RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6444
(88 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 48.2 bits (113), Expect = 1e-08
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN 69
T GH V + F G F++S D + + T H+ V +D +
Sbjct: 242 TLVGHDNWVRGVLFHS---GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 298
Query: 70 KDASKAASGAAD 81
K A +G+ D
Sbjct: 299 KTAPYVVTGSVD 310
Score = 43.6 bits (101), Expect = 4e-07
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGV 66
SGH PV + F ++SA +D + +TGD+ T +GH V +
Sbjct: 12 ALSGHRSPVTRVIFHP---VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65
Score = 37.4 bits (85), Expect = 6e-05
Identities = 16/57 (28%), Positives = 22/57 (38%)
Query: 29 SGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK 85
G FL+S +D + TG + T GH V GV + S A D +
Sbjct: 216 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR 272
Score = 32.0 bits (71), Expect = 0.005
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 29 SGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK 85
+G ++SA +D + + TG + TF GH+ V V N+D + AS + D +
Sbjct: 112 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 168
Score = 30.5 bits (67), Expect = 0.016
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 55 TFEGHKGCVWGVDINKDASKAASGAADFQAK 85
GH+ V V + S S + D K
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIK 42
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 46.3 bits (108), Expect = 5e-08
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 11 CSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK 70
+ ++FS +SG L++ D + D G GH V + +
Sbjct: 266 HDNIICGITSVSFS---KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322
Query: 71 DASKAASGAAD 81
D A+G+ D
Sbjct: 323 DGMAVATGSWD 333
Score = 42.4 bits (98), Expect = 9e-07
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN 69
T GH + + + L+SA +DGK ++ T + + V
Sbjct: 50 TLRGHLAKIYAMHWG---TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106
Query: 70 KD 71
Sbjct: 107 PS 108
Score = 34.3 bits (77), Expect = 7e-04
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 30 GYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD 81
+S D L G TF GH+ + + + + A+G+ D
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Score = 33.2 bits (74), Expect = 0.002
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 5/78 (6%)
Query: 10 TCSGHTRPVVHLAFSDITESGYFLISACKDG--KPMLRQGDTGDWIGTFEGHKGCVWGVD 67
T +GH + + F +G + D + + D + + + V
Sbjct: 221 TFTGHESDINAICFF---PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277
Query: 68 INKDASKAASGAADFQAK 85
+K +G DF
Sbjct: 278 FSKSGRLLLAGYDDFNCN 295
Score = 32.0 bits (71), Expect = 0.006
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 55 TFEGHKGCVWGVDINKDASKAASGAAD 81
T GH ++ + D+ S + D
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQD 76
Score = 28.5 bits (62), Expect = 0.088
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 10 TCSGHTRPVVHLAFSDITESGYFLISACKDGK 41
+GH V L +D G + + D
Sbjct: 307 VLAGHDNRVSCLGVTD---DGMAVATGSWDSF 335
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 46.0 bits (107), Expect = 7e-08
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWG 65
+ P GH V+ G ++S D + TG + T GH G VW
Sbjct: 7 KSPKVLKGHDDHVITCLQFC----GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 62
Query: 66 VDINKD 71
+ +
Sbjct: 63 SQMRDN 68
Score = 29.4 bits (64), Expect = 0.040
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 30 GYFLISACKDGKPMLRQGDTGDWIGTF-----EGHKGCVWGVDINKDASKAASGAAD 81
F+I++ DG L TG++I G G VW + + A G+ +
Sbjct: 270 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 43.7 bits (101), Expect = 4e-07
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 4/69 (5%)
Query: 10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN 69
T GH V+ + ++I+ D + ++ GH G VW +
Sbjct: 7 TLRGHMTSVITCLQFE----DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62
Query: 70 KDASKAASG 78
+
Sbjct: 63 HGGILVSGS 71
Score = 24.5 bits (51), Expect = 2.2
Identities = 6/54 (11%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 33 LISACKDGKPMLRQGDTGDWIG-TFEGHKGCVWGVDINKDASKAASGAADFQAK 85
++ + + + + +G + +W V+ + A+ D Q+
Sbjct: 296 ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSF 348
Score = 23.3 bits (48), Expect = 6.2
Identities = 5/41 (12%), Positives = 12/41 (29%), Gaps = 4/41 (9%)
Query: 5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLR 45
+ + + + F + + KDG+ L
Sbjct: 314 KLVHANILKDADQIWSVNFKG----KTLVAAVEKDGQSFLE 350
Score = 22.9 bits (47), Expect = 9.4
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVW 64
++ L SGH V L ++ G L+S D + G FEGH V
Sbjct: 43 KKFLLQLSGHDGGVWALKYAH----GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR 98
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 371
Score = 42.5 bits (98), Expect = 1e-06
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 12 SGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDW--IGTFEGHKGCVWGVDIN 69
S P+ A++ + + + + + + W + + H G V GVD
Sbjct: 4 SFLVEPISCHAWN---KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60
Query: 70 KDASKAASGAADFQAK 85
D+++ + D A
Sbjct: 61 PDSNRIVTCGTDRNAY 76
Score = 24.8 bits (52), Expect = 1.9
Identities = 5/55 (9%), Positives = 13/55 (23%), Gaps = 3/55 (5%)
Query: 10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVW 64
H V + ++ +++ D + W T +
Sbjct: 46 ELKEHNGQVTGVDWA---PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA 97
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 37.9 bits (86), Expect = 5e-05
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDI- 68
T GH V+ +A + ++ +++S KD + +G+ + +GH+ V V +
Sbjct: 303 TYIGHKDFVLSVATT---QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 359
Query: 69 -----NKDASKAASGAADFQAK 85
+ + A+G+ D +A+
Sbjct: 360 NGSSLGPEYNVFATGSGDCKAR 381
Score = 32.5 bits (72), Expect = 0.003
Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 15/97 (15%)
Query: 1 MASIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--------- 51
+ + + +GH V + F+ G ++S D L +
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFT---RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296
Query: 52 ---WIGTFEGHKGCVWGVDINKDASKAASGAADFQAK 85
T+ GHK V V ++ SG+ D
Sbjct: 297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333
Score = 30.5 bits (67), Expect = 0.016
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 15/65 (23%)
Query: 32 FLISACKDGKPMLRQGDTGDWIGTFE---------------GHKGCVWGVDINKDASKAA 76
FL+ P + T D+ + H V V + D A
Sbjct: 19 FLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLA 78
Query: 77 SGAAD 81
+G
Sbjct: 79 TGCNK 83
Score = 30.2 bits (66), Expect = 0.026
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 30 GYFLISACKDGKPMLRQGDTGDWIGTFE-------GHKGCVWGVDINKDASKAASGAADF 82
G ++ + D + +TG + + GHK V+ V +D SG+ D
Sbjct: 217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 276
Query: 83 QAK 85
K
Sbjct: 277 SVK 279
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 36.3 bits (82), Expect = 2e-04
Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 11 CSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK 70
H V+ L F+ G + +S KD + G I V DI+
Sbjct: 261 LHLHESCVLSLKFA---YCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV 316
Query: 71 DASKAASGAADFQAK 85
D +G+ D +A
Sbjct: 317 DDKYIVTGSGDKKAT 331
Score = 25.9 bits (55), Expect = 0.76
Identities = 5/34 (14%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGK 41
+ S + V+ S ++++ D K
Sbjct: 299 SIFQSKESSSVLSCDIS---VDDKYIVTGSGDKK 329
Score = 24.0 bits (50), Expect = 3.0
Identities = 9/68 (13%), Positives = 16/68 (23%), Gaps = 3/68 (4%)
Query: 14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS 73
++P + + + D I T H V V I+
Sbjct: 8 GSKPAYSFHVTA--DGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTR 64
Query: 74 KAASGAAD 81
+G
Sbjct: 65 HVYTGGKG 72
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1
{Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 36.1 bits (81), Expect = 2e-04
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTF-EGHKGCVWGVDI 68
GH + + L+ S G L SA +G TG F + H + G+
Sbjct: 7 VRYGHNKAITALSSS---ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Query: 69 N 69
Sbjct: 64 T 64
Score = 30.0 bits (65), Expect = 0.031
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 55 TFEGHKGCVWGVDINKDASKAASGAAD 81
GH + + + D S A+
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAE 33
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1
(beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 33.3 bits (74), Expect = 0.002
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 12 SGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVW 64
S ++ V L + ++S +D + +T + GH G V
Sbjct: 12 SETSKGVYCLQYD-----DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL 59
Score = 25.6 bits (54), Expect = 0.95
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 11/60 (18%)
Query: 31 YFLISACKDGKPML---------RQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD 81
++S DGK + R + T H G V+ + D + S + D
Sbjct: 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD 286
Score = 24.8 bits (52), Expect = 1.8
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 10 TCSGHTRPVVHLAFSDITESGYFLISACKDGK 41
T H+ V L F + ++S+ D
Sbjct: 262 TLVEHSGRVFRLQF-----DEFQIVSSSHDDT 288
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 33.4 bits (74), Expect = 0.002
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 12/62 (19%)
Query: 10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN 69
T SGH + + L + LIS DG+ M + + H + +D +
Sbjct: 8 TISGHNKGITALTVNP-------LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNS 55
Query: 70 KD 71
K
Sbjct: 56 KA 57
Score = 26.8 bits (57), Expect = 0.35
Identities = 9/54 (16%), Positives = 13/54 (24%), Gaps = 2/54 (3%)
Query: 29 SGYFLISACKDGKPMLRQGDT-GDWIGTFEGHKGCVWGVDINKDASKAASGAAD 81
+ + D + I HK V + S S AD
Sbjct: 226 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGAD 278
Score = 23.8 bits (49), Expect = 4.3
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 53 IGTFEGHKGCVWGVDINKDASKAASGAADFQAK 85
+ T GH + + + + SG+ D +
Sbjct: 6 LKTISGHNKGITALTV----NPLISGSYDGRIM 34
Score = 23.0 bits (47), Expect = 8.0
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 10 TCSGHTRPVVHLAFSDITESGYFLISACKDGK 41
+ H V +L + L+S+ D
Sbjct: 253 ALNAHKDGVNNLLWET----PSTLVSSGADAC 280
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 31.4 bits (69), Expect = 0.008
Identities = 10/75 (13%), Positives = 17/75 (22%), Gaps = 7/75 (9%)
Query: 7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGV 66
+P T G V L + +G + + + H
Sbjct: 12 LPRTARGT---AVVLGNTP---AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVA 64
Query: 67 DINKDASKAASGAAD 81
+ ASG
Sbjct: 65 KTSPSGYYCASGDVH 79
Score = 25.6 bits (54), Expect = 0.78
Identities = 9/54 (16%), Positives = 14/54 (25%), Gaps = 1/54 (1%)
Query: 29 SGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGC-VWGVDINKDASKAASGAAD 81
G + SA D + T T + I S +A+
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 302
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 29.5 bits (64), Expect = 0.034
Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 9/66 (13%)
Query: 14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTF--------EGHKGCVWG 65
+ V + FS + +L S + GK ++ + + G +
Sbjct: 62 GSSVVTTVKFSP-IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD 120
Query: 66 VDINKD 71
+ + +
Sbjct: 121 ISWDFE 126
Score = 24.5 bits (51), Expect = 2.3
Identities = 5/55 (9%), Positives = 13/55 (23%), Gaps = 3/55 (5%)
Query: 30 GYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN---KDASKAASGAAD 81
+ D + T + + K + + + S + D
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 26.7 bits (58), Expect = 0.39
Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 1/57 (1%)
Query: 25 DITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD 81
D F ++ G+ L G T + + V ++ D
Sbjct: 27 DWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRD 82
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 26.4 bits (56), Expect = 0.56
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Query: 6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCV-- 63
Q L H+ V+ L+F+D G L SA DGK T + I T H +
Sbjct: 280 QASLGEFAHSSWVMSLSFNDS---GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI 336
Query: 64 --WGVDINKDASKAASGA 79
+ +++ A
Sbjct: 337 EEDILAVDEHGDSLAEPG 354
Score = 22.9 bits (47), Expect = 8.0
Identities = 5/31 (16%), Positives = 9/31 (29%), Gaps = 2/31 (6%)
Query: 55 TFEGHKGCVWGVDINKDASKAASGAADFQAK 85
+ H ++ V S + D K
Sbjct: 9 AGKAHDADIFSVSACNS--FTVSCSGDGYLK 37
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 25.2 bits (53), Expect = 1.3
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 53 IGTFEGHKGCVWGVDINKDASKAASGAAD 81
+ + K + + I S + D
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWD 32
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 343
Score = 23.1 bits (48), Expect = 6.6
Identities = 4/13 (30%), Positives = 8/13 (61%)
Query: 62 CVWGVDINKDASK 74
V +D+N A++
Sbjct: 28 VVAAIDVNTVANE 40
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus
haemolyticus [TaxId: 726]}
Length = 327
Score = 22.6 bits (47), Expect = 9.8
Identities = 4/13 (30%), Positives = 8/13 (61%)
Query: 62 CVWGVDINKDASK 74
CV+ + +K A +
Sbjct: 35 CVYSNEWDKYAQE 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.427
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 340,262
Number of extensions: 13255
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 48
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.8 bits)