.0 4.3 0.00015 22.5 10.8 58 16-78 32-89 (306)
256 2xe4_A Oligopeptidase B; hydro 81.9 3.6 0.00012 26.2 4.8 60 17-81 175-241 (751)
257 3p5b_L Low density lipoprotein 80.9 6.3 0.00022 23.0 10.6 71 15-87 111-186 (400)
258 3hxj_A Pyrrolo-quinoline quino 80.8 5.2 0.00018 21.9 6.3 45 28-76 186-230 (330)
259 1k3i_A Galactose oxidase precu 80.7 8.1 0.00028 24.1 6.8 60 29-88 197-271 (656)
260 3mbr_X Glutamine cyclotransfer 80.0 5.7 0.0002 21.9 9.3 56 30-88 75-130 (243)
261 1fwx_A Nitrous oxide reductase 77.8 2.1 7.2E-05 26.8 2.8 60 17-79 332-406 (595)
262 1flg_A Protein (quinoprotein e 77.5 7.8 0.00027 24.0 5.2 49 29-77 496-545 (582)
263 2xzh_A Clathrin heavy chain 1; 77.3 8.9 0.0003 22.7 9.5 62 19-83 263-324 (365)
264 4fhn_B Nucleoporin NUP120; pro 74.4 5.2 0.00018 26.9 4.1 35 19-56 241-275 (1139)
265 4gq2_M Nucleoporin NUP120; bet 73.8 4.5 0.00015 26.7 3.7 28 61-88 236-263 (950)
266 1ijq_A LDL receptor, low-densi 73.2 10 0.00034 21.3 8.5 68 16-86 30-103 (316)
267 3q7m_A Lipoprotein YFGL, BAMB; 72.4 11 0.00037 21.3 7.0 28 30-57 53-80 (376)
268 1kv9_A Type II quinohemoprotei 71.5 15 0.00053 23.1 5.5 32 28-59 467-498 (668)
269 1w6s_A Methanol dehydrogenase 71.5 14 0.00046 23.2 5.2 48 29-76 483-531 (599)
270 2fp8_A Strictosidine synthase; 70.7 11 0.00039 20.8 7.6 66 18-87 128-212 (322)
271 3nol_A Glutamine cyclotransfer 70.3 12 0.00041 21.0 9.7 65 18-88 45-113 (262)
272 3amr_A 3-phytase; beta-propell 70.3 14 0.00048 21.7 5.9 56 29-87 39-104 (355)
273 1n7d_A LDL receptor, low-densi 70.2 5.7 0.0002 25.2 3.5 30 17-49 407-437 (699)
274 3tc9_A Hypothetical hydrolase; 69.3 15 0.00052 21.7 7.8 69 14-87 177-253 (430)
275 1bpo_A Protein (clathrin); cla 68.2 19 0.00063 22.3 10.4 63 19-84 262-324 (494)
276 1npe_A Nidogen, entactin; glyc 67.5 12 0.00042 20.0 11.1 60 16-78 79-140 (267)
277 1n7d_A LDL receptor, low-densi 66.0 22 0.00077 22.6 5.4 26 62-87 541-567 (699)
278 3f7f_A Nucleoporin NUP120; nuc 65.4 22 0.00076 23.2 5.3 28 29-56 230-257 (729)
279 2ad6_A Methanol dehydrogenase 65.3 22 0.00074 22.0 5.2 49 29-77 474-523 (571)
280 2p4o_A Hypothetical protein; p 64.8 16 0.00053 20.2 7.8 52 21-76 217-273 (306)
281 2ad6_A Methanol dehydrogenase 64.5 15 0.0005 22.7 4.4 49 39-88 443-491 (571)
282 1k3i_A Galactose oxidase precu 62.8 25 0.00086 22.0 5.4 52 28-79 252-305 (656)
283 2fp8_A Strictosidine synthase; 60.5 19 0.00067 19.9 7.7 55 20-78 189-246 (322)
284 3v64_C Agrin; beta propeller, 58.4 23 0.0008 20.2 10.6 69 16-87 159-230 (349)
285 4fhn_B Nucleoporin NUP120; pro 55.5 5.2 0.00018 26.9 1.5 25 64-88 241-265 (1139)
286 3v65_B Low-density lipoprotein 51.9 33 0.0011 19.9 11.2 70 16-87 202-273 (386)
287 2p9w_A MAL S 1 allergenic prot 50.5 36 0.0012 19.9 8.6 64 12-77 9-82 (334)
288 3mbr_X Glutamine cyclotransfer 49.8 31 0.0011 19.0 10.2 67 17-88 22-91 (243)
289 1cru_A Protein (soluble quinop 47.7 44 0.0015 20.1 10.1 67 8-77 19-97 (454)
290 1xi4_A Clathrin heavy chain; a 44.6 90 0.0031 22.8 6.7 28 28-55 268-295 (1630)
291 1kv9_A Type II quinohemoprotei 42.9 62 0.0021 20.5 7.7 65 21-88 235-330 (668)
292 2ism_A Putative oxidoreductase 41.7 49 0.0017 18.9 9.7 52 14-71 29-85 (352)
293 4a0p_A LRP6, LRP-6, low-densit 37.1 79 0.0027 20.0 8.3 69 16-86 37-106 (628)
294 3sov_A LRP-6, low-density lipo 35.4 62 0.0021 18.3 10.1 67 16-86 122-192 (318)
295 3s94_A LRP-6, low-density lipo 34.2 89 0.003 19.7 8.3 69 16-86 349-418 (619)
296 3das_A Putative oxidoreductase 29.9 86 0.0029 18.3 11.1 61 8-71 24-90 (347)
297 3sre_A PON1, serum paraoxonase 29.8 87 0.003 18.3 9.3 27 61-87 221-248 (355)
298 3a9g_A Putative uncharacterize 29.5 85 0.0029 18.0 8.7 63 10-77 23-93 (354)
299 3zwu_A Alkaline phosphatase PH 27.2 1.2E+02 0.0043 19.3 8.9 56 19-77 479-547 (592)
300 3m0c_C LDL receptor, low-densi 27.0 1.4E+02 0.0048 19.7 11.6 69 16-86 514-584 (791)
301 2g8s_A Glucose/sorbosone dehyd 25.9 1E+02 0.0034 17.7 6.6 56 29-84 288-347 (353)
302 3p5b_L Low density lipoprotein 21.8 1.3E+02 0.0045 17.6 11.4 69 16-86 202-272 (400)
303 1ijq_A LDL receptor, low-densi 21.2 1.2E+02 0.0041 16.9 11.6 68 16-87 120-191 (316)
No 1
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.83 E-value=3e-19 Score=101.52 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=72.3
Q ss_pred eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEe-cCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444 8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTF-EGHKGCVWGVDINKDASKAASGAADFQAKA 86 (88)
Q Consensus 8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~ 86 (88)
...+.+|...|.+++|+ ++|+++++++.|+.|++||+.+++.+..+ .+|...|.+++|+|++.++++++.|++|+|
T Consensus 262 ~~~~~~~~~~V~~~~~S---pdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrv 338 (365)
T 4h5i_A 262 SKQVTNRFKGITSMDVD---MKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHI 338 (365)
T ss_dssp EEEEESSCSCEEEEEEC---TTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred eeeecCCCCCeEeEEEC---CCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 45677899999999999 89999999999999999999999888875 689999999999999999999999999999
Q ss_pred cC
Q psy6444 87 LK 88 (88)
Q Consensus 87 ~~ 88 (88)
||
T Consensus 339 w~ 340 (365)
T 4h5i_A 339 IK 340 (365)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.79 E-value=2.7e-18 Score=101.34 Aligned_cols=78 Identities=29% Similarity=0.409 Sum_probs=72.9
Q ss_pred eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444 7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA 86 (88)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~ 86 (88)
....|++|++.|.+++|+ ++|+++++++.|+.+++|+. +++.+..+.+|...|.+++|+|++.++++++.|+++++
T Consensus 8 e~~~L~GH~~~V~~~a~s---pdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~v 83 (577)
T 2ymu_A 8 ERNRLEAHSSSVRGVAFS---PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 83 (577)
T ss_dssp EEEEECCCSSCEEEEEEC---TTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EeeEECCCCCcEEEEEEC---CCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 446799999999999999 89999999999999999995 67888999999999999999999999999999999999
Q ss_pred cC
Q psy6444 87 LK 88 (88)
Q Consensus 87 ~~ 88 (88)
||
T Consensus 84 Wd 85 (577)
T 2ymu_A 84 WN 85 (577)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 3
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.78 E-value=1.4e-17 Score=94.31 Aligned_cols=78 Identities=17% Similarity=0.296 Sum_probs=73.9
Q ss_pred eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCC-EEEEECCCCCEEEEec-C-CCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444 8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGK-PMLRQGDTGDWIGTFE-G-HKGCVWGVDINKDASKAASGAADFQA 84 (88)
Q Consensus 8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~~~~~~~d~~i 84 (88)
+..+.+|.+.|.+++|+ +++..+++++.|+. +++||+.++..+..+. + |...|.+++|+|++.++++++.|+++
T Consensus 188 ~~~~~~h~~~v~~~~~s---~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v 264 (355)
T 3vu4_A 188 GVLIKAHTNPIKMVRLN---RKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTL 264 (355)
T ss_dssp CEEECCCSSCEEEEEEC---TTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEE
T ss_pred cEEEEccCCceEEEEEC---CCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEE
Confidence 67889999999999999 79999999999998 9999999999998888 5 89999999999999999999999999
Q ss_pred EEcC
Q psy6444 85 KALK 88 (88)
Q Consensus 85 ~~~~ 88 (88)
++||
T Consensus 265 ~iw~ 268 (355)
T 3vu4_A 265 HVFE 268 (355)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
No 4
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.77 E-value=1.2e-17 Score=92.94 Aligned_cols=81 Identities=22% Similarity=0.200 Sum_probs=70.6
Q ss_pred ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-----EEEEecCCCCeEEEEEECCCCCeEEEecC
Q psy6444 6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-----WIGTFEGHKGCVWGVDINKDASKAASGAA 80 (88)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 80 (88)
....+|+||++.|.+++|+| .+++++++++.|+.|++|++.... ....+.+|...|.+++|+|++.++++++.
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp--~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTP--QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEEEECCCSSCEEEEEECT--TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEECCccCCEEEEEEeC--CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 34568999999999999994 346899999999999999986543 45677899999999999999999999999
Q ss_pred CCeEEEcC
Q psy6444 81 DFQAKALK 88 (88)
Q Consensus 81 d~~i~~~~ 88 (88)
|+.+++|+
T Consensus 107 d~~i~~~~ 114 (340)
T 4aow_A 107 DGTLRLWD 114 (340)
T ss_dssp TSEEEEEE
T ss_pred cccceEEe
Confidence 99999885
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.77 E-value=2.3e-17 Score=92.47 Aligned_cols=82 Identities=27% Similarity=0.341 Sum_probs=76.8
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
.+..+..+.+|...|.+++|+ +++..+++++.|+.+++|++.++..+..+.+|...|..++|+|++..+++++.|+.
T Consensus 237 ~~~~~~~~~~h~~~v~~~~~s---p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~ 313 (321)
T 3ow8_A 237 HANLAGTLSGHASWVLNVAFC---PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQE 313 (321)
T ss_dssp TCCEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCC
T ss_pred CcceeEEEcCCCCceEEEEEC---CCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence 445677889999999999999 79999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 314 i~vwd 318 (321)
T 3ow8_A 314 IHIYD 318 (321)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99997
No 6
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.77 E-value=1.6e-17 Score=92.80 Aligned_cols=80 Identities=31% Similarity=0.341 Sum_probs=75.8
Q ss_pred ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444 6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK 85 (88)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~ 85 (88)
.++..+.+|...|.+++|+ +++..+++++.|+.+++||+.++..+..+.+|...|.+++|+|++..+++++.|++++
T Consensus 56 ~~~~~~~~h~~~v~~~~~s---~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~ 132 (319)
T 3frx_A 56 VPVRSFKGHSHIVQDCTLT---ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132 (319)
T ss_dssp EEEEEEECCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred ccceEEeCCcccEEEEEEC---CCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 4577889999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EcC
Q psy6444 86 ALK 88 (88)
Q Consensus 86 ~~~ 88 (88)
+||
T Consensus 133 vwd 135 (319)
T 3frx_A 133 VWT 135 (319)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.76 E-value=2.3e-17 Score=92.43 Aligned_cols=82 Identities=26% Similarity=0.379 Sum_probs=77.2
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
.++.+..+.+|..+|.+++|+ ++++.+++++.|+.+++|++..+..+..+.+|...|..++|+|++.++++++.|++
T Consensus 195 ~~~~~~~~~~h~~~v~~l~~s---pd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~ 271 (321)
T 3ow8_A 195 TGKLLHTLEGHAMPIRSLTFS---PDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS 271 (321)
T ss_dssp TTEEEEEECCCSSCCCEEEEC---TTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCcEEEEEcccCCceeEEEEc---CCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence 466788899999999999999 79999999999999999999988888999999999999999999999999999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 272 v~iwd 276 (321)
T 3ow8_A 272 VKVWD 276 (321)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 8
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.76 E-value=2.3e-17 Score=92.83 Aligned_cols=81 Identities=27% Similarity=0.287 Sum_probs=75.9
Q ss_pred cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444 5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA 84 (88)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i 84 (88)
+.+...+.+|...|.+++|+ +++..+++++.|+.+++|++.++..+..+.+|...|.+++|+|++.++++++.|+.+
T Consensus 66 ~~~~~~l~~h~~~V~~~~~~---~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i 142 (343)
T 2xzm_R 66 GIPHKALTGHNHFVSDLALS---QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREI 142 (343)
T ss_dssp EEEEEEECCCSSCEEEEEEC---SSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCE
T ss_pred ccccchhccCCCceEEEEEC---CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEE
Confidence 34567889999999999999 799999999999999999999999999999999999999999999999999999999
Q ss_pred EEcC
Q psy6444 85 KALK 88 (88)
Q Consensus 85 ~~~~ 88 (88)
++||
T Consensus 143 ~~wd 146 (343)
T 2xzm_R 143 KLWN 146 (343)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9996
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.76 E-value=5.8e-17 Score=91.20 Aligned_cols=82 Identities=22% Similarity=0.294 Sum_probs=77.1
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
.++.+..+.+|.+.|.+++|+ +++..+++++.|+.+++||+.++..+..+.+|...|.+++|+|++.++++++.|+.
T Consensus 173 ~~~~~~~~~~h~~~v~~~~~~---~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~ 249 (340)
T 1got_B 173 TGQQTTTFTGHTGDVMSLSLA---PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249 (340)
T ss_dssp TTEEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCcEEEEEcCCCCceEEEEEC---CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc
Confidence 456778899999999999999 79999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 250 v~iwd 254 (340)
T 1got_B 250 CRLFD 254 (340)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 10
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.75 E-value=5.2e-17 Score=90.23 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=77.0
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
.+..+..+..|..++.+++|+ ++++.+++++.|+.+++|++.++..+..+.+|...|.+++|+|++.++++++.|++
T Consensus 44 ~~~~~~~~~~~~~~v~~~~~~---~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~ 120 (304)
T 2ynn_A 44 TQVEVRSIQVTETPVRAGKFI---ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120 (304)
T ss_dssp TTEEEEEEECCSSCEEEEEEE---GGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred CCceeEEeeccCCcEEEEEEe---CCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCe
Confidence 456778888999999999999 79999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 121 v~lWd 125 (304)
T 2ynn_A 121 VKLWN 125 (304)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 11
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.75 E-value=3.3e-17 Score=96.69 Aligned_cols=81 Identities=32% Similarity=0.459 Sum_probs=75.5
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
+++.+..+.+|...|.+++|+ ++++++++++.|+.+++|+. +++.+..+.+|.+.|.+++|+|+++++++++.|+.
T Consensus 497 ~~~~~~~~~~h~~~v~~l~~s---~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~ 572 (577)
T 2ymu_A 497 NGQLLQTLTGHSSSVRGVAFS---PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKT 572 (577)
T ss_dssp TSCEEEEEECCSSCEEEEEEC---TTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred CCCEEEEEeCCCCCEEEEEEc---CCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE
Confidence 456788899999999999999 89999999999999999996 57888999999999999999999999999999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
|++||
T Consensus 573 i~~Wd 577 (577)
T 2ymu_A 573 VKLWN 577 (577)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99998
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.75 E-value=1.4e-16 Score=88.37 Aligned_cols=82 Identities=26% Similarity=0.300 Sum_probs=76.3
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
......++.+|...|.+++|+ ++++.+++++.|+.+++|+..++.....+.+|...|..++|+|++.++++++.|+.
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s---~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 88 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 88 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CceeEEEEcccCCcEEEEEEC---CCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCE
Confidence 345677889999999999999 79999999999999999999988888899999999999999999999999999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 89 i~vwd 93 (312)
T 4ery_A 89 LKIWD 93 (312)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.74 E-value=5.4e-17 Score=93.37 Aligned_cols=82 Identities=27% Similarity=0.274 Sum_probs=76.9
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
.+....++.+|...|.+++|+ ++++.+++++.|+.+++|++.....+..+.+|...|.+++|+|++.++++++.|++
T Consensus 139 ~~~~~~~l~~h~~~V~~v~~~---~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~ 215 (410)
T 1vyh_C 139 TGDFERTLKGHTDSVQDISFD---HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 215 (410)
T ss_dssp TCCCCEEECCCSSCEEEEEEC---TTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred CCcEEEEEeccCCcEEEEEEc---CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence 456778899999999999999 79999999999999999999988888999999999999999999999999999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 216 i~~wd 220 (410)
T 1vyh_C 216 IKMWE 220 (410)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 14
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.74 E-value=2.6e-17 Score=91.46 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=75.1
Q ss_pred ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444 6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK 85 (88)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~ 85 (88)
+..+++.+|...|.+++|+ ++++.+++++.|+.+++|++.++..+..+..|...+..++|++++.++++++.|++++
T Consensus 4 ~~~~~~~~h~~~V~~~~fs---p~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFH---PTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp CCEEEEEEECSCEEEEEEC---SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred eeEEeecCCCCceEEEEEC---CCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 4567789999999999999 7999999999999999999998888899999999999999999999999999999999
Q ss_pred EcC
Q psy6444 86 ALK 88 (88)
Q Consensus 86 ~~~ 88 (88)
+||
T Consensus 81 vwd 83 (304)
T 2ynn_A 81 VFN 83 (304)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
No 15
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.74 E-value=1.8e-17 Score=94.45 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=76.3
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
+....+++.+|.+.|.+++|+ ++++++++++.|+.+++|+..++..+..+..|...|..++|+|++.++++++.|+.
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~s---p~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~ 131 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWT---PEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSA 131 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEEC---TTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSC
T ss_pred eeEEeecccccccEEEEEEEc---CCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCc
Confidence 345678899999999999999 79999999999999999999989888999999999999999999999999999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 132 v~iw~ 136 (380)
T 3iz6_a 132 CSIFN 136 (380)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 99995
No 16
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.74 E-value=6.2e-17 Score=93.10 Aligned_cols=82 Identities=22% Similarity=0.285 Sum_probs=76.9
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
.+..+..+.+|...|.++.|+ +++..+++++.|+.+++|++.++..+..+.+|...|.+++|+|++.++++++.|++
T Consensus 327 ~~~~~~~~~~h~~~v~~v~~~---~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~ 403 (410)
T 1vyh_C 327 TGMCLMTLVGHDNWVRGVLFH---SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 403 (410)
T ss_dssp TTEEEEEEECCSSCEEEEEEC---SSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred CCceEEEEECCCCcEEEEEEc---CCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 456788889999999999999 79999999999999999999988888999999999999999999999999999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
|++|+
T Consensus 404 i~vW~ 408 (410)
T 1vyh_C 404 VKVWE 408 (410)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99997
No 17
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.73 E-value=1.8e-16 Score=94.90 Aligned_cols=82 Identities=30% Similarity=0.421 Sum_probs=74.9
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEec-------CCCCeEEEEEECCCCCeEE
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFE-------GHKGCVWGVDINKDASKAA 76 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~ 76 (88)
+++.+.++.+|...|.+++|+ ++++.+++++.|+.+++|+..++..+..+. +|.+.|.+++|+|++.+++
T Consensus 179 ~~~~~~~l~~H~~~V~~v~fs---pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~ 255 (611)
T 1nr0_A 179 PFKFKSTFGEHTKFVHSVRYN---PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 255 (611)
T ss_dssp TBEEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred CCeEeeeeccccCceEEEEEC---CCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEE
Confidence 345677889999999999999 799999999999999999998888877774 7999999999999999999
Q ss_pred EecCCCeEEEcC
Q psy6444 77 SGAADFQAKALK 88 (88)
Q Consensus 77 ~~~~d~~i~~~~ 88 (88)
+++.|+++++||
T Consensus 256 s~s~D~~v~lWd 267 (611)
T 1nr0_A 256 SASADKTIKIWN 267 (611)
T ss_dssp EEETTSEEEEEE
T ss_pred EEeCCCeEEEEe
Confidence 999999999996
No 18
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.73 E-value=8.9e-17 Score=91.14 Aligned_cols=81 Identities=22% Similarity=0.181 Sum_probs=71.0
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECC-CCCeEEEecCC
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK-DASKAASGAAD 81 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d 81 (88)
+++.+..+.+|...|.+++|+ +++ +++++++.|+.+++||+.+++.+. ..+|.+.|.+++|+| ++.++++++.|
T Consensus 258 ~~~~~~~~~~~~~~v~~l~~s---p~~~~~lasgs~D~~i~iwd~~~~~~~~-~~~H~~~V~~vafsP~d~~~l~s~s~D 333 (357)
T 4g56_B 258 NPDSAQTSAVHSQNITGLAYS---YHSSPFLASISEDCTVAVLDADFSEVFR-DLSHRDFVTGVAWSPLDHSKFTTVGWD 333 (357)
T ss_dssp CGGGCEEECCCSSCEEEEEEC---SSSSCCEEEEETTSCEEEECTTSCEEEE-ECCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred CCcEeEEEeccceeEEEEEEc---CCCCCEEEEEeCCCEEEEEECCCCcEeE-ECCCCCCEEEEEEeCCCCCEEEEEcCC
Confidence 456778899999999999999 565 689999999999999998776554 457999999999998 78999999999
Q ss_pred CeEEEcC
Q psy6444 82 FQAKALK 88 (88)
Q Consensus 82 ~~i~~~~ 88 (88)
++|++||
T Consensus 334 g~v~iW~ 340 (357)
T 4g56_B 334 HKVLHHH 340 (357)
T ss_dssp SCEEEEE
T ss_pred CeEEEEE
Confidence 9999996
No 19
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.73 E-value=1.9e-16 Score=89.63 Aligned_cols=76 Identities=16% Similarity=0.029 Sum_probs=70.7
Q ss_pred EecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEecCCCeEEEcC
Q psy6444 10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGAADFQAKALK 88 (88)
Q Consensus 10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~i~~~~ 88 (88)
.+.+|.+.|.+++|+ ++++.+++++.|+.+++|++.++..+..+.+|...|.+++|++++. .+++++.|+++++||
T Consensus 122 ~~~~H~~~V~~v~~s---pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd 198 (344)
T 4gqb_B 122 CKYEHDDIVSTVSVL---SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198 (344)
T ss_dssp EEECCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred cccCCCCCEEEEEEC---CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccc
Confidence 456899999999999 8999999999999999999999999999999999999999999875 678999999999996
No 20
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.4e-16 Score=88.44 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=67.8
Q ss_pred ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC----CEEEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444 6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG----DWIGTFEGHKGCVWGVDINKDASKAASGAAD 81 (88)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d 81 (88)
..+..+.+|...|.+++|+ ++++.+++++.|+.+++|++... ..+..+.+|...|..++|+|++.++++++.|
T Consensus 98 ~~~~~~~~h~~~V~~v~~s---p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 174 (330)
T 2hes_X 98 DLLAIIEGHENEVKGVAWS---NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD 174 (330)
T ss_dssp EEEEEEC----CEEEEEEC---TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred eeEEEEcCCCCcEEEEEEC---CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence 4567789999999999999 79999999999999999999432 3567788999999999999999999999999
Q ss_pred CeEEEcC
Q psy6444 82 FQAKALK 88 (88)
Q Consensus 82 ~~i~~~~ 88 (88)
+++++||
T Consensus 175 ~~i~iW~ 181 (330)
T 2hes_X 175 DTVRIWK 181 (330)
T ss_dssp SCEEEEE
T ss_pred CeEEEEE
Confidence 9999995
No 21
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.72 E-value=4.8e-16 Score=87.08 Aligned_cols=80 Identities=26% Similarity=0.590 Sum_probs=75.0
Q ss_pred ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444 6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK 85 (88)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~ 85 (88)
.....+.+|.+.|.+++|+ ++++.+++++.|+.+.+|++.++..+..+.+|...|.+++|+|++.++++++.|+.++
T Consensus 23 ~~~~~l~~h~~~v~~~~~s---~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYN---KEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp EEEEEEECCSSCEEEEEEC---TTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred cccEEEEEeeceEEEEEEc---CCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 3456789999999999999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred EcC
Q psy6444 86 ALK 88 (88)
Q Consensus 86 ~~~ 88 (88)
+||
T Consensus 100 iwd 102 (369)
T 3zwl_B 100 LWD 102 (369)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.72 E-value=3.9e-16 Score=87.84 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=75.2
Q ss_pred ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444 6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK 85 (88)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~ 85 (88)
....++.+|.+.|.+++|+ ++++.+++++.|+.+++|+..++..+..+..|...+..++|+|++.++++++.|+.++
T Consensus 46 ~~~~~l~gH~~~v~~~~~s---~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWG---TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CEEEEECCCSSCEEEEEEC---TTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred hhheeecCCCCceEEEEEC---CCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence 4567899999999999999 8999999999999999999999998899999999999999999999999999999999
Q ss_pred EcC
Q psy6444 86 ALK 88 (88)
Q Consensus 86 ~~~ 88 (88)
+||
T Consensus 123 iw~ 125 (340)
T 1got_B 123 IYN 125 (340)
T ss_dssp EEE
T ss_pred EEE
Confidence 995
No 23
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.72 E-value=1.8e-16 Score=87.87 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=69.8
Q ss_pred eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC--CEEEEecCCCCeEEEEEECCC--CCeEEEecCCCe
Q psy6444 8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG--DWIGTFEGHKGCVWGVDINKD--ASKAASGAADFQ 83 (88)
Q Consensus 8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~d~~ 83 (88)
+..+.+|...|.+++|+ ++|+.+++++.|+.+++|++... ..+..+.+|.+.|.+++|+++ +.++++++.|++
T Consensus 2 ~~~~~~h~~~V~~~~~s---~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~ 78 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMD---YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (297)
T ss_dssp CEECCSCSSCEEEEEEC---TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred ceeccCCcCceEEEEEC---CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence 45678999999999999 89999999999999999998643 567888999999999999874 789999999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 79 v~iWd 83 (297)
T 2pm7_B 79 VMIWK 83 (297)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 24
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.71 E-value=6.3e-16 Score=87.55 Aligned_cols=84 Identities=25% Similarity=0.313 Sum_probs=76.1
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
.++.+..+.+|...|.+++++|. +++..+++++.|+.+++||+.++..+..+.+|...|.+++|+|++..+++++.|++
T Consensus 185 ~~~~~~~~~~h~~~v~~~~~~~~-~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~ 263 (354)
T 2pbi_B 185 SGQLLQSFHGHGADVLCLDLAPS-ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT 263 (354)
T ss_dssp TCCEEEEEECCSSCEEEEEECCC-SSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCeEEEEEcCCCCCeEEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe
Confidence 45678889999999999999841 24689999999999999999999999999999999999999999999999999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 264 v~lwd 268 (354)
T 2pbi_B 264 CRLYD 268 (354)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 25
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.71 E-value=4.2e-16 Score=94.28 Aligned_cols=80 Identities=25% Similarity=0.270 Sum_probs=75.2
Q ss_pred ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444 6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK 85 (88)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~ 85 (88)
.....+.+|...|.+++|+ ++++.+++++.|+.+++|++.++..+..+.+|...|.+++|+|++.++++++.|++++
T Consensus 421 ~~~~~~~~h~~~v~~v~~s---~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~ 497 (694)
T 3dm0_A 421 VAQRRLTGHSHFVEDVVLS---SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497 (694)
T ss_dssp EEEEEEECCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred cccceecCCCCcEEEEEEC---CCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence 3456788999999999999 8999999999999999999999988899999999999999999999999999999999
Q ss_pred EcC
Q psy6444 86 ALK 88 (88)
Q Consensus 86 ~~~ 88 (88)
+||
T Consensus 498 iwd 500 (694)
T 3dm0_A 498 LWN 500 (694)
T ss_dssp EEC
T ss_pred EEE
Confidence 997
No 26
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.70 E-value=2.3e-16 Score=88.20 Aligned_cols=80 Identities=25% Similarity=0.233 Sum_probs=70.2
Q ss_pred eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC-----CCEEEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444 7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDT-----GDWIGTFEGHKGCVWGVDINKDASKAASGAAD 81 (88)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d 81 (88)
...++.+|++.|.+++|+| .+++.+++++.|+.+++|++.. +..+..+.+|...|..++|++++.++++++.|
T Consensus 9 l~~~l~gH~~~V~~l~~~~--~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSA--GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEECCCSSCEEEEEECS--SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEccccceEEEEEccC--CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 4668899999999999994 3458999999999999998753 23467788999999999999999999999999
Q ss_pred CeEEEcC
Q psy6444 82 FQAKALK 88 (88)
Q Consensus 82 ~~i~~~~ 88 (88)
+++++||
T Consensus 87 ~~v~~wd 93 (319)
T 3frx_A 87 KTLRLWD 93 (319)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999996
No 27
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.70 E-value=3.3e-16 Score=88.35 Aligned_cols=85 Identities=22% Similarity=0.212 Sum_probs=71.9
Q ss_pred CCCccceeEEecCCCC-CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEE---EecCCCCeEEEEEECCCCCeEE
Q psy6444 1 MASIRQIPLTCSGHTR-PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIG---TFEGHKGCVWGVDINKDASKAA 76 (88)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~ 76 (88)
|...-..+.++.+|.. .+..++|+ ++|+.+++++.|+.+++|++..+.... ...+|...|.+++|+|++.+++
T Consensus 1 ~~~~~~~~~~~~~h~~~~v~~l~~s---p~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~ 77 (345)
T 3fm0_A 1 MKDSLVLLGRVPAHPDSRCWFLAWN---PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLA 77 (345)
T ss_dssp ---CEEEEEEECCSTTSCEEEEEEC---TTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEE
T ss_pred CCccEEEeeeecCCCCCcEEEEEEC---CCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEE
Confidence 3445567888999988 89999999 799999999999999999987665332 2367999999999999999999
Q ss_pred EecCCCeEEEcC
Q psy6444 77 SGAADFQAKALK 88 (88)
Q Consensus 77 ~~~~d~~i~~~~ 88 (88)
+++.|+++++||
T Consensus 78 s~s~D~~v~iw~ 89 (345)
T 3fm0_A 78 SASFDATTCIWK 89 (345)
T ss_dssp EEETTSCEEEEE
T ss_pred EEECCCcEEEEE
Confidence 999999999995
No 28
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.70 E-value=1.1e-15 Score=84.76 Aligned_cols=82 Identities=23% Similarity=0.338 Sum_probs=76.5
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
+++....+.+|...|.+++|+ ++++.+++++.|+.+++|++.++..+..+.+|...+.++.|+|++.++++++.|+.
T Consensus 54 ~~~~~~~~~~h~~~v~~~~~~---~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 130 (312)
T 4ery_A 54 DGKFEKTISGHKLGISDVAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130 (312)
T ss_dssp TCCEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred CcccchhhccCCCceEEEEEc---CCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCc
Confidence 455677888999999999999 79999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 131 i~iwd 135 (312)
T 4ery_A 131 VRIWD 135 (312)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 29
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.69 E-value=6.4e-16 Score=88.31 Aligned_cols=82 Identities=21% Similarity=0.189 Sum_probs=75.7
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
.++....+.+|...|.+++|+ ++++.+++++.|+.+++|++.++..+..+.+|...|.+++|+|++.++++++.|+.
T Consensus 128 ~~~~~~~~~~h~~~v~~~~~~---~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 204 (420)
T 3vl1_A 128 FNLQREIDQAHVSEITKLKFF---PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGT 204 (420)
T ss_dssp SCEEEEETTSSSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred CcceeeecccccCccEEEEEC---CCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCc
Confidence 455666778999999999999 79999999999999999999988888899999999999999999999999999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 205 v~iwd 209 (420)
T 3vl1_A 205 IRLWE 209 (420)
T ss_dssp EEEEE
T ss_pred EEEeE
Confidence 99996
No 30
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.69 E-value=3.8e-16 Score=87.93 Aligned_cols=81 Identities=19% Similarity=0.129 Sum_probs=71.1
Q ss_pred ceeEEecCCCCCEEEEEE-----EecCCCCcEEEEEeCCCCEEEEECCCC-------CEEEEecCCCCeEEEEEECCCCC
Q psy6444 6 QIPLTCSGHTRPVVHLAF-----SDITESGYFLISACKDGKPMLRQGDTG-------DWIGTFEGHKGCVWGVDINKDAS 73 (88)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~ 73 (88)
....++++|+..|.+++| ++ ++++.+++++.|+.+++|++... .....+.+|...|..++|+|++.
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~--~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKEN--EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTT--CCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred eeeeeeccchhhhhheeeEEEeecC--CCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 456789999999999999 62 48899999999999999998643 34567889999999999999999
Q ss_pred eEEEecCCCeEEEcC
Q psy6444 74 KAASGAADFQAKALK 88 (88)
Q Consensus 74 ~~~~~~~d~~i~~~~ 88 (88)
++++++.|+++++||
T Consensus 90 ~l~s~s~D~~v~lwd 104 (343)
T 2xzm_R 90 FAISSSWDKTLRLWD 104 (343)
T ss_dssp EEEEEETTSEEEEEE
T ss_pred EEEEEcCCCcEEEEE
Confidence 999999999999996
No 31
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.69 E-value=8.7e-16 Score=86.94 Aligned_cols=81 Identities=17% Similarity=0.111 Sum_probs=69.3
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEecCC
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGAAD 81 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d 81 (88)
.++++.++.+|...|.+++|+ +++ .++++++.|+.|++||...++ +..+.+|.+.|.+++|+|++. ++++++.|
T Consensus 246 ~~~~~~~~~~h~~~v~~v~fs---p~g~~~lasgs~D~~i~vwd~~~~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D 321 (344)
T 4gqb_B 246 STSCVLSSAVHSQCVTGLVFS---PHSVPFLASLSEDCSLAVLDSSLSE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWD 321 (344)
T ss_dssp C--CCEEEECCSSCEEEEEEC---SSSSCCEEEEETTSCEEEECTTCCE-EEEECCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred CCcEEEEEcCCCCCEEEEEEc---cCCCeEEEEEeCCCeEEEEECCCCc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCC
Confidence 466788899999999999999 676 678999999999999998665 456789999999999999886 45689999
Q ss_pred CeEEEcC
Q psy6444 82 FQAKALK 88 (88)
Q Consensus 82 ~~i~~~~ 88 (88)
++|++|+
T Consensus 322 ~~v~~w~ 328 (344)
T 4gqb_B 322 HQVVHHV 328 (344)
T ss_dssp SCEEEEE
T ss_pred CeEEEEE
Confidence 9999995
No 32
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.5e-16 Score=88.59 Aligned_cols=81 Identities=22% Similarity=0.261 Sum_probs=70.5
Q ss_pred cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC--CCCEEEEecCCCCeEEEEEECCC--CCeEEEecC
Q psy6444 5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGD--TGDWIGTFEGHKGCVWGVDINKD--ASKAASGAA 80 (88)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~ 80 (88)
|.++..+.+|...|.+++|+ ++++.+++++.|+.+.+|++. ....+..+.+|...|.+++|+++ +.++++++.
T Consensus 1 G~~~~~~~~h~~~v~~~~~s---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 77 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLD---YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 77 (379)
T ss_dssp ----CCEEECCCCEEEEEEC---SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred CCccEEecCCcccEEEEEEc---CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc
Confidence 35677889999999999999 799999999999999999987 44566788899999999999987 899999999
Q ss_pred CCeEEEcC
Q psy6444 81 DFQAKALK 88 (88)
Q Consensus 81 d~~i~~~~ 88 (88)
|+.+++||
T Consensus 78 dg~v~iwd 85 (379)
T 3jrp_A 78 DGKVLIWK 85 (379)
T ss_dssp TSCEEEEE
T ss_pred CCEEEEEE
Confidence 99999996
No 33
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.67 E-value=1.7e-15 Score=85.75 Aligned_cols=80 Identities=16% Similarity=0.162 Sum_probs=74.4
Q ss_pred ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444 6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK 85 (88)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~ 85 (88)
+....+.+|...|.+++|+ +++..+++++.|+.+++|+..++.....+..+...+..++|+|++..+++++.|+.++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s---~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWC---KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp CEEEEEECCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred EEEEEecCCCCeEEEEEEC---CCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence 4567899999999999999 7999999999999999999988888888888889999999999999999999999999
Q ss_pred EcC
Q psy6444 86 ALK 88 (88)
Q Consensus 86 ~~~ 88 (88)
+|+
T Consensus 132 v~~ 134 (354)
T 2pbi_B 132 VYP 134 (354)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
No 34
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.67 E-value=4.8e-16 Score=86.78 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=63.7
Q ss_pred EEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC--EEEEecCCCCeEEEEEECC--CCCeEEEecCCCeE
Q psy6444 9 LTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINK--DASKAASGAADFQA 84 (88)
Q Consensus 9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~d~~i 84 (88)
..+.+|...|.+++|+ ++|+.+++++.|+.+++|++.++. .+..+.+|...|..++|++ ++.++++++.|+++
T Consensus 7 ~~~~~H~~~V~~v~~s---~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMD---YYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp -------CCEEEEEEC---GGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred eecccccCeEEEeeEc---CCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 3467899999999999 799999999999999999997664 4577889999999999986 48899999999999
Q ss_pred EEcC
Q psy6444 85 KALK 88 (88)
Q Consensus 85 ~~~~ 88 (88)
++||
T Consensus 84 ~iWd 87 (316)
T 3bg1_A 84 IIWR 87 (316)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9997
No 35
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.67 E-value=1.5e-15 Score=91.01 Aligned_cols=80 Identities=24% Similarity=0.215 Sum_probs=72.6
Q ss_pred ceeEEecCCCCCEEEEEEEecCCCCc-EEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444 6 QIPLTCSGHTRPVVHLAFSDITESGY-FLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA 84 (88)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i 84 (88)
.....+.+|...|.+++|+ +++. .+++++.|+.+++|+...++....+.+|...|.+++|+|++.++++++.|+++
T Consensus 138 ~~~~~l~gh~~~v~~v~f~---p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i 214 (611)
T 1nr0_A 138 TSNGNLTGQARAMNSVDFK---PSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI 214 (611)
T ss_dssp CBCBCCCCCSSCEEEEEEC---SSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCcceecCCCCCceEEEEC---CCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcE
Confidence 3455678999999999999 6775 69999999999999998888888899999999999999999999999999999
Q ss_pred EEcC
Q psy6444 85 KALK 88 (88)
Q Consensus 85 ~~~~ 88 (88)
++||
T Consensus 215 ~lwd 218 (611)
T 1nr0_A 215 VLYN 218 (611)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
No 36
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.67 E-value=2.7e-15 Score=84.62 Aligned_cols=75 Identities=27% Similarity=0.349 Sum_probs=68.2
Q ss_pred ecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC--EEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 11 CSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 11 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
..+|...|.+++|+ ++++.+++++.|+.+++|+...+. .+..+.+|...|.+++|+|++.++++++.|+++++||
T Consensus 57 ~~~h~~~v~~~~~s---p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd 133 (345)
T 3fm0_A 57 SEGHQRTVRKVAWS---PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133 (345)
T ss_dssp CSSCSSCEEEEEEC---TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccccCCcEEEEEEC---CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEE
Confidence 36799999999999 799999999999999999987653 5677889999999999999999999999999999996
No 37
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.67 E-value=2.2e-15 Score=84.38 Aligned_cols=81 Identities=25% Similarity=0.206 Sum_probs=72.1
Q ss_pred cceeEEecCCCCCEEEEEEEecCCC---CcEEEEEeCCCCEEEEECCC-CCEE-EEecCCCCeEEEEEECCCCCeEEEec
Q psy6444 5 RQIPLTCSGHTRPVVHLAFSDITES---GYFLISACKDGKPMLRQGDT-GDWI-GTFEGHKGCVWGVDINKDASKAASGA 79 (88)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~ 79 (88)
.+.+..+.+|.+.|.+++|+ ++ |+.+++++.|+.+++|++.+ +..+ ..+.+|...|.+++|+|++.++++++
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~---~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFS---PPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp TCCEECSSCCSSCEEEEEEC---CTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred cceeEeccCCCCceEEEEEc---CCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc
Confidence 35677888999999999999 56 69999999999999999986 4444 67788999999999999999999999
Q ss_pred CCCeEEEcC
Q psy6444 80 ADFQAKALK 88 (88)
Q Consensus 80 ~d~~i~~~~ 88 (88)
.|+.+++||
T Consensus 106 ~dg~v~iwd 114 (368)
T 3mmy_A 106 CDKTAKMWD 114 (368)
T ss_dssp TTSEEEEEE
T ss_pred CCCcEEEEE
Confidence 999999996
No 38
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.67 E-value=2.1e-15 Score=85.93 Aligned_cols=75 Identities=25% Similarity=0.351 Sum_probs=68.4
Q ss_pred cCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC-CCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 12 SGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGD-TGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 12 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
.+|...|.++.|+| .+++.+++++.|+.+++||+. .+..+..+.+|...|.+++|+|++.++++++.|+++++||
T Consensus 202 ~~h~~~v~~~~~~~--~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd 277 (380)
T 3iz6_a 202 SGHTADVLSLSINS--LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277 (380)
T ss_dssp SSCCSCEEEEEECS--SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEE
T ss_pred CCCccCeEEEEeec--CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEE
Confidence 57889999999985 688999999999999999997 3466788899999999999999999999999999999996
No 39
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.66 E-value=6.7e-15 Score=81.31 Aligned_cols=73 Identities=21% Similarity=0.221 Sum_probs=64.7
Q ss_pred CCCCCEEEEEEEecCCCCcEEEEE--eCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 13 GHTRPVVHLAFSDITESGYFLISA--CKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 13 ~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
.+...+..+.|+ +.++.++++ +.|+.+++|++.++..+..+.+|.+.|.+++|+|++.++++++.|++|++||
T Consensus 238 ~~~~~v~~~~~~---~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 238 DAHSQVCSILWS---PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp ECSSCEEEEEEE---TTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred cceeeeeeeeec---ccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 356678889999 677766654 4789999999999999999999999999999999999999999999999997
No 40
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.1e-15 Score=83.94 Aligned_cols=80 Identities=23% Similarity=0.390 Sum_probs=71.7
Q ss_pred ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC--CEEEEecCCCCeEEEEEECCC--CCeEEEecCC
Q psy6444 6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG--DWIGTFEGHKGCVWGVDINKD--ASKAASGAAD 81 (88)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~d 81 (88)
+.+..+.+|...|.+++|+ +++..+++++.|+.+++|+...+ ..+..+.+|...|..++|+|+ +..+++++.|
T Consensus 144 ~~~~~~~~h~~~v~~v~~~---p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D 220 (330)
T 2hes_X 144 ECISVLQEHSQDVKHVIWH---PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD 220 (330)
T ss_dssp EEEEEECCCSSCEEEEEEC---SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETT
T ss_pred EEEEEeccCCCceEEEEEC---CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCC
Confidence 4567788999999999999 79999999999999999998755 467788999999999999998 6788999999
Q ss_pred CeEEEcC
Q psy6444 82 FQAKALK 88 (88)
Q Consensus 82 ~~i~~~~ 88 (88)
+++++||
T Consensus 221 ~~v~iw~ 227 (330)
T 2hes_X 221 STVRVWK 227 (330)
T ss_dssp SCEEEEE
T ss_pred CeEEEEE
Confidence 9999996
No 41
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.66 E-value=5.7e-15 Score=82.72 Aligned_cols=83 Identities=25% Similarity=0.274 Sum_probs=75.3
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEe---cCCCCeEEEEEECCCCCeEEEecC
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTF---EGHKGCVWGVDINKDASKAASGAA 80 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~ 80 (88)
.++.+..+.+|...|.+++|+| .++..+++++.|+.+.+|++.++..+..+ ..|...|.+++|+|++.++++++.
T Consensus 104 ~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 181 (366)
T 3k26_A 104 TMQCIKHYVGHGNAINELKFHP--RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM 181 (366)
T ss_dssp TCCEEEEEESCCSCEEEEEECS--SCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEET
T ss_pred hceEeeeecCCCCcEEEEEECC--CCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecC
Confidence 4567788899999999999993 38999999999999999999988887777 679999999999999999999999
Q ss_pred CCeEEEcC
Q psy6444 81 DFQAKALK 88 (88)
Q Consensus 81 d~~i~~~~ 88 (88)
|+.+++||
T Consensus 182 dg~i~i~d 189 (366)
T 3k26_A 182 DHSLKLWR 189 (366)
T ss_dssp TSCEEEEE
T ss_pred CCCEEEEE
Confidence 99999996
No 42
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.66 E-value=2.2e-15 Score=83.55 Aligned_cols=78 Identities=17% Similarity=0.170 Sum_probs=69.5
Q ss_pred eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC----CEEEEecCCCCeEEEEEECC--CCCeEEEecCC
Q psy6444 8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG----DWIGTFEGHKGCVWGVDINK--DASKAASGAAD 81 (88)
Q Consensus 8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~d 81 (88)
...+.+|.+.|.+++|+ ++++.+++++.|+.+++|++..+ ..+..+.+|...|.+++|+| ++.++++++.|
T Consensus 4 ~~~~~gH~~~v~~~~~~---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d 80 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYD---FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD 80 (351)
T ss_dssp CCEECCCSSCEEEEEEC---SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cccCcccccceeEEEEc---CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence 34568999999999999 79999999999999999999865 35567788999999999999 58999999999
Q ss_pred CeEEEcC
Q psy6444 82 FQAKALK 88 (88)
Q Consensus 82 ~~i~~~~ 88 (88)
+.+++||
T Consensus 81 g~v~vwd 87 (351)
T 3f3f_A 81 KTVKLWE 87 (351)
T ss_dssp SCEEEEE
T ss_pred CeEEEEe
Confidence 9999996
No 43
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.66 E-value=6.4e-15 Score=84.29 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=65.6
Q ss_pred CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
.|.+++|+ ++++.+++++.|+.+++|++.++..+..+.+|...|.+++|+|++.++++++.|+++++||
T Consensus 125 ~v~~v~~s---~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd 193 (393)
T 1erj_A 125 YIRSVCFS---PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 193 (393)
T ss_dssp BEEEEEEC---TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEEC---CCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEE
Confidence 48899999 8999999999999999999998888899999999999999999999999999999999996
No 44
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.66 E-value=7.5e-16 Score=89.03 Aligned_cols=78 Identities=15% Similarity=0.127 Sum_probs=66.7
Q ss_pred EEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC--EEEEecCCCCeEEEEEECC-CCCeEEEecCCCeEE
Q psy6444 9 LTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINK-DASKAASGAADFQAK 85 (88)
Q Consensus 9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~i~ 85 (88)
.....|...|.+++|+| .++..+++|+.||.|.+|++..+. ....+.+|.+.|.+++|+| ++.++++++.|++|+
T Consensus 113 ~~~~~~~~~V~~l~~~P--~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHP--THPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp CEEEECSSCEEEEEECS--SCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ccCCCCCCCEEEEEEeC--CCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 34556888899999996 567899999999999999987654 3455678999999999998 688999999999999
Q ss_pred EcC
Q psy6444 86 ALK 88 (88)
Q Consensus 86 ~~~ 88 (88)
+||
T Consensus 191 iwd 193 (435)
T 4e54_B 191 LQD 193 (435)
T ss_dssp EEE
T ss_pred Eee
Confidence 996
No 45
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.66 E-value=1.1e-14 Score=83.80 Aligned_cols=80 Identities=20% Similarity=0.208 Sum_probs=68.0
Q ss_pred cceeEEecCCCCCEEEEEEEecCCCCcEEEEEe--CCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444 5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISAC--KDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF 82 (88)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~ 82 (88)
++....+..| ..+..+.|+ ++++.+++++ .|+.|.+|++.++..+..+.+|.+.|.+++|+|++.++++++.|+
T Consensus 311 ~~~~~~~~~~-~~v~~~~~~---~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~ 386 (420)
T 4gga_A 311 GACLSAVDAH-SQVCSILWS---PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 386 (420)
T ss_dssp TEEEEEEECS-SCEEEEEEE---TTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTT
T ss_pred cccceeeccc-cceeeeeec---CCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCC
Confidence 3444555544 567888899 6787777654 689999999999999999999999999999999999999999999
Q ss_pred eEEEcC
Q psy6444 83 QAKALK 88 (88)
Q Consensus 83 ~i~~~~ 88 (88)
+|++||
T Consensus 387 tvriWd 392 (420)
T 4gga_A 387 TLRLWR 392 (420)
T ss_dssp EEEEEC
T ss_pred eEEEEE
Confidence 999997
No 46
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.65 E-value=3.6e-16 Score=89.57 Aligned_cols=81 Identities=12% Similarity=0.008 Sum_probs=70.3
Q ss_pred eEEecCCCCCEEEEEEEec-----CCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEecCC
Q psy6444 8 PLTCSGHTRPVVHLAFSDI-----TESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGAAD 81 (88)
Q Consensus 8 ~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d 81 (88)
+..+.+|++.|.+++|+|. +.+++.+++++.|+.+++||+.++..+..+..|...+.+++|+|++. ++++++.|
T Consensus 129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 208 (393)
T 4gq1_A 129 LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERN 208 (393)
T ss_dssp ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETT
T ss_pred ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCC
Confidence 4457899999999999851 12789999999999999999988877778888889999999999874 78899999
Q ss_pred CeEEEcC
Q psy6444 82 FQAKALK 88 (88)
Q Consensus 82 ~~i~~~~ 88 (88)
+++++||
T Consensus 209 ~~v~~wd 215 (393)
T 4gq1_A 209 GNIRIFD 215 (393)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999996
No 47
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.65 E-value=2.9e-15 Score=83.08 Aligned_cols=79 Identities=20% Similarity=0.381 Sum_probs=70.3
Q ss_pred eeEEecCCCCCEEEEEEEecCCCC----cEEEEEeCCCCEEEEECCCC--------------------------------
Q psy6444 7 IPLTCSGHTRPVVHLAFSDITESG----YFLISACKDGKPMLRQGDTG-------------------------------- 50 (88)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-------------------------------- 50 (88)
.+..+.+|...|.+++|+ +++ +.+++++.|+.+++|++..+
T Consensus 206 ~~~~~~~h~~~i~~~~~~---p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (351)
T 3f3f_A 206 VAAKLPGHKSLIRSISWA---PSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDS 282 (351)
T ss_dssp EEEECCCCCSCEEEEEEC---CCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------
T ss_pred eeeecCCCCcceeEEEEC---CCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccc
Confidence 367788899999999999 677 89999999999999998754
Q ss_pred --------------CEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 51 --------------DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 51 --------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
..+..+.+|...|.+++|+|++.++++++.|+.+++||
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 283 NTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp --------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred ccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 45566788999999999999999999999999999996
No 48
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.65 E-value=3.7e-15 Score=82.54 Aligned_cols=81 Identities=22% Similarity=0.300 Sum_probs=70.7
Q ss_pred ceeEEecCCCCCEEEEEEEecCC-CCcEEEEEeCCCCEEEEECCCCC--EEEEecCCCCeEEEEEECCC--CCeEEEecC
Q psy6444 6 QIPLTCSGHTRPVVHLAFSDITE-SGYFLISACKDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKD--ASKAASGAA 80 (88)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~ 80 (88)
+.+.++.+|.++|.+++|+| + +++.+++++.|+.+++|++.++. .+..+.+|...|.+++|+|+ +.++++++.
T Consensus 44 ~~~~~l~gH~~~V~~v~~s~--~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~ 121 (297)
T 2pm7_B 44 KLIDTLTGHEGPVWRVDWAH--PKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS 121 (297)
T ss_dssp CCCEEECCCSSCEEEEEECC--GGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred EEEEEEccccCCeEEEEecC--CCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC
Confidence 56778999999999999973 3 37899999999999999998763 45667789999999999997 789999999
Q ss_pred CCeEEEcC
Q psy6444 81 DFQAKALK 88 (88)
Q Consensus 81 d~~i~~~~ 88 (88)
|+.+++||
T Consensus 122 d~~v~~wd 129 (297)
T 2pm7_B 122 DGKVSVVE 129 (297)
T ss_dssp TSEEEEEE
T ss_pred CCcEEEEE
Confidence 99999996
No 49
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.65 E-value=5.7e-15 Score=84.43 Aligned_cols=80 Identities=23% Similarity=0.326 Sum_probs=74.1
Q ss_pred ceeEEecCCCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCCEEEEe--cCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444 6 QIPLTCSGHTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDTGDWIGTF--EGHKGCVWGVDINKDASKAASGAADF 82 (88)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~d~ 82 (88)
.++..+.+|...|.+++|+ +++ ..+++++.|+.+.+|++.++..+..+ ..|...|.+++|+|++.++++++.|+
T Consensus 122 ~~~~~~~~h~~~v~~~~~~---p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 198 (402)
T 2aq5_A 122 EPVITLEGHTKRVGIVAWH---PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198 (402)
T ss_dssp SCSEEEECCSSCEEEEEEC---SSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTS
T ss_pred CceEEecCCCCeEEEEEEC---cCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCC
Confidence 5677889999999999999 677 69999999999999999988888888 78999999999999999999999999
Q ss_pred eEEEcC
Q psy6444 83 QAKALK 88 (88)
Q Consensus 83 ~i~~~~ 88 (88)
.+++||
T Consensus 199 ~i~iwd 204 (402)
T 2aq5_A 199 RVRVIE 204 (402)
T ss_dssp EEEEEE
T ss_pred cEEEEe
Confidence 999996
No 50
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.64 E-value=1.3e-14 Score=82.30 Aligned_cols=76 Identities=16% Similarity=0.016 Sum_probs=70.0
Q ss_pred EecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEecCCCeEEEcC
Q psy6444 10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGAADFQAKALK 88 (88)
Q Consensus 10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~i~~~~ 88 (88)
...+|...|.+++|+ ++++.+++++.|+.+++|++.++..+..+.+|...|.+++|++++. .+++++.|+.+++||
T Consensus 134 ~~~~h~~~V~~v~~s---pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd 210 (357)
T 4g56_B 134 AKYEHDDIVKTLSVF---SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210 (357)
T ss_dssp EECCCSSCEEEEEEC---SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECC
T ss_pred ccCCCCCCEEEEEEC---CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEE
Confidence 445799999999999 7999999999999999999999999999999999999999999875 678999999999997
No 51
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.63 E-value=7.4e-15 Score=84.04 Aligned_cols=80 Identities=23% Similarity=0.383 Sum_probs=72.9
Q ss_pred ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECC------CCCeEEEec
Q psy6444 6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK------DASKAASGA 79 (88)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~ 79 (88)
.....+.+|...|.+++|+ +++.++++++.|+.+++|+..++..+..+.+|.+.|..++|++ ++..+++++
T Consensus 301 ~~~~~~~~h~~~v~~~~~~---~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 301 TCEVTYIGHKDFVLSVATT---QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp CEEEEEECCSSCEEEEEEC---GGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred cceEEEecccCcEEEEEEC---CCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence 4456788999999999999 7899999999999999999999999999999999999999876 577899999
Q ss_pred CCCeEEEcC
Q psy6444 80 ADFQAKALK 88 (88)
Q Consensus 80 ~d~~i~~~~ 88 (88)
.|+++++|+
T Consensus 378 ~Dg~i~iW~ 386 (393)
T 1erj_A 378 GDCKARIWK 386 (393)
T ss_dssp TTSEEEEEE
T ss_pred CCCcEEECc
Confidence 999999996
No 52
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.63 E-value=4.6e-15 Score=82.82 Aligned_cols=80 Identities=24% Similarity=0.294 Sum_probs=70.0
Q ss_pred eeEEecCCCCCEEEEEEEecCC-CCcEEEEEeCCCCEEEEECCCC--CEEEEecCCCCeEEEEEECCC--CCeEEEecCC
Q psy6444 7 IPLTCSGHTRPVVHLAFSDITE-SGYFLISACKDGKPMLRQGDTG--DWIGTFEGHKGCVWGVDINKD--ASKAASGAAD 81 (88)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~d 81 (88)
.+..+.+|.+.|.+++|+| + +++.+++++.|+.+++|++.++ .....+.+|...|.+++|+|+ +.++++++.|
T Consensus 49 ~~~~l~gH~~~V~~v~~~~--~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D 126 (316)
T 3bg1_A 49 LIADLRGHEGPVWQVAWAH--PMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD 126 (316)
T ss_dssp EEEEEECCSSCEEEEEECC--GGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSS
T ss_pred EEEEEcCCCccEEEEEeCC--CCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCC
Confidence 4677899999999999973 3 4889999999999999999876 356678889999999999998 7789999999
Q ss_pred CeEEEcC
Q psy6444 82 FQAKALK 88 (88)
Q Consensus 82 ~~i~~~~ 88 (88)
+.+++||
T Consensus 127 ~~i~lwd 133 (316)
T 3bg1_A 127 GAISLLT 133 (316)
T ss_dssp SCEEEEE
T ss_pred CCEEEEe
Confidence 9999995
No 53
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.63 E-value=5.1e-15 Score=84.60 Aligned_cols=79 Identities=24% Similarity=0.225 Sum_probs=70.8
Q ss_pred eeEEecCCCCCEEEEEEEecCC-CCcEEEEEeCCCCEEEEECCCC-------CEEEEecCCCCeEEEEEECCCC-CeEEE
Q psy6444 7 IPLTCSGHTRPVVHLAFSDITE-SGYFLISACKDGKPMLRQGDTG-------DWIGTFEGHKGCVWGVDINKDA-SKAAS 77 (88)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~~~~~ 77 (88)
.+..+.+|.+.|.+++|+ + +++.+++++.|+.+.+|++..+ ..+..+.+|...|.+++|+|++ ..+++
T Consensus 73 ~~~~~~~h~~~V~~~~~~---p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s 149 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWC---PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLS 149 (402)
T ss_dssp TCCCBCCCSSCEEEEEEC---TTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEE
T ss_pred CCceEecCCCCEEEEEeC---CCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEE
Confidence 344577899999999999 6 8999999999999999999876 5567888999999999999998 68999
Q ss_pred ecCCCeEEEcC
Q psy6444 78 GAADFQAKALK 88 (88)
Q Consensus 78 ~~~d~~i~~~~ 88 (88)
++.|+.+++||
T Consensus 150 ~~~dg~i~iwd 160 (402)
T 2aq5_A 150 AGCDNVILVWD 160 (402)
T ss_dssp EETTSCEEEEE
T ss_pred EcCCCEEEEEE
Confidence 99999999996
No 54
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.63 E-value=2.4e-14 Score=79.72 Aligned_cols=82 Identities=20% Similarity=0.215 Sum_probs=66.8
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEe---------------------------
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTF--------------------------- 56 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 56 (88)
.++.+..+.+|.+.|.+++|+ ++++.+++++.|+.+++|++.+...+..+
T Consensus 204 ~~~~~~~~~~h~~~v~~~~~s---~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~ 280 (340)
T 4aow_A 204 NCKLKTNHIGHTGYLNTVTVS---PDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIK 280 (340)
T ss_dssp TTEEEEEECCCSSCEEEEEEC---TTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEE
T ss_pred CCceeeEecCCCCcEEEEEEC---CCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEE
Confidence 456778889999999999999 79999999999999999988754433221
Q ss_pred ----------------------cCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 57 ----------------------EGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 57 ----------------------~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
.+|...|.+++|+|++.++++++.|+.|++||
T Consensus 281 iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 281 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 13456788889999999999999999999996
No 55
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.63 E-value=8.9e-15 Score=88.57 Aligned_cols=80 Identities=23% Similarity=0.184 Sum_probs=69.9
Q ss_pred eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC-----CEEEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444 7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG-----DWIGTFEGHKGCVWGVDINKDASKAASGAAD 81 (88)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d 81 (88)
....+++|+..|.+++|+| .+++.+++++.|+.+++|++... .....+.+|...|.+++|+|++.++++++.|
T Consensus 374 ~~~~l~~H~~~V~~v~~~~--~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPI--DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp EEEEEECCSSCEEEEECCT--TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred hhhhcccCCceeEEEEecC--CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 3456889999999999994 45689999999999999998653 2456788999999999999999999999999
Q ss_pred CeEEEcC
Q psy6444 82 FQAKALK 88 (88)
Q Consensus 82 ~~i~~~~ 88 (88)
++|++||
T Consensus 452 g~v~vwd 458 (694)
T 3dm0_A 452 GELRLWD 458 (694)
T ss_dssp SEEEEEE
T ss_pred CcEEEEE
Confidence 9999996
No 56
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.63 E-value=1.4e-14 Score=91.60 Aligned_cols=79 Identities=25% Similarity=0.276 Sum_probs=74.3
Q ss_pred eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444 7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA 86 (88)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~ 86 (88)
....+.+|.+.|.+++|+ ++++.+++++.|+.+.+|+..++..+..+.+|...|.+++|+|++.++++++.|+.+++
T Consensus 607 ~~~~~~~h~~~v~~~~~s---~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFS---QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI 683 (1249)
T ss_dssp CSEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ceEEEecccccEEEEEEC---CCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEE
Confidence 345678999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q psy6444 87 LK 88 (88)
Q Consensus 87 ~~ 88 (88)
||
T Consensus 684 wd 685 (1249)
T 3sfz_A 684 WD 685 (1249)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 57
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.62 E-value=5.8e-15 Score=85.83 Aligned_cols=79 Identities=10% Similarity=-0.039 Sum_probs=69.7
Q ss_pred eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444 8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKAL 87 (88)
Q Consensus 8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~ 87 (88)
...+.+|...|.+++|+| ..+..+++++.|+.+++||+.++..+....+|...+.+++|+|++.++++++.|+.+++|
T Consensus 142 ~~~~~~h~~~V~~v~~~p--~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iw 219 (434)
T 2oit_A 142 HKLLKDAGGMVIDMKWNP--TVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQY 219 (434)
T ss_dssp EECCCSGGGSEEEEEECS--SCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred eeccCCCCCceEEEEECC--CCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEE
Confidence 456677999999999994 347899999999999999998876666667788899999999999999999999999999
Q ss_pred C
Q psy6444 88 K 88 (88)
Q Consensus 88 ~ 88 (88)
|
T Consensus 220 d 220 (434)
T 2oit_A 220 L 220 (434)
T ss_dssp C
T ss_pred c
Confidence 7
No 58
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.61 E-value=2.3e-14 Score=87.40 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=77.0
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
.+..+..+.+|.+.|.+++|+ ++++.+++++.++.+.+|++.++..+..+.+|...|..++|+|++.++++++.|+.
T Consensus 44 ~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 120 (814)
T 3mkq_A 44 TQVEVRSIQVTETPVRAGKFI---ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120 (814)
T ss_dssp TTEEEEEEECCSSCEEEEEEE---GGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred CCceEEEEecCCCcEEEEEEe---CCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCE
Confidence 466778889999999999999 79999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 121 i~vw~ 125 (814)
T 3mkq_A 121 VKLWN 125 (814)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 59
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.61 E-value=4.9e-15 Score=83.74 Aligned_cols=80 Identities=11% Similarity=0.052 Sum_probs=68.1
Q ss_pred ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC---EEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444 6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD---WIGTFEGHKGCVWGVDINKDASKAASGAADF 82 (88)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~ 82 (88)
+.+..+.+|...|.+++|+ ++++.+++++.|+.+++|++..+. ....+..|...+.+++|+|++.++++++.|+
T Consensus 46 ~~~~~~~~h~~~v~~~~~s---~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 122 (377)
T 3dwl_C 46 KHARTFSDHDKIVTCVDWA---PKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR 122 (377)
T ss_dssp EECCCBCCCSSCEEEEEEC---TTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSS
T ss_pred EEEEEEecCCceEEEEEEe---CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCC
Confidence 5667788999999999999 789999999999999999998766 5667788999999999999999999999999
Q ss_pred eEEEcC
Q psy6444 83 QAKALK 88 (88)
Q Consensus 83 ~i~~~~ 88 (88)
.+++||
T Consensus 123 ~i~iwd 128 (377)
T 3dwl_C 123 VISVCY 128 (377)
T ss_dssp CEEECC
T ss_pred eEEEEE
Confidence 999997
No 60
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.61 E-value=6.5e-15 Score=89.76 Aligned_cols=80 Identities=14% Similarity=0.161 Sum_probs=74.9
Q ss_pred ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444 6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK 85 (88)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~ 85 (88)
...+.+.+|.+.|.+++|+ ++++++++++.++.+.+|++.++..+..+.+|...|.+++|+|++.++++++.|+.++
T Consensus 4 ~~~~~~~~h~~~v~~i~~s---p~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFH---PTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (814)
T ss_dssp CCEEEEEEECSCEEEEEEC---SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred ccceeeecCCCceEEEEEC---CCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence 3466788999999999999 7999999999999999999999988999999999999999999999999999999999
Q ss_pred EcC
Q psy6444 86 ALK 88 (88)
Q Consensus 86 ~~~ 88 (88)
+||
T Consensus 81 vw~ 83 (814)
T 3mkq_A 81 VFN 83 (814)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
No 61
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.2e-14 Score=83.61 Aligned_cols=81 Identities=17% Similarity=0.127 Sum_probs=69.3
Q ss_pred ccceeEEe-cCCCCCEEEEEEEecCC-CCcEEEEEeCCCCEEEEECCC---CC---EEEEecCCCCeEEEEEECCCCCeE
Q psy6444 4 IRQIPLTC-SGHTRPVVHLAFSDITE-SGYFLISACKDGKPMLRQGDT---GD---WIGTFEGHKGCVWGVDINKDASKA 75 (88)
Q Consensus 4 ~~~~~~~~-~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~i~~~~~~~~~~~~ 75 (88)
.++.+..+ .+|.+.|.+++|+ + +++.+++++.|+.+++|++.. +. ....+ .|...|.+++|+|++..+
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s---~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l 126 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVS---PGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAF 126 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEE---CSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEE
T ss_pred cceEEeeeccCCCCceEEEEEC---CCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEE
Confidence 45677788 8899999999999 7 999999999999999999865 32 12222 488999999999999999
Q ss_pred EEecCCCeEEEcC
Q psy6444 76 ASGAADFQAKALK 88 (88)
Q Consensus 76 ~~~~~d~~i~~~~ 88 (88)
++++.|+.+++||
T Consensus 127 ~s~s~dg~i~vwd 139 (437)
T 3gre_A 127 AVSSKDGQIIVLK 139 (437)
T ss_dssp EEEETTSEEEEEE
T ss_pred EEEeCCCEEEEEE
Confidence 9999999999996
No 62
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.3e-14 Score=78.89 Aligned_cols=80 Identities=18% Similarity=0.113 Sum_probs=73.0
Q ss_pred cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444 5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA 84 (88)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i 84 (88)
.+....+.+|.+.|.+++| | +++.+++++.|+.+++|++.++.....+..|...+.+++|+|++..+++++.|+.+
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~---~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 83 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-V---DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI 83 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-E---ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred HHHHHHhhCCCCCcEEEEe-c---CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeE
Confidence 4678889999999999999 4 68889999999999999998888888888899999999999999999999999999
Q ss_pred EEcC
Q psy6444 85 KALK 88 (88)
Q Consensus 85 ~~~~ 88 (88)
++|+
T Consensus 84 ~~~~ 87 (313)
T 3odt_A 84 NGVP 87 (313)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
No 63
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.60 E-value=3e-14 Score=80.98 Aligned_cols=59 Identities=12% Similarity=0.025 Sum_probs=52.5
Q ss_pred CcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEE-EEEECCCCCeEEEecCCCeEEEcC
Q psy6444 30 GYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVW-GVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
+..+++++.|+.|++||+.+++.+..+.+|...+. .++|+|++.++++++.|++|++||
T Consensus 295 g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 295 DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence 66889999999999999999999999999877655 589999999999999999999996
No 64
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.60 E-value=3.8e-14 Score=80.43 Aligned_cols=82 Identities=24% Similarity=0.197 Sum_probs=74.0
Q ss_pred ccceeEEecC-------------CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEec------CC-----
Q psy6444 4 IRQIPLTCSG-------------HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFE------GH----- 59 (88)
Q Consensus 4 ~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~----- 59 (88)
.++.+..+.+ |...+.+++|+ ++++.+++++.|+.+.+|++.++..+..+. .|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 343 (397)
T 1sq9_A 267 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN---DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDIL 343 (397)
T ss_dssp TCCEEEEECBC--------CCBSBSSCEEEEEEC---SSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCC
T ss_pred CCcccceeccCcccccccccccccCCcEEEEEEC---CCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhh
Confidence 4456677777 89999999999 799999999999999999999888888888 77
Q ss_pred ----------CCeEEEEEECCCC----------CeEEEecCCCeEEEcC
Q psy6444 60 ----------KGCVWGVDINKDA----------SKAASGAADFQAKALK 88 (88)
Q Consensus 60 ----------~~~i~~~~~~~~~----------~~~~~~~~d~~i~~~~ 88 (88)
...|..++|+|++ .++++++.|+.+++||
T Consensus 344 ~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 344 AVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp CBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred ccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 8999999999998 7899999999999996
No 65
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.1e-14 Score=82.92 Aligned_cols=81 Identities=15% Similarity=0.262 Sum_probs=73.8
Q ss_pred ceeEEec-CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCC-CeEEEecCCCe
Q psy6444 6 QIPLTCS-GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDA-SKAASGAADFQ 83 (88)
Q Consensus 6 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~ 83 (88)
.++..+. +|...+.+++|+| .++..+++++.|+.+.+|++.++..+..+..|...+..++|+|++ .++++++.|+.
T Consensus 252 ~~~~~~~~~~~~~v~~~~~s~--~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 252 TPLQTLNQGHQKGILSLDWCH--QDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp SCSBCCCSCCSSCEEEEEECS--SCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred CCcEEeecCccCceeEEEeCC--CCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 5566777 8999999999993 389999999999999999999999999999999999999999998 79999999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 330 i~iw~ 334 (416)
T 2pm9_A 330 IEVQT 334 (416)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 66
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.59 E-value=1.6e-14 Score=85.52 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=74.0
Q ss_pred ccceeEEecC-CCCCEEEEEEEecCC----------CCcEEEEEeCCCCEEEEECCCC-CEEEEecCCCCeEEEEEECCC
Q psy6444 4 IRQIPLTCSG-HTRPVVHLAFSDITE----------SGYFLISACKDGKPMLRQGDTG-DWIGTFEGHKGCVWGVDINKD 71 (88)
Q Consensus 4 ~~~~~~~~~~-~~~~v~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~ 71 (88)
.++.+..+.+ |...|.+++|+ + +++.+++++.|+.+++|++.++ ..+..+.+|...|.+++|+|+
T Consensus 519 ~~~~~~~~~~~h~~~v~~~~~s---p~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~ 595 (615)
T 1pgu_A 519 SREVKTSRWAFRTSKINAISWK---PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP 595 (615)
T ss_dssp TTEEEECCSCCCSSCEEEEEEC---CCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET
T ss_pred CCcceeEeecCCCCceeEEEEc---CccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCC
Confidence 4566777787 99999999999 7 8999999999999999999887 677888999999999999999
Q ss_pred CCeEEEecCCCeEEEcC
Q psy6444 72 ASKAASGAADFQAKALK 88 (88)
Q Consensus 72 ~~~~~~~~~d~~i~~~~ 88 (88)
+. +++++.|+.+++||
T Consensus 596 ~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 596 ST-LVSSGADACIKRWN 611 (615)
T ss_dssp TE-EEEEETTSCEEEEE
T ss_pred CC-eEEecCCceEEEEe
Confidence 99 99999999999996
No 67
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.58 E-value=7.5e-14 Score=76.88 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=72.2
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
.++++..+.+|...+.+++|+ +++ .+++++.|+.+.+|++.++..+..+..+...+..++|+|++. +++++.|+.
T Consensus 214 ~~~~~~~~~~~~~~i~~~~~~---~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~ 288 (313)
T 3odt_A 214 TGDVLRTYEGHESFVYCIKLL---PNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNL 288 (313)
T ss_dssp TCCEEEEEECCSSCEEEEEEC---TTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSC
T ss_pred chhhhhhhhcCCceEEEEEEe---cCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCc
Confidence 456788889999999999999 677 588999999999999999999999999999999999999998 567889999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 289 i~iw~ 293 (313)
T 3odt_A 289 VRIFS 293 (313)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 68
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.58 E-value=4.4e-14 Score=80.15 Aligned_cols=81 Identities=15% Similarity=0.161 Sum_probs=71.5
Q ss_pred cceeEEecCCCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCCEEEEec--CCCCeEEEEEECC-CCCeEEEecC
Q psy6444 5 RQIPLTCSGHTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDTGDWIGTFE--GHKGCVWGVDINK-DASKAASGAA 80 (88)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~~~~~~~ 80 (88)
......+.+|...|.+++|+ +++ +.+++++.|+.+.+|++..+.....+. +|...|.+++|+| ++.++++++.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 139 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWH---PTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI 139 (383)
T ss_dssp CEEEEEECCCSSCEEEEEEC---SSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET
T ss_pred cceEEeccCCCCCEEEEEEC---CCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC
Confidence 44577889999999999999 687 899999999999999998777665554 6999999999999 6789999999
Q ss_pred CCeEEEcC
Q psy6444 81 DFQAKALK 88 (88)
Q Consensus 81 d~~i~~~~ 88 (88)
|+.+++||
T Consensus 140 d~~i~iwd 147 (383)
T 3ei3_B 140 RGATTLRD 147 (383)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 99999996
No 69
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=4.6e-14 Score=79.38 Aligned_cols=82 Identities=21% Similarity=0.302 Sum_probs=73.1
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCC--CcEEEEEeCCCCEEEEECCCCC--EEEEecCCCCeEEEEEECCC--CCeEEE
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITES--GYFLISACKDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKD--ASKAAS 77 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~~~~ 77 (88)
....+..+.+|...|.+++|+ ++ ++.+++++.|+.+.+|++..+. .+..+..|...+.+++|+|+ +.++++
T Consensus 44 ~~~~~~~~~~h~~~v~~~~~~---~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 120 (379)
T 3jrp_A 44 THKLIDTLTGHEGPVWRVDWA---HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV 120 (379)
T ss_dssp EEEEEEEECCCSSCEEEEEEC---CGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred cceeeeEecCCCCcEEEEEeC---CCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEE
Confidence 345677888999999999998 45 8999999999999999998776 66778889999999999999 899999
Q ss_pred ecCCCeEEEcC
Q psy6444 78 GAADFQAKALK 88 (88)
Q Consensus 78 ~~~d~~i~~~~ 88 (88)
++.|+.+++||
T Consensus 121 ~~~d~~i~v~d 131 (379)
T 3jrp_A 121 ASSDGKVSVVE 131 (379)
T ss_dssp EETTSEEEEEE
T ss_pred ecCCCcEEEEe
Confidence 99999999996
No 70
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.57 E-value=7.7e-14 Score=79.17 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=74.3
Q ss_pred ccceeEEecC---C---CCCEEEEEEEecCCCCcEEEEEeCC---CCEEEEECCCCCEEEEecC-------------CCC
Q psy6444 4 IRQIPLTCSG---H---TRPVVHLAFSDITESGYFLISACKD---GKPMLRQGDTGDWIGTFEG-------------HKG 61 (88)
Q Consensus 4 ~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------------~~~ 61 (88)
.++++..+.. | ...+.+++|+ +++..+++++.+ +.+.+|++.++..+..+.. |..
T Consensus 216 ~~~~~~~~~~~~~h~~~~~~i~~i~~~---~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (397)
T 1sq9_A 216 TLRPLYNFESQHSMINNSNSIRSVKFS---PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS 292 (397)
T ss_dssp TTEEEEEEECCC---CCCCCEEEEEEC---SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS
T ss_pred CCceeEEEeccccccccCCccceEEEC---CCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC
Confidence 3566777888 8 8999999999 789999999999 9999999998988888888 999
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 62 CVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 62 ~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
.+..++|+|++.++++++.|+.+++||
T Consensus 293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 293 WVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 999999999999999999999999996
No 71
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.57 E-value=7.9e-14 Score=79.10 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=70.7
Q ss_pred cceeEEecCCCCCEEEEEEEecCCCCc-EEEEEeCCCCEEEEECCC----CCEEEEecCCCCeEEEEEECC-CCCeEEEe
Q psy6444 5 RQIPLTCSGHTRPVVHLAFSDITESGY-FLISACKDGKPMLRQGDT----GDWIGTFEGHKGCVWGVDINK-DASKAASG 78 (88)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~ 78 (88)
++++..+.+|...|.+++|+ ++++ .+++++.|+.+++|++.+ +..+..+ +|...+.+++|+| ++.+++++
T Consensus 194 ~~~~~~~~~h~~~v~~~~~~---~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~ 269 (383)
T 3ei3_B 194 GHEIFKEKLHKAKVTHAEFN---PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTT 269 (383)
T ss_dssp SCEEEEEECSSSCEEEEEEC---SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEE
T ss_pred CCEEEEeccCCCcEEEEEEC---CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEE
Confidence 45778888999999999999 6887 999999999999999986 4455555 6889999999999 99999999
Q ss_pred cCCCeEEEcC
Q psy6444 79 AADFQAKALK 88 (88)
Q Consensus 79 ~~d~~i~~~~ 88 (88)
+.|+.+++||
T Consensus 270 ~~d~~i~iwd 279 (383)
T 3ei3_B 270 DQRNEIRVYS 279 (383)
T ss_dssp ESSSEEEEEE
T ss_pred cCCCcEEEEE
Confidence 9999999996
No 72
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.57 E-value=6.9e-15 Score=85.03 Aligned_cols=81 Identities=14% Similarity=0.062 Sum_probs=68.5
Q ss_pred cceeEEecCCCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCCEE---EEecCCCCeEEEEEECCCCCeEEEecC
Q psy6444 5 RQIPLTCSGHTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDTGDWI---GTFEGHKGCVWGVDINKDASKAASGAA 80 (88)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~ 80 (88)
++.+..+.+|...|.+++|+ +++ ..+++++.|+.+++||+...... ....+|...|.+++|+|++.++++++.
T Consensus 240 ~~~~~~~~~h~~~v~~v~~~---p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~ 316 (435)
T 4e54_B 240 GKELWNLRMHKKKVTHVALN---PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ 316 (435)
T ss_dssp SCBCCCSBCCSSCEEEEEEC---TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES
T ss_pred cceeEEEecccceEEeeeec---CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC
Confidence 45567788999999999999 565 57889999999999999765533 233568899999999999999999999
Q ss_pred CCeEEEcC
Q psy6444 81 DFQAKALK 88 (88)
Q Consensus 81 d~~i~~~~ 88 (88)
|+.|++||
T Consensus 317 D~~i~iwd 324 (435)
T 4e54_B 317 KSEIRVYS 324 (435)
T ss_dssp SSCEEEEE
T ss_pred CCEEEEEE
Confidence 99999996
No 73
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.57 E-value=6e-14 Score=79.54 Aligned_cols=81 Identities=17% Similarity=0.129 Sum_probs=69.6
Q ss_pred cceeEEecCCCCCEEEEEEEecCC-CCcEEEEEeCCCCEEEEECCCCCEEEEe-------------cCCCCeEEEEEECC
Q psy6444 5 RQIPLTCSGHTRPVVHLAFSDITE-SGYFLISACKDGKPMLRQGDTGDWIGTF-------------EGHKGCVWGVDINK 70 (88)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~~ 70 (88)
++....+.+|.+.|.+++|+ + +++.+++++.|+.+.+|++.++.....+ .+|...|..++|+|
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s---~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 109 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIE---PVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYP 109 (408)
T ss_dssp CTTEEECCCCSSCEEEEEEC---TTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECT
T ss_pred CcceeeeeccCCcEEEEEEe---cCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEcc
Confidence 45567788899999999999 7 9999999999999999999876543333 25889999999999
Q ss_pred -CCCeEEEecCCCeEEEcC
Q psy6444 71 -DASKAASGAADFQAKALK 88 (88)
Q Consensus 71 -~~~~~~~~~~d~~i~~~~ 88 (88)
++.++++++.|+.+++||
T Consensus 110 ~~~~~l~s~~~d~~i~iwd 128 (408)
T 4a11_B 110 HDTGMFTSSSFDKTLKVWD 128 (408)
T ss_dssp TCTTCEEEEETTSEEEEEE
T ss_pred CCCcEEEEEeCCCeEEEee
Confidence 777899999999999996
No 74
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=8.5e-14 Score=78.31 Aligned_cols=80 Identities=9% Similarity=0.002 Sum_probs=67.7
Q ss_pred cceeEEecC-CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEE-EEecC-CCCeEEEEEECCCCCeEEEecCC
Q psy6444 5 RQIPLTCSG-HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWI-GTFEG-HKGCVWGVDINKDASKAASGAAD 81 (88)
Q Consensus 5 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~~~~~~~d 81 (88)
++.+..... |...+.+++|+ +++..+++++.|+.+++||+.++..+ ..+.. |...|.+++|+|++.++++++.+
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~---pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~ 235 (343)
T 3lrv_A 159 DSQYIVHSAKSDVEYSSGVLH---KDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ 235 (343)
T ss_dssp SCEEEEECCCSSCCCCEEEEC---TTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS
T ss_pred CcEEEEEecCCCCceEEEEEC---CCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC
Confidence 344444434 45579999999 79999999999999999999988876 77887 99999999999999999998854
Q ss_pred CeEEEcC
Q psy6444 82 FQAKALK 88 (88)
Q Consensus 82 ~~i~~~~ 88 (88)
.+++||
T Consensus 236 -~v~iwd 241 (343)
T 3lrv_A 236 -TVVCFD 241 (343)
T ss_dssp -BEEEEE
T ss_pred -eEEEEE
Confidence 999996
No 75
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.56 E-value=1.5e-13 Score=79.59 Aligned_cols=81 Identities=27% Similarity=0.359 Sum_probs=73.4
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEEC--CCCCeEEEecCC
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN--KDASKAASGAAD 81 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~d 81 (88)
.++.+..+.+|.+.|.+++|+ +++ .+++++.|+.+.+|++.++..+..+.+|...|.+++++ +++.++++++.|
T Consensus 151 ~~~~~~~~~~h~~~V~~l~~~---~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d 226 (464)
T 3v7d_B 151 NKKFLLQLSGHDGGVWALKYA---HGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 226 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEEC---STT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETT
T ss_pred CCcEEEEEeCCCcCEEEEEEc---CCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCC
Confidence 566788899999999999998 566 99999999999999999999999999999999999988 577889999999
Q ss_pred CeEEEcC
Q psy6444 82 FQAKALK 88 (88)
Q Consensus 82 ~~i~~~~ 88 (88)
+.+++||
T Consensus 227 ~~i~vwd 233 (464)
T 3v7d_B 227 NTLHVWK 233 (464)
T ss_dssp SCEEEEE
T ss_pred CcEEEee
Confidence 9999996
No 76
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.56 E-value=2.9e-13 Score=78.41 Aligned_cols=80 Identities=21% Similarity=0.186 Sum_probs=73.8
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
.++.+..+.+|...+.++.|+ ++++.+++++.|+.+++|++.++..+..+.+|...+..+.++ +.++++++.|+.
T Consensus 299 ~~~~~~~~~~~~~~v~~~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~ 373 (464)
T 3v7d_B 299 QMKCLYILSGHTDRIYSTIYD---HERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS 373 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEEE---TTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE
T ss_pred CCcEEEEecCCCCCEEEEEEc---CCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc
Confidence 456778889999999999999 799999999999999999999999999999999999999997 578999999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 374 v~vwd 378 (464)
T 3v7d_B 374 IRGWD 378 (464)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 77
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.56 E-value=3.9e-14 Score=88.28 Aligned_cols=72 Identities=11% Similarity=0.051 Sum_probs=65.2
Q ss_pred CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-----------------------------------------
Q psy6444 13 GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD----------------------------------------- 51 (88)
Q Consensus 13 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 51 (88)
+|...|.+++|+ ++++.+++++.|+.+++|++..+.
T Consensus 486 ~h~~~V~svafs---pdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (902)
T 2oaj_A 486 AKELAVDKISFA---AETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVR 562 (902)
T ss_dssp SSSCCEEEEEEE---TTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCS
T ss_pred CCCCceeEEEec---CCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCC
Confidence 788899999999 899999999999999999986542
Q ss_pred ----EEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 52 ----WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 52 ----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
++..+.+|.+.|++++|+|+| ++++++.|+++++||
T Consensus 563 ~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd 602 (902)
T 2oaj_A 563 QGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLID 602 (902)
T ss_dssp EEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEE
T ss_pred CccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEE
Confidence 256678899999999999999 999999999999997
No 78
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.56 E-value=1.5e-13 Score=76.97 Aligned_cols=77 Identities=21% Similarity=0.217 Sum_probs=69.3
Q ss_pred eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEE--CCCCCeEEEecCCCeEE
Q psy6444 8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDI--NKDASKAASGAADFQAK 85 (88)
Q Consensus 8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~d~~i~ 85 (88)
...+.+|...|.+++|+ ++++.+++++.|+.+.+|++.++..+. ...|...+.+++| ++++.++++++.|+.++
T Consensus 79 ~~~~~~h~~~v~~~~~~---~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 154 (368)
T 3mmy_A 79 PKAQQMHTGPVLDVCWS---DDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLK 154 (368)
T ss_dssp EEEEEECSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEE
T ss_pred EEEeccccCCEEEEEEC---cCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEE
Confidence 36788899999999999 799999999999999999998776544 5668899999999 89999999999999999
Q ss_pred EcC
Q psy6444 86 ALK 88 (88)
Q Consensus 86 ~~~ 88 (88)
+||
T Consensus 155 vwd 157 (368)
T 3mmy_A 155 FWD 157 (368)
T ss_dssp EEC
T ss_pred EEE
Confidence 997
No 79
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.55 E-value=2.9e-13 Score=75.12 Aligned_cols=79 Identities=22% Similarity=0.316 Sum_probs=73.2
Q ss_pred eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444 7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA 86 (88)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~ 86 (88)
....+.+|...+.+++|+ ++++.+++++.++.+.+|++.++..+..+..|...+..++|+|++..+++++.|+.+++
T Consensus 133 ~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~ 209 (337)
T 1gxr_A 133 IKAELTSSAPACYALAIS---PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209 (337)
T ss_dssp EEEEEECSSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eeeecccCCCceEEEEEC---CCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEE
Confidence 556778899999999999 79999999999999999999988888899999999999999999999999999999999
Q ss_pred cC
Q psy6444 87 LK 88 (88)
Q Consensus 87 ~~ 88 (88)
||
T Consensus 210 ~d 211 (337)
T 1gxr_A 210 WD 211 (337)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 80
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.4e-14 Score=88.69 Aligned_cols=78 Identities=23% Similarity=0.264 Sum_probs=66.3
Q ss_pred eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC--CCCEEEEecCCCCeEEEEEECCC--CCeEEEecCCCe
Q psy6444 8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGD--TGDWIGTFEGHKGCVWGVDINKD--ASKAASGAADFQ 83 (88)
Q Consensus 8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~d~~ 83 (88)
+..+.+|.+.|.+++|+ ++++.+++++.|+.+.+|++. +...+..+.+|.+.|.+++|+++ +.++++++.|+.
T Consensus 2 ~~~l~gH~~~V~~l~~s---~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~ 78 (753)
T 3jro_A 2 VVIANAHNELIHDAVLD---YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (753)
T ss_dssp ------CCCCEEEECCC---SSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred eeecccCcceeEEEEEC---CCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence 45678999999999999 799999999999999999987 34567788899999999999988 899999999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 79 I~vwd 83 (753)
T 3jro_A 79 VLIWK 83 (753)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 81
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.8e-13 Score=76.94 Aligned_cols=73 Identities=10% Similarity=-0.051 Sum_probs=63.8
Q ss_pred CCCCCEEEEEEEecCC--CCcEEEEEeCCCCEEEEECCCCCEEEEecC-CCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 13 GHTRPVVHLAFSDITE--SGYFLISACKDGKPMLRQGDTGDWIGTFEG-HKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 13 ~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
+|.+.|.+++|+ + +++.+++++.|+.+++||+.++..+..... +...+.+++|+|++.++++++.|+.|++||
T Consensus 123 ~~~~~v~~~~~~---~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd 198 (343)
T 3lrv_A 123 DSANEIIYMYGH---NEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN 198 (343)
T ss_dssp CCSSCEEEEECC---C---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred CCCCCEEEEEcC---CCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 577889999999 8 899999999999999999998887665543 455789999999999999999999999996
No 82
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.55 E-value=4.2e-14 Score=79.53 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=69.2
Q ss_pred ecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC--EEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 11 CSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 11 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
+..|..+|.+++|+ ++++.+++++.++.+.+|+...+. .+..+.+|...|.+++|+|++.++++++.|+.+++||
T Consensus 4 ~~~~~~~i~~~~~s---~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWN---KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEEC---TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEEC---CCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence 45688999999999 799999999999999999998776 7788889999999999999999999999999999996
No 83
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.55 E-value=1.2e-13 Score=81.84 Aligned_cols=77 Identities=10% Similarity=0.012 Sum_probs=72.1
Q ss_pred EEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecC-CCCeEEEEEECC----------CCCeEEE
Q psy6444 9 LTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEG-HKGCVWGVDINK----------DASKAAS 77 (88)
Q Consensus 9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~----------~~~~~~~ 77 (88)
..+.+|...+.+++|+ ++++.+++++.|+.+.+|++.++..+..+.+ |...|.+++|+| ++.++++
T Consensus 482 ~~~~~~~~~v~~~~~s---~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~ 558 (615)
T 1pgu_A 482 DLKTPLRAKPSYISIS---PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT 558 (615)
T ss_dssp ECSSCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEE
T ss_pred cccCCccCceEEEEEC---CCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEE
Confidence 5667899999999999 8999999999999999999999988888888 999999999999 9999999
Q ss_pred ecCCCeEEEcC
Q psy6444 78 GAADFQAKALK 88 (88)
Q Consensus 78 ~~~d~~i~~~~ 88 (88)
++.|+.+++||
T Consensus 559 ~~~dg~i~iw~ 569 (615)
T 1pgu_A 559 GSLDTNIFIYS 569 (615)
T ss_dssp EETTSCEEEEE
T ss_pred EcCCCcEEEEE
Confidence 99999999996
No 84
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.55 E-value=4.6e-14 Score=79.77 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=68.4
Q ss_pred eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC---EEEEecC-CCCeEEEEEECCCCCeEEEecCCC
Q psy6444 7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD---WIGTFEG-HKGCVWGVDINKDASKAASGAADF 82 (88)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~d~ 82 (88)
+...+.+|...|.+++|+ ++++.+++++.|+.+.+|++..+. ....+.. |...|.+++|+|++.++++++.|+
T Consensus 92 ~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~ 168 (377)
T 3dwl_C 92 QTLVLLRLNRAATFVRWS---PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR 168 (377)
T ss_dssp CEEECCCCSSCEEEEECC---TTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS
T ss_pred eeeEecccCCceEEEEEC---CCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC
Confidence 566778899999999999 799999999999999999998765 3567777 899999999999999999999999
Q ss_pred eEEEcC
Q psy6444 83 QAKALK 88 (88)
Q Consensus 83 ~i~~~~ 88 (88)
.+++||
T Consensus 169 ~i~iwd 174 (377)
T 3dwl_C 169 KAYVLS 174 (377)
T ss_dssp CEEEEE
T ss_pred EEEEEE
Confidence 999996
No 85
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.55 E-value=5.1e-13 Score=74.81 Aligned_cols=81 Identities=12% Similarity=0.031 Sum_probs=74.0
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCC--
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD-- 81 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d-- 81 (88)
+++.+..+.+|...|.+++|+ ++++.+++++.|+.+.+|++.++..+..+. +...+..++|+|++..+++++.+
T Consensus 63 ~~~~~~~~~~h~~~v~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~ 138 (369)
T 3zwl_B 63 NGERLGTLDGHTGTIWSIDVD---CFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVM 138 (369)
T ss_dssp TCCEEEEECCCSSCEEEEEEC---TTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBT
T ss_pred CchhhhhhhhcCCcEEEEEEc---CCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCcc
Confidence 567788899999999999999 799999999999999999999888887777 77889999999999999999888
Q ss_pred ---CeEEEcC
Q psy6444 82 ---FQAKALK 88 (88)
Q Consensus 82 ---~~i~~~~ 88 (88)
+.+++||
T Consensus 139 ~~~g~i~~~d 148 (369)
T 3zwl_B 139 KNPGSINIYE 148 (369)
T ss_dssp TBCCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9999986
No 86
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.54 E-value=7.4e-14 Score=80.97 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=68.3
Q ss_pred EecCCCCCEEEEEEEecCCC---CcEEEEEeCCCCEEEEECCCCCEEEE-ecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444 10 TCSGHTRPVVHLAFSDITES---GYFLISACKDGKPMLRQGDTGDWIGT-FEGHKGCVWGVDINKDASKAASGAADFQAK 85 (88)
Q Consensus 10 ~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~ 85 (88)
.+.+|...|.+++|+ ++ +..+++++.|+.+++|++.++..+.. +.+|...|.+++|+ ++.++++++.|+.|+
T Consensus 190 ~~~~h~~~v~~~~~s---p~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~ 265 (450)
T 2vdu_B 190 PILGHVSMLTDVHLI---KDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIF 265 (450)
T ss_dssp CSEECSSCEEEEEEE---ECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEE
T ss_pred eeecccCceEEEEEc---CCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEE
Confidence 667899999999999 57 88999999999999999988887776 55899999999999 999999999999999
Q ss_pred EcC
Q psy6444 86 ALK 88 (88)
Q Consensus 86 ~~~ 88 (88)
+||
T Consensus 266 vwd 268 (450)
T 2vdu_B 266 AWD 268 (450)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
No 87
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.5e-13 Score=81.64 Aligned_cols=78 Identities=13% Similarity=-0.035 Sum_probs=66.4
Q ss_pred eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-EEEEecCCCCeEEEE--EECCCC-CeEEEecCCC
Q psy6444 7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-WIGTFEGHKGCVWGV--DINKDA-SKAASGAADF 82 (88)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~--~~~~~~-~~~~~~~~d~ 82 (88)
+...+.+|...|.+++|+ ++ ..+++++.|+.|++||+.++. ....+.+|...|.++ .|++++ .++++++.|+
T Consensus 258 p~~~l~~h~~~v~sv~~s---~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~ 333 (524)
T 2j04_B 258 PSLTLSLADSLITTFDFL---SP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDG 333 (524)
T ss_dssp CSEEECCTTTCEEEEEES---SS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTS
T ss_pred ceEEEEcCCCCEEEEEec---CC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCC
Confidence 345788999999999998 44 489999999999999998653 445678899999998 568887 8899999999
Q ss_pred eEEEcC
Q psy6444 83 QAKALK 88 (88)
Q Consensus 83 ~i~~~~ 88 (88)
++++||
T Consensus 334 tvklWD 339 (524)
T 2j04_B 334 YFYIFN 339 (524)
T ss_dssp EEEEEC
T ss_pred eEEEEE
Confidence 999997
No 88
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.54 E-value=5.9e-14 Score=80.77 Aligned_cols=82 Identities=11% Similarity=0.083 Sum_probs=71.1
Q ss_pred ccceeEEecC--CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEec-CCCCeEEEEEECC----CCCeEE
Q psy6444 4 IRQIPLTCSG--HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFE-GHKGCVWGVDINK----DASKAA 76 (88)
Q Consensus 4 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~----~~~~~~ 76 (88)
.++.+..+.+ |.+.|.+++|+ +++..+++++.|+.+++||+..+..+..+. .+...|.+++|+| ++.+++
T Consensus 201 ~~~~~~~~~~~~h~~~v~~~~~s---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~ 277 (437)
T 3gre_A 201 TLERLQIIENSPRHGAVSSICID---EECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV 277 (437)
T ss_dssp TCCEEEEEECCGGGCCEEEEEEC---TTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred CCeeeEEEccCCCCCceEEEEEC---CCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEE
Confidence 4567778888 88999999999 799999999999999999999888888776 6778899996654 577899
Q ss_pred EecCCCeEEEcC
Q psy6444 77 SGAADFQAKALK 88 (88)
Q Consensus 77 ~~~~d~~i~~~~ 88 (88)
+++.|+.+++||
T Consensus 278 s~~~dg~i~iwd 289 (437)
T 3gre_A 278 GGSSKTFLTIWN 289 (437)
T ss_dssp EESTTEEEEEEE
T ss_pred EEcCCCcEEEEE
Confidence 999999999996
No 89
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.1e-13 Score=78.77 Aligned_cols=82 Identities=10% Similarity=0.084 Sum_probs=74.1
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC--------------------EEEEecCCCC--
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--------------------WIGTFEGHKG-- 61 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~-- 61 (88)
.++.+..+..|...+.+++|+ ++++.+++++.++.+.+|++.++. .+..+..+..
T Consensus 319 ~~~~~~~~~~~~~~i~~~~~s---~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (425)
T 1r5m_A 319 QNTLLALSIVDGVPIFAGRIS---QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDND 395 (425)
T ss_dssp TTEEEEEEECTTCCEEEEEEC---TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCC
T ss_pred CCcEeEecccCCccEEEEEEc---CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCC
Confidence 456777888899999999999 799999999999999999998776 7888888866
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 62 CVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 62 ~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
.|..++|+|++.++++++.|+.+++||
T Consensus 396 ~v~~~~~s~~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 396 YIFDLSWNCAGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp CEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred ceEEEEccCCCceEEEEecCceEEEEe
Confidence 999999999999999999999999996
No 90
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.54 E-value=3.5e-13 Score=85.38 Aligned_cols=82 Identities=22% Similarity=0.296 Sum_probs=75.6
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECC--CCCeEEEecCC
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK--DASKAASGAAD 81 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~d 81 (88)
+++.+..+.+|.+.|.+++|+ ++++.+++++.|+.+.+|++.++..+..+.+|...+.+++|++ ++..+++++.|
T Consensus 646 ~~~~~~~~~~h~~~v~~~~~s---~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d 722 (1249)
T 3sfz_A 646 TGEKLLDIKAHEDEVLCCAFS---SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSND 722 (1249)
T ss_dssp TCCEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETT
T ss_pred CCCEEEEeccCCCCEEEEEEe---cCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCC
Confidence 456788899999999999999 7999999999999999999999999999999999999999999 55578899999
Q ss_pred CeEEEcC
Q psy6444 82 FQAKALK 88 (88)
Q Consensus 82 ~~i~~~~ 88 (88)
+.+++||
T Consensus 723 ~~v~vwd 729 (1249)
T 3sfz_A 723 FFLKLWD 729 (1249)
T ss_dssp SCEEEEE
T ss_pred CeEEEEE
Confidence 9999996
No 91
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.54 E-value=8.9e-14 Score=86.70 Aligned_cols=79 Identities=16% Similarity=0.134 Sum_probs=68.3
Q ss_pred ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEE-----Eec-CCCCeEEEEEEC-----CCC--
Q psy6444 6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIG-----TFE-GHKGCVWGVDIN-----KDA-- 72 (88)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~i~~~~~~-----~~~-- 72 (88)
+++..+.+|.+.|.+++|+ ++| ++++++.|+.+++||+.....+. .+. +|...|++++|+ ||+
T Consensus 566 ~~~~~l~~h~~~V~svafS---pdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~ 641 (902)
T 2oaj_A 566 MPSTAVHANKGKTSAINNS---NIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYS 641 (902)
T ss_dssp EEEEEECCCSCSEEEEEEC---BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSE
T ss_pred ceeEEEEcCCCcEEEEEec---CCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCc
Confidence 3577889999999999999 799 99999999999999987665543 233 788999999999 885
Q ss_pred -CeEEEecCCCeEEEcC
Q psy6444 73 -SKAASGAADFQAKALK 88 (88)
Q Consensus 73 -~~~~~~~~d~~i~~~~ 88 (88)
.++++++.|+++++||
T Consensus 642 ~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 642 SILMVCGTDMGEVITYK 658 (902)
T ss_dssp EEEEEEEETTSEEEEEE
T ss_pred ceEEEEEecCCcEEEEE
Confidence 7999999999999996
No 92
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.53 E-value=2.2e-13 Score=76.34 Aligned_cols=72 Identities=15% Similarity=0.106 Sum_probs=66.5
Q ss_pred CCCCEEEEEEEecCCC----CcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECC-CCCeEEEecCCCeEEEcC
Q psy6444 14 HTRPVVHLAFSDITES----GYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK-DASKAASGAADFQAKALK 88 (88)
Q Consensus 14 ~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~i~~~~ 88 (88)
|...+.+++|+| + +..+++++.|+.+.+|++.++..+..+.+|...|.+++|+| ++.++++++.|+.+++||
T Consensus 68 ~~~~v~~~~~~~---~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd 144 (366)
T 3k26_A 68 ADENFYTCAWTY---DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 144 (366)
T ss_dssp TTCCEEEEEEEE---CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred CCCcEEEEEecc---CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 557899999994 5 67999999999999999999998999999999999999999 899999999999999996
No 93
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.5e-14 Score=85.93 Aligned_cols=78 Identities=10% Similarity=0.044 Sum_probs=68.3
Q ss_pred eEEecCCCC--CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444 8 PLTCSGHTR--PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK 85 (88)
Q Consensus 8 ~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~ 85 (88)
+.++.+|.. .|.+++|+ ++++.+++++.|+.+++|++..+..+..+.+|.+.|.+++|+|++..+++++.|++++
T Consensus 346 ~~~~~~~~~~~~v~~v~fs---p~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~ 422 (524)
T 2j04_B 346 TKTTVSRFRGSNLVPVVYC---PQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLI 422 (524)
T ss_dssp HCEEEEECSCCSCCCEEEE---TTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEE
T ss_pred ccccccccccCcccceEeC---CCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEE
Confidence 344555543 47889999 7899999999999999999998887788889999999999999999999999999999
Q ss_pred EcC
Q psy6444 86 ALK 88 (88)
Q Consensus 86 ~~~ 88 (88)
+||
T Consensus 423 lwd 425 (524)
T 2j04_B 423 ITN 425 (524)
T ss_dssp CCB
T ss_pred EEe
Confidence 996
No 94
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.53 E-value=5.6e-13 Score=75.84 Aligned_cols=81 Identities=17% Similarity=0.120 Sum_probs=73.9
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
.++.+..+.+|...+.++.|+ +++ .+++++.++.+.+|++.++..+..+..+...+..++|+|++.++++++.|+.
T Consensus 278 ~~~~~~~~~~~~~~i~~~~~~---~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 353 (425)
T 1r5m_A 278 NGNSQNCFYGHSQSIVSASWV---GDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ 353 (425)
T ss_dssp SBSCSEEECCCSSCEEEEEEE---TTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred CCccceEecCCCccEEEEEEC---CCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence 445677788899999999999 677 9999999999999999988888889999999999999999999999999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 354 i~i~~ 358 (425)
T 1r5m_A 354 VNVYD 358 (425)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 95
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.53 E-value=2.2e-13 Score=76.14 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=66.4
Q ss_pred EecCCCCCEEEEEEEecCCCCc-EEEEEeCCCCEEEEECCCC-------------------CEEEEecCCCCeEEEEEEC
Q psy6444 10 TCSGHTRPVVHLAFSDITESGY-FLISACKDGKPMLRQGDTG-------------------DWIGTFEGHKGCVWGVDIN 69 (88)
Q Consensus 10 ~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~i~~~~~~ 69 (88)
.+.+|...+.+++|+ ++++ .+++++.|+.+.+|++..+ ..+..+.+|...|..++|+
T Consensus 254 ~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s 330 (357)
T 3i2n_A 254 SEKAHKSTVWQVRHL---PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS 330 (357)
T ss_dssp EEECCSSCEEEEEEE---TTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC
T ss_pred ccCCCcCCEEEEEEC---CCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc
Confidence 344899999999999 7887 8999999999999998643 2466778899999999999
Q ss_pred CCCCeEE-EecCCCeEEEcC
Q psy6444 70 KDASKAA-SGAADFQAKALK 88 (88)
Q Consensus 70 ~~~~~~~-~~~~d~~i~~~~ 88 (88)
|++.+++ +++.|+.+++||
T Consensus 331 ~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 331 PDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp SSSTTEEEEEETTSEEEEEE
T ss_pred CCCCeEEEEecCCCcEEEEE
Confidence 9999998 899999999996
No 96
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.52 E-value=1.8e-13 Score=76.95 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=73.7
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
.+..+..+.+|...+.+++|+ ++++.+++++.|+.+.+|++.++..+..+..+...+..++|+|++.+++++ .|+.
T Consensus 191 ~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~ 266 (372)
T 1k8k_C 191 FGELMFESSSSCGWVHGVCFS---ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCF 266 (372)
T ss_dssp TTCEEEECCCCSSCEEEEEEC---SSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSS
T ss_pred hhhheEecCCCCCeEEEEEEC---CCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCe
Confidence 456788888999999999999 799999999999999999999899999999999999999999999888776 8999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++|+
T Consensus 267 i~i~~ 271 (372)
T 1k8k_C 267 PVLFT 271 (372)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 99985
No 97
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.52 E-value=1.7e-13 Score=76.42 Aligned_cols=77 Identities=9% Similarity=-0.026 Sum_probs=67.9
Q ss_pred EEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC---EEEEecCCCCeEEEEEECCCCC-eEEEecCCCeE
Q psy6444 9 LTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD---WIGTFEGHKGCVWGVDINKDAS-KAASGAADFQA 84 (88)
Q Consensus 9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~i 84 (88)
....+|.+.|.+++|+ ++++.+++++.|+.+.+|++..+. .......|...|.+++|+|++. ++++++.|+.+
T Consensus 5 ~~~~~h~~~v~~~~~s---~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 5 QIEQAPKDYISDIKII---PSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp ECSSCCSSCEEEEEEE---GGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred ecccCCCCcEEEEEEc---CCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence 3446799999999999 799999999999999999988766 3455667899999999999999 99999999999
Q ss_pred EEcC
Q psy6444 85 KALK 88 (88)
Q Consensus 85 ~~~~ 88 (88)
++||
T Consensus 82 ~~wd 85 (342)
T 1yfq_A 82 LKVD 85 (342)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9997
No 98
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.5e-13 Score=83.21 Aligned_cols=81 Identities=21% Similarity=0.308 Sum_probs=73.2
Q ss_pred cceeEEecCCCCCEEEEEEEecCCC--CcEEEEEeCCCCEEEEECCCCC--EEEEecCCCCeEEEEEECCC--CCeEEEe
Q psy6444 5 RQIPLTCSGHTRPVVHLAFSDITES--GYFLISACKDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKD--ASKAASG 78 (88)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~~~~~ 78 (88)
+..+..+.+|.+.|.+++|+ ++ ++.+++++.|+.+++|++.++. .+..+.+|...|.+++|+|+ +..++++
T Consensus 43 ~~~~~~l~~h~~~V~~l~~s---~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg 119 (753)
T 3jro_A 43 HKLIDTLTGHEGPVWRVDWA---HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA 119 (753)
T ss_dssp EEEEEEECCCSSCEEEEEEC---CTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred CccceeccCCcCceEEEEec---CCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEE
Confidence 45677889999999999998 56 8999999999999999998776 66778889999999999999 9999999
Q ss_pred cCCCeEEEcC
Q psy6444 79 AADFQAKALK 88 (88)
Q Consensus 79 ~~d~~i~~~~ 88 (88)
+.|+.+++||
T Consensus 120 s~dg~I~vwd 129 (753)
T 3jro_A 120 SSDGKVSVVE 129 (753)
T ss_dssp ETTSEEEEEE
T ss_pred eCCCcEEEEE
Confidence 9999999996
No 99
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.51 E-value=7.5e-13 Score=75.78 Aligned_cols=82 Identities=23% Similarity=0.118 Sum_probs=71.9
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEec--C
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGA--A 80 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~--~ 80 (88)
.+..+..+.+|.+.|.+++|+ +++..+++++.|+.+.+||+.++..+..+..|...+.+++|+|++. .+++++ .
T Consensus 206 ~~~~~~~~~~~~~~v~~~~~~---~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~ 282 (401)
T 4aez_A 206 ANHQIGTLQGHSSEVCGLAWR---SDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTM 282 (401)
T ss_dssp SSCEEEEEECCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTT
T ss_pred CcceeeEEcCCCCCeeEEEEc---CCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCC
Confidence 355677888999999999999 7999999999999999999998888888999999999999999765 445544 7
Q ss_pred CCeEEEcC
Q psy6444 81 DFQAKALK 88 (88)
Q Consensus 81 d~~i~~~~ 88 (88)
|+.+++||
T Consensus 283 d~~i~i~d 290 (401)
T 4aez_A 283 DKQIHFWN 290 (401)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEE
Confidence 99999996
No 100
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.51 E-value=4.2e-13 Score=80.42 Aligned_cols=67 Identities=9% Similarity=0.092 Sum_probs=59.3
Q ss_pred CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-------EEEEe----cCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444 17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-------WIGTF----EGHKGCVWGVDINKDASKAASGAADFQAK 85 (88)
Q Consensus 17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~d~~i~ 85 (88)
.+.+++|+ |+|+.+++++.|+.+++|++..+. .+..+ .+|...|.+++|+|++ +++++.|++++
T Consensus 131 sv~svafS---PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVr 205 (588)
T 2j04_A 131 TYHCFEWN---PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVF 205 (588)
T ss_dssp CEEEEEEC---SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEE
T ss_pred cEEEEEEc---CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEE
Confidence 49999999 799999999999999999998764 25665 6677899999999999 77888999999
Q ss_pred EcC
Q psy6444 86 ALK 88 (88)
Q Consensus 86 ~~~ 88 (88)
+||
T Consensus 206 lWd 208 (588)
T 2j04_A 206 SMT 208 (588)
T ss_dssp EEC
T ss_pred EEE
Confidence 997
No 101
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.50 E-value=1e-13 Score=79.24 Aligned_cols=82 Identities=23% Similarity=0.219 Sum_probs=68.7
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecC---CCCeEEE---------------
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEG---HKGCVWG--------------- 65 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~--------------- 65 (88)
.++.+..+.+|...|.+++|+ +++..+++++.|+.+++|++.++..+..+.. +...+..
T Consensus 170 ~~~~~~~~~~h~~~v~~~~~~---~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 246 (420)
T 3vl1_A 170 DGSNPRTLIGHRATVTDIAII---DRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEIS 246 (420)
T ss_dssp TCCCCEEEECCSSCEEEEEEE---TTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGC
T ss_pred CCcCceEEcCCCCcEEEEEEc---CCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecc
Confidence 456677889999999999999 7999999999999999999998887777764 3334444
Q ss_pred ------EEECCCCCeEEEecCCCeEEEcC
Q psy6444 66 ------VDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 66 ------~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
++|+|++.++++++.|+.+++||
T Consensus 247 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 275 (420)
T 3vl1_A 247 TSKKNNLEFGTYGKYVIAGHVSGVITVHN 275 (420)
T ss_dssp CCCCCTTCSSCTTEEEEEEETTSCEEEEE
T ss_pred cCcccceEEcCCCCEEEEEcCCCeEEEEE
Confidence 45578899999999999999996
No 102
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.50 E-value=1.5e-12 Score=74.50 Aligned_cols=80 Identities=25% Similarity=0.289 Sum_probs=71.9
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC-CCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGD-TGDWIGTFEGHKGCVWGVDINKDASKAASGAADF 82 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~ 82 (88)
.++.+..+.+|...|.+++|+ +..+++++.++.+.+|++. ....+..+.+|...|.+++|+|++.++++++.|+
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 239 (401)
T 4aez_A 165 SQTKLRTMAGHQARVGCLSWN-----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN 239 (401)
T ss_dssp TCCEEEEECCCSSCEEEEEEE-----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCeEEEEecCCCCceEEEEEC-----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 456778888999999999997 5699999999999999998 4556788889999999999999999999999999
Q ss_pred eEEEcC
Q psy6444 83 QAKALK 88 (88)
Q Consensus 83 ~i~~~~ 88 (88)
.+++||
T Consensus 240 ~v~iwd 245 (401)
T 4aez_A 240 VVQIWD 245 (401)
T ss_dssp CEEEEE
T ss_pred eEEEcc
Confidence 999996
No 103
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.50 E-value=1.6e-13 Score=78.04 Aligned_cols=85 Identities=9% Similarity=-0.039 Sum_probs=65.2
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCC---CeEEEEEECCCCCeE-----
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHK---GCVWGVDINKDASKA----- 75 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~----- 75 (88)
+++.+..+.+|...+..++|+|++.+++.+++++.|+.|++||+.+++.+..+.++. ..+..++|+|++..+
T Consensus 167 dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~ 246 (356)
T 2w18_A 167 DGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSH 246 (356)
T ss_dssp TSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-
T ss_pred CCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEecc
Confidence 456666777777777778887433367899999999999999999999999998653 356777899999876
Q ss_pred -------EEecCCCeEEEcC
Q psy6444 76 -------ASGAADFQAKALK 88 (88)
Q Consensus 76 -------~~~~~d~~i~~~~ 88 (88)
++++.|+++++||
T Consensus 247 ~~~~w~laSGs~D~tIklWd 266 (356)
T 2w18_A 247 PCAKESESLRSPVFQLIVIN 266 (356)
T ss_dssp -----------CCEEEEEEE
T ss_pred CCCcceeeccCCCcEEEEEE
Confidence 5677889999986
No 104
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.49 E-value=1.3e-12 Score=74.10 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=69.5
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCc-EEEEEeCCCCEEEEECCCCC-EEEEe---------------cCCCCeEEEE
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGY-FLISACKDGKPMLRQGDTGD-WIGTF---------------EGHKGCVWGV 66 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~---------------~~~~~~i~~~ 66 (88)
.+..+..+.+|...|.+++|+ +++. .+++++.|+.+.+|++..+. .+..+ ..|...+..+
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~---~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWS---PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEEC---SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred CcceeeeecCCCCcEEEEEEC---CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence 456677888999999999999 6776 68999999999999997654 22333 4678899999
Q ss_pred EECCCCCeEEEecCCCeEEEcC
Q psy6444 67 DINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 67 ~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
+|+|++.++++++.|+.+++||
T Consensus 252 ~~~~~~~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 252 CFTSDGLHLLTVGTDNRMRLWN 273 (408)
T ss_dssp EECTTSSEEEEEETTSCEEEEE
T ss_pred EEcCCCCEEEEecCCCeEEEEE
Confidence 9999999999999999999996
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.49 E-value=8.5e-13 Score=76.29 Aligned_cols=81 Identities=12% Similarity=0.114 Sum_probs=70.8
Q ss_pred cceeEEecCCCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCC--------------CCEEEEecCCCCeEEEEEEC
Q psy6444 5 RQIPLTCSGHTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDT--------------GDWIGTFEGHKGCVWGVDIN 69 (88)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~i~~~~~~ 69 (88)
+.++..+.+|...|.+++|+ +++ ..+++++.|+.+.+|++.. ...+..+.+|...|..++|+
T Consensus 311 ~~~~~~~~~h~~~v~~i~~s---p~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 387 (430)
T 2xyi_A 311 KLKLHSFESHKDEIFQVQWS---PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 387 (430)
T ss_dssp TSCSEEEECCSSCEEEEEEC---SSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEEC
T ss_pred CCCeEEeecCCCCEEEEEEC---CCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEEC
Confidence 45678888999999999999 566 5799999999999999875 25667788899999999999
Q ss_pred CCCC-eEEEecCCCeEEEcC
Q psy6444 70 KDAS-KAASGAADFQAKALK 88 (88)
Q Consensus 70 ~~~~-~~~~~~~d~~i~~~~ 88 (88)
|++. ++++++.|+.|++|+
T Consensus 388 p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 388 PNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp SSSTTEEEEEETTSEEEEEE
T ss_pred CCCCCEEEEEECCCCEEEeE
Confidence 9998 888999999999995
No 106
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.48 E-value=2e-12 Score=71.70 Aligned_cols=77 Identities=22% Similarity=0.213 Sum_probs=68.3
Q ss_pred eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444 8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKAL 87 (88)
Q Consensus 8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~ 87 (88)
...+..|...+.+++|+ ++++.+++++.++.+.+|++.++..+... .+...+..++|+|++.++++++.|+.+++|
T Consensus 258 ~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 258 KYQLHLHESCVLSLKFA---YCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp EEEECCCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred eEEEcCCccceeEEEEC---CCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence 44677899999999999 79999999999999999999988776443 477889999999999999999999999999
Q ss_pred C
Q psy6444 88 K 88 (88)
Q Consensus 88 ~ 88 (88)
+
T Consensus 334 ~ 334 (337)
T 1gxr_A 334 E 334 (337)
T ss_dssp E
T ss_pred E
Confidence 6
No 107
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.48 E-value=1.2e-12 Score=75.67 Aligned_cols=79 Identities=22% Similarity=0.159 Sum_probs=68.7
Q ss_pred eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC---CEEEEecCCCCeEEEEEECCCCC-eEEEecCCCe
Q psy6444 8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG---DWIGTFEGHKGCVWGVDINKDAS-KAASGAADFQ 83 (88)
Q Consensus 8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~ 83 (88)
...+.+|...|.+++|+| .++..+++++.++.+.+|++... ..+..+..|...+.+++|+|++. .+++++.|+.
T Consensus 224 ~~~~~~h~~~v~~v~~~p--~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~ 301 (430)
T 2xyi_A 224 KNIFTGHTAVVEDVAWHL--LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT 301 (430)
T ss_dssp SEEECCCSSCEEEEEECS--SCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred ceeecCCCCCEeeeEEeC--CCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCe
Confidence 456778999999999994 47789999999999999999876 45667778999999999999887 5789999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
|++||
T Consensus 302 v~vwd 306 (430)
T 2xyi_A 302 VALWD 306 (430)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 108
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.47 E-value=3.9e-13 Score=77.29 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=63.3
Q ss_pred CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-----------EEEEecCCC------------CeEEEEEECC
Q psy6444 14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-----------WIGTFEGHK------------GCVWGVDINK 70 (88)
Q Consensus 14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~------------~~i~~~~~~~ 70 (88)
+.+.|.+++|+ ++++.+++++.|+.+.+|++..+. ....+.+|. ..|..++|+|
T Consensus 27 ~~~~V~~v~~s---~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 27 EADIISTVEFN---HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp GGGSEEEEEEC---SSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccCcEEEEEEC---CCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 46789999999 799999999999999999988665 467788898 7899999999
Q ss_pred CC--CeEEEecCCCeEEEcC
Q psy6444 71 DA--SKAASGAADFQAKALK 88 (88)
Q Consensus 71 ~~--~~~~~~~~d~~i~~~~ 88 (88)
++ ..+++++.|+.+++||
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~ 123 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWK 123 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEE
T ss_pred CCCcceEEEeCCCCeEEEEe
Confidence 98 7899999999999996
No 109
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.46 E-value=3.1e-12 Score=73.69 Aligned_cols=80 Identities=13% Similarity=0.098 Sum_probs=69.0
Q ss_pred ccceeEEe--cCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444 4 IRQIPLTC--SGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD 81 (88)
Q Consensus 4 ~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d 81 (88)
+++....+ .+|...|.+++|+ ++|+.+++++.|+.+.+|++.++..+..+.+|...+.++.++ +..+++++.|
T Consensus 134 tg~~~~~~~~~~~~~~V~sv~fs---pdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d 208 (420)
T 4gga_A 134 SGDILQLLQMEQPGEYISSVAWI---KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRS 208 (420)
T ss_dssp TCCEEEEEECCSTTCCEEEEEEC---TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETT
T ss_pred CCCEEEEEEecCCCCcEEEEEEC---CCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCC
Confidence 34444444 4677889999999 899999999999999999999999999999999999888774 6789999999
Q ss_pred CeEEEcC
Q psy6444 82 FQAKALK 88 (88)
Q Consensus 82 ~~i~~~~ 88 (88)
+.+++||
T Consensus 209 ~~i~~~d 215 (420)
T 4gga_A 209 GHIHHHD 215 (420)
T ss_dssp SEEEEEE
T ss_pred CceeEee
Confidence 9999885
No 110
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.46 E-value=1.1e-12 Score=75.41 Aligned_cols=75 Identities=11% Similarity=0.102 Sum_probs=65.3
Q ss_pred EecCCCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCCE----EEEecCCCC------------eEEEEEECCCC
Q psy6444 10 TCSGHTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDTGDW----IGTFEGHKG------------CVWGVDINKDA 72 (88)
Q Consensus 10 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------------~i~~~~~~~~~ 72 (88)
.+.+|...|.+++|+ +++ ..+++++.|+.+++|++.++.. +..+..+.. .|.+++|+|++
T Consensus 221 ~~~~~~~~v~~~~~~---p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 297 (447)
T 3dw8_B 221 NMEELTEVITAAEFH---PNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG 297 (447)
T ss_dssp SGGGCCCCEEEEEEC---SSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS
T ss_pred cccccCcceEEEEEC---CCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC
Confidence 356899999999999 677 9999999999999999987775 677777765 89999999999
Q ss_pred CeEEEecCCCeEEEcC
Q psy6444 73 SKAASGAADFQAKALK 88 (88)
Q Consensus 73 ~~~~~~~~d~~i~~~~ 88 (88)
.++++++. +.+++||
T Consensus 298 ~~l~~~~~-~~v~iwd 312 (447)
T 3dw8_B 298 RYMMTRDY-LSVKVWD 312 (447)
T ss_dssp SEEEEEES-SEEEEEE
T ss_pred CEEEEeeC-CeEEEEe
Confidence 99999888 9999996
No 111
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.46 E-value=1.2e-12 Score=73.11 Aligned_cols=80 Identities=13% Similarity=-0.019 Sum_probs=64.5
Q ss_pred ceeEEecCCCCCEEEEEEEecCCCCc-EEEEEeC---CCCEEEEECCCCCEEEEe-cCCCCeEEEEEECCC---CCeEEE
Q psy6444 6 QIPLTCSGHTRPVVHLAFSDITESGY-FLISACK---DGKPMLRQGDTGDWIGTF-EGHKGCVWGVDINKD---ASKAAS 77 (88)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~---~~~~~~ 77 (88)
.....+.+|...|.+++|+ +++. ++++++. |+.+.+|++.++...... ..|...|.+++|+|+ +.++++
T Consensus 9 ~~~~~~~~h~~~v~~~~~~---p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 85 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWV---PCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLAT 85 (357)
T ss_dssp EEEEEEEECSSCEEEEEEC---TTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEE
T ss_pred HhhhhccCCCCceEEEEEc---CCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEE
Confidence 3445567799999999999 6775 5556665 899999999877754333 368889999999998 699999
Q ss_pred ecCCCeEEEcC
Q psy6444 78 GAADFQAKALK 88 (88)
Q Consensus 78 ~~~d~~i~~~~ 88 (88)
++.|+.+++||
T Consensus 86 ~~~dg~i~iwd 96 (357)
T 3i2n_A 86 GDFGGNLHIWN 96 (357)
T ss_dssp EETTSCEEEEC
T ss_pred ecCCCeEEEEe
Confidence 99999999997
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.46 E-value=8.4e-13 Score=79.15 Aligned_cols=70 Identities=11% Similarity=0.056 Sum_probs=61.1
Q ss_pred CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCC-----eEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444 13 GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKG-----CVWGVDINKDASKAASGAADFQAKAL 87 (88)
Q Consensus 13 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~d~~i~~~ 87 (88)
.|...|.+++|+ |+|+.+++++.++.+.+|+... .+..+. |.. .+.+++|+|+|+++++++.|+++++|
T Consensus 83 ~~~~~V~~vawS---PdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW 156 (588)
T 2j04_A 83 QPVCYPRVCKPS---PIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF 156 (588)
T ss_dssp SCSCCEEEEEEC---SSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred CCCCcEEEEEEC---CCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence 456789999999 7999999999999999999643 556666 554 59999999999999999999999999
Q ss_pred C
Q psy6444 88 K 88 (88)
Q Consensus 88 ~ 88 (88)
|
T Consensus 157 d 157 (588)
T 2j04_A 157 S 157 (588)
T ss_dssp E
T ss_pred E
Confidence 6
No 113
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.46 E-value=8.6e-13 Score=75.19 Aligned_cols=73 Identities=18% Similarity=0.176 Sum_probs=66.6
Q ss_pred CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC----CCEEEEecCCCCeEEEEEECCC-CCeEEEecCCCeEEEc
Q psy6444 13 GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDT----GDWIGTFEGHKGCVWGVDINKD-ASKAASGAADFQAKAL 87 (88)
Q Consensus 13 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~i~~~ 87 (88)
.|...|.+++|+ +++..+++++.|+.+.+|++.. ...+..+.+|...|.+++|+|+ +.++++++.|+.+++|
T Consensus 65 ~~~~~v~~~~~s---~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 65 QVDSKFNDLDWS---HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW 141 (416)
T ss_dssp CCSSCEEEEEEC---SSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred ecCCceEEEEEC---CCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence 478899999999 7999999999999999999986 3477888899999999999998 8899999999999999
Q ss_pred C
Q psy6444 88 K 88 (88)
Q Consensus 88 ~ 88 (88)
|
T Consensus 142 d 142 (416)
T 2pm9_A 142 D 142 (416)
T ss_dssp B
T ss_pred E
Confidence 7
No 114
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.44 E-value=3.7e-12 Score=71.00 Aligned_cols=76 Identities=8% Similarity=0.020 Sum_probs=67.8
Q ss_pred eEEecCCCCCEEEEEEEecCCCCc-EEEEEeCCCCEEEEEC-CCCCEEEEecC--CCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 8 PLTCSGHTRPVVHLAFSDITESGY-FLISACKDGKPMLRQG-DTGDWIGTFEG--HKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 8 ~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
...+.+|...|.+++|+ ++++ .+++++.++.+.+|++ ..+. ...+.+ |...|.+++|++ +..+++++.|+.
T Consensus 49 ~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~ 123 (342)
T 1yfq_A 49 LLQSLRYKHPLLCCNFI---DNTDLQIYVGTVQGEILKVDLIGSPS-FQALTNNEANLGICRICKYG-DDKLIAASWDGL 123 (342)
T ss_dssp EEEEEECSSCEEEEEEE---ESSSEEEEEEETTSCEEEECSSSSSS-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSE
T ss_pred ceeeeecCCceEEEEEC---CCCCcEEEEEcCCCeEEEEEeccCCc-eEeccccCCCCceEEEEeCC-CCEEEEEcCCCe
Confidence 55566899999999999 6899 9999999999999999 7655 477788 999999999999 999999999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 124 i~iwd 128 (342)
T 1yfq_A 124 IEVID 128 (342)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99997
No 115
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.44 E-value=7.5e-12 Score=69.08 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=62.8
Q ss_pred ccceeEEec--CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEec------------------------
Q psy6444 4 IRQIPLTCS--GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFE------------------------ 57 (88)
Q Consensus 4 ~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 57 (88)
+++.+..++ +|...|.+++|+ ++++.+++++.|+.+++|++.+++.+..+.
T Consensus 54 tg~~~~~~~~~~~~~~V~~v~~~---~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~ 130 (318)
T 4ggc_A 54 SGDILQLLQMEQPGEYISSVAWI---KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGH 130 (318)
T ss_dssp TCCEEEEEECCSTTCCEEEEEEC---TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSE
T ss_pred CCCEEEEEEecCCCCeEEEEEEC---CCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCc
Confidence 455555554 577889999999 899999999999999999998776554443
Q ss_pred -----------------CCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 58 -----------------GHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 58 -----------------~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
+|...+..+.+.+++.++++++.|+.+++||
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 178 (318)
T 4ggc_A 131 IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 178 (318)
T ss_dssp EEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEE
Confidence 3455566667777777788888888888875
No 116
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.44 E-value=6.4e-12 Score=72.59 Aligned_cols=78 Identities=24% Similarity=0.347 Sum_probs=69.1
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
.++.+..+.+|...+.++.++ ++.+++++.|+.+.+||+.++..+..+.+|...+.++++ ++..+++++.|+.
T Consensus 285 ~~~~~~~~~~~~~~v~~~~~~-----~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~ 357 (435)
T 1p22_A 285 TCEFVRTLNGHKRGIACLQYR-----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK 357 (435)
T ss_dssp TCCEEEEEECCSSCEEEEEEE-----TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred cCcEEEEEcCCCCcEEEEEeC-----CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc
Confidence 456778888999999998876 679999999999999999999989999999999999988 6788999999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 358 i~vwd 362 (435)
T 1p22_A 358 IKVWD 362 (435)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 117
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.41 E-value=9.3e-12 Score=71.92 Aligned_cols=78 Identities=18% Similarity=0.237 Sum_probs=69.6
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
+++.+..+.+|.+.|.+++| +++.+++++.|+.+.+|++.++..+..+.+|...+.+++|++ ..+++++.|+.
T Consensus 162 ~~~~~~~~~~h~~~v~~l~~-----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~ 234 (435)
T 1p22_A 162 TLECKRILTGHTGSVLCLQY-----DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRS 234 (435)
T ss_dssp SCCEEEEECCCSSCEEEEEC-----CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSC
T ss_pred CCeEEEEEcCCCCcEEEEEE-----CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCc
Confidence 45677888999999999876 478999999999999999999999999999999999999874 58899999999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 235 i~vwd 239 (435)
T 1p22_A 235 IAVWD 239 (435)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 118
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.41 E-value=2.7e-12 Score=73.07 Aligned_cols=76 Identities=13% Similarity=0.073 Sum_probs=63.4
Q ss_pred EecCCCCCEEEEEEEecCCCCcEEEEEeCCC----CEEEEECCCCC----EEEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444 10 TCSGHTRPVVHLAFSDITESGYFLISACKDG----KPMLRQGDTGD----WIGTFEGHKGCVWGVDINKDASKAASGAAD 81 (88)
Q Consensus 10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d 81 (88)
...+|...+.+++|+ +++..+++++.++ .+..|+..... ....+.+|...|.+++|+|++.++++++.|
T Consensus 214 ~~~~~~~~v~~v~fs---pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D 290 (365)
T 4h5i_A 214 TDFDKNWSLSKINFI---ADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND 290 (365)
T ss_dssp CCCCTTEEEEEEEEE---ETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT
T ss_pred ecCCCCCCEEEEEEc---CCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC
Confidence 445688889999999 6999999988776 46778876543 235677888999999999999999999999
Q ss_pred CeEEEcC
Q psy6444 82 FQAKALK 88 (88)
Q Consensus 82 ~~i~~~~ 88 (88)
++|++||
T Consensus 291 ~~V~iwd 297 (365)
T 4h5i_A 291 NSIALVK 297 (365)
T ss_dssp SCEEEEE
T ss_pred CEEEEEE
Confidence 9999997
No 119
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.39 E-value=1.9e-11 Score=70.69 Aligned_cols=78 Identities=23% Similarity=0.300 Sum_probs=65.4
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
.++.+..+.+|.+.|.++.|+ ++.+++++.|+.+.+|++.++..+..+.+|...|.++.++ +..+++++.|+.
T Consensus 148 ~~~~~~~~~~h~~~v~~~~~~-----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~ 220 (445)
T 2ovr_B 148 TGKCLRTLVGHTGGVWSSQMR-----DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDAT 220 (445)
T ss_dssp TCCEEEECCCCSSCEEEEEEE-----TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSE
T ss_pred CCcEEEEEcCCCCCEEEEEec-----CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCE
Confidence 456777888899999888886 5688899999999999998888888888888888888885 567888889999
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 221 i~~wd 225 (445)
T 2ovr_B 221 LRVWD 225 (445)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99886
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.38 E-value=2.8e-12 Score=74.41 Aligned_cols=82 Identities=15% Similarity=0.023 Sum_probs=69.4
Q ss_pred ccceeEEec--CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEE----EecCCCCeEEEEEECCC---CCe
Q psy6444 4 IRQIPLTCS--GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIG----TFEGHKGCVWGVDINKD---ASK 74 (88)
Q Consensus 4 ~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~ 74 (88)
.+..+..+. .|...+.+++|+ +++..+++++.++.+.+|++.++.... .+.+|...|.+++|+|+ +.+
T Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~s---p~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~ 212 (450)
T 2vdu_B 136 SKNVLKLRKRFCFSKRPNAISIA---EDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQF 212 (450)
T ss_dssp SSSCEEEEEEEECSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEE
T ss_pred CCceeeeeecccCCCCceEEEEc---CCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcE
Confidence 345555665 466889999999 799999999999999999987665433 66778899999999999 889
Q ss_pred EEEecCCCeEEEcC
Q psy6444 75 AASGAADFQAKALK 88 (88)
Q Consensus 75 ~~~~~~d~~i~~~~ 88 (88)
+++++.|+.|++||
T Consensus 213 l~s~~~d~~i~vwd 226 (450)
T 2vdu_B 213 IITSDRDEHIKISH 226 (450)
T ss_dssp EEEEETTSCEEEEE
T ss_pred EEEEcCCCcEEEEE
Confidence 99999999999996
No 121
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.36 E-value=3.9e-11 Score=69.38 Aligned_cols=78 Identities=26% Similarity=0.317 Sum_probs=64.6
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
.++.+..+.+|...|.++.++ ++.+++++.|+.+.+|++.++..+..+.+|...+.++.+ ++..+++++.|+.
T Consensus 188 ~~~~~~~~~~h~~~v~~~~~~-----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~ 260 (445)
T 2ovr_B 188 TGECIHTLYGHTSTVRCMHLH-----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM 260 (445)
T ss_dssp TTEEEEEECCCSSCEEEEEEE-----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSC
T ss_pred cCcEEEEECCCCCcEEEEEec-----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCE
Confidence 456677888888888888876 457888889999999998888888888888888888887 6778888888898
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
+++||
T Consensus 261 i~iwd 265 (445)
T 2ovr_B 261 VKVWD 265 (445)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88886
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.30 E-value=2.2e-11 Score=69.87 Aligned_cols=82 Identities=13% Similarity=-0.031 Sum_probs=63.3
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCCEEEE-------------------------ec
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDTGDWIGT-------------------------FE 57 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~ 57 (88)
.+.++..+.+|...+.+++|+ |++ ..+++++.|+.+++||+.++..... ..
T Consensus 175 ~~~~~~~~~~~~~~v~~v~~~---p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 175 DEGPILAGYPLSSPGISVQFR---PSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp TTEEEEEEEECSSCEEEEEEE---TTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred CCceeeeecCCCCCcEEEEEC---CCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 345666777889999999999 565 5899999999999999976543221 13
Q ss_pred CCCCeEEEEEEC-CCCCeEEEecCCCeEEEcC
Q psy6444 58 GHKGCVWGVDIN-KDASKAASGAADFQAKALK 88 (88)
Q Consensus 58 ~~~~~i~~~~~~-~~~~~~~~~~~d~~i~~~~ 88 (88)
+|...+..+.|+ +++..+++++.|+++++||
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd 283 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCKSGAWLRWN 283 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECTTSEEEEEE
T ss_pred cccccceeeeeecCCCCEEEEEeCCCCEEEEE
Confidence 456677778875 7999999999999999996
No 123
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.29 E-value=3.8e-12 Score=74.10 Aligned_cols=72 Identities=22% Similarity=0.108 Sum_probs=60.7
Q ss_pred CCCCEEEEEEEecCCCCcEEE----EEeCCCCEEEEECCCC--------C---EEEEecCCCCeEEEEEECCC-CCeEEE
Q psy6444 14 HTRPVVHLAFSDITESGYFLI----SACKDGKPMLRQGDTG--------D---WIGTFEGHKGCVWGVDINKD-ASKAAS 77 (88)
Q Consensus 14 ~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~i~~~~~~~~-~~~~~~ 77 (88)
+...|.+++|+ ++++.++ +++.|+.+++|++.+. + .+..+.+|...|..++|+|+ +.++++
T Consensus 91 ~~~~v~~l~~s---pdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las 167 (434)
T 2oit_A 91 MKFPIHHLALS---CDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAV 167 (434)
T ss_dssp CSSCEEEEEEC---TTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEE
T ss_pred CCCcccEEEEc---CCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEE
Confidence 45679999999 7999998 7888999999997543 1 24556678999999999998 788999
Q ss_pred ecCCCeEEEcC
Q psy6444 78 GAADFQAKALK 88 (88)
Q Consensus 78 ~~~d~~i~~~~ 88 (88)
++.|+++++||
T Consensus 168 ~s~Dg~v~iwD 178 (434)
T 2oit_A 168 CLADGSIAVLQ 178 (434)
T ss_dssp EETTSCEEEEE
T ss_pred EECCCeEEEEE
Confidence 99999999997
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.22 E-value=1.5e-10 Score=66.42 Aligned_cols=76 Identities=8% Similarity=-0.095 Sum_probs=66.6
Q ss_pred EecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-EecCCCeEEEcC
Q psy6444 10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGAADFQAKALK 88 (88)
Q Consensus 10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~d~~i~~~~ 88 (88)
.+.+|.+.+.+++|+ +++..+++++.++.+.+|+..++..+..+..+...+..++|+|++..++ +++.++.+++||
T Consensus 164 ~~~~~~~~v~~~~~~---~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d 240 (433)
T 3bws_A 164 KYKKKLGFVETISIP---EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVID 240 (433)
T ss_dssp HHHTTCCEEEEEEEG---GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCceeEEEEc---CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEE
Confidence 345788889999998 7899999999999999999998888888888888999999999999775 555889999986
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.19 E-value=4.4e-10 Score=65.03 Aligned_cols=80 Identities=13% Similarity=0.048 Sum_probs=64.3
Q ss_pred cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCC---CEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-EecC
Q psy6444 5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDG---KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGAA 80 (88)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~ 80 (88)
+...+.+.+|...+.+++|+ ++|+.+++++.++ .+.+|++.++... .+..+...+..++|+|++..++ +++.
T Consensus 168 g~~~~~l~~~~~~v~~~~~S---pdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~ 243 (415)
T 2hqs_A 168 GYNQFVVHRSPQPLMSPAWS---PDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSK 243 (415)
T ss_dssp SCSCEEEEEESSCEEEEEEC---TTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECT
T ss_pred CCCCEEEeCCCCcceeeEEc---CCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEec
Confidence 44566777888899999999 7999999988875 8999999877754 5666778899999999999887 6665
Q ss_pred CCe--EEEcC
Q psy6444 81 DFQ--AKALK 88 (88)
Q Consensus 81 d~~--i~~~~ 88 (88)
++. |.+||
T Consensus 244 ~g~~~i~~~d 253 (415)
T 2hqs_A 244 TGSLNLYVMD 253 (415)
T ss_dssp TSSCEEEEEE
T ss_pred CCCceEEEEE
Confidence 554 77765
No 126
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.17 E-value=8.4e-10 Score=62.57 Aligned_cols=82 Identities=11% Similarity=-0.024 Sum_probs=62.5
Q ss_pred ccceeEEec-C-CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCE--EEEecC---------------------
Q psy6444 4 IRQIPLTCS-G-HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDW--IGTFEG--------------------- 58 (88)
Q Consensus 4 ~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--------------------- 58 (88)
+++.+..+. + |...|.+++|+ ++++.+++++.|+.+++|++..... ...+..
T Consensus 227 ~~~~~~~~~~g~h~~~v~~~~~s---~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (355)
T 3vu4_A 227 DGVLVREFRRGLDRADVVDMKWS---TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVD 303 (355)
T ss_dssp TCCEEEEEECTTCCSCEEEEEEC---TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCC
T ss_pred CCcEEEEEEcCCCCCcEEEEEEC---CCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccC
Confidence 456777887 5 99999999999 7999999999999999999865421 111100
Q ss_pred CCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 59 HKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 59 ~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
.......++|++++..++.++.|+.+++|+
T Consensus 304 ~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 304 KHVRGCKIAWISESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp TTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 111124578999999999999999998874
No 127
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.15 E-value=1.9e-09 Score=61.21 Aligned_cols=80 Identities=13% Similarity=0.128 Sum_probs=64.1
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEE-EEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-EecCC
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFL-ISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGAAD 81 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~d 81 (88)
.++.+..+..| ..+.+++|+ ++++.+ ++++.++.+.+|+..+++.+..+..+. .+..++|+|++..++ ++..+
T Consensus 21 ~~~~~~~~~~~-~~~~~~~~s---~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~ 95 (391)
T 1l0q_A 21 SNKVTATIPVG-SNPMGAVIS---PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMAS 95 (391)
T ss_dssp TTEEEEEEECS-SSEEEEEEC---TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTT
T ss_pred CCeEEEEeecC-CCcceEEEC---CCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCC
Confidence 45566667766 458999999 788866 677789999999998888877777554 889999999999775 55677
Q ss_pred CeEEEcC
Q psy6444 82 FQAKALK 88 (88)
Q Consensus 82 ~~i~~~~ 88 (88)
+.+++||
T Consensus 96 ~~v~v~d 102 (391)
T 1l0q_A 96 STLSVID 102 (391)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 9999986
No 128
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.05 E-value=1.1e-08 Score=58.82 Aligned_cols=81 Identities=11% Similarity=-0.052 Sum_probs=65.0
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEE-EEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEec---
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLI-SACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGA--- 79 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--- 79 (88)
.++.+..+..|...+.+++|+ ++++.++ ++..++.+.+|++.++..+..+..+ ..+..++|+|++..+++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~ 275 (433)
T 3bws_A 200 TLAYKATVDLTGKWSKILLYD---PIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSA 275 (433)
T ss_dssp TCCEEEEEECSSSSEEEEEEE---TTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEES
T ss_pred CceEEEEEcCCCCCeeEEEEc---CCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCC
Confidence 345667777888899999999 7887775 5557899999999888777666653 5689999999999888776
Q ss_pred -----CCCeEEEcC
Q psy6444 80 -----ADFQAKALK 88 (88)
Q Consensus 80 -----~d~~i~~~~ 88 (88)
.|+.+++||
T Consensus 276 ~~~~~~dg~i~~~d 289 (433)
T 3bws_A 276 SNQESGGGRLGIYS 289 (433)
T ss_dssp CTTCSCCEEEEEEE
T ss_pred CccccCCCeEEEEE
Confidence 478899886
No 129
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.01 E-value=2.5e-08 Score=56.62 Aligned_cols=80 Identities=13% Similarity=0.143 Sum_probs=62.6
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEE-EEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeE-EEecCC
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLI-SACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKA-ASGAAD 81 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~d 81 (88)
.++.+..+..+. .+.+++|+ ++++.++ ++..++.+.+|++.++..+..+..+ ..+..++|+|++..+ ++++.+
T Consensus 63 ~~~~~~~~~~~~-~v~~~~~s---pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~ 137 (391)
T 1l0q_A 63 TNNVIATVPAGS-SPQGVAVS---PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGD 137 (391)
T ss_dssp TTEEEEEEECSS-SEEEEEEC---TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTT
T ss_pred CCeEEEEEECCC-CccceEEC---CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCC
Confidence 445566666554 88999999 7888765 5556799999999988877766654 467899999999977 688889
Q ss_pred CeEEEcC
Q psy6444 82 FQAKALK 88 (88)
Q Consensus 82 ~~i~~~~ 88 (88)
+.+++||
T Consensus 138 ~~v~~~d 144 (391)
T 1l0q_A 138 KTVSVIN 144 (391)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 9999996
No 130
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.99 E-value=8.1e-09 Score=65.41 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=65.0
Q ss_pred eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCC------
Q psy6444 8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD------ 81 (88)
Q Consensus 8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d------ 81 (88)
...+.+|...+..++|+ ++|+.+++++.++.+.+|++.++........+...+..++|+|++++++.++.+
T Consensus 371 ~~~l~~~~~~~~~~~~S---pDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~ 447 (1045)
T 1k32_A 371 AEKFEENLGNVFAMGVD---RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETD 447 (1045)
T ss_dssp EEECCCCCCSEEEEEEC---TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTC
T ss_pred ceEecCCccceeeeEEC---CCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcccccc
Confidence 34455777889999999 899999999999999999999888766666788888899999999999876553
Q ss_pred ----CeEEEcC
Q psy6444 82 ----FQAKALK 88 (88)
Q Consensus 82 ----~~i~~~~ 88 (88)
..+++||
T Consensus 448 ~~~~~~i~l~d 458 (1045)
T 1k32_A 448 GYVMQAIHVYD 458 (1045)
T ss_dssp SCCEEEEEEEE
T ss_pred CCCCCeEEEEE
Confidence 3788885
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=98.97 E-value=3.2e-08 Score=59.24 Aligned_cols=80 Identities=15% Similarity=0.069 Sum_probs=64.9
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEEC--CCCCEEEEecCCCCeEEEEEECC----CCCeEEE
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQG--DTGDWIGTFEGHKGCVWGVDINK----DASKAAS 77 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~ 77 (88)
.++.+.++..+.. +..++|+ ++|+.+++++.++.+.+||+ .++..+..+. .......++|+| +++++++
T Consensus 168 t~~~~~~i~~g~~-~~~v~~s---pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v 242 (543)
T 1nir_A 168 SKKIVKVIDTGYA-VHISRMS---ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIA 242 (543)
T ss_dssp TCCEEEEEECSTT-EEEEEEC---TTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEE
T ss_pred CceEEEEEecCcc-cceEEEC---CCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEE
Confidence 4566677764333 7889999 89999999999999999999 7777777776 445679999999 9999988
Q ss_pred ec-CCCeEEEcC
Q psy6444 78 GA-ADFQAKALK 88 (88)
Q Consensus 78 ~~-~d~~i~~~~ 88 (88)
++ .++++.+||
T Consensus 243 ~~~~~~~v~v~D 254 (543)
T 1nir_A 243 GAYWPPQFAIMD 254 (543)
T ss_dssp EEEESSEEEEEE
T ss_pred EEccCCeEEEEe
Confidence 77 588999986
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=98.88 E-value=1.3e-07 Score=54.74 Aligned_cols=76 Identities=16% Similarity=0.041 Sum_probs=57.8
Q ss_pred EEecCCCCCEEEEEEEecCCCCcEEE-EEeCCCC--EEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecC-CC--
Q psy6444 9 LTCSGHTRPVVHLAFSDITESGYFLI-SACKDGK--PMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAA-DF-- 82 (88)
Q Consensus 9 ~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-d~-- 82 (88)
..+..|...+.+++|+ ++|+.++ +++.++. +.+|++.++.. ..+..+...+..++|+|++..++.++. ++
T Consensus 216 ~~l~~~~~~~~~~~~s---pdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 216 RQVASFPRHNGAPAFS---PDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp EEEECCSSCEEEEEEC---TTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred EEeecCCCcccCEEEc---CCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCc
Confidence 4566788889999999 7998777 6666654 88889887664 566778888999999999998887664 45
Q ss_pred eEEEcC
Q psy6444 83 QAKALK 88 (88)
Q Consensus 83 ~i~~~~ 88 (88)
.+.+||
T Consensus 292 ~i~~~d 297 (415)
T 2hqs_A 292 QVYKVN 297 (415)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 455543
No 133
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=98.87 E-value=4.4e-09 Score=62.78 Aligned_cols=78 Identities=6% Similarity=-0.131 Sum_probs=63.1
Q ss_pred eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCC--CEEEEECCCCCEEEEecCCCCeEEEEE--------ECCCCCeEE
Q psy6444 7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDG--KPMLRQGDTGDWIGTFEGHKGCVWGVD--------INKDASKAA 76 (88)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~ 76 (88)
..+.+..|.+.+..++|+ ++|+.+++...++ .+.+|++..+... .+..+...+..+. |+|++..++
T Consensus 186 ~~~~l~~~~~~~~~~~~S---pDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~ 261 (582)
T 3o4h_A 186 GLRVFDSGEGSFSSASIS---PGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAV 261 (582)
T ss_dssp CCEEECCSSCEEEEEEEC---TTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEE
T ss_pred CceEeecCCCccccceEC---CCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEE
Confidence 345677888889999999 8999999888888 7889999877766 6666666555556 999998888
Q ss_pred EecCCCeEEEcC
Q psy6444 77 SGAADFQAKALK 88 (88)
Q Consensus 77 ~~~~d~~i~~~~ 88 (88)
+++.++.+++|+
T Consensus 262 ~~~~~g~~~l~~ 273 (582)
T 3o4h_A 262 VARREGRSAVFI 273 (582)
T ss_dssp EEEETTEEEEEE
T ss_pred EEEcCCcEEEEE
Confidence 899999999884
No 134
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=98.83 E-value=5.1e-08 Score=52.94 Aligned_cols=72 Identities=10% Similarity=0.065 Sum_probs=55.5
Q ss_pred eeEEecCCCCCEEEEEEEecCCCCcEEEEEe-CCCCEEEEECC-CCCEEEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444 7 IPLTCSGHTRPVVHLAFSDITESGYFLISAC-KDGKPMLRQGD-TGDWIGTFEGHKGCVWGVDINKDASKAASGAAD 81 (88)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d 81 (88)
....+..+...+..+.|+ ++++.++.++ .++.+.+|++. .+..+..+..+...+..+.|+|++.+++.++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~s---~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 237 (297)
T 2ojh_A 164 VETRLTHGEGRNDGPDYS---PDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYD 237 (297)
T ss_dssp CEEECCCSSSCEEEEEEC---TTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEE
T ss_pred cceEcccCCCccccceEC---CCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcC
Confidence 345566677889999999 7898777655 58889999875 455567777777888899999999988876654
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=98.78 E-value=4.4e-08 Score=53.19 Aligned_cols=76 Identities=12% Similarity=-0.047 Sum_probs=57.7
Q ss_pred eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC-CCEEEEecCC-CCeEEEEEECCCCCeEEEec--CCCe
Q psy6444 8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDT-GDWIGTFEGH-KGCVWGVDINKDASKAASGA--ADFQ 83 (88)
Q Consensus 8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~--~d~~ 83 (88)
...+..|...+.+++|+ ++++.++++. ++.+.+|++.. +........+ ...+..++|+|++.+++.++ .++.
T Consensus 34 ~~~~~~~~~~v~~~~~s---pdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 109 (297)
T 2ojh_A 34 MRVVWQTPELFEAPNWS---PDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGK 109 (297)
T ss_dssp EEEEEEESSCCEEEEEC---TTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSS
T ss_pred eeeeccCCcceEeeEEC---CCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCc
Confidence 33555678889999999 7999988876 67899999987 7665555554 36678899999999998877 3344
Q ss_pred EEEc
Q psy6444 84 AKAL 87 (88)
Q Consensus 84 i~~~ 87 (88)
..+|
T Consensus 110 ~~l~ 113 (297)
T 2ojh_A 110 SAIY 113 (297)
T ss_dssp CEEE
T ss_pred ceEE
Confidence 4444
No 136
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.73 E-value=5.8e-08 Score=55.06 Aligned_cols=83 Identities=14% Similarity=0.017 Sum_probs=61.3
Q ss_pred CccceeEEecCCCCCEEE-----EEEEecCCCCcEEEEEeC-CCC--EEEEECCCCCEEEEecCCCCeEEEEEECCCCCe
Q psy6444 3 SIRQIPLTCSGHTRPVVH-----LAFSDITESGYFLISACK-DGK--PMLRQGDTGDWIGTFEGHKGCVWGVDINKDASK 74 (88)
Q Consensus 3 ~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 74 (88)
..+..+..+..|...... ++|+ ++|+.++..+. ++. +.+|+...+.......++...+....|+|++..
T Consensus 18 ~~g~~~~~lt~~~~~~~~~~~~~~~~S---pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~ 94 (388)
T 3pe7_A 18 STGAQVTRLTPPDVTCHRNYFYQKCFT---RDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDA 94 (388)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBC---TTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSE
T ss_pred CCCcceEEecCCcccccchhhcCccCC---CCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCE
Confidence 456677788888766665 7899 89998888777 664 777788777665555555444445689999999
Q ss_pred EEEecCCCeEEEcC
Q psy6444 75 AASGAADFQAKALK 88 (88)
Q Consensus 75 ~~~~~~d~~i~~~~ 88 (88)
++....+..+.+||
T Consensus 95 l~~~~~~~~l~~~d 108 (388)
T 3pe7_A 95 LFYVKDGRNLMRVD 108 (388)
T ss_dssp EEEEETTTEEEEEE
T ss_pred EEEEeCCCeEEEEE
Confidence 99888888888775
No 137
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=98.71 E-value=1e-07 Score=57.16 Aligned_cols=81 Identities=7% Similarity=-0.091 Sum_probs=65.4
Q ss_pred cceeEEecCCCCCEEEEEEEecCCCCcEEEEEe-------CCCCEEEEECCCCCEE-EEe--------cCCCCeEEEEEE
Q psy6444 5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISAC-------KDGKPMLRQGDTGDWI-GTF--------EGHKGCVWGVDI 68 (88)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~--------~~~~~~i~~~~~ 68 (88)
.+.++++.+|.+.+..+.++ ++++.+++.. .+..|.+||+.+.... ..+ ..+...+..+.|
T Consensus 410 ~~~v~~l~~~g~~~~~v~~~---pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 486 (543)
T 1nir_A 410 WKKVAELQGQGGGSLFIKTH---PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 486 (543)
T ss_dssp TSEEEEEECSCSCCCCEECC---TTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEE
T ss_pred CeEEEEEEcCCCCceEEEcC---CCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccC
Confidence 67788999988888889999 7999999887 2679999999987755 333 345788999999
Q ss_pred CCCCCeEEEe-----cCCCeEEEcC
Q psy6444 69 NKDASKAASG-----AADFQAKALK 88 (88)
Q Consensus 69 ~~~~~~~~~~-----~~d~~i~~~~ 88 (88)
+++|..++.+ +.++.|.+||
T Consensus 487 ~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 487 NKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp CSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCCCCEEEEEeecCCCCCCeEEEEE
Confidence 9999988754 2468999986
No 138
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=98.71 E-value=1.3e-07 Score=56.49 Aligned_cols=66 Identities=9% Similarity=0.027 Sum_probs=54.3
Q ss_pred EEEEEEecCCCCcEEEEEeCC----CCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC--eEEEcC
Q psy6444 19 VHLAFSDITESGYFLISACKD----GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF--QAKALK 88 (88)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~--~i~~~~ 88 (88)
..++|+ ++|+.+++++.+ ..+.+|++.++.. ..+..+...+..++|+|||+.++++..++ .|.+||
T Consensus 153 ~~~~~s---pDG~~la~~~~~~~~~~~i~~~d~~~g~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d 224 (582)
T 3o4h_A 153 FGFVSD---IRGDLIAGLGFFGGGRVSLFTSNLSSGGL-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVD 224 (582)
T ss_dssp CEEEEE---EETTEEEEEEEEETTEEEEEEEETTTCCC-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEEC
T ss_pred ceEEEC---CCCCEEEEEEEcCCCCeEEEEEcCCCCCc-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEc
Confidence 678899 699999977766 6788999876664 46677888899999999999999777777 788876
No 139
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.66 E-value=5e-07 Score=50.08 Aligned_cols=69 Identities=13% Similarity=-0.064 Sum_probs=55.2
Q ss_pred CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
+...+..++|+ ++++.++.+ ++.+.+|+..+++.+..+... ..+..++|+|++.+++.++.++.+.+||
T Consensus 239 ~~~~~~~~~~s---~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 239 MDVFYFSTAVN---PAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp CSSCEEEEEEC---TTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred CCCceeeEEEC---CCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 44456678999 799888877 688999999887776666533 4567889999999888888899999986
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=98.65 E-value=6.1e-07 Score=49.89 Aligned_cols=81 Identities=10% Similarity=-0.030 Sum_probs=57.5
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeC-CCCEEEEECCCCCE-EEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACK-DGKPMLRQGDTGDW-IGTFEGHKGCVWGVDINKDASKAASGAAD 81 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~d 81 (88)
.++.+..+..+.... .++|+ ++++.++.++. ++.+.+|+..++.. ...+..+......++|+|++.++++...+
T Consensus 29 ~~~~~~~~~~~~~~~-~~~~s---~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 104 (331)
T 3u4y_A 29 TLEILNQITLGYDFV-DTAIT---SDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGL 104 (331)
T ss_dssp TCCEEEEEECCCCEE-EEEEC---SSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCS
T ss_pred ccceeeeEEccCCcc-eEEEc---CCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCC
Confidence 345555555555556 89999 78986665555 78899999988776 55565555544448999999988855544
Q ss_pred -C--eEEEcC
Q psy6444 82 -F--QAKALK 88 (88)
Q Consensus 82 -~--~i~~~~ 88 (88)
+ .+.+||
T Consensus 105 ~~~~~i~v~d 114 (331)
T 3u4y_A 105 NHPFNMQSYS 114 (331)
T ss_dssp SSSCEEEEEE
T ss_pred CCcccEEEEE
Confidence 3 898885
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.65 E-value=3.3e-07 Score=58.28 Aligned_cols=80 Identities=5% Similarity=-0.048 Sum_probs=62.1
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCC----------CEEEEECCCCCEEEEecCCCCeEEEEEECCCCC
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDG----------KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS 73 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 73 (88)
.++....+.+|.+.+..++|+ ++|++++.++.++ .+.+|++..+. +..+..+...+..+.|+|++.
T Consensus 409 tg~~~~~~~~~~~~v~~~~~S---pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~ 484 (1045)
T 1k32_A 409 TGKPTVIERSREAMITDFTIS---DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK 484 (1045)
T ss_dssp TCCEEEEEECSSSCCCCEEEC---TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC
T ss_pred CCceEEeccCCCCCccceEEC---CCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCC
Confidence 344555555788888999999 8999888776643 79999998766 677777888888999999999
Q ss_pred eEEEecCCCeEEEc
Q psy6444 74 KAASGAADFQAKAL 87 (88)
Q Consensus 74 ~~~~~~~d~~i~~~ 87 (88)
.++..+.++..+.|
T Consensus 485 ~l~~~s~~~~~~~~ 498 (1045)
T 1k32_A 485 NLYYLSYRSLDPSP 498 (1045)
T ss_dssp EEEEEESCCCCCEE
T ss_pred EEEEEecccCCcCc
Confidence 98877766555544
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=98.64 E-value=1.8e-07 Score=57.14 Aligned_cols=70 Identities=7% Similarity=-0.087 Sum_probs=55.4
Q ss_pred CCCEEEEEEEecCCCCcEEEEEeC-CC-----CEEEEECCCCCEEEEecCCC------------------------CeEE
Q psy6444 15 TRPVVHLAFSDITESGYFLISACK-DG-----KPMLRQGDTGDWIGTFEGHK------------------------GCVW 64 (88)
Q Consensus 15 ~~~v~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~------------------------~~i~ 64 (88)
...+..++|+ ++|+.+++++. ++ .+.+|++.++.....+..+. ..+.
T Consensus 36 ~~~~~~~~~S---pdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVA---PDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEEC---TTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEe---cCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 3468899999 89999999888 77 89999998887655554432 2367
Q ss_pred EEEECCCCCeEEEecCCCeEEEcC
Q psy6444 65 GVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 65 ~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
.++|+|++++++.++. +.+.+||
T Consensus 113 ~~~~SpDg~~l~~~~~-~~i~~~d 135 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG-GELYLYD 135 (741)
T ss_dssp CCEECTTSSEEEEEET-TEEEEEE
T ss_pred eeEECCCCCEEEEEeC-CcEEEEE
Confidence 8899999999987765 8888885
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=98.64 E-value=9.2e-07 Score=49.40 Aligned_cols=68 Identities=9% Similarity=0.068 Sum_probs=54.5
Q ss_pred EEEEEEEecCCCCcEEEEEe--CCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 18 VVHLAFSDITESGYFLISAC--KDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 18 v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
+..+.|+ ++++.++.+. .++.+.+||..++..+..+..+...+..+.|+|++..++.+..++.+.+||
T Consensus 143 ~~~~~~s---~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d 212 (353)
T 3vgz_A 143 PRELVAD---DATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITID 212 (353)
T ss_dssp EEEEEEE---TTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEE
T ss_pred CceEEEC---CCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEE
Confidence 6788999 7888766655 467899999988887777764555577889999999888888889888875
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=98.64 E-value=1e-06 Score=49.23 Aligned_cols=81 Identities=9% Similarity=0.083 Sum_probs=60.6
Q ss_pred cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecC----CCCeEEEEEECCCCCeEEEec-
Q psy6444 5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEG----HKGCVWGVDINKDASKAASGA- 79 (88)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~- 79 (88)
++.+..+..+...+..+.|+ ++++.++.+..++.+.+||..++..+..+.. +...+..++|+|++..++.++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~s---~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 174 IKLKTAIQNTGKMSTGLALD---SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS 250 (353)
T ss_dssp TEEEEEECCCCTTCCCCEEE---TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred CceEEEecCCCCccceEEEC---CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence 44555555444556778899 7999999998899999999988877666553 445677899999999766544
Q ss_pred CCCeEEEcC
Q psy6444 80 ADFQAKALK 88 (88)
Q Consensus 80 ~d~~i~~~~ 88 (88)
.++.+.+||
T Consensus 251 ~~~~v~~~d 259 (353)
T 3vgz_A 251 KAAEVLVVD 259 (353)
T ss_dssp SSSEEEEEE
T ss_pred CCCEEEEEE
Confidence 558888875
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=98.58 E-value=1.3e-07 Score=57.54 Aligned_cols=80 Identities=9% Similarity=-0.029 Sum_probs=58.1
Q ss_pred ccceeEEecCCCC---CEEEEEEEecCCCCcEEEEEeCC---------CCEEEEECCCCCEEEEe---cCCCCeEEEEEE
Q psy6444 4 IRQIPLTCSGHTR---PVVHLAFSDITESGYFLISACKD---------GKPMLRQGDTGDWIGTF---EGHKGCVWGVDI 68 (88)
Q Consensus 4 ~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~ 68 (88)
.++....+..|.. .+..++|+ ++|+.+++++.+ +.+.+|++.++.. ..+ ..+...+..++|
T Consensus 46 ~g~~~~~~~~~~~~~~~v~~~~~S---pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~ 121 (723)
T 1xfd_A 46 TNTSTVLIEGKKIESLRAIRYEIS---PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGW 121 (723)
T ss_dssp GCCCEEEECTTTTTTTTCSEEEEC---TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCB
T ss_pred CCcEEEEeccccccccccceEEEC---CCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEE
Confidence 3445555666654 38899999 899999988764 5677999987764 233 234445778899
Q ss_pred CCCCCeEEEecCCCeEEEcC
Q psy6444 69 NKDASKAASGAADFQAKALK 88 (88)
Q Consensus 69 ~~~~~~~~~~~~d~~i~~~~ 88 (88)
+|+|+.++.++. +.+++||
T Consensus 122 SPdG~~la~~~~-~~i~~~~ 140 (723)
T 1xfd_A 122 GPKGQQLIFIFE-NNIYYCA 140 (723)
T ss_dssp CSSTTCEEEEET-TEEEEES
T ss_pred CCCCCEEEEEEC-CeEEEEE
Confidence 999999987765 6788875
No 146
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=98.57 E-value=3.5e-07 Score=55.88 Aligned_cols=66 Identities=9% Similarity=0.034 Sum_probs=53.5
Q ss_pred EEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC--EEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 18 VVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 18 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
+..++|+ ++|+.++.++. +.+.+|++..+. .+..+..+...+..++|+|++++++.++ ++.|.+||
T Consensus 111 v~~~~~S---pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d 178 (741)
T 2ecf_A 111 IVDYQWS---PDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVID 178 (741)
T ss_dssp SCCCEEC---TTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred cceeEEC---CCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEe
Confidence 6788999 89999998886 889999998762 3455666778899999999999988765 45788875
No 147
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=98.52 E-value=1.4e-06 Score=48.44 Aligned_cols=71 Identities=7% Similarity=0.023 Sum_probs=53.0
Q ss_pred CCCCEEEEEEEecCCCCcEEEEEeCC-CCEEEEECC--CCC--EEEEecCCCCeEEEEEECCCCCeEEEec-CCCeEEEc
Q psy6444 14 HTRPVVHLAFSDITESGYFLISACKD-GKPMLRQGD--TGD--WIGTFEGHKGCVWGVDINKDASKAASGA-ADFQAKAL 87 (88)
Q Consensus 14 ~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~i~~~ 87 (88)
+...+..++|+ ++++.++.++.+ +.+.+|++. .+. .+..+.... .+..++|+|++.+++.++ .++.+.+|
T Consensus 36 ~~~~~~~~~~s---pdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~ 111 (343)
T 1ri6_A 36 VPGQVQPMVVS---PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVT 111 (343)
T ss_dssp CSSCCCCEEEC---TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEEC---CCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEE
Confidence 55677789999 799988887776 899999987 444 333444333 678899999999776554 58889988
Q ss_pred C
Q psy6444 88 K 88 (88)
Q Consensus 88 ~ 88 (88)
|
T Consensus 112 d 112 (343)
T 1ri6_A 112 R 112 (343)
T ss_dssp E
T ss_pred E
Confidence 5
No 148
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.52 E-value=7.1e-06 Score=45.21 Aligned_cols=79 Identities=8% Similarity=-0.052 Sum_probs=61.9
Q ss_pred cceeEEecCCCCCEEEEEEEecCCCCc-EEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 5 RQIPLTCSGHTRPVVHLAFSDITESGY-FLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
+..+..+..+......+.|+ ++++ .+++...++.+..|+...+ ...+......+..+++++++.++++...++.
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d---~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~ 91 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYV---PARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRR 91 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEE---GGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTE
T ss_pred CCcEEEEecCCccccCCeEe---CCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCe
Confidence 34455666666778899999 7887 7778888889999998766 5666666777899999999998887776777
Q ss_pred EEEcC
Q psy6444 84 AKALK 88 (88)
Q Consensus 84 i~~~~ 88 (88)
|.+||
T Consensus 92 i~~~d 96 (296)
T 3e5z_A 92 LERQR 96 (296)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 87775
No 149
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.51 E-value=1e-05 Score=45.11 Aligned_cols=79 Identities=19% Similarity=0.119 Sum_probs=58.8
Q ss_pred eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCC----C
Q psy6444 7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD----F 82 (88)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d----~ 82 (88)
....+..+...+..++|+ ++++.+++...++.+.+|+...+............+..+++++++.++++...+ +
T Consensus 36 ~~~~~~~~~~~~~~~~~~---~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFD---RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTG 112 (333)
T ss_dssp EEEEEESSCCCEEEEEEC---TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred eeEEEeccCccccCcEEC---CCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCc
Confidence 344555666677899999 789887788888899999987766544333455778999999999988776555 5
Q ss_pred eEEEcC
Q psy6444 83 QAKALK 88 (88)
Q Consensus 83 ~i~~~~ 88 (88)
.|.+||
T Consensus 113 ~i~~~d 118 (333)
T 2dg1_A 113 GIFAAT 118 (333)
T ss_dssp EEEEEC
T ss_pred eEEEEe
Confidence 677664
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.51 E-value=2.3e-06 Score=47.66 Aligned_cols=67 Identities=9% Similarity=-0.080 Sum_probs=53.3
Q ss_pred CCEEEEEEEecCC-CCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 16 RPVVHLAFSDITE-SGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 16 ~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
..+..+.++ + +++.++.+ ++.+.+|+..+++.+..+... ..+..++|++++.+++.++.++.+.+||
T Consensus 255 ~~~~~~~~s---p~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d 322 (349)
T 1jmx_B 255 ELYFTGLRS---PKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFN 322 (349)
T ss_dssp SCEEEEEEC---SSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred CcceeeEec---CCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEe
Confidence 456778888 7 99888877 778999999888766666532 3467889999998888778889999986
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=98.46 E-value=3.1e-06 Score=47.50 Aligned_cols=74 Identities=15% Similarity=0.127 Sum_probs=51.8
Q ss_pred cCCCCCEEEEEEEecCCCCcEEEEEe-CCCCEEEEECCC-CC--EEEEecC---------CCCeEEEEEECCCCCeEEEe
Q psy6444 12 SGHTRPVVHLAFSDITESGYFLISAC-KDGKPMLRQGDT-GD--WIGTFEG---------HKGCVWGVDINKDASKAASG 78 (88)
Q Consensus 12 ~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~--~~~~~~~---------~~~~i~~~~~~~~~~~~~~~ 78 (88)
..+...+..++|+ ++|+.++.++ .++.+.+|++.. +. .+..+.. ....+..++|+|++..+++.
T Consensus 82 ~~~~~~p~~~a~s---pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~ 158 (347)
T 3hfq_A 82 VAPGTPPAYVAVD---EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVID 158 (347)
T ss_dssp EEESCCCSEEEEE---TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEE
T ss_pred ecCCCCCEEEEEC---CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEe
Confidence 3355567788999 7999888777 678899999853 22 2232221 11247789999999966666
Q ss_pred cCCCeEEEcC
Q psy6444 79 AADFQAKALK 88 (88)
Q Consensus 79 ~~d~~i~~~~ 88 (88)
..++.+.+|+
T Consensus 159 ~~~~~v~~~~ 168 (347)
T 3hfq_A 159 LGSDKVYVYN 168 (347)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCEEEEEE
Confidence 7788898885
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=98.42 E-value=4.3e-06 Score=46.91 Aligned_cols=68 Identities=12% Similarity=0.052 Sum_probs=50.5
Q ss_pred CEEEEEEEecCCCCcEE-EEEeCCCCEEEEECCCC---CEEEEecCCCCeEEEEEECCCCCeEEEec-CCCeEEEc
Q psy6444 17 PVVHLAFSDITESGYFL-ISACKDGKPMLRQGDTG---DWIGTFEGHKGCVWGVDINKDASKAASGA-ADFQAKAL 87 (88)
Q Consensus 17 ~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~i~~~ 87 (88)
.+..++|+ ++|+.+ ++...++.+.+|++... ..+..+..+...+..++|+|++++++.++ .++.+.+|
T Consensus 241 ~~~~i~~s---pdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 241 GAAAIRLS---HDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp EEEEEEEC---TTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred cceeEEEC---CCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 36778999 799876 45556788999998622 34455555556678899999999887665 45888888
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=98.41 E-value=4.7e-07 Score=55.13 Aligned_cols=67 Identities=13% Similarity=-0.002 Sum_probs=49.0
Q ss_pred EEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC-----CCEEEEecCCCCe--------------EEEEEEC
Q psy6444 9 LTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDT-----GDWIGTFEGHKGC--------------VWGVDIN 69 (88)
Q Consensus 9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--------------i~~~~~~ 69 (88)
..+..+...+..++|+ ++|+.++.. .++.+.+|++.. +............ +..+.|+
T Consensus 114 ~~l~~~~~~~~~~~~S---pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S 189 (706)
T 2z3z_A 114 TYLFDTNEETASLDFS---PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWS 189 (706)
T ss_dssp EEEECCTTCCTTCEEC---TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEEC
T ss_pred EEccCCcccccCCcCC---CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEEC
Confidence 3445566677888999 799998885 578999999987 6654433333222 4778999
Q ss_pred CCCCeEEEec
Q psy6444 70 KDASKAASGA 79 (88)
Q Consensus 70 ~~~~~~~~~~ 79 (88)
|++++++.++
T Consensus 190 pDg~~la~~~ 199 (706)
T 2z3z_A 190 PKGSCLAFYR 199 (706)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9999998776
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=98.41 E-value=8.8e-06 Score=45.92 Aligned_cols=71 Identities=15% Similarity=0.084 Sum_probs=50.5
Q ss_pred CCCEEEEEEEecCCCCcEEEEEe-CCCCEEEEECCCCCE--EEEe---cCCCCeEEEEEECCCCCeEEEecC--CCeEEE
Q psy6444 15 TRPVVHLAFSDITESGYFLISAC-KDGKPMLRQGDTGDW--IGTF---EGHKGCVWGVDINKDASKAASGAA--DFQAKA 86 (88)
Q Consensus 15 ~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~---~~~~~~i~~~~~~~~~~~~~~~~~--d~~i~~ 86 (88)
......++|+ ++|+.++... .++.+.+|++..+.. +..+ ..+......++|+|++++++.+.. ++.+.+
T Consensus 210 ~~~~~~~~~s---pdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v 286 (361)
T 3scy_A 210 GSGPRHLIFN---SDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAI 286 (361)
T ss_dssp TCCEEEEEEC---TTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEE
T ss_pred CCCCeEEEEc---CCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEE
Confidence 3456789999 7998777666 578899999875543 2222 223345678999999998865554 578888
Q ss_pred cC
Q psy6444 87 LK 88 (88)
Q Consensus 87 ~~ 88 (88)
|+
T Consensus 287 ~~ 288 (361)
T 3scy_A 287 FK 288 (361)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 155
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=98.41 E-value=6.2e-06 Score=45.84 Aligned_cols=77 Identities=8% Similarity=0.037 Sum_probs=53.9
Q ss_pred eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCC---CEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-EecCCCe
Q psy6444 8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDG---KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGAADFQ 83 (88)
Q Consensus 8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~d~~ 83 (88)
...+..+..+..+++|+ ++++.++....++ .+.+|+...+..+..+... .....++|+|++++++ +...++.
T Consensus 76 ~~~~~~~~~~~~~~~~s---~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~ 151 (331)
T 3u4y_A 76 VVAIQEGQSSMADVDIT---PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSAN 151 (331)
T ss_dssp EEEEEECSSCCCCEEEC---TTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTT
T ss_pred EEecccCCCCccceEEC---CCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCc
Confidence 44455555555448899 7999888554442 8999999888777666543 4458899999998555 4455566
Q ss_pred -EEEcC
Q psy6444 84 -AKALK 88 (88)
Q Consensus 84 -i~~~~ 88 (88)
+.+|+
T Consensus 152 ~i~~~~ 157 (331)
T 3u4y_A 152 TVRRFK 157 (331)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 88764
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=98.40 E-value=2.9e-07 Score=56.17 Aligned_cols=64 Identities=9% Similarity=0.015 Sum_probs=50.2
Q ss_pred EEEEEEEecCCCCcEEEEEeC---------CCCEEEEECCCCCEE--EEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444 18 VVHLAFSDITESGYFLISACK---------DGKPMLRQGDTGDWI--GTFEGHKGCVWGVDINKDASKAASGAADFQAKA 86 (88)
Q Consensus 18 v~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~ 86 (88)
+..++|+ ++|+.++.++. ++.+.+|++.++..+ ..+ ...+..++|+|+|+.++.+. ++.|++
T Consensus 62 ~~~~~~S---pDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~ 134 (719)
T 1z68_A 62 ASNYGLS---PDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYL 134 (719)
T ss_dssp CSEEEEC---TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEE
T ss_pred eeeEEEC---CCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEE
Confidence 7789999 89999988776 678999999876542 222 24577789999999998764 678988
Q ss_pred cC
Q psy6444 87 LK 88 (88)
Q Consensus 87 ~~ 88 (88)
||
T Consensus 135 ~~ 136 (719)
T 1z68_A 135 KQ 136 (719)
T ss_dssp ES
T ss_pred Ee
Confidence 86
No 157
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=98.39 E-value=3.5e-06 Score=46.79 Aligned_cols=67 Identities=6% Similarity=0.008 Sum_probs=49.0
Q ss_pred CEEEEEEEecCCCCcEEE-EEeCCCCEEEEECC--CC--CEEEEecCCCCeEEEEEECCCCCeEEEec-CCCeEEEc
Q psy6444 17 PVVHLAFSDITESGYFLI-SACKDGKPMLRQGD--TG--DWIGTFEGHKGCVWGVDINKDASKAASGA-ADFQAKAL 87 (88)
Q Consensus 17 ~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~i~~~ 87 (88)
.+..++|+ ++++.++ +...++.+.+|++. .+ ..+..+..+.. +..++|+|++..++.++ .++.+.+|
T Consensus 232 ~~~~i~~s---~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~ 304 (343)
T 1ri6_A 232 WAADIHIT---PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVY 304 (343)
T ss_dssp CEEEEEEC---TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred CccceEEC---CCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEE
Confidence 45678999 7887766 55578899999987 22 23444444433 77899999999877666 67899988
No 158
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=98.37 E-value=3.5e-06 Score=51.36 Aligned_cols=68 Identities=10% Similarity=-0.048 Sum_probs=50.7
Q ss_pred EEEEEEEecCCCCcEEEEEe---------------------------------CCCCEEEEECCCCCEEEEec--CCCCe
Q psy6444 18 VVHLAFSDITESGYFLISAC---------------------------------KDGKPMLRQGDTGDWIGTFE--GHKGC 62 (88)
Q Consensus 18 v~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~--~~~~~ 62 (88)
+..+.|+ ++|+.++.++ .+..+.+|++.++....... .+...
T Consensus 183 ~~~~~~S---pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 259 (706)
T 2z3z_A 183 EKGTFWS---PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF 259 (706)
T ss_dssp CCSEEEC---TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred CceEEEC---CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence 4788999 8999998886 33568899998766433332 45677
Q ss_pred EEEEEECCCCCeEEEecCCC-----eEEEcC
Q psy6444 63 VWGVDINKDASKAASGAADF-----QAKALK 88 (88)
Q Consensus 63 i~~~~~~~~~~~~~~~~~d~-----~i~~~~ 88 (88)
+..++|+|++..++.++.+. .+.+||
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d 290 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYD 290 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEE
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEE
Confidence 89999999999888766554 677764
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=98.34 E-value=1.1e-05 Score=45.57 Aligned_cols=68 Identities=10% Similarity=0.021 Sum_probs=49.4
Q ss_pred CCEEEEEEEecCCCCcEEEEEeCC--CCEEEEECC--CCC--EEEEecCCCCeEEEEEECCCCCeEEEec-CCCeEEEc
Q psy6444 16 RPVVHLAFSDITESGYFLISACKD--GKPMLRQGD--TGD--WIGTFEGHKGCVWGVDINKDASKAASGA-ADFQAKAL 87 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~i~~~ 87 (88)
.....++|+ ++|++++.+..+ +.+.+|++. ++. .+..+.. ...+..++|+|++++++.++ .++.+.+|
T Consensus 259 ~~~~~i~~s---pdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~ 333 (361)
T 3scy_A 259 QGSGDIHLS---PDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIF 333 (361)
T ss_dssp CCEEEEEEC---TTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEE
T ss_pred CCcccEEEC---CCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEE
Confidence 446789999 799988666554 789999985 344 3344444 45677899999999887665 67888885
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.32 E-value=5.5e-06 Score=46.15 Aligned_cols=82 Identities=7% Similarity=-0.068 Sum_probs=56.7
Q ss_pred ccceeEEecCCC-CCEEEEEEEecCCCCcEE-EEEeCCCCEEEEECCCCCEEEEecCCC------CeEEEEEECCCCCeE
Q psy6444 4 IRQIPLTCSGHT-RPVVHLAFSDITESGYFL-ISACKDGKPMLRQGDTGDWIGTFEGHK------GCVWGVDINKDASKA 75 (88)
Q Consensus 4 ~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~ 75 (88)
+++.+..+..+. ..+..++|+ ++++.+ ++...++.+.+|+..+++.+..+.... ..+..++|+|+++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~s---~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 106 (349)
T 1jmx_B 30 SDTVYKSCVMPDKFGPGTAMMA---PDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEV 106 (349)
T ss_dssp TTEEEEEEECSSCCSSCEEEEC---TTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEE
T ss_pred CCcEEEEEecCCCCCCceeEEC---CCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEE
Confidence 344555555433 246678899 788755 455567889999998887766655321 235678999999988
Q ss_pred EEecCC------------CeEEEcC
Q psy6444 76 ASGAAD------------FQAKALK 88 (88)
Q Consensus 76 ~~~~~d------------~~i~~~~ 88 (88)
+.++.+ +.+.+||
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~i~~~d 131 (349)
T 1jmx_B 107 YATVNPTQRLNDHYVVKPPRLEVFS 131 (349)
T ss_dssp EEEEEEEEECSSCEEECCCEEEEEE
T ss_pred EEEcccccccccccccCCCeEEEEE
Confidence 877654 7888875
No 161
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=98.31 E-value=6.7e-06 Score=50.18 Aligned_cols=67 Identities=9% Similarity=-0.156 Sum_probs=47.8
Q ss_pred EEEEEEecCCCCcEEEEEeCCC----------------------------------CEEEEECCCCCEEEEecCC-----
Q psy6444 19 VHLAFSDITESGYFLISACKDG----------------------------------KPMLRQGDTGDWIGTFEGH----- 59 (88)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~----- 59 (88)
..+.|+ ++|+.++.++.+. .+.+|++.++.....+..+
T Consensus 176 ~~~~~S---pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~ 252 (723)
T 1xfd_A 176 IAHWWS---PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM 252 (723)
T ss_dssp EEEEEC---TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred ceEEEC---CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCC
Confidence 689999 8999888876542 6788888776644444433
Q ss_pred -CCeEEEEEECCCCCeEEEecC----CCeEEEcC
Q psy6444 60 -KGCVWGVDINKDASKAASGAA----DFQAKALK 88 (88)
Q Consensus 60 -~~~i~~~~~~~~~~~~~~~~~----d~~i~~~~ 88 (88)
...+..++|+|++++++.... +..+.+||
T Consensus 253 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 286 (723)
T 1xfd_A 253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCD 286 (723)
T ss_dssp SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEE
T ss_pred ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEe
Confidence 567889999999998865432 24566664
No 162
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.30 E-value=3.4e-06 Score=51.07 Aligned_cols=71 Identities=11% Similarity=-0.022 Sum_probs=51.9
Q ss_pred eeEEecC-----CCCCEEEEEEEecCCCCcEEEEEeCC----------CCEEEEECCC------CCEEEEec-CCCCeEE
Q psy6444 7 IPLTCSG-----HTRPVVHLAFSDITESGYFLISACKD----------GKPMLRQGDT------GDWIGTFE-GHKGCVW 64 (88)
Q Consensus 7 ~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~------~~~~~~~~-~~~~~i~ 64 (88)
....+.. |...+..++|+ ++|+.++..+.+ ..+.+|++.. +. ...+. .+...+.
T Consensus 116 ~~~~l~~~~~~~~~~~~~~~~~s---pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~ 191 (662)
T 3azo_A 116 VPRPLTPVSAVGGGLRWADPVLL---PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVT 191 (662)
T ss_dssp CCEECSCCCCSTTCEEEEEEEEE---TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEEC
T ss_pred CCEeccCCccCCCCccccCcEEC---CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCccc
Confidence 3445555 56678899999 899999888766 4688899876 44 34444 5556777
Q ss_pred EEEECCCCCeEEEecCC
Q psy6444 65 GVDINKDASKAASGAAD 81 (88)
Q Consensus 65 ~~~~~~~~~~~~~~~~d 81 (88)
.++|+|||++++..+.+
T Consensus 192 ~~~~SpDG~~la~~~~~ 208 (662)
T 3azo_A 192 GPRLSPDGRQAVWLAWD 208 (662)
T ss_dssp CCEECTTSSEEEEEEEC
T ss_pred CceECCCCCEEEEEECC
Confidence 88999999999866543
No 163
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.29 E-value=7e-06 Score=49.74 Aligned_cols=77 Identities=14% Similarity=0.013 Sum_probs=53.8
Q ss_pred eEEec-CCCCCEEEEEEEecCCCCcEEEEEeCCC--------CEEEEECC-CC---CEEEEecCCCCeEEEEEECCCCCe
Q psy6444 8 PLTCS-GHTRPVVHLAFSDITESGYFLISACKDG--------KPMLRQGD-TG---DWIGTFEGHKGCVWGVDINKDASK 74 (88)
Q Consensus 8 ~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-~~---~~~~~~~~~~~~i~~~~~~~~~~~ 74 (88)
...+. .+...+..++|+ ++|+.++..+.++ .+.+|++. ++ ........+...+..+.|+|++++
T Consensus 179 ~~~l~~~~~~~~~~~~~S---pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 179 VRELSDDAHRFVTGPRLS---PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp SEESSCSCSSEECCCEEC---TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred eeEEEecCCCcccCceEC---CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence 34455 555667788999 8999888776543 68889987 45 332333344678889999999997
Q ss_pred EEEecCCC--eEEEc
Q psy6444 75 AASGAADF--QAKAL 87 (88)
Q Consensus 75 ~~~~~~d~--~i~~~ 87 (88)
++++..++ .|.+|
T Consensus 256 ~~~~~~~~~~~l~~~ 270 (662)
T 3azo_A 256 IVATDRTGWWNLHRV 270 (662)
T ss_dssp EEEECTTSSCEEEEE
T ss_pred EEEECCCCCeEEEEE
Confidence 77777777 44444
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.29 E-value=5.3e-06 Score=51.18 Aligned_cols=80 Identities=11% Similarity=-0.079 Sum_probs=57.6
Q ss_pred ccceeEEecCCCCC-----EEEEEEEecCCCCcEEEEEeCC---------CCEEEEECCCCCEEEEecCCCCeEEEEEEC
Q psy6444 4 IRQIPLTCSGHTRP-----VVHLAFSDITESGYFLISACKD---------GKPMLRQGDTGDWIGTFEGHKGCVWGVDIN 69 (88)
Q Consensus 4 ~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 69 (88)
+++....+.+|+.. ...+.|+ ++|+.++.++.+ +.+.+|++.++.. ..+..+...+...+||
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~S---pdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~-~~l~~~~~~~~~~~~S 120 (740)
T 4a5s_A 45 YGNSSVFLENSTFDEFGHSINDYSIS---PDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWS 120 (740)
T ss_dssp TCCEEEEECTTTTTTCCSCCCEEEEC---TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEEC
T ss_pred CCceEEEEechhhhhhcccccceEEC---CCCCEEEEEECCeeeEEEccceEEEEEECCCCcE-EEcccCCCcceeeEEC
Confidence 34445556666532 2337889 899998888775 4566999987664 4466667788999999
Q ss_pred CCCCeEEEecCCCeEEEcC
Q psy6444 70 KDASKAASGAADFQAKALK 88 (88)
Q Consensus 70 ~~~~~~~~~~~d~~i~~~~ 88 (88)
|||+.++.+ .++.|.+||
T Consensus 121 PdG~~la~~-~~~~i~~~~ 138 (740)
T 4a5s_A 121 PVGHKLAYV-WNNDIYVKI 138 (740)
T ss_dssp SSTTCEEEE-ETTEEEEES
T ss_pred CCCCEEEEE-ECCeEEEEE
Confidence 999999876 467788775
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.28 E-value=4.1e-05 Score=41.88 Aligned_cols=78 Identities=17% Similarity=0.255 Sum_probs=55.9
Q ss_pred ceeEEecCC--CCCEEEEEEEecCCCCcEEEEEeCCC-CEEEEECCCCCEEEEecCCC--CeEEEEEECCCCCeEEEecC
Q psy6444 6 QIPLTCSGH--TRPVVHLAFSDITESGYFLISACKDG-KPMLRQGDTGDWIGTFEGHK--GCVWGVDINKDASKAASGAA 80 (88)
Q Consensus 6 ~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~ 80 (88)
..+..+..+ ......++++ ++|..+++...++ .+.+|+. .+..+..+..+. ..+..+++++++.++++ +.
T Consensus 195 ~~~~~~~~~g~~~~p~~i~~d---~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~ 269 (286)
T 1q7f_A 195 QYLRQIGGEGITNYPIGVGIN---SNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SK 269 (286)
T ss_dssp CEEEEESCTTTSCSEEEEEEC---TTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ET
T ss_pred CEEEEEccCCccCCCcEEEEC---CCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CC
Confidence 344444332 3567889998 7898888887775 8999995 466666665433 34778999999987777 56
Q ss_pred CCeEEEcC
Q psy6444 81 DFQAKALK 88 (88)
Q Consensus 81 d~~i~~~~ 88 (88)
++.+++|+
T Consensus 270 ~~~v~v~~ 277 (286)
T 1q7f_A 270 DYRLYIYR 277 (286)
T ss_dssp TTEEEEEE
T ss_pred CCeEEEEE
Confidence 89999984
No 166
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.27 E-value=6.6e-06 Score=45.56 Aligned_cols=81 Identities=10% Similarity=0.046 Sum_probs=55.4
Q ss_pred cceeEEecCCC-C-CEEEEEEEecCCCCcEE-EEEeCCCCEEEEECCCCCEEEEecCC-----CCeEEEEEECCCCCeEE
Q psy6444 5 RQIPLTCSGHT-R-PVVHLAFSDITESGYFL-ISACKDGKPMLRQGDTGDWIGTFEGH-----KGCVWGVDINKDASKAA 76 (88)
Q Consensus 5 ~~~~~~~~~~~-~-~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~ 76 (88)
++.+..+.... . .+..++|+ ++++.+ ++...++.+.+|+..++..+..+... ...+..++|+|++..++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~s---~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 97 (337)
T 1pby_B 21 MAVDKVITIADAGPTPMVPMVA---PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLA 97 (337)
T ss_dssp TEEEEEEECTTCTTCCCCEEEC---TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEE
T ss_pred CcEEEEEEcCCCCCCccceEEc---CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEE
Confidence 44555544322 1 46778899 788655 55666788999999888876665532 12456789999998887
Q ss_pred Eec------------CCCeEEEcC
Q psy6444 77 SGA------------ADFQAKALK 88 (88)
Q Consensus 77 ~~~------------~d~~i~~~~ 88 (88)
.+. .++.+.+||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~v~d 121 (337)
T 1pby_B 98 IYESPVRLELTHFEVQPTRVALYD 121 (337)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEE
T ss_pred EEecccccccccccccCceEEEEE
Confidence 764 468888875
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.25 E-value=6.2e-05 Score=42.77 Aligned_cols=71 Identities=13% Similarity=0.059 Sum_probs=51.3
Q ss_pred CCCCEEEEEEEecCCCCcEEEEEeC-CCCEEEEECC-CCCEE--EEec--CCCCeEEEEEECCCCCeEEEec-CCCeEEE
Q psy6444 14 HTRPVVHLAFSDITESGYFLISACK-DGKPMLRQGD-TGDWI--GTFE--GHKGCVWGVDINKDASKAASGA-ADFQAKA 86 (88)
Q Consensus 14 ~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~--~~~~--~~~~~i~~~~~~~~~~~~~~~~-~d~~i~~ 86 (88)
+...+..++|+ ++|+.++.+.. +..+.+|++. ++... ..+. .+...+..++|+|++++++.++ .++.+.+
T Consensus 143 ~~~~~~~~~~s---pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v 219 (365)
T 1jof_A 143 ENTGIHGMVFD---PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICE 219 (365)
T ss_dssp TTCCEEEEEEC---TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCcceEEEEC---CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEE
Confidence 34568889999 79988776654 5689999987 56532 2333 2345688999999999887655 4678887
Q ss_pred c
Q psy6444 87 L 87 (88)
Q Consensus 87 ~ 87 (88)
|
T Consensus 220 ~ 220 (365)
T 1jof_A 220 Y 220 (365)
T ss_dssp E
T ss_pred E
Confidence 6
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.25 E-value=7e-05 Score=42.05 Aligned_cols=71 Identities=14% Similarity=0.100 Sum_probs=57.0
Q ss_pred CCCEEEEEEEecCCCCcEEEEEeCC------------------------CCEEEEECCCCCEEEEec-CCCCeEEEEEEC
Q psy6444 15 TRPVVHLAFSDITESGYFLISACKD------------------------GKPMLRQGDTGDWIGTFE-GHKGCVWGVDIN 69 (88)
Q Consensus 15 ~~~v~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~ 69 (88)
.+.+..++++ ++|+.+++...+ +.+.+|+..++..+..+. ++......++++
T Consensus 23 l~~v~~va~d---~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d 99 (329)
T 3fvz_A 23 PGQVSGVALD---SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSID 99 (329)
T ss_dssp CSCEEEEEEC---TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEEC
T ss_pred cCCceEEEEC---CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEEC
Confidence 4678899999 789998888776 368899988787665554 344678899999
Q ss_pred CCCCeEEEecCCCeEEEcC
Q psy6444 70 KDASKAASGAADFQAKALK 88 (88)
Q Consensus 70 ~~~~~~~~~~~d~~i~~~~ 88 (88)
+++..+++...++.|++||
T Consensus 100 ~~g~l~v~d~~~~~v~~~~ 118 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLD 118 (329)
T ss_dssp TTSCEEEEETTTTEEEEEC
T ss_pred CCCCEEEEECCCCEEEEEe
Confidence 9999888888888898875
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.22 E-value=1.2e-05 Score=45.89 Aligned_cols=62 Identities=5% Similarity=0.048 Sum_probs=49.1
Q ss_pred EEEEecCCCCcEEEEEeC-----------CCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 21 LAFSDITESGYFLISACK-----------DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
++++ +++..++.... ...+.+||..+.+.+..+..+. ...++|+|+++++++++. +.+.+||
T Consensus 259 ~a~~---~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D 331 (361)
T 2oiz_A 259 VGLH---RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYD 331 (361)
T ss_dssp EEEE---TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEE
T ss_pred EEEe---cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEE
Confidence 5677 67766665432 2368899999998888888766 899999999998887776 8999986
No 170
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=98.19 E-value=2e-06 Score=52.59 Aligned_cols=65 Identities=9% Similarity=0.004 Sum_probs=49.6
Q ss_pred EEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCC---eEEEEEECCCCCeEEEecC---------CCeEEEc
Q psy6444 20 HLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKG---CVWGVDINKDASKAASGAA---------DFQAKAL 87 (88)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~---------d~~i~~~ 87 (88)
.+.|+ ++++.+++ +.++.+.+|++..+.....+..+.. .+..++|+||+++++.++. ++.+++|
T Consensus 20 ~~~~s---~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWI---SGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEES---SSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEEC---CCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence 67899 78865554 4689999999988876655554432 3788999999999987665 6788888
Q ss_pred C
Q psy6444 88 K 88 (88)
Q Consensus 88 ~ 88 (88)
|
T Consensus 96 d 96 (719)
T 1z68_A 96 D 96 (719)
T ss_dssp E
T ss_pred E
Confidence 5
No 171
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.18 E-value=2.2e-05 Score=45.70 Aligned_cols=67 Identities=13% Similarity=0.024 Sum_probs=50.2
Q ss_pred ecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 11 CSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 11 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
...|...+..+.+.+ + .++.+..||.+.+|++..+.... ....|.+++|+|+| ++.+..|+++++|+
T Consensus 122 ~~~~~~~v~~i~~~~--p---~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~ 188 (388)
T 1xip_A 122 VTSFEKPVFQLKNVN--N---TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFA 188 (388)
T ss_dssp EEECSSCEEEEEECS--S---EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEE
T ss_pred cceeecceeeEEecC--C---CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEc
Confidence 445566777776652 2 38888999999999998766543 33578999999999 55677889988873
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.17 E-value=0.00014 Score=39.79 Aligned_cols=71 Identities=13% Similarity=0.152 Sum_probs=54.8
Q ss_pred CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCC--CCeEEEEEECCCCCeEEEecCCC-eEEEcC
Q psy6444 14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGH--KGCVWGVDINKDASKAASGAADF-QAKALK 88 (88)
Q Consensus 14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~d~-~i~~~~ 88 (88)
+...+..++++ ++++.+++...++.|.+|+.. +..+..+... ...+..+++++++.++++...++ .|.+||
T Consensus 162 ~~~~p~~i~~~---~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~ 235 (286)
T 1q7f_A 162 HLEFPNGVVVN---DKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT 235 (286)
T ss_dssp TCSSEEEEEEC---SSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred ccCCcEEEEEC---CCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence 44567889999 788888877778899999974 5655666443 35778999999999888877775 898886
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.14 E-value=3.1e-05 Score=43.48 Aligned_cols=80 Identities=11% Similarity=0.167 Sum_probs=56.6
Q ss_pred cceeEEec--CCCCCEEEEEEEecCCCCcEEEEEe-------CCCCEEEEECCCCCEEEEec---CCCCeEEEEEECCCC
Q psy6444 5 RQIPLTCS--GHTRPVVHLAFSDITESGYFLISAC-------KDGKPMLRQGDTGDWIGTFE---GHKGCVWGVDINKDA 72 (88)
Q Consensus 5 ~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~ 72 (88)
++.+..+. .+...+..++++ + +..+.+.+ .+..+.+|+..++..+..+. .+......+++++++
T Consensus 228 G~~~~~~~~~~~~~~~~~~~~~---p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG 303 (329)
T 3fvz_A 228 KEFVREIKHASFGRNVFAISYI---P-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG 303 (329)
T ss_dssp CCEEEEECCTTTTTCEEEEEEE---T-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS
T ss_pred CcEEEEEeccccCCCcceeeec---C-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC
Confidence 44444543 244567778887 6 43444333 23478899998888877763 566778999999999
Q ss_pred CeEEEecCCCeEEEcC
Q psy6444 73 SKAASGAADFQAKALK 88 (88)
Q Consensus 73 ~~~~~~~~d~~i~~~~ 88 (88)
..+++...++.|++|+
T Consensus 304 ~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 304 TVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EEEEEESSSCCEEEEE
T ss_pred CEEEEECCCCEEEEEe
Confidence 8888888888998874
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.11 E-value=4.6e-06 Score=47.24 Aligned_cols=82 Identities=15% Similarity=0.064 Sum_probs=52.6
Q ss_pred CccceeEEecCCCCC-----EEEEEEEecCCCCcEEEEEeCC-C--CEEEEECCCCCEEEEecCCCCeE-EEEEECCCCC
Q psy6444 3 SIRQIPLTCSGHTRP-----VVHLAFSDITESGYFLISACKD-G--KPMLRQGDTGDWIGTFEGHKGCV-WGVDINKDAS 73 (88)
Q Consensus 3 ~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~ 73 (88)
..+..+..+..+... +..++|+ ++|+.++..... + .+.+|+...+... .+....... ....|+|+++
T Consensus 18 ~~g~~~~~l~~~~~~~~~~~~~~~~~S---pdG~~l~~~~~~~g~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~spdg~ 93 (396)
T 3c5m_A 18 DTQVKVTRLTPTDIICHRNYFYQKCFT---QDGKKLLFAGDFDGNRNYYLLNLETQQAV-QLTEGKGDNTFGGFISTDER 93 (396)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBC---TTSCEEEEEECTTSSCEEEEEETTTTEEE-ECCCSSCBCTTTCEECTTSS
T ss_pred CCCcceEEEecCCCCccceeeecCcCC---CCCCEEEEEEecCCCceEEEEECCCCcEE-EeecCCCCccccceECCCCC
Confidence 345556666655433 5667889 799887766543 3 5677788766543 333332222 2367899999
Q ss_pred eEEEecCCCeEEEcC
Q psy6444 74 KAASGAADFQAKALK 88 (88)
Q Consensus 74 ~~~~~~~d~~i~~~~ 88 (88)
.++..+.+..+.+||
T Consensus 94 ~l~~~~~~~~l~~~d 108 (396)
T 3c5m_A 94 AFFYVKNELNLMKVD 108 (396)
T ss_dssp EEEEEETTTEEEEEE
T ss_pred EEEEEEcCCcEEEEE
Confidence 998877777787764
No 175
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.10 E-value=1.3e-05 Score=49.20 Aligned_cols=66 Identities=15% Similarity=0.017 Sum_probs=45.6
Q ss_pred CCCCEEEEEEEecCCCCcEEEEEeCCC-----CEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 14 HTRPVVHLAFSDITESGYFLISACKDG-----KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
|+..+..++|+ ++|+.++.+..++ .+.+|++.++......... ..+..++|+||++.++.++.+..
T Consensus 123 ~~~~~~~~~~S---PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~ 193 (710)
T 2xdw_A 123 GTVALRGYAFS---EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQ 193 (710)
T ss_dssp SCEEEEEEEEC---TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCC
T ss_pred CCEEEEEEEEC---CCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCc
Confidence 33457788999 8999888665533 7999999887755432221 12456899999998887665543
No 176
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.08 E-value=8.7e-05 Score=42.38 Aligned_cols=64 Identities=11% Similarity=0.154 Sum_probs=51.9
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC--CEEEEecCCCCeEEEEEECCCCC
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG--DWIGTFEGHKGCVWGVDINKDAS 73 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~ 73 (88)
.++.+.++..+. ...++|+ ++|+.+++++. +.+.+||..++ +.+..+.......+.+.++|+|.
T Consensus 295 t~~~v~~i~~~~--p~~ia~s---pdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 295 TKQRVARIPGRD--ALSMTID---QQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTEEEEEEECTT--CCEEEEE---TTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCcEEEEEecCC--eeEEEEC---CCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 356667777765 7889999 79999888876 89999999998 88888766667778889999875
No 177
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.02 E-value=1.2e-05 Score=45.64 Aligned_cols=69 Identities=6% Similarity=-0.077 Sum_probs=47.5
Q ss_pred CEEEEE-EEecCCCCcEEEEEeCCC------CEEEEECC-CCCEEE---EecCCCCeEEEEEECC---CCCeEEEecC-C
Q psy6444 17 PVVHLA-FSDITESGYFLISACKDG------KPMLRQGD-TGDWIG---TFEGHKGCVWGVDINK---DASKAASGAA-D 81 (88)
Q Consensus 17 ~v~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~---~~~~~~~~i~~~~~~~---~~~~~~~~~~-d 81 (88)
.+..++ |+ ++|+.++.+..+. .+.+|++. ++.... ....+......++|+| ++.+++.++. +
T Consensus 255 ~~~~i~~~s---pdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~ 331 (365)
T 1jof_A 255 YRADVCALT---FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE 331 (365)
T ss_dssp EEEEEEEEC---TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS
T ss_pred ccccEEEEC---CCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCC
Confidence 477899 99 7998887665432 79999985 455332 1322333445678899 7998888775 4
Q ss_pred CeEEEcC
Q psy6444 82 FQAKALK 88 (88)
Q Consensus 82 ~~i~~~~ 88 (88)
+.+.+|+
T Consensus 332 ~~v~v~~ 338 (365)
T 1jof_A 332 GWLEIYR 338 (365)
T ss_dssp CEEEEEE
T ss_pred CeEEEEE
Confidence 8898884
No 178
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=97.99 E-value=7.8e-06 Score=50.14 Aligned_cols=65 Identities=17% Similarity=0.049 Sum_probs=44.5
Q ss_pred CCCCEEEEEEEecCCCCcEEEE-----EeCCCCEEEEECCCCCEE-E-EecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 14 HTRPVVHLAFSDITESGYFLIS-----ACKDGKPMLRQGDTGDWI-G-TFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 14 ~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~-~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
|+..+..++|+ ++|+.++. ++.+..|.+|++.++..+ . .+... ....++|+|++..++.++.+..
T Consensus 119 ~~~~~~~~~~S---PDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~--~~~~~~wspDg~~l~~~~~d~~ 190 (695)
T 2bkl_A 119 GTVSLGTWAVS---WDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGG--KYATPKWTPDSKGFYYEWLPTD 190 (695)
T ss_dssp SCEEEEEEEEC---TTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCC--TTCCCEECTTSSEEEEEECCCC
T ss_pred CCEEEEEEEEC---CCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcc--cccceEEecCCCEEEEEEecCC
Confidence 44468889999 79998873 333457999999887753 1 11111 1156799999999987776554
No 179
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=97.91 E-value=0.00052 Score=37.79 Aligned_cols=69 Identities=7% Similarity=-0.037 Sum_probs=50.6
Q ss_pred CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEecCCCeEEEc
Q psy6444 16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGAADFQAKAL 87 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~i~~~ 87 (88)
.....++++ ++|...++...++.+..|+..++..+..+..+...+..+++++++. ++++...++.+..+
T Consensus 226 ~~p~~i~~d---~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~ 295 (314)
T 1pjx_A 226 GGADGMDFD---EDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF 295 (314)
T ss_dssp CEEEEEEEB---TTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEC---CCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEE
Confidence 446678888 7888888877778899999875665555555557788999999998 44555556666654
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=97.89 E-value=0.0011 Score=40.38 Aligned_cols=79 Identities=16% Similarity=0.064 Sum_probs=57.1
Q ss_pred cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC--CCCEEEEecCCCCeEEEEEEC----CCCCeEEEe
Q psy6444 5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGD--TGDWIGTFEGHKGCVWGVDIN----KDASKAASG 78 (88)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~ 78 (88)
++.+..+... ..+..+.++ ++|++++.++.++.+.++|+. +...+..+... .....++++ |++++++.+
T Consensus 187 ~~v~~~i~~g-~~p~~v~~S---pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~ 261 (567)
T 1qks_A 187 YEIKTVLDTG-YAVHISRLS---ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAG 261 (567)
T ss_dssp CCEEEEEECS-SCEEEEEEC---TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEE
T ss_pred CeEEEEEeCC-CCccceEEC---CCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEE
Confidence 3445455432 345678899 899999999999999999995 66666666543 346788999 699988765
Q ss_pred c-CCCeEEEcC
Q psy6444 79 A-ADFQAKALK 88 (88)
Q Consensus 79 ~-~d~~i~~~~ 88 (88)
+ .++++.++|
T Consensus 262 n~~~~~v~ViD 272 (567)
T 1qks_A 262 AYWPPQYVIMD 272 (567)
T ss_dssp EEETTEEEEEE
T ss_pred EccCCeEEEEE
Confidence 5 557777764
No 181
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.87 E-value=0.00059 Score=36.84 Aligned_cols=70 Identities=9% Similarity=0.004 Sum_probs=51.9
Q ss_pred CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
.....++++ ++|..+++...++.+..|+................+..+++++++..+++...++.|++++
T Consensus 192 ~~p~~i~~d---~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 192 TAPWGIAVD---EAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp CSEEEEEEC---TTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred CCceEEEEC---CCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 557788888 7887777777788899998764433222222335688999999999888888899998874
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=97.87 E-value=0.00014 Score=40.70 Aligned_cols=59 Identities=14% Similarity=0.028 Sum_probs=40.9
Q ss_pred CCEEEEEEEecCCCCcEEEEEeCC---CC--EEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEec
Q psy6444 16 RPVVHLAFSDITESGYFLISACKD---GK--PMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGA 79 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 79 (88)
..+..+.|+ |+|+.++....+ +. +.++++..+........ .. +..+.|+|++..++..+
T Consensus 59 ~~~~~~~~S---pDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~ 122 (347)
T 2gop_A 59 ENATMPRIS---PDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVG 122 (347)
T ss_dssp ESCEEEEEC---TTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEE
T ss_pred ccCCCeEEC---CCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEE
Confidence 346678999 799888876653 23 66777776554333332 23 88899999999887655
No 183
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=97.87 E-value=1.7e-05 Score=48.95 Aligned_cols=61 Identities=10% Similarity=0.021 Sum_probs=46.6
Q ss_pred CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCe-----EEEEEECCCCCeEEEecCC
Q psy6444 16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGC-----VWGVDINKDASKAASGAAD 81 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~~~~d 81 (88)
.....+.|+ ++++.+++. ++.+.+|++.++.....+.++... .....|+||+++++.++.+
T Consensus 17 ~~~~~~~w~---~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~ 82 (740)
T 4a5s_A 17 LKLYSLRWI---SDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNY 82 (740)
T ss_dssp CCCCCEEEC---SSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEE
T ss_pred ccccccEEC---CCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECC
Confidence 345578999 799888886 889999999988876666665422 2347889999999877665
No 184
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=97.77 E-value=0.00049 Score=39.00 Aligned_cols=64 Identities=14% Similarity=-0.087 Sum_probs=44.9
Q ss_pred ecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEE--EECCCCCeEEE
Q psy6444 11 CSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGV--DINKDASKAAS 77 (88)
Q Consensus 11 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~ 77 (88)
..++...+..+.|+ ++++.++....+..+.+|++.++........+...+... .+++++..++.
T Consensus 76 t~~~~~~~~~~~~s---pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~ 141 (388)
T 3pe7_A 76 TEGRGDNTFGGFLS---PDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVG 141 (388)
T ss_dssp CCSSCBCSSSCEEC---TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEE
T ss_pred eeCCCCCccceEEc---CCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeecc
Confidence 33444444456799 899999999988899999998887655555555544333 34888887763
No 185
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=97.73 E-value=0.00024 Score=39.27 Aligned_cols=59 Identities=17% Similarity=0.036 Sum_probs=46.5
Q ss_pred CCCcEEEEEeCCCCEEEEECCCCCEEEEecCCC-CeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 28 ESGYFLISACKDGKPMLRQGDTGDWIGTFEGHK-GCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
..++.+++++.++.+.+||..+++.+..+..+. ..+..+.+.|+++.+++ .+..+..||
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d 62 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMIT 62 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEEC
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEEC
Confidence 457889999999999999998899888887765 46778889999998884 355565554
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=97.72 E-value=0.00027 Score=43.54 Aligned_cols=68 Identities=9% Similarity=0.024 Sum_probs=47.2
Q ss_pred EEEEEEEecCCCCcEEEEEeCCCC----------------EEEEECCCCC----EEEEecCCCCeEEEEEECCCCCeEEE
Q psy6444 18 VVHLAFSDITESGYFLISACKDGK----------------PMLRQGDTGD----WIGTFEGHKGCVWGVDINKDASKAAS 77 (88)
Q Consensus 18 v~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~ 77 (88)
+..++|+ ++|+.++.+..+.. +.+|++.++. .+.....+...+..+.|+|++++++.
T Consensus 173 ~~~~~ws---pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 249 (710)
T 2xdw_A 173 FSCMAWT---HDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL 249 (710)
T ss_dssp SCCEEEC---TTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred cceEEEE---eCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEE
Confidence 4568899 79998888877655 8889987654 22222234556778899999998875
Q ss_pred ecC-----CCeEEEcC
Q psy6444 78 GAA-----DFQAKALK 88 (88)
Q Consensus 78 ~~~-----d~~i~~~~ 88 (88)
.+. +..+.+||
T Consensus 250 ~~~~~~~~~~~l~~~d 265 (710)
T 2xdw_A 250 SIREGCDPVNRLWYCD 265 (710)
T ss_dssp EEECSSSSCCEEEEEE
T ss_pred EEEccCCCccEEEEEE
Confidence 443 45676664
No 187
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=97.69 E-value=0.00045 Score=42.53 Aligned_cols=61 Identities=7% Similarity=-0.109 Sum_probs=44.9
Q ss_pred EEEEEEecCCCCcEEEEEeCCCC-------------EEEEECCCCC----EEEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444 19 VHLAFSDITESGYFLISACKDGK-------------PMLRQGDTGD----WIGTFEGHKGCVWGVDINKDASKAASGAAD 81 (88)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d 81 (88)
..++|+ ++|+.++..+.+.. +.+|++.++. .+.....+...+..+.|+|++++++..+.+
T Consensus 171 ~~~~ws---pDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~ 247 (695)
T 2bkl_A 171 ATPKWT---PDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILR 247 (695)
T ss_dssp CCCEEC---TTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEE
T ss_pred cceEEe---cCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeC
Confidence 568899 89999998887665 9999987654 333333445678889999999988765544
Q ss_pred C
Q psy6444 82 F 82 (88)
Q Consensus 82 ~ 82 (88)
+
T Consensus 248 ~ 248 (695)
T 2bkl_A 248 G 248 (695)
T ss_dssp T
T ss_pred C
Confidence 3
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=97.68 E-value=0.0015 Score=35.90 Aligned_cols=72 Identities=21% Similarity=0.103 Sum_probs=49.5
Q ss_pred cCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC-CCCE---EEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444 12 SGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGD-TGDW---IGTFEGHKGCVWGVDINKDASKAASGAADFQAKAL 87 (88)
Q Consensus 12 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~ 87 (88)
..+......++|+ ++++.+++...++.+.+|++. .+.. ...+......+..+++.+++.++++. ++.|.+|
T Consensus 168 ~~~~~~~~gi~~s---~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 168 IRDRVKPNGLAFL---PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp ECCCSSEEEEEEC---TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred ecCCCCCccEEEC---CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 3444556788999 789888777777889999986 3443 22333334455678899999877665 6777777
Q ss_pred C
Q psy6444 88 K 88 (88)
Q Consensus 88 ~ 88 (88)
|
T Consensus 243 ~ 243 (296)
T 3e5z_A 243 T 243 (296)
T ss_dssp C
T ss_pred C
Confidence 5
No 189
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.65 E-value=0.0022 Score=36.99 Aligned_cols=79 Identities=13% Similarity=-0.091 Sum_probs=52.5
Q ss_pred cceeEEecCCCCCEEEEEEEecCCCCcEEEEEe----------CCCCEEEEECCCCCEEEEecCC-------CCeEEEEE
Q psy6444 5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISAC----------KDGKPMLRQGDTGDWIGTFEGH-------KGCVWGVD 67 (88)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~ 67 (88)
++.+..+.....+ .+.++ ++|+.++.+. .+..+.++|..+.+.+..+... ......+.
T Consensus 57 ~~~~~~i~~g~~p--~i~~s---pDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~ 131 (373)
T 2mad_H 57 GSILGHVNGGFLP--NPVAA---HSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNA 131 (373)
T ss_pred CeEEEEecCCCCC--CeEEC---CCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceE
Confidence 4444444443333 78899 7998888775 2567889999877766655322 12235789
Q ss_pred ECCCCCeEEEecC--CCeEEEcC
Q psy6444 68 INKDASKAASGAA--DFQAKALK 88 (88)
Q Consensus 68 ~~~~~~~~~~~~~--d~~i~~~~ 88 (88)
++|++++++.++. +..+.++|
T Consensus 132 ~spDG~~l~v~n~~~~~~v~viD 154 (373)
T 2mad_H 132 NTPNNADLLFFQFAAGPAVGLVV 154 (373)
T ss_pred ECCCCCEEEEEecCCCCeEEEEE
Confidence 9999998887653 46677664
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=97.58 E-value=0.0023 Score=35.36 Aligned_cols=78 Identities=10% Similarity=0.006 Sum_probs=56.7
Q ss_pred ccceeEEecCCC-CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCC-CCeEEEEEECCCCCeEEEecC-
Q psy6444 4 IRQIPLTCSGHT-RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGH-KGCVWGVDINKDASKAASGAA- 80 (88)
Q Consensus 4 ~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~- 80 (88)
+++.+-.+..+. ..+..+.+. ++|+.+++ .++.+..|+. +++.+..+... ...+....+.+++..+++.+.
T Consensus 24 tG~~~w~~~~~~~~~~~~~~~~---pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~ 97 (276)
T 3no2_A 24 TKEIVWEYPLEKGWECNSVAAT---KAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGH 97 (276)
T ss_dssp TTEEEEEEECCTTCCCCEEEEC---TTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEEST
T ss_pred CCeEEEEeCCCccCCCcCeEEC---CCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCC
Confidence 566676776655 356778888 79998883 3567888998 78887777764 346778888999998887665
Q ss_pred CCeEEEc
Q psy6444 81 DFQAKAL 87 (88)
Q Consensus 81 d~~i~~~ 87 (88)
++.+..+
T Consensus 98 ~~~v~~v 104 (276)
T 3no2_A 98 PSTILEV 104 (276)
T ss_dssp TEEEEEE
T ss_pred CCEEEEE
Confidence 5555544
No 191
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.57 E-value=0.001 Score=37.69 Aligned_cols=72 Identities=11% Similarity=-0.105 Sum_probs=45.8
Q ss_pred CCCCCEEEEEEEecCC-CCcEEEEEeCC------CCEEEEECCCCCEEEEecCC--CCeEEEEEECCCCCeEEEecCC--
Q psy6444 13 GHTRPVVHLAFSDITE-SGYFLISACKD------GKPMLRQGDTGDWIGTFEGH--KGCVWGVDINKDASKAASGAAD-- 81 (88)
Q Consensus 13 ~~~~~v~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~d-- 81 (88)
.+...+..+.|+ + ++..++....+ ..+.+++...+.. ..+..+ ...+..+.|+|++..++..+.+
T Consensus 185 ~~~~~~~~~~~s---p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 260 (396)
T 3c5m_A 185 QDTAWLGHPIYR---PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKG 260 (396)
T ss_dssp EESSCEEEEEEE---TTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred cCCcccccceEC---CCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccceEECCCCCEEEEEecCCC
Confidence 345667888999 6 78766665543 3577888764442 233322 2357788999999977655332
Q ss_pred ---CeEEEcC
Q psy6444 82 ---FQAKALK 88 (88)
Q Consensus 82 ---~~i~~~~ 88 (88)
+.+.+||
T Consensus 261 ~~~~~l~~~d 270 (396)
T 3c5m_A 261 QTDRVIYKAN 270 (396)
T ss_dssp TCCEEEEEEC
T ss_pred CccceEEEEE
Confidence 3377775
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.56 E-value=0.0022 Score=34.57 Aligned_cols=69 Identities=10% Similarity=0.149 Sum_probs=49.7
Q ss_pred CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
....++++ ++++.+++...++.+..|+................+..+++.+++..+++...++.+.+||
T Consensus 151 ~p~~i~~~---~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~ 219 (270)
T 1rwi_B 151 DPDGVAVD---NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL 219 (270)
T ss_dssp SCCCEEEC---TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEEC
T ss_pred CceeEEEe---CCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEc
Confidence 45678888 7888777776677899998875554332233336678899999998777777778888775
No 193
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.45 E-value=0.0037 Score=34.68 Aligned_cols=77 Identities=9% Similarity=-0.019 Sum_probs=53.5
Q ss_pred eeEEecCCCCCEEEEEEEecCCCCc-EEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444 7 IPLTCSGHTRPVVHLAFSDITESGY-FLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK 85 (88)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~ 85 (88)
.+..+.........+.|+ ++++ .+++...++.+..|+. .+. ...+......+..+.++++++++++...++.|.
T Consensus 36 ~~~~l~~~~~~~egp~~~---~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWW---EAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp CCEEEECCCSSEEEEEEE---GGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred ceEEEecCCcCccCCeEe---CCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEE
Confidence 344555556667889999 6887 6677777788999987 344 344444556678899999999777655556666
Q ss_pred EcC
Q psy6444 86 ALK 88 (88)
Q Consensus 86 ~~~ 88 (88)
.|+
T Consensus 111 ~~~ 113 (305)
T 3dr2_A 111 RSD 113 (305)
T ss_dssp EEC
T ss_pred EEC
Confidence 553
No 194
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=97.44 E-value=0.0014 Score=39.89 Aligned_cols=58 Identities=12% Similarity=0.061 Sum_probs=46.8
Q ss_pred CcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 30 GYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
+..+++...++.+.++|..+++.+..+... .....+.++|+++++..++.|+.+.+||
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD 224 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMID 224 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEE
Confidence 346667777889999999988888777643 3566899999999988888899998875
No 195
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.40 E-value=0.00094 Score=38.65 Aligned_cols=80 Identities=11% Similarity=-0.230 Sum_probs=55.5
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEe----------CCCCEEEEECCCCCEEEEecCC-------CCeEEEE
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISAC----------KDGKPMLRQGDTGDWIGTFEGH-------KGCVWGV 66 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~ 66 (88)
..+.+.++.....+ .+.++ +++..++.+. .++.+.++|..+.+.+..+... ......+
T Consensus 55 t~~v~~~i~vG~~P--~i~~s---pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~i 129 (368)
T 1mda_H 55 CGVTLGHSLGAFLS--LAVAG---HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHII 129 (368)
T ss_dssp TTEEEEEEEECTTC--EEEEC---TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSE
T ss_pred CCeEEEEEeCCCCC--ceEEC---CCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceE
Confidence 34555555554455 68899 7898777765 3577999999999888777532 1234567
Q ss_pred EECCCCCeEEEecC--CCeEEE--cC
Q psy6444 67 DINKDASKAASGAA--DFQAKA--LK 88 (88)
Q Consensus 67 ~~~~~~~~~~~~~~--d~~i~~--~~ 88 (88)
.++|+++++..+.. +..+.+ +|
T Consensus 130 a~SpDGk~lyVan~~~~~~v~V~~iD 155 (368)
T 1mda_H 130 GNCASSACLLFFLFGSSAAAGLSVPG 155 (368)
T ss_dssp EECTTSSCEEEEECSSSCEEEEEETT
T ss_pred EEcCCCCEEEEEccCCCCeEEEEEEc
Confidence 89999998886653 356776 65
No 196
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.30 E-value=0.0012 Score=38.59 Aligned_cols=79 Identities=11% Similarity=0.009 Sum_probs=53.2
Q ss_pred cceeEEecCCCCCEEEEEEEecCCCCcEEEEEe----------CCCCEEEEECCCCCEEEEecCCC-------CeEEEEE
Q psy6444 5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISAC----------KDGKPMLRQGDTGDWIGTFEGHK-------GCVWGVD 67 (88)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~ 67 (88)
.+.+..+.....+ . +.++ ++|+.++.+. .+..+.+||..+.+.+..+.... .....+.
T Consensus 69 ~~v~~~I~vG~~P-~-va~s---pDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a 143 (386)
T 3sjl_D 69 GRVIGMIDGGFLP-N-PVVA---DDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS 143 (386)
T ss_dssp TEEEEEEEECSSC-E-EEEC---TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEE
T ss_pred CeEEEEEECCCCC-c-EEEC---CCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEE
Confidence 4444455444444 3 8889 7998777665 35679999999888777664211 2345678
Q ss_pred ECCCCCeEEEecC--CCeEEEcC
Q psy6444 68 INKDASKAASGAA--DFQAKALK 88 (88)
Q Consensus 68 ~~~~~~~~~~~~~--d~~i~~~~ 88 (88)
++|+++++..+.. ++.+.++|
T Consensus 144 ~spDGk~lyVan~~~~~~VsVID 166 (386)
T 3sjl_D 144 LTPDGKTLLFYQFSPAPAVGVVD 166 (386)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEE
T ss_pred EcCCCCEEEEEEcCCCCeEEEEE
Confidence 9999998876653 57787765
No 197
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=97.27 E-value=0.0055 Score=35.82 Aligned_cols=66 Identities=11% Similarity=0.019 Sum_probs=48.5
Q ss_pred CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
+.. |..++|. +.+++.+ .++.+.+|++..-........+...+..+.+.+. .++.+..||.+.+||
T Consensus 87 lp~-V~~l~fd-----~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~d 152 (388)
T 1xip_A 87 IPD-VIFVCFH-----GDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALD 152 (388)
T ss_dssp CTT-EEEEEEE-----TTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEE
T ss_pred CCC-eeEEEEC-----CCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEE
Confidence 445 8888883 7788877 7789999998765544445555566777776654 277788999999985
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.26 E-value=0.0062 Score=33.11 Aligned_cols=75 Identities=13% Similarity=0.070 Sum_probs=53.3
Q ss_pred EecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEE-EecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIG-TFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
.+..+...+..+.++ ++|...++...++.+..|+.. +.... ........+..+++.+++..+++...++.+..||
T Consensus 9 ~~~~~~~~~~~i~~d---~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 84 (299)
T 2z2n_A 9 NLTNQDTGPYGITVS---DKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRIT 84 (299)
T ss_dssp ECCSSSCCEEEEEEC---TTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred cCCCcCCCccceEEC---CCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEEC
Confidence 344455678899998 788887776667889999877 54322 2223456788899999999887776677777664
No 199
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=97.21 E-value=0.008 Score=33.43 Aligned_cols=64 Identities=9% Similarity=0.139 Sum_probs=45.5
Q ss_pred CCCCCEEEEEEEecCCCCcEEEEEeCC----CCEEEEECCCCCEEEEec--CCCCeEEEEEECCCCCeEEEec
Q psy6444 13 GHTRPVVHLAFSDITESGYFLISACKD----GKPMLRQGDTGDWIGTFE--GHKGCVWGVDINKDASKAASGA 79 (88)
Q Consensus 13 ~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~ 79 (88)
.+...+..+.++ ++++.+++...+ +.+.+|+...+.....+. .....+..+.+++++..+++..
T Consensus 84 ~~~~~~~~i~~~---~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 153 (333)
T 2dg1_A 84 SHKANPAAIKIH---KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDF 153 (333)
T ss_dssp CSSSSEEEEEEC---TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCcceEEEC---CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEec
Confidence 445678899999 788887777665 578888887655432222 2345688899999998877654
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.17 E-value=0.00078 Score=41.83 Aligned_cols=62 Identities=13% Similarity=-0.012 Sum_probs=41.3
Q ss_pred CCEEEEEEEecCCCCcEEEEEeCC-C----CEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444 16 RPVVHLAFSDITESGYFLISACKD-G----KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF 82 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~ 82 (88)
..+..++|+ ++|+.++.+..+ | .+.+|++.++..+.... ....+..++|+|+ ..++.++.+.
T Consensus 163 ~~~~~~~~S---PDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~ 229 (741)
T 1yr2_A 163 TALDAWAAS---DDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAE 229 (741)
T ss_dssp EEEEEEEEC---TTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCC
T ss_pred EEEEeEEEC---CCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecC
Confidence 357788999 799988766543 3 48899998887643311 1111246789999 8887665443
No 201
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.14 E-value=0.0012 Score=37.86 Aligned_cols=58 Identities=17% Similarity=0.072 Sum_probs=39.7
Q ss_pred CCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 29 SGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
++..++.++.++.+..||..+++.+..+.. +.+....+..++..++.++.|+.+..||
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d 65 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLG 65 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEE
Confidence 467888899999999999999987766665 3333333445666777778899998886
No 202
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.07 E-value=0.014 Score=33.73 Aligned_cols=64 Identities=9% Similarity=-0.039 Sum_probs=45.7
Q ss_pred EEEEecCCCCcEEEEEeC----------CCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEec-CCCeEEEcC
Q psy6444 21 LAFSDITESGYFLISACK----------DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGA-ADFQAKALK 88 (88)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~-~d~~i~~~~ 88 (88)
+.++ +++..++.... ++.+.+.|..+.+.+..+... .....+.|+++++ .+.++. .++.+.++|
T Consensus 272 ~~~s---~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD 347 (373)
T 2mad_H 272 VAYL---KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred EEEC---CCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 5566 57766665443 246888899888877777532 3578899999999 666665 578888875
No 203
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=96.97 E-value=0.013 Score=32.90 Aligned_cols=66 Identities=11% Similarity=0.027 Sum_probs=48.0
Q ss_pred EEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 18 VVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 18 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
...+.+. .+..+++...++.+.++|..+++.+..+.. ......+++++++..+++...++.+.+||
T Consensus 46 ~~~i~~~----~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD 111 (328)
T 3dsm_A 46 AQSMVIR----DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIIN 111 (328)
T ss_dssp EEEEEEE----TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEE
T ss_pred ceEEEEE----CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEE
Confidence 4556654 456666666678899999998888777753 35678888888886665655788888775
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=96.93 E-value=0.016 Score=32.02 Aligned_cols=61 Identities=13% Similarity=0.097 Sum_probs=46.5
Q ss_pred CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEEC-CCCCeE-EEec
Q psy6444 16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN-KDASKA-ASGA 79 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~-~~~~ 79 (88)
+....+++. ++|+..++....+.|..|+..+++.+..+......+.+++|. |++..+ ++..
T Consensus 199 ~~p~g~~~d---~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 199 QIPDGMCID---AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CEEEEEEEB---TTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCeeEEC---CCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 345667787 788888877777889999988788888887777788999998 776644 4443
No 205
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=96.93 E-value=0.017 Score=32.23 Aligned_cols=63 Identities=11% Similarity=0.063 Sum_probs=42.5
Q ss_pred cCCCCCEEE-EEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 12 SGHTRPVVH-LAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 12 ~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
.++...+.. +.|+ ++ .++++..++...+| +.++.. ..+..+...+..++|++ ..+++.+.+..
T Consensus 259 ~~~~~~~~~~~~~s----dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~ 322 (347)
T 2gop_A 259 DEVDRGVGQAKIKD----GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATR 322 (347)
T ss_dssp TTCCSEEEEEEEET----TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSS
T ss_pred ccCCcccCCccEEc----Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCC
Confidence 344556665 7774 56 88888889999999 765554 33444477888999998 55555554443
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=96.90 E-value=0.017 Score=31.73 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=47.6
Q ss_pred cCCCCCEEEEEEEecCCCCcEEEE-------EeCCCCEEEEECCCCCEEEEec----CCCCeEEEEEECCC-CCeEEEec
Q psy6444 12 SGHTRPVVHLAFSDITESGYFLIS-------ACKDGKPMLRQGDTGDWIGTFE----GHKGCVWGVDINKD-ASKAASGA 79 (88)
Q Consensus 12 ~~~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~-~~~~~~~~ 79 (88)
.........++|+ +++..+++ ...++.+..|+..++....... ++...+..+.++++ +.++++..
T Consensus 14 ~~~~~~~~~~~~~---~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~ 90 (314)
T 1pjx_A 14 TEDIPGAEGPVFD---KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM 90 (314)
T ss_dssp ECCCTTCEEEEEC---TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET
T ss_pred hccCCCccCceEC---CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC
Confidence 4444556788998 78888777 5667889999877666432211 24456888999998 77666544
Q ss_pred CCCeEEEc
Q psy6444 80 ADFQAKAL 87 (88)
Q Consensus 80 ~d~~i~~~ 87 (88)
.+ .+.+|
T Consensus 91 ~~-~l~~~ 97 (314)
T 1pjx_A 91 RL-GLLVV 97 (314)
T ss_dssp TT-EEEEE
T ss_pred CC-CEEEE
Confidence 33 45544
No 207
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=96.76 E-value=0.026 Score=31.77 Aligned_cols=67 Identities=6% Similarity=-0.093 Sum_probs=46.0
Q ss_pred CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEE-E-ecCCCCeEEEEEECC-CCCeEEEe----cCCCeEEEcC
Q psy6444 17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIG-T-FEGHKGCVWGVDINK-DASKAASG----AADFQAKALK 88 (88)
Q Consensus 17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~~~~~~~-~~~~~~~~----~~d~~i~~~~ 88 (88)
....++++ ++++.++.... .+..+|..++.... . +.........++++| ++..+++. ..++.+.+||
T Consensus 226 ~p~~la~~---~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 226 WPSEVQLN---GTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp CCEEEEEC---TTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred CceeEEEe---cCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 46778888 78888877654 78889987665421 1 111235678899998 56666665 5677888875
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=96.75 E-value=0.019 Score=35.81 Aligned_cols=66 Identities=11% Similarity=-0.026 Sum_probs=41.9
Q ss_pred EEEEEEecCCCCcEEEEEeCCCC--------------EEEEECCCCC----EEEEecCCCCeEEEEEECCCCCeEEEecC
Q psy6444 19 VHLAFSDITESGYFLISACKDGK--------------PMLRQGDTGD----WIGTFEGHKGCVWGVDINKDASKAASGAA 80 (88)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 80 (88)
..++|+ ++ +.++.+..+.. +.+|++.++. .+.....+...+..+.|+|++++++..+.
T Consensus 212 ~~~~ws---pD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~ 287 (741)
T 1yr2_A 212 SGLAWL---GN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSS 287 (741)
T ss_dssp CCCEES---TT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred ccEEEE---CC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEE
Confidence 356788 68 77777766543 7788876554 22222223345788899999998875543
Q ss_pred C-----CeEEEcC
Q psy6444 81 D-----FQAKALK 88 (88)
Q Consensus 81 d-----~~i~~~~ 88 (88)
+ ..+.+||
T Consensus 288 ~~~~~~~~l~~~d 300 (741)
T 1yr2_A 288 EGTDPVNTVHVAR 300 (741)
T ss_dssp CTTCSCCEEEEEE
T ss_pred ccCCCcceEEEEE
Confidence 3 3566654
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=96.74 E-value=0.0048 Score=36.46 Aligned_cols=80 Identities=16% Similarity=0.038 Sum_probs=52.5
Q ss_pred ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEe----------CCCCEEEEECCCCCEEEEecCC-------CCeEEEE
Q psy6444 4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISAC----------KDGKPMLRQGDTGDWIGTFEGH-------KGCVWGV 66 (88)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~ 66 (88)
+.+.+.++.....+ .+.++ ++++.++.+. .++.+.++|..+.+.+..+... ......+
T Consensus 108 t~~vv~~I~vG~~P--gia~S---pDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~ 182 (426)
T 3c75_H 108 TGRILGMTDGGFLP--HPVAA---EDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMN 182 (426)
T ss_dssp TTEEEEEEEECSSC--EEEEC---TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGS
T ss_pred CCEEEEEEECCCCC--ceEEC---CCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceE
Confidence 34444455444445 68889 7898777665 3567999999888877666421 1223457
Q ss_pred EECCCCCeEEEecC--CCeEEEcC
Q psy6444 67 DINKDASKAASGAA--DFQAKALK 88 (88)
Q Consensus 67 ~~~~~~~~~~~~~~--d~~i~~~~ 88 (88)
.++|+++++..+.. ++.+.+.|
T Consensus 183 ~~spDGk~lyV~n~~~~~~VsVID 206 (426)
T 3c75_H 183 ALTPDNKNLLFYQFSPAPAVGVVD 206 (426)
T ss_dssp EECTTSSEEEEEECSSSCEEEEEE
T ss_pred EEcCCCCEEEEEecCCCCeEEEEE
Confidence 88999998876653 46676654
No 210
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=96.68 E-value=0.0036 Score=38.75 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=40.4
Q ss_pred CCCCEEEEEEEecCCCCcEEEEEeC-C----CCEEEEECCCCCEEEE-ecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444 14 HTRPVVHLAFSDITESGYFLISACK-D----GKPMLRQGDTGDWIGT-FEGHKGCVWGVDINKDASKAASGAAD 81 (88)
Q Consensus 14 ~~~~v~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~d 81 (88)
+...+..++|+ ++|+.++.+.. . ..+.++|+.++..+.. +... ....++|+ |++.++.++.+
T Consensus 127 ~~~~l~~~~~S---pDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~ 194 (693)
T 3iuj_A 127 GTTALDQLSFS---RDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYD 194 (693)
T ss_dssp SCCEEEEEEEC---TTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESS
T ss_pred CcEEEEEEEEC---CCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEec
Confidence 44567788999 79987774332 2 4588999998875432 1111 12456899 99988766555
No 211
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.57 E-value=0.031 Score=30.34 Aligned_cols=70 Identities=11% Similarity=0.043 Sum_probs=48.7
Q ss_pred CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCE-EEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDW-IGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
...+..+.++ +++...++...++.+..|+.. +.. ..........+..+.+.+++..+++...++.+..||
T Consensus 56 ~~~~~~i~~~---~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d 126 (299)
T 2z2n_A 56 DAKVMCLTIS---SDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRIT 126 (299)
T ss_dssp TCCEEEEEEC---TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred cCceeeEEEC---CCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEEC
Confidence 4567788888 788877777667778888875 332 122222445778899999998887776677777664
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.53 E-value=0.045 Score=31.95 Aligned_cols=67 Identities=13% Similarity=-0.037 Sum_probs=45.1
Q ss_pred CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC--eEEEc
Q psy6444 16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF--QAKAL 87 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~--~i~~~ 87 (88)
.....++++ ++++.+++...++.|..|+...+........ ..... ++|++++..++.+..++ .+.++
T Consensus 131 ~~P~~la~d---~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~ 199 (409)
T 3hrp_A 131 KYMWGIAAV---GNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVY 199 (409)
T ss_dssp CCEEEEEEC---STTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEE
T ss_pred CCceEEEEe---CCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEE
Confidence 356788898 7888777777778899999876554333333 22233 88999998777666544 45443
No 213
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=96.44 E-value=0.034 Score=32.25 Aligned_cols=64 Identities=6% Similarity=-0.065 Sum_probs=45.1
Q ss_pred EEEEecCCCCcEEEEEeC-C--------CCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCe-EEEec-CCCeEEEcC
Q psy6444 21 LAFSDITESGYFLISACK-D--------GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASK-AASGA-ADFQAKALK 88 (88)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~-~d~~i~~~~ 88 (88)
+.++ +++..++.+.. . ..+.++|..+.+.+..+... .....+.+++++.. +.+.. .++.+.++|
T Consensus 269 v~~s---~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 269 VAKL---KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp EEEE---TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred eEEc---CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 5678 68776665432 2 24569999988877777643 25788999999984 45555 588888875
No 214
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=96.44 E-value=0.02 Score=33.55 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=43.3
Q ss_pred CCCcEEEEEeC-----CCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEec----------CCCeEEEcC
Q psy6444 28 ESGYFLISACK-----DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGA----------ADFQAKALK 88 (88)
Q Consensus 28 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~d~~i~~~~ 88 (88)
+++..++.... ++.+.+.|..+.+.+..+...... .+.++|++..+..+. .++.+.+||
T Consensus 42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 67877777655 467889999888888777654443 389999999776543 356688776
No 215
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=96.35 E-value=0.022 Score=33.70 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=46.5
Q ss_pred EEEEecCCCCcEEEEEeC----------CCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEec-CCCeEEEcC
Q psy6444 21 LAFSDITESGYFLISACK----------DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGA-ADFQAKALK 88 (88)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~-~d~~i~~~~ 88 (88)
+.++ +++..++.... ++.+.+.|..+.+.+..+... ...+.+.|+++++ .+.+.. .++.+.++|
T Consensus 324 va~s---~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID 399 (426)
T 3c75_H 324 TAYH---RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYD 399 (426)
T ss_dssp EEEE---GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred eEEc---CCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence 5677 57766665432 246889999988888777642 3578899999998 777666 588888875
No 216
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=96.15 E-value=0.06 Score=29.20 Aligned_cols=71 Identities=11% Similarity=-0.032 Sum_probs=50.7
Q ss_pred CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEE-EecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIG-TFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
.......+.+. ++|...++...++.+..++.. +.... ........+..+.+.+++..+++...++.+..+|
T Consensus 18 ~~~~p~~i~~d---~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 18 PDSGPYGITSS---EDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLS 89 (300)
T ss_dssp TTCCEEEEEEC---TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCCcceeeEC---CCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEEC
Confidence 44567888888 788888877677889999876 54332 2223346788899999998887766667777664
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=95.91 E-value=0.087 Score=29.07 Aligned_cols=71 Identities=14% Similarity=-0.012 Sum_probs=47.2
Q ss_pred ecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444 11 CSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKAL 87 (88)
Q Consensus 11 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~ 87 (88)
+.....-...+.|+| .++..+++...++.+..|+...+.. ..+. ....+.++.+++++.++++. +..+.+|
T Consensus 8 ~~~~~~~~Egp~w~~--~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~ 78 (297)
T 3g4e_A 8 LPENCRCGESPVWEE--VSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVATI--GTKFCAL 78 (297)
T ss_dssp ECCCCSBEEEEEEET--TTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEE
T ss_pred eccCCccccCCeEEC--CCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEEE--CCeEEEE
Confidence 334445567889994 3556777777778899999876654 2232 34578889999999966653 3445544
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=95.87 E-value=0.12 Score=30.22 Aligned_cols=67 Identities=13% Similarity=0.039 Sum_probs=49.2
Q ss_pred CEEEEEEEecCCCCcEEEEEe-CCCCEEEEECCCCCEEEEecCC---------------CCeEEEEEECCCCCeEEEecC
Q psy6444 17 PVVHLAFSDITESGYFLISAC-KDGKPMLRQGDTGDWIGTFEGH---------------KGCVWGVDINKDASKAASGAA 80 (88)
Q Consensus 17 ~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~~~~~~~~~~~~ 80 (88)
....++++ ++|+.+++-. .++.|..|+..++. +..+.++ ......+++++++.++++-..
T Consensus 324 ~P~gia~d---~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~ 399 (409)
T 3hrp_A 324 QPNGMTVD---EDGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW 399 (409)
T ss_dssp SEEEEEEC---TTCCEEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST
T ss_pred CCeEEEEe---CCCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC
Confidence 36678888 7898777777 77889999976565 3333332 245788999999888888778
Q ss_pred CCeEEEc
Q psy6444 81 DFQAKAL 87 (88)
Q Consensus 81 d~~i~~~ 87 (88)
++.|+.+
T Consensus 400 n~~Ir~i 406 (409)
T 3hrp_A 400 GKAIRKY 406 (409)
T ss_dssp TCEEEEE
T ss_pred CCeEEEE
Confidence 8888754
No 219
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=95.78 E-value=0.094 Score=28.42 Aligned_cols=70 Identities=10% Similarity=-0.009 Sum_probs=47.7
Q ss_pred CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEE-ecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGT-FEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
...+..+.+. +++...++....+.+..++. .+..... .......+..+.+.+++..+++...++.|..+|
T Consensus 187 ~~~~~~i~~d---~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 187 AAAPVGITSG---NDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRIT 257 (300)
T ss_dssp TCCEEEEEEC---TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred CCCcceEEEC---CCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence 3456778888 67877776666667888887 4443322 233456678899999998777766667776654
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=95.47 E-value=0.15 Score=28.76 Aligned_cols=72 Identities=7% Similarity=-0.099 Sum_probs=46.3
Q ss_pred CCCCEEEEEEEecCCCCcEEEEEeC-----CCCEEEEECCCCCEEEEecCC------CCeEEEEEECCC-CCeEEEec--
Q psy6444 14 HTRPVVHLAFSDITESGYFLISACK-----DGKPMLRQGDTGDWIGTFEGH------KGCVWGVDINKD-ASKAASGA-- 79 (88)
Q Consensus 14 ~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~-~~~~~~~~-- 79 (88)
+...+..++++ ++++.++.-.. +..+..||..+++.+..+... ......++++++ +..+++-.
T Consensus 65 ~~~~p~gv~~d---~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~ 141 (343)
T 2qe8_A 65 TFDTVLGIKSD---GNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP 141 (343)
T ss_dssp CCSCEEEEEEC---SSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred ceeEeeEEEEc---CCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc
Confidence 45678899998 67876554432 467889998877765555321 234577888875 44455544
Q ss_pred -CCCeEEEcC
Q psy6444 80 -ADFQAKALK 88 (88)
Q Consensus 80 -~d~~i~~~~ 88 (88)
.++.+.+||
T Consensus 142 ~~~~~i~v~d 151 (343)
T 2qe8_A 142 DDKAALIRVD 151 (343)
T ss_dssp GGGCEEEEEE
T ss_pred CCCCeEEEEE
Confidence 556666654
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=95.28 E-value=0.1 Score=29.45 Aligned_cols=59 Identities=2% Similarity=-0.094 Sum_probs=41.4
Q ss_pred EEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecC-CCCeEEEEEECCCCCeEEEecC
Q psy6444 19 VHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEG-HKGCVWGVDINKDASKAASGAA 80 (88)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~ 80 (88)
..++++ ++|..+++...++.|..|+..++........ .......+++.+++.++++.+.
T Consensus 251 dgia~d---~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 251 DGISID---KDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp SCEEEC---TTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred ceEEEC---CCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence 346777 7888888888888999999844543222221 2456788999999888777653
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=94.81 E-value=0.25 Score=27.69 Aligned_cols=69 Identities=17% Similarity=0.022 Sum_probs=44.1
Q ss_pred CEEEEEEEecCCCCcEEEE-EeCCCCEEEEECC--CC-C-----EEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444 17 PVVHLAFSDITESGYFLIS-ACKDGKPMLRQGD--TG-D-----WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKAL 87 (88)
Q Consensus 17 ~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~-~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~ 87 (88)
....++|+ ++++.++. ...++.|.+|+.. ++ . ....+.........+.+.+++.++++...++.|..|
T Consensus 180 ~~~~i~~s---~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~ 256 (326)
T 2ghs_A 180 IPNSICFS---PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRY 256 (326)
T ss_dssp SEEEEEEC---TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred ccCCeEEc---CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEE
Confidence 34567888 78876554 4456778899875 44 2 122233334566788899999877766555667766
Q ss_pred C
Q psy6444 88 K 88 (88)
Q Consensus 88 ~ 88 (88)
|
T Consensus 257 d 257 (326)
T 2ghs_A 257 D 257 (326)
T ss_dssp C
T ss_pred C
Confidence 4
No 223
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=94.58 E-value=0.17 Score=31.47 Aligned_cols=66 Identities=12% Similarity=-0.108 Sum_probs=45.8
Q ss_pred EEEEEEecCCCCcEEEEEeC-CCCEEEEECCCCC------------EEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444 19 VHLAFSDITESGYFLISACK-DGKPMLRQGDTGD------------WIGTFEGHKGCVWGVDINKDASKAASGAADFQAK 85 (88)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~ 85 (88)
..+.++ ++|++++.++. +..+.++++.+.. ...... -....++++|+++|..+.+.-.|+.+.
T Consensus 280 hGv~~s---PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~ 355 (595)
T 1fwx_A 280 HGCNMA---PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVV 355 (595)
T ss_dssp CCEEEC---TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEE
T ss_pred eEEEEc---CCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEE
Confidence 457788 79987776554 5679999987432 222222 335678899999995555667888888
Q ss_pred EcC
Q psy6444 86 ALK 88 (88)
Q Consensus 86 ~~~ 88 (88)
+||
T Consensus 356 kwd 358 (595)
T 1fwx_A 356 KWN 358 (595)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=94.47 E-value=0.26 Score=27.26 Aligned_cols=65 Identities=9% Similarity=0.043 Sum_probs=37.0
Q ss_pred EEEEEEEecCCCCcEEEE----EeC-------------CCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecC
Q psy6444 18 VVHLAFSDITESGYFLIS----ACK-------------DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAA 80 (88)
Q Consensus 18 v~~~~~~~~~~~~~~~~~----~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 80 (88)
+..+.++ ++|...++ +.. .+.+..++..++..... . .......++|+|++..+..+..
T Consensus 133 ~~~i~~d---~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~-~-~~~~p~gl~~spdg~~lyv~~~ 207 (305)
T 3dr2_A 133 PNDLIVA---RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM-A-DLDHPNGLAFSPDEQTLYVSQT 207 (305)
T ss_dssp CCCEEEC---TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE-E-EESSEEEEEECTTSSEEEEEEC
T ss_pred CCCEEEC---CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE-e-cCCCCcceEEcCCCCEEEEEec
Confidence 3457777 68887775 221 13355555544443222 2 3345678899999986654433
Q ss_pred C------CeEEEc
Q psy6444 81 D------FQAKAL 87 (88)
Q Consensus 81 d------~~i~~~ 87 (88)
. +.|.+|
T Consensus 208 ~~~~~~~~~i~~~ 220 (305)
T 3dr2_A 208 PEQGHGSVEITAF 220 (305)
T ss_dssp CC---CCCEEEEE
T ss_pred CCcCCCCCEEEEE
Confidence 3 566655
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=94.31 E-value=0.35 Score=27.14 Aligned_cols=57 Identities=14% Similarity=0.028 Sum_probs=41.4
Q ss_pred CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEEC-CCCCeEE
Q psy6444 16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN-KDASKAA 76 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~ 76 (88)
.....+.+. ++|...++...++.+..|+. .+..+..+......+.+++|. +++..++
T Consensus 230 ~~p~gi~~d---~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~ 287 (326)
T 2ghs_A 230 GGMDGSVCD---AEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLL 287 (326)
T ss_dssp SEEEEEEEC---TTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred CCCCeeEEC---CCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEE
Confidence 345567777 78887777666677888887 567667776666678999998 7776554
No 226
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=93.34 E-value=0.013 Score=33.64 Aligned_cols=55 Identities=13% Similarity=0.016 Sum_probs=23.8
Q ss_pred CcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 30 GYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
+..++.++.++.+..||..+++.+..+..+. ...++|++..++.++.++.+..||
T Consensus 92 ~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d 146 (369)
T 2hz6_A 92 DGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYD 146 (369)
T ss_dssp ---CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCC
T ss_pred CCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEE
Confidence 4456667777889999988887665554432 123455667777777788888775
No 227
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.29 E-value=0.77 Score=27.71 Aligned_cols=71 Identities=7% Similarity=-0.021 Sum_probs=49.0
Q ss_pred CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC--EE--------EEecCCCCeEEEEEECCCCCeEEE--ecCCC
Q psy6444 15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--WI--------GTFEGHKGCVWGVDINKDASKAAS--GAADF 82 (88)
Q Consensus 15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~i~~~~~~~~~~~~~~--~~~d~ 82 (88)
..+|..+.|+|....+..++.-..|+.|++||+.... .. .........+.+++|..++-.+.. ...+|
T Consensus 124 ~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~G 203 (452)
T 3pbp_A 124 KSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGG 203 (452)
T ss_dssp CCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSC
T ss_pred CCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCC
Confidence 4679999999866667799999999999999997522 11 111222356778888887665544 44666
Q ss_pred eEE
Q psy6444 83 QAK 85 (88)
Q Consensus 83 ~i~ 85 (88)
.|.
T Consensus 204 DIY 206 (452)
T 3pbp_A 204 DIF 206 (452)
T ss_dssp EEE
T ss_pred CEE
Confidence 654
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=92.65 E-value=0.53 Score=29.55 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=36.4
Q ss_pred CCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeE-EEEEECCCCCeEEE
Q psy6444 28 ESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCV-WGVDINKDASKAAS 77 (88)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~ 77 (88)
..+..++.++.|+.++.||..+++.+..+....+.. .-+.+..+|.+++.
T Consensus 484 tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 484 TAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred ECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 467788999999999999999999887776432211 23455667776654
No 229
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=92.14 E-value=1.1 Score=26.49 Aligned_cols=66 Identities=8% Similarity=0.022 Sum_probs=40.7
Q ss_pred EEEEEEecCC-CCcEEEEEeCCCCEEEEECCCCCEEEEec-CCCCeEEEEEECCCCC-eEEEecCCCeEEEc
Q psy6444 19 VHLAFSDITE-SGYFLISACKDGKPMLRQGDTGDWIGTFE-GHKGCVWGVDINKDAS-KAASGAADFQAKAL 87 (88)
Q Consensus 19 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~~d~~i~~~ 87 (88)
..++++ + ++..+++-..++.|..++...+....... ........++++|++. .+++-...+.|..+
T Consensus 229 ~giavd---p~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~ 297 (430)
T 3tc9_A 229 NGAETH---PINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRS 297 (430)
T ss_dssp CCEEEC---TTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEe---CCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEE
Confidence 345667 5 67766666666778888876444312221 1224467899999998 45555566666654
No 230
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=91.60 E-value=0.95 Score=27.35 Aligned_cols=68 Identities=16% Similarity=0.025 Sum_probs=47.2
Q ss_pred CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC------------EEEEecC------CCCeEEEEEECCC---CCeE
Q psy6444 17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD------------WIGTFEG------HKGCVWGVDINKD---ASKA 75 (88)
Q Consensus 17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~------~~~~i~~~~~~~~---~~~~ 75 (88)
.+..+..+ ++|.+++..+.. .+.+..++.+. ..+.+.- ....|..+.|+|- +..+
T Consensus 67 ~i~qlvlS---psG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~L 142 (452)
T 3pbp_A 67 DTFHVISS---TSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCI 142 (452)
T ss_dssp TTCEEEEC---TTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEE
T ss_pred ceeEEEEC---CCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeE
Confidence 45667888 799999887654 67777776322 1112221 2467999999995 4477
Q ss_pred EEecCCCeEEEcC
Q psy6444 76 ASGAADFQAKALK 88 (88)
Q Consensus 76 ~~~~~d~~i~~~~ 88 (88)
+.-..|+.||+||
T Consensus 143 VVLtsD~~Ir~yD 155 (452)
T 3pbp_A 143 VVLKEDDTITMFD 155 (452)
T ss_dssp EEEETTSCEEEEE
T ss_pred EEEecCCEEEEEE
Confidence 7888999999996
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=91.22 E-value=1.6 Score=26.52 Aligned_cols=57 Identities=5% Similarity=-0.063 Sum_probs=40.3
Q ss_pred EEEEEecCCCCcEEEEEe-------------------CCCCEEEEECCCCCEEEEecCC-C-CeEEEEEE--CCCCCeEE
Q psy6444 20 HLAFSDITESGYFLISAC-------------------KDGKPMLRQGDTGDWIGTFEGH-K-GCVWGVDI--NKDASKAA 76 (88)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~-~-~~i~~~~~--~~~~~~~~ 76 (88)
.+.|+ ++++.+++.. ....|.+|+..+++.+..+... . .....++| +|++.+..
T Consensus 192 d~~~~---p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aY 268 (462)
T 2ece_A 192 DFWWN---LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGF 268 (462)
T ss_dssp CEEEE---TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEE
T ss_pred eEEEC---CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEE
Confidence 46678 7888888874 3568999999887777766552 2 34456666 99988776
Q ss_pred Eec
Q psy6444 77 SGA 79 (88)
Q Consensus 77 ~~~ 79 (88)
.++
T Consensus 269 V~~ 271 (462)
T 2ece_A 269 INM 271 (462)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 232
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=91.19 E-value=1.2 Score=25.02 Aligned_cols=56 Identities=11% Similarity=-0.038 Sum_probs=36.3
Q ss_pred CcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 30 GYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
...+.....++.+.++|..+.+.+..+.... .-+.++ +++..++.+..+..+.++|
T Consensus 106 ~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iD 161 (268)
T 3nok_A 106 ERLYQLTWTEGLLFTWSGMPPQRERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHE 161 (268)
T ss_dssp SCEEEEESSSCEEEEEETTTTEEEEEEECSS-CCCCEE--EETTEEEEECSSSEEEEEC
T ss_pred CEEEEEEccCCEEEEEECCcCcEEEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEc
Confidence 4555556667889999999888887776532 223333 3566665555577777765
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=91.17 E-value=1 Score=24.30 Aligned_cols=67 Identities=9% Similarity=-0.002 Sum_probs=39.4
Q ss_pred EEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEecCCCeEEEc
Q psy6444 18 VVHLAFSDITESG-YFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGAADFQAKAL 87 (88)
Q Consensus 18 v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~i~~~ 87 (88)
...++++ +++ ..+++-..++.|..++...................+++.+++. .+++-...+.|.++
T Consensus 38 ~~gi~~d---~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~ 106 (267)
T 1npe_A 38 IIGLAFD---CVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVA 106 (267)
T ss_dssp EEEEEEE---TTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEEEe---cCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEE
Confidence 4577888 544 4555555567888888764433222322334667888888644 44454555566543
No 234
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=91.03 E-value=1.2 Score=24.69 Aligned_cols=73 Identities=18% Similarity=0.141 Sum_probs=47.6
Q ss_pred EecCCCCCEEEEEEEecCCCCcEEE-EEeCCCCEEEEECCCCCEEEEecC-CCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444 10 TCSGHTRPVVHLAFSDITESGYFLI-SACKDGKPMLRQGDTGDWIGTFEG-HKGCVWGVDINKDASKAASGAADFQAKA 86 (88)
Q Consensus 10 ~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~d~~i~~ 86 (88)
.+.+-...+..++|+ ++++.++ ....++.+...+.. ++.+..+.- -..-.-.+++.+++.++++.-.++.+.+
T Consensus 21 ~l~g~~~~lSGla~~---~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 21 EIAGITNNISSLTWS---AQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYV 95 (255)
T ss_dssp ECTTCCSCEEEEEEE---TTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred ECCCcccCcceeEEe---CCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEE
Confidence 456666789999999 5665555 46666677777876 776666632 2244566777777776666545555544
No 235
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=90.76 E-value=1.2 Score=24.58 Aligned_cols=68 Identities=12% Similarity=0.050 Sum_probs=46.4
Q ss_pred CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCC---------CCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444 16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGH---------KGCVWGVDINKDASKAASGAADFQAKA 86 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~~~~~~~d~~i~~ 86 (88)
..+..++++| ..+.+++....++.+..+|.. +..+..+.-. ..+.-.+++.++|..+++ ++...+..
T Consensus 173 ~d~S~l~~dp--~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~ 248 (255)
T 3qqz_A 173 DDVSGAEFNQ--QKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYR 248 (255)
T ss_dssp SCCCEEEEET--TTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEE
T ss_pred CCceeEEEcC--CCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEE
Confidence 3567889997 667777777777778888865 5544444322 236688999999997776 55555554
Q ss_pred c
Q psy6444 87 L 87 (88)
Q Consensus 87 ~ 87 (88)
+
T Consensus 249 f 249 (255)
T 3qqz_A 249 F 249 (255)
T ss_dssp E
T ss_pred E
Confidence 3
No 236
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=89.22 E-value=2.8 Score=26.27 Aligned_cols=61 Identities=13% Similarity=0.112 Sum_probs=35.1
Q ss_pred EecCCCCCEEEEEEEecCCCCcEEEEE-eCCC--CEEEEECCCCCEEEEecC-CCCeEEEEEECCCCCeEE
Q psy6444 10 TCSGHTRPVVHLAFSDITESGYFLISA-CKDG--KPMLRQGDTGDWIGTFEG-HKGCVWGVDINKDASKAA 76 (88)
Q Consensus 10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~ 76 (88)
.+..|...+. .|+ ++++.++.. ..++ .+.+|+.. +.....+.. ..+.+..+.+++++..++
T Consensus 322 ~l~~~~~~~~--~~s---~~g~~lv~~~~~~g~~~l~~~d~~-g~~~~~l~~p~~~~~~~~~~~~d~~~l~ 386 (693)
T 3iuj_A 322 DLIPERQQVL--TVH---SGSGYLFAEYMVDATARVEQFDYE-GKRVREVALPGLGSVSGFNGKHDDPALY 386 (693)
T ss_dssp EEECCCSSCE--EEE---EETTEEEEEEEETTEEEEEEECTT-SCEEEEECCSSSSEEEECCCCTTCSCEE
T ss_pred EEecCCCCEE--EEE---EECCEEEEEEEECCeeEEEEEECC-CCeeEEeecCCCceEEeeecCCCCCEEE
Confidence 4455555554 777 467665544 4454 46777776 444444432 335566667777776554
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=88.93 E-value=1.9 Score=24.02 Aligned_cols=56 Identities=11% Similarity=0.056 Sum_probs=34.8
Q ss_pred cEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 31 YFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
...+....++.+.++|..+.+.+..+......-+. +++++..++.+..++.+.++|
T Consensus 77 ~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD 132 (266)
T 2iwa_A 77 KLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWG--LATDGKILYGSDGTSILYEID 132 (266)
T ss_dssp EEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCE--EEECSSSEEEECSSSEEEEEC
T ss_pred EEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEE--EEECCCEEEEECCCCeEEEEE
Confidence 44455556778999999888877777532111133 344666555555677787765
No 238
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=88.68 E-value=0.95 Score=28.41 Aligned_cols=48 Identities=15% Similarity=0.022 Sum_probs=29.5
Q ss_pred CCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 40 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
+.+.-||..+++.+-..... .......+...+..++.++.|+.+++||
T Consensus 457 g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred cEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 56777888877765444322 1222223444566677778889888875
No 239
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=88.66 E-value=2.1 Score=24.06 Aligned_cols=64 Identities=13% Similarity=0.015 Sum_probs=41.1
Q ss_pred EEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeE--EEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 18 VVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCV--WGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 18 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
..-+.|+ ++.++.+.+.++.+..+|..+++.+... -. ... -.+.+..+ ..+.....++.+.++|
T Consensus 57 tqGL~~~----~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 57 TQGLVFH----QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGE-RLYQLTWTEGLLFTWS 122 (268)
T ss_dssp EEEEEEE----TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSS-CEEEEESSSCEEEEEE
T ss_pred cceEEEE----CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCC-EEEEEEccCCEEEEEE
Confidence 4677776 4678888888888999999988876665 22 222 22444432 3333455667777664
No 240
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=88.64 E-value=2.3 Score=24.65 Aligned_cols=69 Identities=6% Similarity=-0.021 Sum_probs=35.0
Q ss_pred CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCC-CCeEEEecCCCeEEE
Q psy6444 16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD-ASKAASGAADFQAKA 86 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~i~~ 86 (88)
.....++|++ .++..+.+-...+.|..++...+...............+++.+. +.++++-...+.|.+
T Consensus 116 ~~~~gl~~d~--~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~ 185 (386)
T 3v65_B 116 ENAIALDFHH--RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEV 185 (386)
T ss_dssp SCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEE
T ss_pred CccEEEEEec--CCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEE
Confidence 4466788883 34445555555667777777644432222222223344566553 344445444445544
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=88.27 E-value=2.2 Score=23.82 Aligned_cols=59 Identities=8% Similarity=-0.160 Sum_probs=36.8
Q ss_pred CCCcEEEEEeCCCCEEEEECCCCCEEEEecCCC-----CeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444 28 ESGYFLISACKDGKPMLRQGDTGDWIGTFEGHK-----GCVWGVDINKDASKAASGAADFQAKAL 87 (88)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~d~~i~~~ 87 (88)
++|+.++.+..++.+.+.|..+.+.+..+.... ...+.+.+. ++..++....+..|.+.
T Consensus 114 ~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI 177 (266)
T 2iwa_A 114 TDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI 177 (266)
T ss_dssp ECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred ECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence 466655555556788888988777666665322 135566776 66666665555666543
No 242
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=88.13 E-value=2.7 Score=26.73 Aligned_cols=55 Identities=11% Similarity=-0.065 Sum_probs=33.2
Q ss_pred EEEEEecCCCCcEEEEEeCCC-----CEEEEECCCCC--EEEEec-CCCCeEEEEEECCCCCeEEE
Q psy6444 20 HLAFSDITESGYFLISACKDG-----KPMLRQGDTGD--WIGTFE-GHKGCVWGVDINKDASKAAS 77 (88)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~-~~~~~i~~~~~~~~~~~~~~ 77 (88)
.+.|+ ++++.++....+. .|..+++.++. ....+. ........+.|+|++++++-
T Consensus 225 ~~~Ws---pDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~ 287 (751)
T 2xe4_A 225 EIVWG---PDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCI 287 (751)
T ss_dssp CCEEC---SSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEE
T ss_pred eEEEe---cCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEE
Confidence 46788 7887776665542 35566765542 112222 22234567889999998764
No 243
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=88.01 E-value=2.9 Score=25.44 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=35.2
Q ss_pred CCCcEEEEEeCC------CCEEEEECCCCCEEEEecCCCC---eEEEEEECCCCCeEEEec
Q psy6444 28 ESGYFLISACKD------GKPMLRQGDTGDWIGTFEGHKG---CVWGVDINKDASKAASGA 79 (88)
Q Consensus 28 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~ 79 (88)
++| .++++..+ +.+.+.|..+.+.+..+..... .-..+.|+|+++.++++.
T Consensus 147 pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~ 206 (462)
T 2ece_A 147 PDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSE 206 (462)
T ss_dssp SSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECB
T ss_pred CCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEcc
Confidence 677 77766555 6788999888888777763211 123467799999888774
No 244
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=87.62 E-value=2.6 Score=24.07 Aligned_cols=69 Identities=6% Similarity=-0.021 Sum_probs=34.3
Q ss_pred CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCC-CCeEEEecCCCeEEE
Q psy6444 16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD-ASKAASGAADFQAKA 86 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~i~~ 86 (88)
.....++|++ .++..+.+-...+.|..++...+...............+++.+. +..+++-...+.|.+
T Consensus 73 ~~~~~l~~d~--~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~ 142 (349)
T 3v64_C 73 ENAIALDFHH--RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEV 142 (349)
T ss_dssp SCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred CceEEEEEec--cccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEE
Confidence 3456788883 34444445455667777777644322222222233345566553 444445444444443
No 245
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=87.49 E-value=1.6 Score=27.52 Aligned_cols=48 Identities=15% Similarity=-0.025 Sum_probs=30.7
Q ss_pred CCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 40 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
+.+.-||..+++.+-....+.. .....+...+.+++.++.|+.++.||
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred eeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEE
Confidence 5577888888876655543321 11223344566777788999999886
No 246
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=87.30 E-value=3.5 Score=25.22 Aligned_cols=66 Identities=8% Similarity=0.007 Sum_probs=39.5
Q ss_pred EEEEEecCCCCcEEEEEeCCCCEEEEECC-------CCCE-----------EEE-e-cCCCCeEEEEEECCCCC-eEEEe
Q psy6444 20 HLAFSDITESGYFLISACKDGKPMLRQGD-------TGDW-----------IGT-F-EGHKGCVWGVDINKDAS-KAASG 78 (88)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-----------~~~-~-~~~~~~i~~~~~~~~~~-~~~~~ 78 (88)
.++.+| .++.++++-..++.+..++.. ++.. ... + .........++++|++. .+++-
T Consensus 251 giavdp--~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD 328 (496)
T 3kya_A 251 GATIHP--INGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV 328 (496)
T ss_dssp CEEECT--TTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred EEEEcC--CCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence 345663 355666667677778888875 3332 111 1 12234457899999998 45555
Q ss_pred cCCCeEEEc
Q psy6444 79 AADFQAKAL 87 (88)
Q Consensus 79 ~~d~~i~~~ 87 (88)
...+.|+.+
T Consensus 329 ~~~h~I~ki 337 (496)
T 3kya_A 329 INNHYFMRS 337 (496)
T ss_dssp TTTTEEEEE
T ss_pred CCCCEEEEE
Confidence 566666653
No 247
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=86.93 E-value=2.7 Score=23.49 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=34.0
Q ss_pred cEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 31 YFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
........++.+.++|..+.+.+..+.... .-+.++ +++..++.+..+..+.++|
T Consensus 98 ~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iD 152 (262)
T 3nol_A 98 KIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLD 152 (262)
T ss_dssp EEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEEC
T ss_pred EEEEEEeeCCEEEEEECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEc
Confidence 444455567789999999888888776532 112333 3555555544466677665
No 248
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=85.92 E-value=3 Score=26.24 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=34.7
Q ss_pred CCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCC-eEEEEEECCCCCeEEE
Q psy6444 28 ESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKG-CVWGVDINKDASKAAS 77 (88)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~ 77 (88)
..+..++.++.++.+..||..+++.+..+....+ ...-+.+..++.+++.
T Consensus 486 ~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 486 TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred eCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 4667888889999999999999998887764321 1123445567765543
No 249
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=85.05 E-value=3.3 Score=22.73 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=23.7
Q ss_pred CCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEE
Q psy6444 29 SGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAAS 77 (88)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 77 (88)
++. +..+..++.+..++.. +.....+......+..+...+++..++.
T Consensus 147 ~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~ 193 (330)
T 3hxj_A 147 DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFG 193 (330)
T ss_dssp TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEE
T ss_pred CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEE
Confidence 444 4445555667777766 5544444333333344444455554443
No 250
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=84.92 E-value=4.4 Score=24.04 Aligned_cols=63 Identities=10% Similarity=-0.030 Sum_probs=36.9
Q ss_pred EEEEecCC-CCcEEEEEeCCCCEEEEECCCCCEEEEe-c-CCCCeEEEEEECCCCC-eEEEecCCCeEEE
Q psy6444 21 LAFSDITE-SGYFLISACKDGKPMLRQGDTGDWIGTF-E-GHKGCVWGVDINKDAS-KAASGAADFQAKA 86 (88)
Q Consensus 21 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~~~~~~~~~~-~~~~~~~d~~i~~ 86 (88)
++++ + ++..+++-..++.+..++..++.....+ . +.......++++|++. ++++-...+.|+.
T Consensus 233 iavd---~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~ 299 (433)
T 4hw6_A 233 CAVH---PQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYR 299 (433)
T ss_dssp CEEC---TTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEe---CCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEE
Confidence 5556 4 6666666555667777777655542222 1 1122334689999998 5555556666665
No 251
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.83 E-value=5 Score=26.52 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=29.4
Q ss_pred CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEe
Q psy6444 17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTF 56 (88)
Q Consensus 17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (88)
.+.++... ++..++++-+.|+.+++|++.++..+...
T Consensus 237 ~~~~~~~~---~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFL---STYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEE---TTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeec---CCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 45666666 67789999999999999999888766543
No 252
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=83.84 E-value=3.2 Score=23.49 Aligned_cols=57 Identities=11% Similarity=-0.014 Sum_probs=35.1
Q ss_pred CcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEE-EEECCCCCeEEEecCCCeEEEcC
Q psy6444 30 GYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWG-VDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
+..++.+..++.+..++..+++.+.........+.. ... .+..+..++.++.+..|+
T Consensus 318 ~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 318 NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 356777778888999998888876655542222211 111 134555667788887664
No 253
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=83.32 E-value=4.9 Score=23.36 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=42.3
Q ss_pred EEEEEEEecCCCCcEEEEEeCC-CCEEEEECCCCCEEEEec--C----CCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444 18 VVHLAFSDITESGYFLISACKD-GKPMLRQGDTGDWIGTFE--G----HKGCVWGVDINKDASKAASGAADFQAKAL 87 (88)
Q Consensus 18 v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~----~~~~i~~~~~~~~~~~~~~~~~d~~i~~~ 87 (88)
...++.. ++|+..++.+.. +.|...+.. +..+..+. . .......+.++|++..++....++.+..+
T Consensus 139 ~nDvavD---~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~f 211 (334)
T 2p9w_A 139 VVQSAQD---RDGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAF 211 (334)
T ss_dssp EEEEEEC---TTSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEE
T ss_pred CceeEEC---CCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEE
Confidence 5677788 789998888777 666655554 33222221 1 11224588999999888766557776654
No 254
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=83.13 E-value=3.3 Score=22.87 Aligned_cols=64 Identities=13% Similarity=-0.126 Sum_probs=35.8
Q ss_pred CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEE-----EEecC--CCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444 17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWI-----GTFEG--HKGCVWGVDINKDASKAASGAADFQAKAL 87 (88)
Q Consensus 17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~i~~~~~~~~~~~~~~~~~d~~i~~~ 87 (88)
.+.+++|+ |+|.+.+. .++.+.-.+..+.... ....+ --....++-|.+++.++++ .|+.|.-+
T Consensus 42 ~~~~laf~---P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~ 112 (236)
T 1tl2_A 42 NFKFLFLS---PGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKA 112 (236)
T ss_dssp TCSEEEEC---TTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEE
T ss_pred cceeEEEC---CCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEe
Confidence 56689999 78875555 5665544444331110 01110 0111356778999998887 55777543
No 255
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=82.96 E-value=4.3 Score=22.46 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=40.1
Q ss_pred CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEe
Q psy6444 16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASG 78 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 78 (88)
.....++|+ +++..+++-..++.|..++... .....+. .......+++.+++.++++.
T Consensus 32 ~~pegia~~---~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad 89 (306)
T 2p4o_A 32 TFLENLASA---PDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATG 89 (306)
T ss_dssp CCEEEEEEC---TTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEE
T ss_pred CCcceEEEC---CCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEe
Confidence 456788898 7888777766778888888653 3333222 23567889999998876654
No 256
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=81.86 E-value=3.6 Score=26.16 Aligned_cols=60 Identities=10% Similarity=0.028 Sum_probs=35.6
Q ss_pred CEEEEEEEecCCCCcEEEEEeC-CC----CEEEEECCCC-CEEE-EecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444 17 PVVHLAFSDITESGYFLISACK-DG----KPMLRQGDTG-DWIG-TFEGHKGCVWGVDINKDASKAASGAAD 81 (88)
Q Consensus 17 ~v~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~-~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~d 81 (88)
.+...+|+| ++|+.++.... +| .+.++++.++ ..+. .+. .....+.|+|++..++-...+
T Consensus 175 ~~~~~~~S~--PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAP--PEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECT--TTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEEC
T ss_pred EEeeeEecC--CCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEEC
Confidence 466778882 48877664433 33 3888898877 5211 111 112356899999877654443
No 257
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=80.94 E-value=6.3 Score=23.02 Aligned_cols=71 Identities=13% Similarity=-0.037 Sum_probs=36.1
Q ss_pred CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC----CEEEEecCCCCeEEEEEECC-CCCeEEEecCCCeEEEc
Q psy6444 15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG----DWIGTFEGHKGCVWGVDINK-DASKAASGAADFQAKAL 87 (88)
Q Consensus 15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~i~~~ 87 (88)
...+..++|++ .++..+.+-...+.|..++.... ...............+++.+ .+.++++-...+.|.+.
T Consensus 111 ~~~~~~l~~d~--~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~ 186 (400)
T 3p5b_L 111 LRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 186 (400)
T ss_dssp CSCEEEEEEET--TTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cCcceEEeeee--ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEE
Confidence 45677888883 33444444445566777776531 12222222334556667665 34455554455555543
No 258
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=80.75 E-value=5.2 Score=21.93 Aligned_cols=45 Identities=16% Similarity=0.043 Sum_probs=23.2
Q ss_pred CCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE
Q psy6444 28 ESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA 76 (88)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 76 (88)
.++...+. . +.+..++ .++............+..+...+++..++
T Consensus 186 ~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v 230 (330)
T 3hxj_A 186 KDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV 230 (330)
T ss_dssp TTCCEEEE-S--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE
T ss_pred CCCEEEEE-e--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE
Confidence 34544433 3 5666777 55555544443334455555566655444
No 259
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=80.75 E-value=8.1 Score=24.11 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=35.1
Q ss_pred CCcEEEEEeCCC-----------CEEEEECCCCCEE--EEecC-CCCeEEEEEECCCCCeEEEecC-CCeEEEcC
Q psy6444 29 SGYFLISACKDG-----------KPMLRQGDTGDWI--GTFEG-HKGCVWGVDINKDASKAASGAA-DFQAKALK 88 (88)
Q Consensus 29 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~--~~~~~-~~~~i~~~~~~~~~~~~~~~~~-d~~i~~~~ 88 (88)
+++.++.++.+. .+.+||..++... ..+.. +.......++..++..++.++. +..+.+||
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd 271 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD 271 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEec
Confidence 778888776542 4677888766532 22221 2222334566778888887763 34566654
No 260
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=79.98 E-value=5.7 Score=21.91 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=35.3
Q ss_pred CcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 30 GYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
+..+.....++.+.++|..+.+.+..+.... .-+.++ +++..++.+..+..+.++|
T Consensus 75 ~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iD 130 (243)
T 3mbr_X 75 DRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLD 130 (243)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEEC
T ss_pred CEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEe
Confidence 4445556667889999998888887776532 224444 3455454444567787765
No 261
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=77.80 E-value=2.1 Score=26.84 Aligned_cols=60 Identities=13% Similarity=0.050 Sum_probs=40.6
Q ss_pred CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC----------CCEEEEecCCCCeE-E----EEEECCCCCeEEEec
Q psy6444 17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDT----------GDWIGTFEGHKGCV-W----GVDINKDASKAASGA 79 (88)
Q Consensus 17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~i-~----~~~~~~~~~~~~~~~ 79 (88)
....++|+ ++|..+.+..-++.+..|++.. ...+..+..+...- . .+.+++||.++.+..
T Consensus 332 gP~h~aF~---~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 332 GPLHTAFD---GRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp CEEEEEEC---TTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred CcceEEEC---CCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 35678899 7885555666788899999875 44566666654421 1 124578999888754
No 262
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=77.48 E-value=7.8 Score=24.03 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=33.5
Q ss_pred CCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeE-EEEEECCCCCeEEE
Q psy6444 29 SGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCV-WGVDINKDASKAAS 77 (88)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~ 77 (88)
.+..++.++.|+.++.+|..+++.+-.+....+.. .-+.+..++++++.
T Consensus 496 agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence 35678889999999999999999887775432211 12445567775553
No 263
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=77.34 E-value=8.9 Score=22.66 Aligned_cols=62 Identities=16% Similarity=0.020 Sum_probs=38.7
Q ss_pred EEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444 19 VHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ 83 (88)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 83 (88)
.++..+ ..-..++.-.+-|.+.+||+.++.++..-.-....|..-+.+....-+++....|.
T Consensus 263 Vamqvs---~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~Gq 324 (365)
T 2xzh_A 263 VAMQIS---EKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQ 324 (365)
T ss_dssp EEEEEE---TTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCE
T ss_pred EEEEec---ccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCE
Confidence 345555 55567888888999999999999887665544444543333333334444444444
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.40 E-value=5.2 Score=26.92 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=27.4
Q ss_pred EEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEe
Q psy6444 19 VHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTF 56 (88)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (88)
.++... .+..++++-+.|+.+++|++.++.++...
T Consensus 241 vs~~~~---~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 241 ISMIFL---STYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp SCCEEE---TTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred EEeecc---CCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 344444 67789999999999999999988766554
No 265
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=73.76 E-value=4.5 Score=26.73 Aligned_cols=28 Identities=11% Similarity=0.067 Sum_probs=22.6
Q ss_pred CeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 61 GCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 61 ~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
..+.++...++..++++-+.|+++|+|+
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWs 263 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLD 263 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEE
Confidence 3456666677778888999999999996
No 266
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=73.17 E-value=10 Score=21.27 Aligned_cols=68 Identities=12% Similarity=-0.027 Sum_probs=34.1
Q ss_pred CCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCC----CCEEEEecCCCCeEEEEEECC-CCCeEEEecCCCeEEE
Q psy6444 16 RPVVHLAFSDITESG-YFLISACKDGKPMLRQGDT----GDWIGTFEGHKGCVWGVDINK-DASKAASGAADFQAKA 86 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~i~~ 86 (88)
.....++|+ +.+ ..+.+-..++.|..++... ......+.........+++.+ .+..+++-...+.|.+
T Consensus 30 ~~p~g~~~d---~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~ 103 (316)
T 1ijq_A 30 RNVVALDTE---VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 103 (316)
T ss_dssp SSEEEEEEE---TTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred CceEEEEEE---eCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEE
Confidence 446678888 444 4555555567788887754 121122222223345666664 3444455444455544
No 267
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=72.42 E-value=11 Score=21.34 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=19.7
Q ss_pred CcEEEEEeCCCCEEEEECCCCCEEEEec
Q psy6444 30 GYFLISACKDGKPMLRQGDTGDWIGTFE 57 (88)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (88)
+..++.+..++.+..+|..+++.+-...
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~ 80 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVS 80 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeec
Confidence 4466667777888888988887654443
No 268
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=71.48 E-value=15 Score=23.11 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=26.1
Q ss_pred CCCcEEEEEeCCCCEEEEECCCCCEEEEecCC
Q psy6444 28 ESGYFLISACKDGKPMLRQGDTGDWIGTFEGH 59 (88)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (88)
..+..++.+..++.+..||..+++.+..+...
T Consensus 467 t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 467 TAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred eCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 45678888899999999999999988777543
No 269
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=71.47 E-value=14 Score=23.21 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=32.3
Q ss_pred CCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeE-EEEEECCCCCeEE
Q psy6444 29 SGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCV-WGVDINKDASKAA 76 (88)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~ 76 (88)
.+..++.++.|+.+..+|..+++.+-.+....+.+ .-+.+..++++++
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv 531 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV 531 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEE
Confidence 46677888999999999999999887765332211 2234445676554
No 270
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=70.66 E-value=11 Score=20.84 Aligned_cols=66 Identities=11% Similarity=0.114 Sum_probs=35.2
Q ss_pred EEEEEEEecCC-CCcEEEEEeC-----------------CCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeE-EEe
Q psy6444 18 VVHLAFSDITE-SGYFLISACK-----------------DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKA-ASG 78 (88)
Q Consensus 18 v~~~~~~~~~~-~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~ 78 (88)
...+++. + +|...++-.. ++.+..++...+.. ..+.........+++++++..+ ++-
T Consensus 128 p~~i~~d---~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-~~~~~~~~~p~gia~~~dg~~lyv~d 203 (322)
T 2fp8_A 128 LYAVTVD---QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET-TLLLKELHVPGGAEVSADSSFVLVAE 203 (322)
T ss_dssp EEEEEEC---TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE-EEEEEEESCCCEEEECTTSSEEEEEE
T ss_pred cceEEEe---cCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE-EEeccCCccCcceEECCCCCEEEEEe
Confidence 4556666 6 7766665432 24466666544432 2221111234567899998744 444
Q ss_pred cCCCeEEEc
Q psy6444 79 AADFQAKAL 87 (88)
Q Consensus 79 ~~d~~i~~~ 87 (88)
...+.|.++
T Consensus 204 ~~~~~I~~~ 212 (322)
T 2fp8_A 204 FLSHQIVKY 212 (322)
T ss_dssp GGGTEEEEE
T ss_pred CCCCeEEEE
Confidence 555666554
No 271
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=70.34 E-value=12 Score=20.96 Aligned_cols=65 Identities=15% Similarity=0.073 Sum_probs=39.8
Q ss_pred EEEEEEEecCCCCcEEEEEeCCC--CEEEEECCCCCEEEEecCCCCeE-EEEEECCCCCeE-EEecCCCeEEEcC
Q psy6444 18 VVHLAFSDITESGYFLISACKDG--KPMLRQGDTGDWIGTFEGHKGCV-WGVDINKDASKA-ASGAADFQAKALK 88 (88)
Q Consensus 18 v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~-~~~~~d~~i~~~~ 88 (88)
..-+.|+ ++.++.+.+.++ .+..+|..+++.+.......... -.+... +..+ .....++.+.++|
T Consensus 45 tqGL~~~----~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D 113 (262)
T 3nol_A 45 TEGFFYR----NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWN 113 (262)
T ss_dssp EEEEEEE----TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred cceEEEE----CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEE
Confidence 4667776 567777888766 78899999998877765432211 123332 3333 3444566666654
No 272
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=70.26 E-value=14 Score=21.73 Aligned_cols=56 Identities=21% Similarity=0.219 Sum_probs=36.0
Q ss_pred CCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCC----CC---e-EEEecC--CCeEEEc
Q psy6444 29 SGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD----AS---K-AASGAA--DFQAKAL 87 (88)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~---~-~~~~~~--d~~i~~~ 87 (88)
...+++...+.+-+.+||+ .++.+..+.. +.++.+...|. +. + +++... +.++.+|
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf 104 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIY 104 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEE
Confidence 4456777777778999999 6888888764 45666665552 11 1 233334 5677776
No 273
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=70.17 E-value=5.7 Score=25.20 Aligned_cols=30 Identities=20% Similarity=0.001 Sum_probs=17.2
Q ss_pred CEEEEEEEecCCCCcEEE-EEeCCCCEEEEECCC
Q psy6444 17 PVVHLAFSDITESGYFLI-SACKDGKPMLRQGDT 49 (88)
Q Consensus 17 ~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 49 (88)
.+..++|. +.++.|+ +-...+.|..+++..
T Consensus 407 ~p~gla~d---~~~~~Ly~sD~~~~~I~~~~~~g 437 (699)
T 1n7d_A 407 NVVALDTE---VASNRIYWSDLSQRMICSTQLDR 437 (699)
T ss_dssp TCCCCEEE---TTTTEEEECCTTTTSBEEEESCC
T ss_pred ceEEEccc---cccCeEEEEecCCCeEEEEecCC
Confidence 34467787 4444444 444456777777653
No 274
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=69.34 E-value=15 Score=21.73 Aligned_cols=69 Identities=6% Similarity=0.002 Sum_probs=35.1
Q ss_pred CCCCEEEEEEEecCCCCcEEEEEeC-CC----CEEEEECCCCCEE--EEecCCCCeEEEEEECC-CCCeEEEecCCCeEE
Q psy6444 14 HTRPVVHLAFSDITESGYFLISACK-DG----KPMLRQGDTGDWI--GTFEGHKGCVWGVDINK-DASKAASGAADFQAK 85 (88)
Q Consensus 14 ~~~~v~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~i~ 85 (88)
.......++++ ++++.++.+.. ++ .+..++. .+... ..+. .......++++| ++..+++-..++.|.
T Consensus 177 ~~~~P~~ia~d---~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~ 251 (430)
T 3tc9_A 177 GLSKVRTICWT---HEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVF 251 (430)
T ss_dssp CCSCEEEEEEC---TTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred CCCCcceEEEe---CCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEE
Confidence 34456778888 78885555443 22 1222332 22211 1121 123345567788 677666655556665
Q ss_pred Ec
Q psy6444 86 AL 87 (88)
Q Consensus 86 ~~ 87 (88)
.+
T Consensus 252 ~~ 253 (430)
T 3tc9_A 252 RY 253 (430)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 275
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=68.24 E-value=19 Score=22.33 Aligned_cols=63 Identities=16% Similarity=0.020 Sum_probs=40.9
Q ss_pred EEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444 19 VHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA 84 (88)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i 84 (88)
..+..+ +.-..++.-.+-|.+.+||+.++.++..-.-....|..-+.+....-+++....|.+
T Consensus 262 vamqvs---~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 262 VAMQIS---EKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp EEEEEE---TTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred eEEEec---ccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 345556 556778888889999999999998876655555555444444444445544455443
No 276
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=67.53 E-value=12 Score=20.02 Aligned_cols=60 Identities=8% Similarity=-0.032 Sum_probs=34.2
Q ss_pred CCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCC-CCeEEEe
Q psy6444 16 RPVVHLAFSDITESG-YFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD-ASKAASG 78 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~ 78 (88)
.....++++ +++ ..+++-...+.|..++...................++++++ +..+++-
T Consensus 79 ~~p~~ia~d---~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~ 140 (267)
T 1npe_A 79 GSPEGIALD---HLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTD 140 (267)
T ss_dssp CCEEEEEEE---TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEE
T ss_pred CCccEEEEE---ecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEE
Confidence 456778888 554 44555555667888887533221222222245678889885 4444443
No 277
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=65.99 E-value=22 Score=22.64 Aligned_cols=26 Identities=4% Similarity=-0.078 Sum_probs=15.4
Q ss_pred eEEEEEECCC-CCeEEEecCCCeEEEc
Q psy6444 62 CVWGVDINKD-ASKAASGAADFQAKAL 87 (88)
Q Consensus 62 ~i~~~~~~~~-~~~~~~~~~d~~i~~~ 87 (88)
....++++++ +.++++-...+.|..+
T Consensus 541 ~PnGlavd~~~~~LY~aD~~~~~I~~~ 567 (699)
T 1n7d_A 541 WPNGITLDLLSGRLYWVDSKLHSISSI 567 (699)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEE
T ss_pred CccEEEEeccCCEEEEEecCCCeEEEE
Confidence 3456788875 4455555555566554
No 278
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=65.44 E-value=22 Score=23.17 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=23.5
Q ss_pred CCcEEEEEeCCCCEEEEECCCCCEEEEe
Q psy6444 29 SGYFLISACKDGKPMLRQGDTGDWIGTF 56 (88)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (88)
+...+++-+.|+.+++|++.++..+...
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 4679999999999999999988765544
No 279
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=65.28 E-value=22 Score=22.04 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=31.5
Q ss_pred CCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCe-EEEEEECCCCCeEEE
Q psy6444 29 SGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGC-VWGVDINKDASKAAS 77 (88)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~ 77 (88)
.+..++.++.++.+..+|..+++.+..+...... -.-+.+..++.+++.
T Consensus 474 ~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 3566777888999999999999987776543211 112234456665553
No 280
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=64.76 E-value=16 Score=20.21 Aligned_cols=52 Identities=13% Similarity=-0.053 Sum_probs=33.0
Q ss_pred EEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEE--EecCCCCeEEEEEEC---CCCCeEE
Q psy6444 21 LAFSDITESGYFLISACKDGKPMLRQGDTGDWIG--TFEGHKGCVWGVDIN---KDASKAA 76 (88)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~---~~~~~~~ 76 (88)
+++. ++|..+++....+.|..++.. +.... .+........+++|. +++..+.
T Consensus 217 i~vd---~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~Ly 273 (306)
T 2p4o_A 217 FAFD---VEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIY 273 (306)
T ss_dssp EEEB---TTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred eEEC---CCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEE
Confidence 5566 678777766667788888864 55422 233233567888998 7765444
No 281
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=64.52 E-value=15 Score=22.74 Aligned_cols=49 Identities=20% Similarity=0.032 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 39 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
++.+..+|..+++.+-.+.... .+....+...+..+..++.|+.+..+|
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEE
Confidence 3567777777777554443211 111111111234455567778777664
No 282
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=62.84 E-value=25 Score=21.97 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=30.5
Q ss_pred CCCcEEEEEeC-CCCEEEEECCCCCEEEEecCCCCe-EEEEEECCCCCeEEEec
Q psy6444 28 ESGYFLISACK-DGKPMLRQGDTGDWIGTFEGHKGC-VWGVDINKDASKAASGA 79 (88)
Q Consensus 28 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~ 79 (88)
.++..++.++. +..+.+||..+......-.....+ -......+++..++.++
T Consensus 252 ~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 252 GNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp TTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECC
T ss_pred CCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeC
Confidence 57888888874 457889998766543221111111 12334456788777766
No 283
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=60.48 E-value=19 Score=19.90 Aligned_cols=55 Identities=9% Similarity=-0.063 Sum_probs=31.8
Q ss_pred EEEEEecCCCCcEEE-EEeCCCCEEEEECCCCC--EEEEecCCCCeEEEEEECCCCCeEEEe
Q psy6444 20 HLAFSDITESGYFLI-SACKDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASG 78 (88)
Q Consensus 20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~ 78 (88)
.++++ ++++.++ +-...+.|..+++.... ....+....+ ...+++.+++.++++.
T Consensus 189 gia~~---~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~ 246 (322)
T 2fp8_A 189 GAEVS---ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSS 246 (322)
T ss_dssp EEEEC---TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEE
T ss_pred ceEEC---CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEe
Confidence 46777 6787554 44555778888876321 1111111123 6677888888866654
No 284
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=58.41 E-value=23 Score=20.18 Aligned_cols=69 Identities=12% Similarity=-0.001 Sum_probs=36.4
Q ss_pred CCEEEEEEEecCCCCcEEEEEeCC-CCEEEEECCCCCEEEEe-cCCCCeEEEEEECCCCC-eEEEecCCCeEEEc
Q psy6444 16 RPVVHLAFSDITESGYFLISACKD-GKPMLRQGDTGDWIGTF-EGHKGCVWGVDINKDAS-KAASGAADFQAKAL 87 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~~~~~d~~i~~~ 87 (88)
.....++++| ..+..+.+-... +.|...+.. +.....+ .........+++++++. ++++-...+.|..+
T Consensus 159 ~~P~~iavdp--~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~ 230 (349)
T 3v64_C 159 EKPRAIALHP--MEGTIYWTDWGNTPRIEASSMD-GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 230 (349)
T ss_dssp SCEEEEEEET--TTTEEEEEECSSSCEEEEEETT-SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCcceEEEec--CcCeEEEeccCCCCEEEEEeCC-CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence 4456788883 344444444444 567666665 3222222 22334567888887544 44454444555543
No 285
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=55.49 E-value=5.2 Score=26.93 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=19.2
Q ss_pred EEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 64 WGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 64 ~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
..+....+..++++-+.|+++|+|+
T Consensus 241 vs~~~~~~~~~lftL~~D~~LRiWs 265 (1139)
T 4fhn_B 241 ISMIFLSTYNVLVMLSLDYKLKVLD 265 (1139)
T ss_dssp SCCEEETTTTEEEEEBTTCEEEEEE
T ss_pred EEeeccCCccEEEEEeCCCEEEEEE
Confidence 3334455667888999999999996
No 286
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=51.87 E-value=33 Score=19.90 Aligned_cols=70 Identities=10% Similarity=-0.059 Sum_probs=36.5
Q ss_pred CCEEEEEEEecCCCCcEEEEEeCC-CCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEecCCCeEEEc
Q psy6444 16 RPVVHLAFSDITESGYFLISACKD-GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGAADFQAKAL 87 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~i~~~ 87 (88)
.....+++.| ..+.++++-... +.|..++...................+++++++. ++++-...+.|..+
T Consensus 202 ~~P~giavdp--~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~ 273 (386)
T 3v65_B 202 EKPRAIALHP--MEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 273 (386)
T ss_dssp SCEEEEEEET--TTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred CCCcEEEEEc--CCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence 4456778883 334444444333 5566666653222222223334567888886544 44454455556544
No 287
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=50.51 E-value=36 Score=19.90 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=39.1
Q ss_pred cCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEE-EecC-----C-CCeEEEEEE---CCCCCeEEE
Q psy6444 12 SGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIG-TFEG-----H-KGCVWGVDI---NKDASKAAS 77 (88)
Q Consensus 12 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~-~~~i~~~~~---~~~~~~~~~ 77 (88)
....-.-.+++|++ ..+.++++....+.|..|+...+.... .+.. . ...+..+.+ .+++++++.
T Consensus 9 ~~~~~yPE~~~wd~--~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv 82 (334)
T 2p9w_A 9 KVKNLTPEDTIYDR--TRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAV 82 (334)
T ss_dssp CCTTCCCSCEEEET--TTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEE
T ss_pred cCcccCCcCccCcC--CCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEE
Confidence 33334455789983 355666666678999999986444322 2221 1 124578899 678777764
No 288
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=49.80 E-value=31 Score=19.04 Aligned_cols=67 Identities=12% Similarity=-0.012 Sum_probs=40.3
Q ss_pred CEEEEEEEecCCCCcEEEEEeCCC--CEEEEECCCCCEEEEecCCCCeE-EEEEECCCCCeEEEecCCCeEEEcC
Q psy6444 17 PVVHLAFSDITESGYFLISACKDG--KPMLRQGDTGDWIGTFEGHKGCV-WGVDINKDASKAASGAADFQAKALK 88 (88)
Q Consensus 17 ~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~d~~i~~~~ 88 (88)
...-+.|+ . +..+.+.+..+ .+..+|..+++.+.......... -.+.+.. ++.+.....++.+.++|
T Consensus 22 ftqGL~~~---~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D 91 (243)
T 3mbr_X 22 FTEGLFYL---R-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYD 91 (243)
T ss_dssp CEEEEEEE---T-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEE
T ss_pred ccccEEEE---C-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEE
Confidence 36678887 3 67777777754 78899999998877765432211 2233322 23333445566666654
No 289
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=47.69 E-value=44 Score=20.11 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=40.7
Q ss_pred eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCE--EEEecC------CCCeEEEEEECCC----CCeE
Q psy6444 8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDW--IGTFEG------HKGCVWGVDINKD----ASKA 75 (88)
Q Consensus 8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~i~~~~~~~~----~~~~ 75 (88)
+..+.........++|. ++|+.+++....+.|..++...+.. +..+.. ..+....++++|+ +.++
T Consensus 19 ~~~~a~~l~~P~~~a~~---pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lY 95 (454)
T 1cru_A 19 KKVILSNLNKPHALLWG---PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY 95 (454)
T ss_dssp EEEEECCCSSEEEEEEC---TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred EEEEECCCCCceEEEEc---CCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEE
Confidence 34444444566789999 7999888776555677766544442 222221 2456678999994 4444
Q ss_pred EE
Q psy6444 76 AS 77 (88)
Q Consensus 76 ~~ 77 (88)
++
T Consensus 96 v~ 97 (454)
T 1cru_A 96 IS 97 (454)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 290
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=44.55 E-value=90 Score=22.82 Aligned_cols=28 Identities=25% Similarity=0.108 Sum_probs=21.2
Q ss_pred CCCcEEEEEeCCCCEEEEECCCCCEEEE
Q psy6444 28 ESGYFLISACKDGKPMLRQGDTGDWIGT 55 (88)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (88)
+.-..++...+-|.+.+||+.++..+..
T Consensus 268 ~k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 268 EKHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred cccCEEEEEecCceEEEEecccchhhhh
Confidence 4456677788889999999988775543
No 291
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=42.88 E-value=62 Score=20.50 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=36.3
Q ss_pred EEEEecCCCCcEEEEEeCCC-------------------CEEEEECCCCCEEEEecC--CC-------CeEEEEEECCCC
Q psy6444 21 LAFSDITESGYFLISACKDG-------------------KPMLRQGDTGDWIGTFEG--HK-------GCVWGVDINKDA 72 (88)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~--~~-------~~i~~~~~~~~~ 72 (88)
+++. ++.+.++.+..++ .+.-+|..+++.+-.++. +. .......+..++
T Consensus 235 ~a~d---~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G 311 (668)
T 1kv9_A 235 MAYD---PELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDG 311 (668)
T ss_dssp EEEE---TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred eEEc---CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCC
Confidence 5667 5666777666554 377778888887655543 21 122212222244
Q ss_pred C---eEEEecCCCeEEEcC
Q psy6444 73 S---KAASGAADFQAKALK 88 (88)
Q Consensus 73 ~---~~~~~~~d~~i~~~~ 88 (88)
. .++.++.++.+.++|
T Consensus 312 ~~~~~v~~~~~~G~l~~lD 330 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLD 330 (668)
T ss_dssp EEEEEEEECCTTSEEEEEE
T ss_pred cEEEEEEEECCCCEEEEEE
Confidence 3 455666777776654
No 292
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=41.74 E-value=49 Score=18.94 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=32.6
Q ss_pred CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCE--EEEec---CCCCeEEEEEECCC
Q psy6444 14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDW--IGTFE---GHKGCVWGVDINKD 71 (88)
Q Consensus 14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~i~~~~~~~~ 71 (88)
.-.....++|. ++|..+++. ..+.|..++ .+.. +..+. ........++++|+
T Consensus 29 ~l~~P~~ia~~---pdG~l~V~e-~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pd 85 (352)
T 2ism_A 29 GLEVPWALAFL---PDGGMLIAE-RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPR 85 (352)
T ss_dssp CCSCEEEEEEC---TTSCEEEEE-TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTT
T ss_pred CCCCceEEEEc---CCCeEEEEe-CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCC
Confidence 34456688898 789866665 457888777 3432 11111 12356788999997
No 293
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=37.12 E-value=79 Score=20.02 Aligned_cols=69 Identities=6% Similarity=-0.124 Sum_probs=35.4
Q ss_pred CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCC-CCeEEEecCCCeEEE
Q psy6444 16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD-ASKAASGAADFQAKA 86 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~i~~ 86 (88)
.....++|++ .++..+.+-..++.|..++...................+++... +.++++-...+.|.+
T Consensus 37 ~~~~~l~~d~--~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v 106 (628)
T 4a0p_A 37 KEASALDFDV--TDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEV 106 (628)
T ss_dssp SCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred CceEEEEEEC--CCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEE
Confidence 4567889984 34455555556677877777543322222222233445555543 334445444444443
No 294
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=35.41 E-value=62 Score=18.28 Aligned_cols=67 Identities=12% Similarity=-0.089 Sum_probs=34.6
Q ss_pred CCEEEEEEEecCCCCcEEEEEe--CCCCEEEEECCCCCEEEEe-cCCCCeEEEEEECCCCC-eEEEecCCCeEEE
Q psy6444 16 RPVVHLAFSDITESGYFLISAC--KDGKPMLRQGDTGDWIGTF-EGHKGCVWGVDINKDAS-KAASGAADFQAKA 86 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~~~~~d~~i~~ 86 (88)
.....+++. +.+..++-.. ..+.|...+.. +.....+ ...-.....+++++++. .+++=...+.|..
T Consensus 122 ~~P~giavd---p~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~ 192 (318)
T 3sov_A 122 DQPRAIALD---PSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK 192 (318)
T ss_dssp SSEEEEEEE---GGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCccEEEEe---CCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEE
Confidence 445677787 4444444433 24566666664 3222222 22334557888887544 4444444455544
No 295
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=34.20 E-value=89 Score=19.74 Aligned_cols=69 Identities=7% Similarity=-0.020 Sum_probs=34.6
Q ss_pred CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECC-CCCeEEEecCCCeEEE
Q psy6444 16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK-DASKAASGAADFQAKA 86 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~i~~ 86 (88)
..+..++|.+ .++..+.+-...+.|..++.............-.....+++.. .+..+++-...+.|.+
T Consensus 349 ~~~~~ld~d~--~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 349 RHAIAIDYDP--VEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp SSEEEEEEET--TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred CccEEEEEEc--CCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEE
Confidence 3456788883 3444455544556677777653332222222223445566654 3445555444445543
No 296
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=29.92 E-value=86 Score=18.29 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=40.3
Q ss_pred eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCE--EEEe----cCCCCeEEEEEECCC
Q psy6444 8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDW--IGTF----EGHKGCVWGVDINKD 71 (88)
Q Consensus 8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~i~~~~~~~~ 71 (88)
+..+.........++|. ++|..+++....+.|..++...+.. +..+ .........++++|+
T Consensus 24 ~~~va~gL~~P~~ia~~---pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd 90 (347)
T 3das_A 24 LRTVATGLNSPWGLAPL---PGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD 90 (347)
T ss_dssp EEEEECCCSSEEEEEEC---TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred eEEeecCCCCceEEEEc---CCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence 44444455667789999 7999888877678888877544442 2212 123456788999985
No 297
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=29.75 E-value=87 Score=18.31 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=18.2
Q ss_pred CeEEEEEECCCCCeEE-EecCCCeEEEc
Q psy6444 61 GCVWGVDINKDASKAA-SGAADFQAKAL 87 (88)
Q Consensus 61 ~~i~~~~~~~~~~~~~-~~~~d~~i~~~ 87 (88)
...+.++|+|+++.+. +-+..+.|..|
T Consensus 221 ~~pNGia~spDg~~lYvadt~~~~I~~~ 248 (355)
T 3sre_A 221 DFANGINISPDGKYVYIAELLAHKIHVY 248 (355)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred cccCcceECCCCCEEEEEeCCCCeEEEE
Confidence 4457899999997654 44455666654
No 298
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=29.46 E-value=85 Score=18.05 Aligned_cols=63 Identities=13% Similarity=0.212 Sum_probs=37.2
Q ss_pred EecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-EEEEe---cCCCCeEEEEEECCC----CCeEEE
Q psy6444 10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-WIGTF---EGHKGCVWGVDINKD----ASKAAS 77 (88)
Q Consensus 10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~i~~~~~~~~----~~~~~~ 77 (88)
.+...-.....++|. ++|..+++.. ++.|.+++. .+. .+..+ .........++++|+ +.++++
T Consensus 23 ~va~~l~~P~~ia~~---pdG~l~V~e~-~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 23 EVASDLEVPWSIAPL---GGGRYLVTER-PGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp EEECSCSCEEEEEEE---ETTEEEEEET-TTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred EEeCCCCCCeEEEEc---CCCeEEEEeC-CCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEE
Confidence 333334556788999 6888666554 478887763 343 22211 112356788999997 444444
No 299
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=27.21 E-value=1.2e+02 Score=19.27 Aligned_cols=56 Identities=21% Similarity=0.226 Sum_probs=33.9
Q ss_pred EEEEEEecCCCCcEEEEEeCC----------CC--EEEEECCCCCEEEEecC-CCCeEEEEEECCCCCeEEE
Q psy6444 19 VHLAFSDITESGYFLISACKD----------GK--PMLRQGDTGDWIGTFEG-HKGCVWGVDINKDASKAAS 77 (88)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~ 77 (88)
=.+.|+ +.|.++++...+ +. +...+...++..+-+.+ ....+..+.|+|+++.+..
T Consensus 479 DNL~fd---~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfv 547 (592)
T 3zwu_A 479 DGLGFD---KAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFV 547 (592)
T ss_dssp EEEEEC---TTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred cceEEC---CCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEE
Confidence 357788 788877765532 12 23334444554333333 4578999999999886653
No 300
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=26.97 E-value=1.4e+02 Score=19.73 Aligned_cols=69 Identities=6% Similarity=-0.070 Sum_probs=34.9
Q ss_pred CCEEEEEEEecCCCCcEEEEEeCC-CCEEEEECCCCCEEEEecCCCCeEEEEEECCCC-CeEEEecCCCeEEE
Q psy6444 16 RPVVHLAFSDITESGYFLISACKD-GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDA-SKAASGAADFQAKA 86 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~i~~ 86 (88)
.....|++.| ..+.++.+-... +.|...++............-.....+++.+.. .++++=.....|..
T Consensus 514 ~~P~gIaVDp--~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~ 584 (791)
T 3m0c_C 514 SKPRAIVVDP--VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 584 (791)
T ss_dssp CCEEEEEEET--TTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCcceEEEec--CCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEE
Confidence 4466788883 234444443222 567777765333322233333566778887543 34444334444443
No 301
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=25.88 E-value=1e+02 Score=17.70 Aligned_cols=56 Identities=11% Similarity=0.018 Sum_probs=34.4
Q ss_pred CCcEEEEEeCCCCEEEEECCCCCEEE--Ee-cCCCCeEEEEEECCCCCeEEEec-CCCeE
Q psy6444 29 SGYFLISACKDGKPMLRQGDTGDWIG--TF-EGHKGCVWGVDINKDASKAASGA-ADFQA 84 (88)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~i~~~~~~~~~~~~~~~~-~d~~i 84 (88)
++..+++....+.|...++..+.... .+ ......+..+++.|++.++++.. .++.|
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 46677776666777766665443221 12 22345788999999999777532 44544
No 302
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=21.78 E-value=1.3e+02 Score=17.59 Aligned_cols=69 Identities=6% Similarity=-0.070 Sum_probs=35.5
Q ss_pred CCEEEEEEEecCCCCcEEEEEeC-CCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEecCCCeEEE
Q psy6444 16 RPVVHLAFSDITESGYFLISACK-DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGAADFQAKA 86 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~i~~ 86 (88)
.....+++.| ..+.++.+-.. .+.|...+.............-.....+++++++. ++++=.....|..
T Consensus 202 ~~P~~iavdp--~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~ 272 (400)
T 3p5b_L 202 SKPRAIVVDP--VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 272 (400)
T ss_dssp CCEEEEEEET--TTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCcceEEEec--ccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEE
Confidence 3456778883 34444444322 35677777653332222233335667888887544 3344344445544
No 303
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=21.21 E-value=1.2e+02 Score=16.91 Aligned_cols=68 Identities=7% Similarity=-0.103 Sum_probs=35.8
Q ss_pred CCEEEEEEEecCCCCcEEEEEeC-C-CCEEEEECCCCCEEEEe-cCCCCeEEEEEECCCCC-eEEEecCCCeEEEc
Q psy6444 16 RPVVHLAFSDITESGYFLISACK-D-GKPMLRQGDTGDWIGTF-EGHKGCVWGVDINKDAS-KAASGAADFQAKAL 87 (88)
Q Consensus 16 ~~v~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~~~~~d~~i~~~ 87 (88)
.....++++ +.+..++-+.. . +.|...+.. +.....+ .........+++++++. .+++-...+.|..+
T Consensus 120 ~~P~~iavd---p~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~ 191 (316)
T 1ijq_A 120 SKPRAIVVD---PVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 191 (316)
T ss_dssp CCEEEEEEE---TTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCcceEEeC---CCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEE
Confidence 345677788 44444443333 2 566666664 3332332 22335567888887654 44454444555543
Done!