BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6445
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 102 bits (255), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 86/121 (71%), Gaps = 2/121 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AA+ L++ K+L+E+ + ++K +TPLHLAA+ G++++ KLL++ DV
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLI 121
NA+D G +PLH AA+ L++ K+L+E+ + ++K +TPLHLAA+ GH+++ KLL+
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 122 K 122
+
Sbjct: 122 E 122
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 71/96 (73%), Gaps = 1/96 (1%)
Query: 37 KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CS 95
+TPLHLAA+ G++++ KLL++ DVNA+D G +PLH AA+ L++ K+L+E+ +
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 96 LENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
++K +TPLHLAA+ GH+++ KLL++ DVNA+D
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 63/89 (70%), Gaps = 1/89 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AA+ L++ K+L+E+ + ++K +TPLHLAA+ G++++ KLL++ DV
Sbjct: 35 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 94
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIES 91
NA+D G +PLH AA+ L++ K+L+E+
Sbjct: 95 NAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 69 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDV 127
G +PLH AA+ L++ K+L+E+ + ++K +TPLHLAA+ GH+++ KLL++ DV
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 128 NAQD 131
NA+D
Sbjct: 62 NAKD 65
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 83/123 (67%), Gaps = 2/123 (1%)
Query: 11 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ + D +IL+ + + E+ TPLHLAA+ G++++ ++L+K+ DVNA D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 70 SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
S+PLH AAK+ L+I ++L++ + ++ + TPLHLAA GH+++ ++L+K+ DVN
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 129 AQD 131
AQD
Sbjct: 141 AQD 143
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 75/119 (63%), Gaps = 2/119 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AA+ L+I ++L+++ + + TPLHLAA+ G++++ ++L+K+ DV
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLL 120
NA D +GS+PLH AA L+I ++L++ + ++K KT ++ G+ D+ ++L
Sbjct: 107 NADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLL 55
+GS+PLH AA L+I ++L++ + ++K KT ++ G D+ ++L
Sbjct: 112 IGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 81/129 (62%), Gaps = 2/129 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AAK+N++++A+ L++ + E+ TPLHLAAQEG+ +M LL+ Q +
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
N + G +PLH A++ + +A +LI+ +M TPLH+A+ G++ + K L+
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331
Query: 122 KHQIDVNAQ 130
+HQ DVNA+
Sbjct: 332 QHQADVNAK 340
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK-TPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH A N LDI K+L+ TPLH+AA++ V++ + L+++
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
NA+ + G +PLH AA++ ++ +L+ +L NK TPLHL AQEGHV + +LI
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298
Query: 122 KHQIDVNA 129
KH + V+A
Sbjct: 299 KHGVMVDA 306
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 75/127 (59%), Gaps = 2/127 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AA++ ++ +L+ +L NK TPLHL AQEG+V + +LIKH + V
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 304
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLI 121
+A +G +PLH A+ + + K L++ + + K+ +PLH AAQ+GH D+ LL+
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 364
Query: 122 KHQIDVN 128
K+ N
Sbjct: 365 KNGASPN 371
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 6 SPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA 64
+PLH A+ L I K L++ ++ N +TPLH+AA+ G+ ++ K L++++ VNA
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 65 QDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIK 122
+ +PLH AA+ ++ K+L+E+N +L TPLH+AA+EGHV+ L++
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 39/162 (24%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE---SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
G +PLH AA++ ++ L+E S C K TPLH+AA+ G V + +LL++
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQACM--TKKGFTPLHVAAKYGKVRVAELLLERDA 170
Query: 61 DVNAQ-----------------DIV----------------GSSPLHYAAKKNKLDIAKI 87
NA DIV G +PLH AAK+N++++A+
Sbjct: 171 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 230
Query: 88 LIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
L++ + E+ TPLHLAAQEGH +M LL+ Q + N
Sbjct: 231 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN 272
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 38 TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE 97
TPLH+A+ G++ + K L++ N ++ +PLH AA+ ++AK L++ N+ +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKVN 74
Query: 98 NKMK--KTPLHLAAQEGHVDMCKLLIKHQIDVN 128
K K +TPLH AA+ GH +M KLL+++ + N
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 107
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
++G +PLH A+ + + K L++ + + K+ +PLH AAQ+G+ D+ LL+K+
Sbjct: 309 RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA 368
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKIL 88
N G++PL A + + + +L
Sbjct: 369 SPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 71 SPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNA 129
+PLH A+ L I K L++ ++ N +TPLH+AA+ GH ++ K L++++ VNA
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 130 Q 130
+
Sbjct: 76 K 76
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 84/121 (69%), Gaps = 2/121 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AA++ L+I ++L+++ + ++K TPLHLAA+EG++++ ++L+K DV
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 94
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLI 121
NA+D G +PLH AA++ L+I ++L+++ + ++K KTP LA +EGH D+ ++L
Sbjct: 95 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQ 154
Query: 122 K 122
K
Sbjct: 155 K 155
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 86/123 (69%), Gaps = 2/123 (1%)
Query: 11 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ + D +IL+ + + ++K TPLHLAA+EG++++ ++L+K DVNA+D G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 70 SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
+PLH AA++ L+I ++L+++ + ++K TPLHLAA+EGH+++ ++L+K DVN
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 129 AQD 131
AQD
Sbjct: 129 AQD 131
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 86/123 (69%), Gaps = 2/123 (1%)
Query: 11 AAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ + D +IL+ + + ++K TPLHLAA+EG++++ ++L+K DVNA+D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 70 SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
+PLH AA++ L+I ++L+++ + ++K TPLHLAA+EGH+++ ++L+K DVN
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 129 AQD 131
AQD
Sbjct: 141 AQD 143
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 80/119 (67%), Gaps = 2/119 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AA++ L+I ++L+++ + ++K TPLHLAA+EG++++ ++L+K DV
Sbjct: 47 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 106
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLL 120
NA+D G +PLH AA++ L+I ++L+++ + ++K KT ++ G+ D+ ++L
Sbjct: 107 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 86/123 (69%), Gaps = 2/123 (1%)
Query: 11 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ + D +IL+ + + ++K TPLHLAA+EG++++ ++L+K DVNA+D G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 70 SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
+PLH AA++ L+I ++L+++ + ++K TPLHLAA+EGH+++ ++L+K DVN
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 129 AQD 131
AQD
Sbjct: 129 AQD 131
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 82/121 (67%), Gaps = 2/121 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AA++ L+I ++L+++ + ++K TPLHLAA+EG++++ ++L+K DV
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 94
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
NA+D G +PLH AA++ L+I ++L+++ + ++K KTP LA G+ D+ ++L
Sbjct: 95 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQ 154
Query: 122 K 122
K
Sbjct: 155 K 155
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 92.0 bits (227), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 81/123 (65%), Gaps = 2/123 (1%)
Query: 11 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ + D +IL+ + + E+ KTPLHLAA +G++++ ++L+KH DVNA D +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 70 SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
+PLH AA L+I ++L+++ + + TPLHLAA GH+++ ++L+K+ DVN
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 129 AQD 131
AQD
Sbjct: 141 AQD 143
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 74/121 (61%), Gaps = 2/121 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AA K L+I ++L++ + +KM TPLHLAA G++++ ++L+K+ DV
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADV 106
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLI 121
NA D G +PLH AA L+I ++L++ + ++K KT ++ G+ D+ ++L
Sbjct: 107 NATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Query: 122 K 122
K
Sbjct: 167 K 167
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
++G +PLH AA L+I ++L+++ + + TPLHLAA G++++ ++L+K+
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKIL 88
DVNAQD G + + D+A+IL
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 79/123 (64%), Gaps = 2/123 (1%)
Query: 11 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ + D +IL+ + + + TPLHLAA G++++ ++L+KH DVNA DI+G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 70 SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
S+PLH AA L+I ++L++ + + TPLHLAA GH+++ ++L+KH DVN
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 129 AQD 131
AQD
Sbjct: 141 AQD 143
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 2/121 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AA L+I ++L++ + + M TPLHLAA G++++ ++L+KH DV
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLI 121
NA D G +PLH AA L+I ++L++ + ++K KT ++ G+ D+ ++L
Sbjct: 107 NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Query: 122 K 122
K
Sbjct: 167 K 167
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
+GS+PLH AA L+I ++L++ + + TPLHLAA G++++ ++L+KH D
Sbjct: 79 MGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKIL 88
VNAQD G + + D+A+IL
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 76 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI 132
AA+ + D +IL+ + + + TPLHLAA GH+++ ++L+KH DVNA DI
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI 78
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Query: 11 AAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ D K LIE+ + + +TPLH AA+EG+ ++ KLLI DVNA+D G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 70 SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
+PLHYAAK+ +I K+LI + ++ +TPLH AA+EGH ++ KLLI DVN
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Query: 129 AQDIEA 134
D +
Sbjct: 131 TSDSDG 136
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 75/121 (61%), Gaps = 2/121 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLHYAAK+ +I K+LI + ++ +TPLH AA+EG+ ++ KLLI DV
Sbjct: 37 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 96
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
NA+D G +PLHYAAK+ +I K+LI + + +TPL LA + G+ ++ KLL
Sbjct: 97 NAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLE 156
Query: 122 K 122
K
Sbjct: 157 K 157
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 78/123 (63%), Gaps = 2/123 (1%)
Query: 11 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ + D +ILI + + + TPLHLAA G++++ ++L+KH DV+A D+ G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 70 SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
+PLH AA L+I ++L++ + + TPLHLAA EGH+++ ++L+K+ DVN
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Query: 129 AQD 131
AQD
Sbjct: 141 AQD 143
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 2/119 (1%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
G +PLH AA L+I ++L++ + TPLHLAA G++++ ++L+K+
Sbjct: 45 NTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGA 104
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCK 118
DVNA D+ GS+PLH AA + L+I ++L++ + ++K KT ++ G+ D+ K
Sbjct: 105 DVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMK 101
AA+ G D ++LI + DVNA D G +PLH AA L+I ++L++ +
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA 134
TPLHLAA GH+++ ++L+K+ DVNA D+
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTG 113
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 2/123 (1%)
Query: 11 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ + D +IL+ + + + TPLHLAA G++++ ++L+KH DVNA DI G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 70 SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
S+PLH AA L+I ++L++ + + TPLHLAA GH+++ ++L+KH DVN
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 129 AQD 131
AQD
Sbjct: 141 AQD 143
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AA L+I ++L++ + + TPLHLAA G++++ ++L+KH DV
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLI 121
NA D G +PLH AA L+I ++L++ + ++K KT ++ G+ D+ ++L
Sbjct: 107 NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Query: 122 K 122
K
Sbjct: 167 K 167
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 76 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI 132
AA+ + D +IL+ + + + TPLHLAA GH+++ ++L+KH DVNA DI
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI 78
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 77/123 (62%), Gaps = 2/123 (1%)
Query: 11 AAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ + D +IL+ + + + TPLHLAA G+ ++ ++L+KH DVNA+D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 70 SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
+PLH AA L+I ++L++ + ++ TPLHLAA GH+++ ++L+KH DVN
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 129 AQD 131
AQD
Sbjct: 141 AQD 143
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 73/121 (60%), Gaps = 2/121 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
GS+PLH AA +I ++L++ + + TPLHLAA G++++ ++L+K+ DV
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADV 106
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
NAQD G +PLH AA + L+I ++L++ + ++K KT ++ G+ D+ ++L
Sbjct: 107 NAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Query: 122 K 122
K
Sbjct: 167 K 167
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 32/92 (34%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK 102
AA+ G D ++L+ + DVNA D GS
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGS-------------------------------- 48
Query: 103 TPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA 134
TPLHLAA GH ++ ++L+KH DVNA+D +
Sbjct: 49 TPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 79/123 (64%), Gaps = 2/123 (1%)
Query: 11 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ + D +IL+ + + + TPLHLAA G++++ ++L+KH DV+A D+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 70 SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
+PLH AA L+I ++L+++ + + TPLHLAA+ G++++ ++L+KH DVN
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 129 AQD 131
AQD
Sbjct: 141 AQD 143
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
G++PLH AA L+I ++L++ + TPLHLAA G++++ ++L+K+
Sbjct: 45 NTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGA 104
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKL 119
DVNA D G +PLH AAK L+I ++L++ + ++K KT ++ G+ D+ ++
Sbjct: 105 DVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 120 LIK 122
L K
Sbjct: 165 LQK 167
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 76 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI 132
AA+ + D +IL+ + + + TPLHLAA GH+++ ++L+KH DV+A D+
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDV 78
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 89.4 bits (220), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 83/131 (63%), Gaps = 17/131 (12%)
Query: 18 DIAKILIESNRCSLENKMK----------------KTPLHLAAQEGYVDMCKLLIKHQID 61
D+ K L+E+ R +++++ TPLHLAA G++++ ++L+K+ D
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLL 120
VNA+D +G +PLH AA++ L+I ++L+++ + + TPLHLAA+ GH+++ ++L
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132
Query: 121 IKHQIDVNAQD 131
+K+ DVNAQD
Sbjct: 133 LKNGADVNAQD 143
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 78/122 (63%), Gaps = 2/122 (1%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G +PLH AA L+I ++L+++ + ++ + TPLHLAA+ G++++ ++L+K+ D
Sbjct: 46 TGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD 105
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLL 120
VNA D G +PLH AAK+ L+I ++L+++ + ++K KT ++ G+ D+ ++L
Sbjct: 106 VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 121 IK 122
K
Sbjct: 166 QK 167
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
+G +PLH AA++ L+I ++L+++ + + TPLHLAA+ G++++ ++L+K+
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKIL 88
DVNAQD G + + D+A+IL
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 89.4 bits (220), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 81/123 (65%), Gaps = 2/123 (1%)
Query: 11 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ + D +IL+ + + + + TPLHLAA G++++ ++L+K+ DVNA D +G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 70 SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
S+PLH AA L+I ++L+++ + ++ TPLHLAA GH+++ ++L+K+ DVN
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 129 AQD 131
AQD
Sbjct: 141 AQD 143
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 76/122 (62%), Gaps = 2/122 (1%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
VG +PLH AA L+I ++L+++ + + + TPLHLAA G++++ ++L+K+ D
Sbjct: 46 VGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLL 120
VNA+D G +PLH AA + L+I ++L++ + ++K KT ++ G+ D+ ++L
Sbjct: 106 VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Query: 121 IK 122
K
Sbjct: 166 QK 167
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 81/123 (65%), Gaps = 2/123 (1%)
Query: 11 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ + D +IL+ + + + + TPLHLAA+ G++++ ++L+K+ DVNA D G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 70 SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
++PLH AA L+I ++L++ + ++ TPLHLAA +GH+++ ++L+K+ DVN
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 129 AQD 131
AQD
Sbjct: 141 AQD 143
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
+G +PLH AAK L+I ++L++ + + TPLHLAA G++++ ++L+KH
Sbjct: 45 WLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGA 104
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKL 119
DVNA+D G +PLH AA L+I ++L++ + ++K KT ++ G+ D+ ++
Sbjct: 105 DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 120 LIK 122
L K
Sbjct: 165 LQK 167
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMK 101
AA+ G D ++L+ + DVNA D +G +PLH AAK L+I ++L++ + +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA 134
TPLHLAA GH+++ ++L+KH DVNA+D E
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEG 113
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 88.6 bits (218), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 82/132 (62%), Gaps = 19/132 (14%)
Query: 18 DIAKILIESNRCSLENKMK----------------KTPLHLAAQEGYVDMCKLLIKHQID 61
D+ K L+E+ R +++++ TPLHLAA G++++ ++L+K+ D
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD 72
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHLAAQEGHVDMCKL 119
VNA D+ G +PLH AA L+I ++L++ ++ + +N TPLHLAA+ GH+++ ++
Sbjct: 73 VNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDND-GHTPLHLAAKYGHLEIVEV 131
Query: 120 LIKHQIDVNAQD 131
L+KH DVNAQD
Sbjct: 132 LLKHGADVNAQD 143
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AA L+I ++L+++ + + TPLHLAA G++++ ++L+KH DV
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADV 106
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLL 120
NA D G +PLH AAK L+I ++L++ + ++K KT ++ G+ D+ ++L
Sbjct: 107 NAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 16/66 (24%)
Query: 83 DIAKILIESNRCSLENKMK----------------KTPLHLAAQEGHVDMCKLLIKHQID 126
D+ K L+E+ R +++++ TPLHLAA GH+++ ++L+K+ D
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD 72
Query: 127 VNAQDI 132
VNA D+
Sbjct: 73 VNASDL 78
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 80/123 (65%), Gaps = 2/123 (1%)
Query: 11 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ + D +IL+ + + + + TPLHLAA G++++ ++L+K+ DVNA D +G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 70 SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
+PLH AA + L++ ++L+++ + + TPLHLAA GH+++ ++L+KH DVN
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 129 AQD 131
AQD
Sbjct: 141 AQD 143
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 75/123 (60%), Gaps = 2/123 (1%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
VG +PLH AA L+I ++L+++ + ++ + TPLHLAA G++++ ++L+K+
Sbjct: 45 HVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGA 104
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKL 119
DVNA D G +PLH AA L+I ++L++ + ++K KT ++ G+ D+ ++
Sbjct: 105 DVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 120 LIK 122
L K
Sbjct: 165 LQK 167
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 77/123 (62%), Gaps = 2/123 (1%)
Query: 11 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ + D +IL+ + + + TPLHL G++++ ++L+K+ DVNA D G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 70 SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
+PLH AA + L+I ++L++ + + TPLHLAA++GH+++ ++L+K+ DVN
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 129 AQD 131
AQD
Sbjct: 141 AQD 143
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
G +PLH L+I ++L++ + + +K TPLHLAA G++++ ++L+K+
Sbjct: 45 WFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA 104
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKL 119
DVNA D G +PLH AA+ L+I ++L++ + ++K KT ++ G+ D+ ++
Sbjct: 105 DVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 120 LIK 122
L K
Sbjct: 165 LQK 167
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMK 101
AA+ G D ++L+ + DVNA D G +PLH L+I ++L++ + + +K
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA 134
TPLHLAA GH+++ ++L+K+ DVNA D +
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQG 113
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 80/131 (61%), Gaps = 17/131 (12%)
Query: 18 DIAKILIESNRCSLENKMK----------------KTPLHLAAQEGYVDMCKLLIKHQID 61
D+ K L+E+ R +++++ +TPLH+AA G++++ ++L+++ D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLL 120
VNA D G++PLH AA L+I ++L++ + ++ TPL+LAA GH+++ ++L
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVL 120
Query: 121 IKHQIDVNAQD 131
+KH DVNAQD
Sbjct: 121 LKHGADVNAQD 131
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AA L+I ++L+ + + + TPLHLAA G++++ ++L+K+ DV
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV 94
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKLL 120
NA+D G +PL+ AA L+I ++L++ + ++K KT ++ G+ D+ ++L
Sbjct: 95 NAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 78/123 (63%), Gaps = 2/123 (1%)
Query: 11 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ + D +IL+ + + E+ TPLHLAA G++++ ++L+K+ DVNA D G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 70 SSPLHYAAKKNKLDIAKILIESNRCSLENKMKK-TPLHLAAQEGHVDMCKLLIKHQIDVN 128
+PL AA L+I ++L+++ N M+ TPLHLAA GH+++ ++L+K+ DVN
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 129 AQD 131
AQD
Sbjct: 141 AQD 143
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 73/121 (60%), Gaps = 2/121 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AA L+I ++L+++ + + TPL LAA G++++ ++L+K+ DV
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV 106
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLI 121
NA D+ G +PLH AA L+I ++L+++ + ++K KT ++ G+ D+ ++L
Sbjct: 107 NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Query: 122 K 122
K
Sbjct: 167 K 167
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMK 101
AA+ G D ++L+ + DVNA+D G +PLH AA L+I ++L+++ + +
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA 134
TPL LAA GH+++ ++L+K+ DVNA D+E
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEG 113
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 65/87 (74%), Gaps = 1/87 (1%)
Query: 37 KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CS 95
+TPLHLAA+ G++++ KLL++ DVNA+D G +PLH AA+ L++ K+L+E+ +
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 96 LENKMKKTPLHLAAQEGHVDMCKLLIK 122
++K +TPLHLAA+ GH+++ KLL++
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AA+ L++ K+L+E+ + ++K +TPLHLAA+ G++++ KLL++ DV
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
NA+D G +PLH AA+ L++ K+L+E+
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 69 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDV 127
G +PLH AA+ L++ K+L+E+ + ++K +TPLHLAA+ GH+++ KLL++ DV
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 128 NAQD 131
NA+D
Sbjct: 62 NAKD 65
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 82.4 bits (202), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 38 TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSL 96
TPLHLAA G +++ ++L+K+ DVNA D G +PLH AA L+I ++L++ +
Sbjct: 41 TPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNA 100
Query: 97 ENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
++ TPLHLAA G +++ ++L+KH DVNAQD
Sbjct: 101 YDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQD 135
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 73/119 (61%), Gaps = 2/119 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AA +L+I ++L+++ + + TPLHLAA +G++++ ++L+KH DV
Sbjct: 39 GLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADV 98
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKLL 120
NA D G +PLH AA +L+I ++L++ + ++ + T ++ +G D+ ++L
Sbjct: 99 NAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMK 101
AA G D ++L+ + DVNA D G +PLH AA +L+I ++L+++ + +
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
TPLHLAA +GH+++ ++L+KH DVNA D
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYD 102
Score = 32.3 bits (72), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 32/87 (36%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
+ G +PLH AA +L+I ++ L+KH D
Sbjct: 103 RAGWTPLHLAALSGQLEIVEV--------------------------------LLKHGAD 130
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKIL 88
VNAQD +G + + + + D+A+IL
Sbjct: 131 VNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 11 AAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ D K LIE+ + + +TPLH AA+ G+ ++ KLLI DVNA+D G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 70 SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
+PLH+AA+ ++ K+LI + ++ +TPLH AA+ GH ++ KLLI DVN
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Query: 129 AQDIEA 134
D +
Sbjct: 131 TSDSDG 136
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 72/121 (59%), Gaps = 2/121 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH+AA+ ++ K+LI + ++ +TPLH AA+ G+ ++ KLLI DV
Sbjct: 37 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 96
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
NA+D G +PLH+AA+ ++ K+LI + + +TPL LA + G+ ++ KLL
Sbjct: 97 NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLE 156
Query: 122 K 122
K
Sbjct: 157 K 157
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 1/134 (0%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
++G + A NK + +L + + KTPLHLAA+ G+ ++ KLL+ D
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD 62
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGHVDMCKLL 120
NA+D G +PLH AA+ ++ K+L+ + + ++ KTPLHLAA+ GH ++ KLL
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Query: 121 IKHQIDVNAQDIEA 134
+ D N D +
Sbjct: 123 LSQGADPNTSDSDG 136
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 2/121 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AA+ ++ K+L+ + + ++ KTPLHLAA+ G+ ++ KLL+ D
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 96
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
NA+D G +PLH AA+ ++ K+L+ + + + +TPL LA + G+ ++ KLL
Sbjct: 97 NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLE 156
Query: 122 K 122
K
Sbjct: 157 K 157
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLHYAA+ +I K+L+ + ++ +TPLH AA+ G+ ++ KLL+ D
Sbjct: 37 GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP 96
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
NA+D G +PLHYAA+ +I K+L+ + + +TPL LA + G+ ++ KLL
Sbjct: 97 NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLE 156
Query: 122 K 122
K
Sbjct: 157 K 157
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
++G + A NK + +L + + +TPLH AA+ G+ ++ KLL+ D
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGAD 62
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLL 120
NA+D G +PLHYAA+ +I K+L+ + ++ +TPLH AA+ GH ++ KLL
Sbjct: 63 PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Query: 121 IKHQIDVNAQDIEA 134
+ D N D +
Sbjct: 123 LSKGADPNTSDSDG 136
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 75.5 bits (184), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 72/121 (59%), Gaps = 2/121 (1%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
+G+SPLH AA+ ++L+ + K+ +TPLH+AA EG+ ++ ++L+KH
Sbjct: 32 WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGA 91
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKL 119
DVNA+D++ + LH+A + N ++ ++LI+ ++K KT ++ G+ D+ ++
Sbjct: 92 DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151
Query: 120 L 120
L
Sbjct: 152 L 152
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 69/121 (57%), Gaps = 1/121 (0%)
Query: 11 AAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGS 70
AA+ + D +IL+ + + + +PLHLAAQ G+ ++L++ + +A+ V
Sbjct: 9 AARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR 68
Query: 71 SPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNA 129
+PLH AA + +I ++L++ + ++ +K T LH A + H ++ +LLIK+ DV+
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128
Query: 130 Q 130
Q
Sbjct: 129 Q 129
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMK 101
AA+ G D ++L+ + D +G+SPLH AA+ ++L+ + K+
Sbjct: 9 AARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI 132
+TPLH+AA EGH ++ ++L+KH DVNA+D+
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADVNAKDM 98
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMK 101
AA+ G D ++L+ + DVNA+D VG +PLH AA + L+I ++L+++ + + +
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+TPLHL A GH+++ ++L+KH DVNAQD
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQD 110
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 11 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ + D +IL+ + + E+K+ TPLHLAA ++++ ++L+K+ DVNA D +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 70 SSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKLLIK 122
+PLH A L+I ++L++ + ++K KT ++ G+ D+ ++L K
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
+VG +PLH AA + L+I ++L+++ + + + +TPLHL A G++++ ++L+KH
Sbjct: 45 KVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGA 104
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKIL 88
DVNAQD G + + D+A+IL
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 70/122 (57%), Gaps = 17/122 (13%)
Query: 18 DIAKILIESNRCSLENKMK----------------KTPLHLAAQEGYVDMCKLLIKHQID 61
D+ K L+E+ R +++++ TPLHLAA+ G++++ ++L+KH D
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKLL 120
VNA+DI G +PLH AA L+I ++L+E + ++K KT ++ G+ D+ ++L
Sbjct: 73 VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 121 IK 122
K
Sbjct: 133 QK 134
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMK 101
A + G D ++L+ + DVNA D G +PLH AAK+ L+I ++L++ + +
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+TPLHLAA GH+++ ++L+++ DVNAQD
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AAK+ L+I ++L++ + + +TPLHLAA G++++ ++L+++ DV
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKIL 88
NAQD G + + D+A+IL
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 16/66 (24%)
Query: 83 DIAKILIESNRCSLENKMK----------------KTPLHLAAQEGHVDMCKLLIKHQID 126
D+ K L+E+ R +++++ TPLHLAA+ GH+++ ++L+KH D
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 127 VNAQDI 132
VNA+DI
Sbjct: 73 VNARDI 78
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 69/122 (56%), Gaps = 17/122 (13%)
Query: 18 DIAKILIESNRCSLENKMK----------------KTPLHLAAQEGYVDMCKLLIKHQID 61
D+ K L+E+ R +++++ TPLHLAA+ G++++ ++L+KH D
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKLL 120
VNA DI G +PLH AA L+I ++L+E + ++K KT ++ G+ D+ ++L
Sbjct: 73 VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 121 IK 122
K
Sbjct: 133 QK 134
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMK 101
A + G D ++L+ + DVNA D G +PLH AAK+ L+I ++L++ + +
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+TPLHLAA GH+++ ++L+++ DVNAQD
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AAK+ L+I ++L++ + + +TPLHLAA G++++ ++L+++ DV
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKIL 88
NAQD G + + D+A+IL
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 16/66 (24%)
Query: 83 DIAKILIESNRCSLENKMK----------------KTPLHLAAQEGHVDMCKLLIKHQID 126
D+ K L+E+ R +++++ TPLHLAA+ GH+++ ++L+KH D
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 127 VNAQDI 132
VNA DI
Sbjct: 73 VNASDI 78
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMK 101
A + G D ++L+ + DVNA D G +PLH AAK+ L+I ++L++ + +
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+TPLHLAA GH+++ ++L+++ DVNAQD
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 17/122 (13%)
Query: 18 DIAKILIESNRCSLENKMK----------------KTPLHLAAQEGYVDMCKLLIKHQID 61
D+ K L+E+ R +++++ TPLHLAA+ G++++ ++L+KH D
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKLL 120
VNA D G +PLH AA L+I ++L+E + ++K KT ++ G+ D+ ++L
Sbjct: 73 VNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 121 IK 122
K
Sbjct: 133 QK 134
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AAK+ L+I ++L++ + + +TPLHLAA G++++ ++L+++ DV
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKIL 88
NAQD G + + D+A+IL
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 16/65 (24%)
Query: 83 DIAKILIESNRCSLENKMK----------------KTPLHLAAQEGHVDMCKLLIKHQID 126
D+ K L+E+ R +++++ TPLHLAA+ GH+++ ++L+KH D
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 127 VNAQD 131
VNA D
Sbjct: 73 VNASD 77
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
Q G +PLHYAA KN+ +IA +L+E ++ + T +H AA +G + M +L+ ++
Sbjct: 105 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA 164
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLA 108
N QD G++PLH A + +++ AK+L+ + +ENK +KTPL +A
Sbjct: 165 STNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
Query: 6 SPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA 64
+ LH+A +I + L++ + ++ +PLH+AA G ++ K L+ VNA
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 65 QDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKH 123
+ G +PLHYAA KN+ +IA +L+E ++ + T +H AA +G++ M +L+ +
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 162
Query: 124 QIDVNAQDIEA 134
+ N QD E
Sbjct: 163 KASTNIQDTEG 173
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 2/133 (1%)
Query: 3 VGSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G SPLH AA + +I K L+ + + + N+ TPLH AA + ++ +L++ +
Sbjct: 73 AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 132
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCS-LENKMKKTPLHLAAQEGHVDMCKLL 120
+A+D ++ +H AA K L + IL+ + +++ TPLHLA E V+ KLL
Sbjct: 133 PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLL 192
Query: 121 IKHQIDVNAQDIE 133
+ + ++ E
Sbjct: 193 VSQGASIYIENKE 205
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
Query: 8 LHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDI 67
L Y+ K +L IL + + + ++ +T LH A G+ ++ + L++ + VN +D
Sbjct: 14 LAYSGKLEELK-ESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 72
Query: 68 VGSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID 126
G SPLH AA + +I K L+ + + + N+ TPLH AA + ++ +L++ +
Sbjct: 73 AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 132
Query: 127 VNAQD 131
+A+D
Sbjct: 133 PDAKD 137
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
Q G +PLHYAA KN+ +IA +L+E ++ + T +H AA +G + M +L+ ++
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA 163
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLA 108
N QD G++PLH A + +++ AK+L+ + +ENK +KTPL +A
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
Query: 6 SPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA 64
+ LH+A +I + L++ + ++ +PLH+AA G ++ K L+ VNA
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 65 QDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKH 123
+ G +PLHYAA KN+ +IA +L+E ++ + T +H AA +G++ M +L+ +
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 161
Query: 124 QIDVNAQDIEA 134
+ N QD E
Sbjct: 162 KASTNIQDTEG 172
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 2/132 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G SPLH AA + +I K L+ + + + N+ TPLH AA + ++ +L++ +
Sbjct: 73 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCS-LENKMKKTPLHLAAQEGHVDMCKLLI 121
+A+D ++ +H AA K L + IL+ + +++ TPLHLA E V+ KLL+
Sbjct: 133 DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV 192
Query: 122 KHQIDVNAQDIE 133
+ ++ E
Sbjct: 193 SQGASIYIENKE 204
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
Query: 8 LHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDI 67
L Y+ K +L IL + + + ++ +T LH A G+ ++ + L++ + VN +D
Sbjct: 13 LAYSGKLEELK-ESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 68 VGSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID 126
G SPLH AA + +I K L+ + + + N+ TPLH AA + ++ +L++ +
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 127 VNAQD 131
+A+D
Sbjct: 132 PDAKD 136
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
Q G +PLHYAA KN+ +IA +L+E ++ T +H AA +G + M +L+ ++
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLA 108
N QD G++PLH A + +++ AK L+ + +ENK +KTPL +A
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 71/135 (52%), Gaps = 2/135 (1%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
Q + LH+A +I + L++ + ++ +PLH+AA G ++ K L+
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKL 119
VNA + G +PLHYAA KN+ +IA +L+E ++ T +H AA +G++ M +
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 120 LIKHQIDVNAQDIEA 134
L+ ++ N QD E
Sbjct: 158 LLFYKASTNIQDTEG 172
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 4 GSSPLHYAAKKNKLDIAK-ILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G SPLH AA +I K +L++ + N+ TPLH AA + ++ +L++ +
Sbjct: 73 GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCS-LENKMKKTPLHLAAQEGHVDMCKLLI 121
+A+D ++ +H AA K L + IL+ + +++ TPLHLA E V+ K L+
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
Query: 122 KHQIDVNAQDIE 133
+ ++ E
Sbjct: 193 TQGASIYIENKE 204
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 8 LHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDI 67
L Y+ K ++L +IL + + + ++ +T LH A G+ ++ + L++ + VN +D
Sbjct: 13 LAYSGKLDELK-ERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 68 VGSSPLHYAAKKNKLDIAK-ILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID 126
G SPLH AA +I K +L++ + N+ TPLH AA + ++ +L++ +
Sbjct: 72 AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 127 VNAQD 131
+A+D
Sbjct: 132 PDAKD 136
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
Q G +PLHYAA KN+ +IA +L+E ++ T +H AA +G + M +L+ ++
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLA 108
N QD G++PLH A + +++ AK L+ + +ENK +KTPL +A
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 71/135 (52%), Gaps = 2/135 (1%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
Q + LH+A +I + L++ + ++ +PLH+AA G ++ K L+
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGA 97
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKL 119
VNA + G +PLHYAA KN+ +IA +L+E ++ T +H AA +G++ M +
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 120 LIKHQIDVNAQDIEA 134
L+ ++ N QD E
Sbjct: 158 LLFYKASTNIQDTEG 172
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 2/132 (1%)
Query: 4 GSSPLHYAAKKNKLDIAK-ILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G SPLH AA + +I K +L++ + N+ TPLH AA + ++ +L++ +
Sbjct: 73 GWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCS-LENKMKKTPLHLAAQEGHVDMCKLLI 121
+A+D ++ +H AA K L + IL+ + +++ TPLHLA E V+ K L+
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
Query: 122 KHQIDVNAQDIE 133
+ ++ E
Sbjct: 193 TQGASIYIENKE 204
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 69/125 (55%), Gaps = 2/125 (1%)
Query: 8 LHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDI 67
L Y+ K ++L +IL + + + ++ +T LH A G+ ++ + L++ + VN +D
Sbjct: 13 LAYSGKLDELK-ERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 68 VGSSPLHYAAKKNKLDIAK-ILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID 126
G SPLH AA + +I K +L++ + N+ TPLH AA + ++ +L++ +
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 127 VNAQD 131
+A+D
Sbjct: 132 PDAKD 136
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMK 101
AA+ G D ++L+ + DVNA D G +PLH AA+ L+I ++L++ + E+
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
TPLHLAA GH+++ ++L+KH DVNAQD
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQD 110
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 70/122 (57%), Gaps = 17/122 (13%)
Query: 18 DIAKILIESNRCSLENKMK----------------KTPLHLAAQEGYVDMCKLLIKHQID 61
D+ K L+E+ R +++++ TPLHLAAQ G++++ ++L+K+ D
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKLL 120
VNA+D G +PLH AA + L+I ++L++ + ++K KT ++ G+ D+ ++L
Sbjct: 73 VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 121 IK 122
K
Sbjct: 133 QK 134
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AA+ L+I ++L++ + E+ TPLHLAA G++++ ++L+KH DV
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADV 106
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKIL 88
NAQD G + + D+A+IL
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMK 101
AA+ G D ++L + DVNA D G +PLH AA L+I ++L+++ +
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+TPLHLAA H+++ ++L+KH DVNAQD
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQD 110
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 17/122 (13%)
Query: 18 DIAKILIESNRCSLENKMK----------------KTPLHLAAQEGYVDMCKLLIKHQID 61
D+ K L+E+ R +++++ TPLHLAA G++++ ++L+K+ D
Sbjct: 13 DLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKLL 120
VNA G +PLH AA + L+I ++L++ + ++K KT ++ G+ D+ ++L
Sbjct: 73 VNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 121 IK 122
K
Sbjct: 133 QK 134
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AA L+I ++L+++ + +TPLHLAA ++++ ++L+KH DV
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKIL 88
NAQD G + + D+A+IL
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMK 101
AA+ G D ++L+ + DVNA D G++PLH AA + L+I ++L++ + +
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
TPLHLAA GH+++ ++L+KH DVNAQD
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQD 110
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 11 AAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ + D +IL+ + + ++ TPLHLAA ++++ ++L+KH DVNA D G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 70 SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIK 122
S+PLH AA L+I ++L++ + ++K KT ++ G+ D+ ++L K
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G++PLH AA + L+I ++L++ + + TPLHLAA G++++ ++L+KH DV
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADV 106
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKIL 88
NAQD G + + D+A+IL
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESNRCSLENKM--KKTPLHLAAQEGYVDMCKLLIKHQ 59
G +PLH A + + + +IL+ + +L +M TPL LAA+ M + LI
Sbjct: 82 NTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITAD 141
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILI--ESNRCSLENKMKKTPLHLAAQEGHVDMC 117
D+NA D G + LH+AA N + IL+ +NR + ++K +TPL LAA+EG +
Sbjct: 142 ADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDK-DETPLFLAAREGSYEAS 200
Query: 118 KLLI 121
K L+
Sbjct: 201 KALL 204
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
+K +T LHLAA+ D K L+ D N+QD G +PLH A + + + +IL+ +
Sbjct: 48 DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNR 107
Query: 93 RCSLENKM--KKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+L +M TPL LAA+ M + LI D+NA D
Sbjct: 108 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAAD 148
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G++PL AA+ + + LI ++ + + KT LH AA + +L+ H +
Sbjct: 118 GTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANR 177
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHLAAQEGHVDMCKLL 120
+AQD +PL AA++ + +K L++ +NR + + M + P +A++ H D+ +LL
Sbjct: 178 DAQDDKDETPLFLAAREGSYEASKALLDNFANR-EITDHMDRLPRDVASERLHHDIVRLL 236
Query: 121 IKH 123
+H
Sbjct: 237 DEH 239
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 6 SPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
SPLH AA+ +DI +L+++ + CS + ++TPL AA+ +++ K LIK
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSED---QRTPLMEAAENNHLEAVKYLIKAGAL 69
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSL--ENKMKKTPLHLAAQEGHVDMCKL 119
V+ +D GS+ LH AAKK ++ + L+ + + + ++ TP+ A + HVD+ KL
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129
Query: 120 LIKHQIDVNAQDIE 133
L+ D+N +D E
Sbjct: 130 LLSKGSDINIRDNE 143
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 5/135 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSL--ENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
GS+ LH AAKK ++ + L+ + + + ++ TP+ A + +VD+ KLL+ D
Sbjct: 77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
+N +D + LH+AA +DIA+IL+ + +C L N +PLH+AA+E D L
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAA-KCDLHAVNIHGDSPLHIAARENRYDCVVL 195
Query: 120 LIKHQIDVNAQDIEA 134
+ DV ++ E
Sbjct: 196 FLSRDSDVTLKNKEG 210
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 65/103 (63%), Gaps = 2/103 (1%)
Query: 31 LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE 90
+E++ K++PLH AA+ G+VD+C +L++ +++ +PL AA+ N L+ K LI+
Sbjct: 6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK 65
Query: 91 SNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKH-QIDVNAQD 131
+ ++ T LHLAA++GH ++ + L+ + Q+DVN QD
Sbjct: 66 AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD 108
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 78/130 (60%), Gaps = 3/130 (2%)
Query: 6 SPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKH-QIDVN 63
+PL AA+ N L+ K LI++ ++ T LHLAA++G+ ++ + L+ + Q+DVN
Sbjct: 46 TPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN 105
Query: 64 AQDIVGSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIK 122
QD G +P+ +A + +D+ K+L+ + + ++ + + LH AA G VD+ ++L+
Sbjct: 106 CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA 165
Query: 123 HQIDVNAQDI 132
+ D++A +I
Sbjct: 166 AKCDLHAVNI 175
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 66/113 (58%), Gaps = 2/113 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +P+ +A + +D+ K+L+ + + ++ + + LH AA G VD+ ++L+ + D+
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 63 NAQDIVGSSPLHYAAKKNKLD-IAKILIESNRCSLENKMKKTPLHLAAQEGHV 114
+A +I G SPLH AA++N+ D + L + +L+NK +TPL A+ V
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 11 AAKKNKLDIAKIL--IESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIV 68
AAK ++ K L ++S C + TPLH AA V + + L++H DV+A+D
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 76
Query: 69 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID 126
G PLH A ++A++L++ ++ + K TPLH AA +G ++CKLL++H D
Sbjct: 77 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 135
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 5 SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
S+PLH+AA N++ + + L++ ++K PLH A G+ ++ +LL+KH VN
Sbjct: 45 STPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN 104
Query: 64 AQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLL 120
D+ +PLH AA K K +I K+L++ + +N+ TPL L ++G D+ LL
Sbjct: 105 VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 161
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVG--SSPLHYAAKKNKLDIAKILIESNR-CSLENK 99
AA+ G V+ K L Q VN +DI G S+PLH+AA N++ + + L++ ++K
Sbjct: 17 AAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 75
Query: 100 MKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI 132
PLH A GH ++ +LL+KH VN D+
Sbjct: 76 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADL 108
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 11 AAKKNKLDIAKIL--IESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIV 68
AAK ++ K L ++S C + TPLH AA V + + L++H DV+A+D
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 74
Query: 69 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID 126
G PLH A ++A++L++ ++ + K TPLH AA +G ++CKLL++H D
Sbjct: 75 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 5 SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
S+PLH+AA N++ + + L++ ++K PLH A G+ ++ +LL+KH VN
Sbjct: 43 STPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN 102
Query: 64 AQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLL 120
D+ +PLH AA K K +I K+L++ + +N+ TPL L ++G D+ LL
Sbjct: 103 VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 159
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVG--SSPLHYAAKKNKLDIAKILIESNR-CSLENK 99
AA+ G V+ K L Q VN +DI G S+PLH+AA N++ + + L++ ++K
Sbjct: 15 AAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 73
Query: 100 MKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI 132
PLH A GH ++ +LL+KH VN D+
Sbjct: 74 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADL 106
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 11 AAKKNKLDIAKIL--IESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIV 68
AAK ++ K L ++S C + TPLH AA V + + L++H DV+A+D
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 78
Query: 69 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID 126
G PLH A ++A++L++ ++ + K TPLH AA +G ++CKLL++H D
Sbjct: 79 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 137
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 5 SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
S+PLH+AA N++ + + L++ ++K PLH A G+ ++ +LL+KH VN
Sbjct: 47 STPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN 106
Query: 64 AQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLL 120
D+ +PLH AA K K +I K+L++ + +N+ TPL L ++G D+ LL
Sbjct: 107 VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 163
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 30 SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG--SSPLHYAAKKNKLDIAKI 87
SL N L AA+ G V+ K L Q VN +DI G S+PLH+AA N++ + +
Sbjct: 6 SLGNSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 88 LIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI 132
L++ ++K PLH A GH ++ +LL+KH VN D+
Sbjct: 65 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL 110
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMK 101
AA+ G D ++L+ + DVNA+D G +PL+ A L+I ++L+++ + + +
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
TPLHLAA GH+++ ++L+KH DVNAQD
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQD 110
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 11 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ + D +IL+ + + +++ TPL+LA G++++ ++L+K+ DVNA D +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 70 SSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKLLIK 122
+PLH AA L+IA++L++ + ++K KT ++ G+ D+ ++L K
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
+ G +PL+ A L+I ++L+++ + + + TPLHLAA G++++ ++L+KH
Sbjct: 45 EYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKIL 88
DVNAQD G + + D+A+IL
Sbjct: 105 DVNAQDKFGKTAFDISIGNGNEDLAEIL 132
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 29 CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKIL 88
C + K TPLHLAA V + +LL++H DV+A+D G PLH A ++ ++L
Sbjct: 51 CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELL 110
Query: 89 IESNRC-SLENKMKKTPLHLAAQEGHVDMCKLLIKHQID 126
++ C + + + TPLH AA + V++C LL+ H D
Sbjct: 111 LKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD 149
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 5 SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
S+PLH AA N++ I ++L++ ++K PLH A G+ ++ +LL+KH VN
Sbjct: 59 STPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN 118
Query: 64 AQDIVGSSPLHYAAKKNKLDIAKILI 89
A D+ +PLH AA KN++++ +L+
Sbjct: 119 AMDLWQFTPLHEAASKNRVEVCSLLL 144
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Query: 14 KNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVD-MCKLLIKHQIDVNAQDIVGSSP 72
K+ LD+A S + L + KK L AA+ G + + LL ++ +A D S+P
Sbjct: 5 KSALDLAD---PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP 61
Query: 73 LHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
LH AA N++ I ++L++ ++K PLH A GH ++ +LL+KH VNA D
Sbjct: 62 LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD 121
Query: 132 I 132
+
Sbjct: 122 L 122
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILI 89
NK TPLH+AA+ + D+ ++L KH +NA D +G + LH AA L ++L+
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL 300
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 71/187 (37%), Gaps = 59/187 (31%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G PLH A ++ ++L++ C + + + TPLH AA + V++C LL+ H D
Sbjct: 91 GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150
Query: 63 NAQDIVGSSP------------LHYAAKKNKL-------DIAKI---------------- 87
+ G S L Y K + L D+AK+
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS 210
Query: 88 -----------------------LIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQ 124
L + + +NK TPLH+AA+ H D+ ++L KH
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG 270
Query: 125 IDVNAQD 131
+NA D
Sbjct: 271 AKMNALD 277
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 51 MCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAA 109
+ +LL++ +VN ++ +PLH AA++ D+ ++L + + + + + +T LH AA
Sbjct: 229 VAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA 288
Query: 110 QEGHVDMCKLLIKHQID 126
GH+ C+LL+ + D
Sbjct: 289 LAGHLQTCRLLLSYGSD 305
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 6 SPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA 64
+PLH AA++ D+ ++L + + + + + +T LH AA G++ C+LL+ + D +
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI 308
Query: 65 QDIVGSSPLHYAAKKNKLDIAKILIESN 92
+ G + AA+ + +IL ES
Sbjct: 309 ISLQGFT----AAQMGNEAVQQILSEST 332
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNRCSLENKM--KKTPLHLAAQEGYVDMCKLLIKHQI 60
+G +PLH A + + +ILI + L+ +M TPL LAA+ M + LI
Sbjct: 89 MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGHVDMCKL 119
DVNA D +G S LH+AA N +D A +L+++ ++N ++TPL LAA+EG + K+
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 208
Query: 120 LIKH 123
L+ H
Sbjct: 209 LLDH 212
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
++ +T LHLAA+ D K L++ D N QD +G +PLH A + + +ILI +
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 93 RCSLENKM--KKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
L+ +M TPL LAA+ M + LI DVNA D
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 154
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
N D G + LH AA+ ++ D AK L+E S ++++ M +TPLH A + ++LI
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 122 KHQIDVNAQDIEA 134
+++ A D++A
Sbjct: 111 RNR----ATDLDA 119
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
+G S LH+AA N +D A +L+++ ++N ++TPL LAA+EG + K+L+ H +
Sbjct: 156 LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKIL 88
+ D + P A ++ DI ++L
Sbjct: 216 RDITDHMDRLPRDIAQERMHHDIVRLL 242
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNRCSLENKM--KKTPLHLAAQEGYVDMCKLLIKHQI 60
+G +PLH A + + +ILI + L+ +M TPL LAA+ M + LI
Sbjct: 89 MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGHVDMCKL 119
DVNA D +G S LH+AA N +D A +L+++ ++N ++TPL LAA+EG + K+
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 208
Query: 120 LIKH 123
L+ H
Sbjct: 209 LLDH 212
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 29 CSLENKMKKT---PLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIA 85
SL N+ +T LHLAA D K L++ D N QD +G +PLH A + +
Sbjct: 47 ASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVF 106
Query: 86 KILIESNRCSLENKM--KKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+ILI + L+ +M TPL LAA+ M + LI DVNA D
Sbjct: 107 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 154
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
+G S LH+AA N +D A +L+++ ++N ++TPL LAA+EG + K+L+ H +
Sbjct: 156 LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKIL 88
+ D + P A ++ DI ++L
Sbjct: 216 RDITDHMDRLPRDIAQERMHHDIVRLL 242
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 38 TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILI-ESNRCSL 96
TPLH AA+ G+ + K L+ DVNA+ G++PLH AAK +I K+L+ + +
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 97 ENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQ 130
+K TP HLA + GH ++ KLL DVNA+
Sbjct: 71 RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 4 GSSPLHYAAKKNKLD-IAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G++PLH AAK + + K+L + + +K TPLHLAA+ G+ ++ KLL+ DV
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKIL 88
NA+ G++P H A K +I K+L
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 4 GSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G++PLH AAK +I K+L+ + + +K TP HLA + G+ ++ KLL DV
Sbjct: 42 GNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Query: 63 NAQDIVGSS 71
NA+ GSS
Sbjct: 102 NARSW-GSS 109
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNRCSLENKM--KKTPLHLAAQEGYVDMCKLLIKHQI 60
+G +PLH A + + +ILI + L+ +M TPL LAA+ M + LI
Sbjct: 90 MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 149
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGHVDMCKL 119
DVNA D +G S LH+AA N +D A +L+++ ++N ++TPL LAA+EG + K+
Sbjct: 150 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 209
Query: 120 LIKH 123
L+ H
Sbjct: 210 LLDH 213
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
++ +T LHLAA+ D K L++ D N QD +G +PLH A + + +ILI +
Sbjct: 55 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 114
Query: 93 RCSLENKM--KKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
L+ +M TPL LAA+ M + LI DVNA D
Sbjct: 115 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 155
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
N D G + LH AA+ ++ D AK L+E S ++++ M +TPLH A + ++LI
Sbjct: 52 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 111
Query: 122 KHQIDVNAQDIEA 134
+++ A D++A
Sbjct: 112 RNR----ATDLDA 120
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
+G S LH+AA N +D A +L+++ ++N ++TPL LAA+EG + K+L+ H +
Sbjct: 157 LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 216
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
+ D + P A ++ DI ++L E N
Sbjct: 217 RDITDHMDRLPRDIAQERMHHDIVRLLDEYN 247
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNRCSLENKM--KKTPLHLAAQEGYVDMCKLLIKHQI 60
+G +PLH A + + +ILI + L+ +M TPL LAA+ M + LI
Sbjct: 57 MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 116
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGHVDMCKL 119
DVNA D +G S LH+AA N +D A +L+++ ++N ++TPL LAA+EG + K+
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 176
Query: 120 LIKH 123
L+ H
Sbjct: 177 LLDH 180
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
++ +T LHLAA+ D K L++ D N QD +G +PLH A + + +ILI +
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 93 RCSLENKM--KKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
L+ +M TPL LAA+ M + LI DVNA D
Sbjct: 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 122
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
N D G + LH AA+ ++ D AK L+E S ++++ M +TPLH A + ++LI
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 122 KHQIDVNAQDIEA 134
+++ A D++A
Sbjct: 79 RNR----ATDLDA 87
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
+G S LH+AA N +D A +L+++ ++N ++TPL LAA+EG + K+L+ H +
Sbjct: 124 LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 183
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
+ D + P A ++ DI ++L E N
Sbjct: 184 RDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G SPLH+A ++ + + ++LI R ++ N+ TPLHLAA G+ D+ + L++++ D+
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 93
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPL 105
NA + G+ PLHYA + +A+ L+ + S+ NK + P+
Sbjct: 94 NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 137
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGHVDMCKL 119
D+N D G SPLH+A ++ + + ++LI R ++ N+ TPLHLAA GH D+ +
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 120 LIKHQIDVNA 129
L++++ D+NA
Sbjct: 86 LLQYKADINA 95
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G SPLH+A ++ + + ++LI R ++ N+ TPLHLAA G+ D+ + L++++ D+
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPL 105
NA + G+ PLHYA + +A+ L+ + S+ NK + P+
Sbjct: 99 NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 142
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGHVDMCKL 119
D+N D G SPLH+A ++ + + ++LI R ++ N+ TPLHLAA GH D+ +
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 120 LIKHQIDVNA 129
L++++ D+NA
Sbjct: 91 LLQYKADINA 100
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNRCSLENKM--KKTPLHLAAQEGYVDMCKLLIKHQI 60
+G +PLH A + + +IL+ + L+ +M TPL LAA+ M + LI
Sbjct: 54 MGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHA 113
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGHVDMCKL 119
DVNA D +G S LH+AA N +D A +L+++ ++N ++TPL LAA+EG + K+
Sbjct: 114 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKV 173
Query: 120 LIKH 123
L+ H
Sbjct: 174 LLDH 177
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
++ +T LHLAA+ D K L++ D QD +G +PLH A + + +IL+ +
Sbjct: 19 DRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 93 RCSLENKM--KKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
L+ +M TPL LAA+ M + LI DVNA D
Sbjct: 79 ATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVD 119
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
N D G + LH AA+ ++ D AK L+E S +++ M +TPLH A + ++L+
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILL 75
Query: 122 KHQIDVNAQDIEA 134
+++ A D++A
Sbjct: 76 RNR----ATDLDA 84
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
+G S LH+AA N +D A +L+++ ++N ++TPL LAA+EG + K+L+ H +
Sbjct: 121 LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFAN 180
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIE 90
+ D + P A ++ DI ++L E
Sbjct: 181 RDITDHMDRLPRDIAQERMHHDIVRLLDE 209
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 2/128 (1%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
Q GSSPLH AA + D+ +L++ N + PLHLA Q+G+ + K L+
Sbjct: 84 QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNA 143
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKL 119
N +D+ G++PL YA ++ +L++ + N T LH A E HV + +L
Sbjct: 144 KPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVEL 203
Query: 120 LIKHQIDV 127
L+ H V
Sbjct: 204 LLLHGASV 211
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 19 IAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAK 78
+AK+ ++ ++ +PLH+AA G D+ LL+KH + A++ + PLH A +
Sbjct: 69 LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ 128
Query: 79 KNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+ + K L++SN + + ++ TPL A GH ++ LL++H +NA +
Sbjct: 129 QGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN 182
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCK 118
++V +QD GSSPLH AA + D+ +L++ N + PLHLA Q+GH + K
Sbjct: 79 VNVTSQD--GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVK 136
Query: 119 LLIKHQIDVNAQDIEA 134
L+ N +D+
Sbjct: 137 CLLDSNAKPNKKDLSG 152
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 7 PLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQ 65
PLH A ++ + K L++SN + + ++ TPL A G+ ++ LL++H +NA
Sbjct: 122 PLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINAS 181
Query: 66 DIVGSSPLHYAA-KKNKLDIAKILIESNRCSLENKMKKTPLHLAAQ 110
+ G++ LH A +K+ + +L+ + NK ++T + A Q
Sbjct: 182 NNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ 227
Score = 29.6 bits (65), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 84 IAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
+AK+ ++ ++ +PLH+AA G D+ LL+KH + A++ +
Sbjct: 69 LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNAD 118
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%)
Query: 21 KILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN 80
++L + ++++ +P+H AA+ G++D K+L++H DVN D G+ P+H A ++
Sbjct: 59 ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG 118
Query: 81 KLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQI 125
+ L + + TPL LA Q G D+ +L H +
Sbjct: 119 HTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGHMV 163
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
N+ KT L + G + L+K N QD G+SP+H AA+ LD K+L+E
Sbjct: 39 NRFGKTALQVM-MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG 97
Query: 93 R-CSLENKMKKTPLHLAAQEGHVDMCKLL 120
++ + P+HLA QEGH + L
Sbjct: 98 ADVNVPDGTGALPIHLAVQEGHTAVVSFL 126
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G+SP+H AA+ LD K+L+E ++ + P+HLA QEG+ + L + D+
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDL 132
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKIL 88
+ +D G +PL A ++ D+ IL
Sbjct: 133 HRRDARGLTPLELALQRGAQDLVDIL 158
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 43 AAQEGYV-DMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK 101
AA G V ++ +LL + + +A + G + L + ++L + ++++
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSG 74
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+P+H AA+ G +D K+L++H DVN D
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEHGADVNVPD 104
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
G+ P+H A ++ + L + + TPL LA Q G D+ +L H +
Sbjct: 106 TGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGHMV 163
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Query: 8 LHYAAKKNKLDIAKILIESNRC--SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQ 65
LH+AA N++D+ K I L + TPLH A ++G++ M L+K+ D +
Sbjct: 46 LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI 105
Query: 66 DIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGH-VDMCKLLIKH 123
D G S +H AA+ I LI + + ++ TPL AA H VD +LL+
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165
Query: 124 QIDVNAQD 131
+ VN D
Sbjct: 166 NVSVNLGD 173
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC--SLENKM 100
A Q G + C+ L++ DV D + LH+AA N++D+ K I L +
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75
Query: 101 KKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA 134
TPLH A ++GH+ M L+K+ D + D E
Sbjct: 76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEG 109
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 53/103 (51%)
Query: 21 KILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN 80
++L + ++++ +P+H AA+ G++D K+L++H DVN D G+ P+H A ++
Sbjct: 53 ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG 112
Query: 81 KLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKH 123
+ L + + TPL LA Q G D+ +L H
Sbjct: 113 HTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
N+ KT L + G + L+K N QD G+SP+H AA+ LD K+L+E
Sbjct: 33 NRFGKTALQVM-MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG 91
Query: 93 R-CSLENKMKKTPLHLAAQEGHVDMCKLL 120
++ + P+HLA QEGH + L
Sbjct: 92 ADVNVPDGTGALPIHLAVQEGHTAVVSFL 120
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G+SP+H AA+ LD K+L+E ++ + P+HLA QEG+ + L + D+
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDL 126
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKIL 88
+ +D G +PL A ++ D+ IL
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDIL 152
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 43 AAQEGYV-DMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK 101
AA G V ++ +LL + + +A + G + L + ++L + ++++
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSG 68
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+P+H AA+ G +D K+L++H DVN D
Sbjct: 69 TSPVHDAARTGFLDTLKVLVEHGADVNVPD 98
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKH 58
G+ P+H A ++ + L + + TPL LA Q G D+ +L H
Sbjct: 100 TGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 34 KMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR 93
K T LH+AA +GY ++ KLLI+ + DVN +D G +PLH AA K + +IL+E N
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE-NL 255
Query: 94 CSLE--NKMKKTPLHLAAQE 111
C +E NK+ +T +A ++
Sbjct: 256 CDMEAVNKVGQTAFDVADED 275
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 29/160 (18%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G + LH A + +D+ K L+E+ + + PLH AA GY+D+ + LI V
Sbjct: 73 GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132
Query: 63 NAQDIVGSSPLH-------YAAKKNKLDIAKILIESNRCSLENKMKK------------- 102
A + G +PL +N+++ + IE+ R E M +
Sbjct: 133 GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192
Query: 103 --------TPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA 134
T LH+AA +G+ ++ KLLI+ + DVN +D +
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDG 232
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G + LH AA K ++ K+LI++ ++++ TPLH AA G + C++L+++ D+
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258
Query: 63 NAQDIVGSSPLHYA 76
A + VG + A
Sbjct: 259 EAVNKVGQTAFDVA 272
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 4 GSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ-ID 61
G PLH AA LDIA+ LI + N TPL +A +E ++ + + Q +D
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD 165
Query: 62 VNA----------------------QDI----VGSSPLHYAAKKNKLDIAKILIESNR-C 94
+ A D+ G + LH AA K ++ K+LI++
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV 225
Query: 95 SLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNA 129
++++ TPLH AA G + C++L+++ D+ A
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA 260
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 55 LIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGH 113
L++ D+N ++ G + LH A + +D+ K L+E+ + + PLH AA G+
Sbjct: 59 LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118
Query: 114 VDMCKLLIKHQIDVNAQDIEA 134
+D+ + LI V A + E
Sbjct: 119 LDIAEYLISQGAHVGAVNSEG 139
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PL +AA ++ + + L+++ L K +++ L LA +GY D+ K+L+ +DV
Sbjct: 34 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 93
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLI 121
N D G +PL YA N + K+L+ES ++E + LA G+ + +++
Sbjct: 94 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 153
Query: 122 KH 123
H
Sbjct: 154 SH 155
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 40 LHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLEN 98
+H A +G + I+ + +N D G +PL +AA ++ + + L+++ L
Sbjct: 5 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 64
Query: 99 KMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
K +++ L LA +G+ D+ K+L+ +DVN D
Sbjct: 65 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 97
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PL +AA ++ + + L+++ L K +++ L LA +GY D+ K+L+ +DV
Sbjct: 52 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 111
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLI 121
N D G +PL YA N + K+L+ES ++E + LA G+ + +++
Sbjct: 112 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 171
Query: 122 KH 123
H
Sbjct: 172 SH 173
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 40 LHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLEN 98
+H A +G + I+ + +N D G +PL +AA ++ + + L+++ L
Sbjct: 23 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 82
Query: 99 KMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
K +++ L LA +G+ D+ K+L+ +DVN D
Sbjct: 83 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 115
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PL +AA ++ + + L+++ L K +++ L LA +GY D+ K+L+ +DV
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 95
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLI 121
N D G +PL YA N + K+L+ES ++E + LA G+ + +++
Sbjct: 96 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155
Query: 122 KH 123
H
Sbjct: 156 SH 157
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 40 LHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLEN 98
+H A +G + I+ + +N D G +PL +AA ++ + + L+++ L
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66
Query: 99 KMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
K +++ L LA +G+ D+ K+L+ +DVN D
Sbjct: 67 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 99
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 55/105 (52%)
Query: 21 KILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN 80
++L + ++++ +P+H AA+ G++D K+L++H DVNA D GS P+H A ++
Sbjct: 59 ELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREG 118
Query: 81 KLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQI 125
+ L + + TPL LA Q G ++ +L H +
Sbjct: 119 HSSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGHMM 163
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 43 AAQEGYV-DMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK 101
AA G V ++ +LL + + +A + G + L + ++L + ++++
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDASG 74
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+P+H AA+ G +D K+L++H DVNA D
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEHGADVNALD 104
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
GS P+H A ++ + L + + TPL LA Q G ++ +L H +
Sbjct: 106 TGSLPIHLAIREGHSSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGHMM 163
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 55/105 (52%)
Query: 21 KILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN 80
++L + ++++ +P+H AA+ G++D K+L++H DVNA D GS P+H A ++
Sbjct: 61 ELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREG 120
Query: 81 KLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQI 125
+ L + + TPL LA Q G ++ +L H +
Sbjct: 121 HSSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGHMM 165
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 43 AAQEGYV-DMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK 101
AA G V ++ +LL + + +A + G + L + ++L + ++++
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDASG 76
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+P+H AA+ G +D K+L++H DVNA D
Sbjct: 77 TSPVHDAARTGFLDTLKVLVEHGADVNALD 106
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
GS P+H A ++ + L + + TPL LA Q G ++ +L H +
Sbjct: 108 TGSLPIHLAIREGHSSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGHMM 165
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCS-LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PL +A+ +++ + L+E + K +++ L LA+ GY D+ LL++ +D+
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDI 95
Query: 63 NAQDIVGSSPLHYAAKKNKLD-IAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
N D G +PL YA + N + + +L + E TP+ LA G+ + +++
Sbjct: 96 NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE 155
Query: 122 KH 123
H
Sbjct: 156 NH 157
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 40 LHLAAQEGYVDMCKL-LIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCS-LE 97
+H A +G +D K L K VN D G +PL +A+ +++ + L+E +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 98 NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
K +++ L LA+ G+ D+ LL++ +D+N D
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Query: 23 LIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKL 82
LI SN + + + PLH AA+ G + + + +++ VN D GS+ L++A
Sbjct: 60 LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHK 119
Query: 83 DIAKILIESNRCSL--ENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
DI + L L +NK+ T LH AA +G+ D+ +LL+ + ++IE
Sbjct: 120 DIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE 172
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 7/106 (6%)
Query: 31 LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE 90
N +T LH+A+ +G + + L+++ D N +D G +PLH A L + ++L++
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 91 S----NRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI 132
N +N +PLH AA+ GHVD+ KLL+ + NA +I
Sbjct: 65 HKALVNTTGYQN---DSPLHDAAKNGHVDIVKLLLSYGASRNAVNI 107
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G + LH A+ K + + L+++ ++++ TPLH A G++ + +LL++H+ V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILI 89
N SPLH AAK +DI K+L+
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIK 57
G +PLH A L + ++L++ N +N +PLH AA+ G+VD+ KLL+
Sbjct: 41 HAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQND---SPLHDAAKNGHVDIVKLLLS 97
Query: 58 HQIDVNAQDIVGSSPLHYA 76
+ NA +I G P+ Y
Sbjct: 98 YGASRNAVNIFGLRPVDYT 116
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 4 GSSPLHYAAKKNKLDIA-KILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
GS+ L +A K N+L IA K+L + + + ++ KTPL + GY +M L++H +V
Sbjct: 68 GSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV 127
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIE 90
N +++ G +PL A+K + +I K L+E
Sbjct: 128 NDRNLEGETPLIVASKYGRSEIVKKLLE 155
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 37 KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIA-KILIESNRCS 95
+TPL +A G + L+++ + +DI GS+ L +A K N+L IA K+L + + +
Sbjct: 36 RTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN 95
Query: 96 LENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA 134
++ KTPL + G+ +M L++H +VN +++E
Sbjct: 96 TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG 134
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCS-LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PL +A+ +++ + L+E + K +++ L LA+ GY D+ LL++ +D+
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDI 95
Query: 63 NAQDIVGSSPLHYAAKKNKLD-IAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
N D G +PL YA N + + +L + E TP+ LA G+ + +++
Sbjct: 96 NIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE 155
Query: 122 KH 123
H
Sbjct: 156 NH 157
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 40 LHLAAQEGYVDMCKL-LIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCS-LE 97
+H A +G +D K L K VN D G +PL +A+ +++ + L+E +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 98 NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
K +++ L LA+ G+ D+ LL++ +D+N D
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 72/137 (52%), Gaps = 9/137 (6%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI-D 61
G++PL+ A N ++IAK LI+ +L+N + +P A +G ++ ++KH D
Sbjct: 39 GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPD 98
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNR--CSLENKMKKTPL--HLAAQEG---HV 114
+N + G + L AA+K +D K+L+E R +N T L + +EG +
Sbjct: 99 LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158
Query: 115 DMCKLLIKHQIDVNAQD 131
D+ KLL+++ D + +D
Sbjct: 159 DIVKLLMENGADQSIKD 175
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESNR--CSLENKMKKTPL--HLAAQEG---YVDMCKL 54
+ G + L AA+K +D K+L+E R +N T L + +EG Y D+ KL
Sbjct: 104 RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163
Query: 55 LIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
L+++ D + +D G + + YA +K +I+KIL + N
Sbjct: 164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLL 120
V+ D G++PL+ A N ++IAK LI+ +L+N + +P A +G ++ +
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91
Query: 121 IKH 123
+KH
Sbjct: 92 LKH 94
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 66/141 (46%), Gaps = 13/141 (9%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH A + ++ DI ++L+ L K TP LAA G V + KL + DV
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV 98
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKK----------TPLHLAAQE 111
N D G + AA K+ K L + +L K K+ T L AA++
Sbjct: 99 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158
Query: 112 GHVDMCKLLIKHQ-IDVNAQD 131
GHV++ K+L+ DVNA D
Sbjct: 159 GHVEVLKILLDEMGADVNACD 179
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 12/142 (8%)
Query: 1 RQVGSSPLHYAAKKNKLDIAKILIES-----NRCSLENKMKKTPLH--LAAQEGYVD-MC 52
R+ G++ L AA+K +++ KIL++ N C +N + +H L++ + V+ +
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNAC--DNMGRNALIHALLSSDDSDVEAIT 202
Query: 53 KLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQ 110
LL+ H DVN + G +PL A +K L + + L+E + + KT L LA +
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE 262
Query: 111 EGHVDMCKLLIKHQIDVNAQDI 132
+ +LL K + D+
Sbjct: 263 LKLKKIAELLCKRGASTDCGDL 284
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 66/141 (46%), Gaps = 13/141 (9%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCS-LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH A + ++ DI ++L+ L K TP LAA G V + KL + DV
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV 118
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKK----------TPLHLAAQE 111
N D G + AA K+ K L + +L K K+ T L AA++
Sbjct: 119 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 178
Query: 112 GHVDMCKLLIKHQ-IDVNAQD 131
GHV++ K+L+ DVNA D
Sbjct: 179 GHVEVLKILLDEMGADVNACD 199
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 12/142 (8%)
Query: 1 RQVGSSPLHYAAKKNKLDIAKILIES-----NRCSLENKMKKTPLH--LAAQEGYVD-MC 52
R+ G++ L AA+K +++ KIL++ N C +N + +H L++ + V+ +
Sbjct: 165 RKGGATALMDAAEKGHVEVLKILLDEMGADVNAC--DNMGRNALIHALLSSDDSDVEAIT 222
Query: 53 KLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQ 110
LL+ H DVN + G +PL A +K L + + L+E + + KT L LA +
Sbjct: 223 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE 282
Query: 111 EGHVDMCKLLIKHQIDVNAQDI 132
+ +LL K + D+
Sbjct: 283 LKLKKIAELLCKRGASTDCGDL 304
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 IAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAK 78
+ +I+ E + SL N T LH A G+ ++ K L++ ++VNA D G +PLH AA
Sbjct: 53 VQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS 112
Query: 79 KNKLDIAKILIESNRCSLENKMKKTPLHLAA------QEGHVDMCKLLIKHQ 124
N + + K L+ES M + + AA +EG+ + L Q
Sbjct: 113 CNNVQVCKFLVESGAAVF--AMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 84 IAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+ +I+ E + SL N T LH A GH ++ K L++ ++VNA D
Sbjct: 53 VQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAA------QEGYVDMCKLLIK 57
G +PLH AA N + + K L+ES M + + AA +EGY + L
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAVF--AMTYSDMQTAADKCEEMEEGYTQCSQFLYG 160
Query: 58 HQ 59
Q
Sbjct: 161 VQ 162
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19 IAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAK 78
+ +I+ E + SL N T LH A G+ ++ K L++ ++VNA D G +PLH AA
Sbjct: 53 VQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS 112
Query: 79 KNKLDIAKILIESNRCSLENKMKKTPLHLAA------QEGHVDMCKLLIKHQ 124
N + + K L+ES M + + AA +EG+ + L Q
Sbjct: 113 CNNVQVCKFLVESGAAVF--AMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 84 IAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+ +I+ E + SL N T LH A GH ++ K L++ ++VNA D
Sbjct: 53 VQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Score = 29.6 bits (65), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAA------QEGYVDMCKLLIK 57
G +PLH AA N + + K L+ES M + + AA +EGY + L
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAVF--AMTYSDMQTAADKCEEMEEGYTQCSQFLYG 160
Query: 58 HQ 59
Q
Sbjct: 161 VQ 162
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 30 SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILI 89
+ +N +++TPLHLA ++ + L+ D +D G++PLH A ++ L +L
Sbjct: 36 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 95
Query: 90 ESNRCSL---------ENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+S C+ N T LHLA+ G++ + +LL+ DVNAQ+
Sbjct: 96 QS--CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE 144
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 13/134 (9%)
Query: 6 SPLHYAAKKNKLDIAKILIESNRC--SLENKMKKTPLHLAAQEGYVDMCKLLIK------ 57
+PLH A N+ +IA+ L+ + C L + TPLHLA ++G + +L +
Sbjct: 44 TPLHLAVITNQPEIAEALLGAG-CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 102
Query: 58 -HQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHLAAQEGHV 114
H I + A + G + LH A+ L I ++L+ ++ + E +T LHLA +
Sbjct: 103 LHSI-LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP 161
Query: 115 DMCKLLIKHQIDVN 128
D+ LL+K DVN
Sbjct: 162 DLVSLLLKCGADVN 175
Score = 32.7 bits (73), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC--SLENKMKKTPLHLAAQEG 112
+N Q+ + +PLH A N+ +IA+ L+ + C L + TPLHLA ++G
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAG-CDPELRDFRGNTPLHLACEQG 86
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G + LH A+ L I ++L+ ++ + E +T LHLA D+ LL+K D
Sbjct: 114 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 173
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLEN 98
VN G SP + I + L + +LEN
Sbjct: 174 VNRVTYQGYSPYQLTWGRPSTRIQQQL---GQLTLEN 207
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 30 SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILI 89
+ +N +++TPLHLA ++ + L+ D +D G++PLH A ++ L +L
Sbjct: 39 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 98
Query: 90 ESNRCSL---------ENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+S C+ N T LHLA+ G++ + +LL+ DVNAQ+
Sbjct: 99 QS--CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE 147
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 13/134 (9%)
Query: 6 SPLHYAAKKNKLDIAKILIESNRC--SLENKMKKTPLHLAAQEGYVDMCKLLIK------ 57
+PLH A N+ +IA+ L+ + C L + TPLHLA ++G + +L +
Sbjct: 47 TPLHLAVITNQPEIAEALLGAG-CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 58 -HQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHLAAQEGHV 114
H I + A + G + LH A+ L I ++L+ ++ + E +T LHLA +
Sbjct: 106 LHSI-LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP 164
Query: 115 DMCKLLIKHQIDVN 128
D+ LL+K DVN
Sbjct: 165 DLVSLLLKCGADVN 178
Score = 32.7 bits (73), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC--SLENKMKKTPLHLAAQEG 112
+N Q+ + +PLH A N+ +IA+ L+ + C L + TPLHLA ++G
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAG-CDPELRDFRGNTPLHLACEQG 89
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G + LH A+ L I ++L+ ++ + E +T LHLA D+ LL+K D
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLEN 98
VN G SP + I + L + +LEN
Sbjct: 177 VNRVTYQGYSPYQLTWGRPSTRIQQQL---GQLTLEN 210
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMK 101
AA+ G D ++L+ + DV A+D GS+PLH AA+ L++ K+L+E+ + ++K
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 102 KTPLHLAAQEGHVDMCKLL 120
KT ++ G+ D+ ++L
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 11 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ + D +IL+ + + ++K TPLHLAA+ G++++ KLL++ DVNAQD G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 70 SSPLHYAAKKNKLDIAKIL 88
+ + D+A+IL
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 76 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
AA+ + D +IL+ + + ++K TPLHLAA+ GH+++ KLL++ DVNAQD
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLL 55
GS+PLH AA+ L++ K+L+E+ + ++K KT ++ G D+ ++L
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK---TPLHLAAQEGYVDMCKLLIKHQI 60
G +P H A L++ K L + NK+ T LHLA + + ++ + LI++
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKIL--IESNRCSLENKMKKTPLHLAAQEGHVDMCK 118
V +D PLH AA L + ++L + + + ++K TPL A EGH D
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 119 LLIK 122
LL++
Sbjct: 192 LLVE 195
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK---TPLHLAAQEGYVDMCKLLIKHQI 60
G +P H A L++ K L + NK+ T LHLA + + ++ + LI++
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKIL--IESNRCSLENKMKKTPLHLAAQEGHVDMCK 118
V +D PLH AA L + ++L + + + ++K TPL A EGH D
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 119 LLIK 122
LL++
Sbjct: 192 LLVE 195
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK---TPLHLAAQEGYVDMCKLLIKHQI 60
G +P H A L++ K L + NK+ T LHLA + + ++ + LI++
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKIL--IESNRCSLENKMKKTPLHLAAQEGHVDMCK 118
V +D PLH AA L + ++L + + + ++K TPL A EGH D
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 119 LLIK 122
LL++
Sbjct: 192 LLVE 195
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMK 101
AA+ G D ++L+ + DV A+D GS+PLH AA+ L++ K+L+E+ ++K
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 102 KTPLHLAAQEGHVDMCKLL 120
KT ++ G+ D+ ++L
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 11 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ + D +IL+ + + ++K TPLHLAA+ G++++ KLL++ DV AQD G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 70 SSPLHYAAKKNKLDIAKIL 88
+ + D+A+IL
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 76 AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
AA+ + D +IL+ + + ++K TPLHLAA+ GH+++ KLL++ DV AQD
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLL 55
GS+PLH AA+ L++ K+L+E+ ++K KT ++ G D+ ++L
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G + LH A + ++L+E ++ +++ K ++PL A + + M +LL++H +
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCK 118
VNAQ GSS LH A+ + L + + L+ S SL+N TPL +A +D+ +
Sbjct: 176 VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 10/141 (7%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE-----SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKH 58
G +PLH A + L L+ + N +++TPLHLA + +LL+
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68
Query: 59 QIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES---NRCSLE--NKMKKTPLHLAAQEGH 113
A D G + H A + + L++S LE N T LH+A
Sbjct: 69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128
Query: 114 VDMCKLLIKHQIDVNAQDIEA 134
+ +LL++ D++A DI++
Sbjct: 129 QETVQLLLERGADIDAVDIKS 149
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Query: 6 SPLHYAAKKNKLDIAKILIESNRCSLE-NKMKKTPLHLAAQEGYVDMCKLLIKH----QI 60
+PLH A + ++L+ + + ++ +T HLA + + L+ +
Sbjct: 48 TPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL 107
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHLAAQEGHVDMCK 118
D+ A++ G + LH A + ++L+E ++ +++ K ++PL A + + M +
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 119 LLIKHQIDVNAQ 130
LL++H +VNAQ
Sbjct: 168 LLLQHGANVNAQ 179
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 38 TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSL 96
TPL LAA+ M + LI DVNA D +G S LH+AA N +D A +L+++ +
Sbjct: 17 TPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 76
Query: 97 ENKMKKTPLHLAAQEGHVDMCKLLIKH 123
+N ++TPL LAA+EG + K+L+ H
Sbjct: 77 QNNKEETPLFLAAREGSYETAKVLLDH 103
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
+G S LH+AA N +D A +L+++ ++N ++TPL LAA+EG + K+L+ H +
Sbjct: 47 LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFAN 106
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIE 90
+ D + P A ++ DI ++L E
Sbjct: 107 RDITDHMDRLPRDIAQERMHHDIVRLLDE 135
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMK 101
AA+ G D ++L+ + DVNA+D G +PLH AA++ L+I ++L+++ + ++K
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 102 KTPLHLAAQEGHVDMCKLLIK 122
KT ++ G+ D+ ++L K
Sbjct: 69 KTAFDISIDNGNEDLAEILQK 89
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 11 AAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA+ + D +IL+ + + ++K TPLHLAA+EG++++ ++L+K DVNAQD G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 70 SSPLHYAAKKNKLDIAKIL 88
+ + D+A+IL
Sbjct: 69 KTAFDISIDNGNEDLAEIL 87
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 76 AAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
AA+ + D +IL+ + + ++K TPLHLAA+EGH+++ ++L+K DVNAQD
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIK 57
G +PLH AA++ L+I ++L+++ + ++K KT ++ G D+ ++L K
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 89
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 21 KILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN 80
++L+ L+++ +H AA+ G++D + L++ Q DVN +D G+ PLH AAK+
Sbjct: 55 RLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 81 KLDIAKILI 89
L + + L+
Sbjct: 115 HLRVVEFLV 123
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 47 GYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPL 105
G ++ + L+ + + +D G++ +H AA+ LD + L+E ++E+ PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 106 HLAAQEGHVDMCKLLIKH 123
HLAA+EGH+ + + L+KH
Sbjct: 108 HLAAKEGHLRVVEFLVKH 125
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%)
Query: 21 KILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN 80
++L+ L+++ +H AA+ G++D + L+++Q DVN +D G+ PLH AAK+
Sbjct: 55 RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEG 114
Query: 81 KLDIAKILI 89
L + + L+
Sbjct: 115 HLRVVEFLV 123
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 47 GYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPL 105
G ++ + L+ + + +D G + +H AA+ LD + L+E+ ++E+ PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
Query: 106 HLAAQEGHVDMCKLLIKH 123
HLAA+EGH+ + + L+KH
Sbjct: 108 HLAAKEGHLRVVEFLVKH 125
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 21 KILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN 80
++L+ L+++ +H AA+ G++D + L++ Q DVN +D G+ PLH AAK+
Sbjct: 55 RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 81 KLDIAKILI 89
L + + L+
Sbjct: 115 HLRVVEFLV 123
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 47 GYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPL 105
G ++ + L+ + + +D G + +H AA+ LD + L+E ++E+ PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 106 HLAAQEGHVDMCKLLIKH 123
HLAA+EGH+ + + L+KH
Sbjct: 108 HLAAKEGHLRVVEFLVKH 125
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 21 KILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN 80
++L+ L+++ +H AA+ G++D + L++ Q DVN +D G+ PLH AAK+
Sbjct: 55 RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 81 KLDIAKILI 89
L + + L+
Sbjct: 115 HLRVVEFLV 123
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 47 GYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPL 105
G ++ + L+ + + +D G + +H AA+ LD + L+E ++E+ PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 106 HLAAQEGHVDMCKLLIKH 123
HLAA+EGH+ + + L+KH
Sbjct: 108 HLAAKEGHLRVVEFLVKH 125
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 6 SPLHYAA-KKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA 64
SP+H AA ++L + ++ + ++ +PLH A G++ K+L+KH VN
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 65 QDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQ 124
+PL A D +L++ +P+H AA+ GHV+ LI +
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG 124
Query: 125 IDVN 128
+++
Sbjct: 125 GNID 128
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 58/129 (44%)
Query: 6 SPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQ 65
+PL A D +L++ +P+H AA+ G+V+ LI + +++ +
Sbjct: 71 TPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHK 130
Query: 66 DIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQI 125
+PL+ A + + K L+ES + K + +PLH A+ ++ LL+
Sbjct: 131 ISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEELACLLMDFGA 190
Query: 126 DVNAQDIEA 134
D A++ E
Sbjct: 191 DTQAKNAEG 199
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 5 SSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA 64
+PL+ A + + K L+ES + K + +PLH A+ ++ LL+ D A
Sbjct: 135 GTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEELACLLMDFGADTQA 194
Query: 65 QDIVGSSPLHYAAKKNKLDIAKILIE 90
++ G P+ ++ L A++ +E
Sbjct: 195 KNAEGKRPVELVPPESPL--AQLFLE 218
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 6 SPLHYAA-KKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA 64
SP+H AA ++L + ++ + ++ +PLH A G++ K+L+KH VN
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 65 QDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQ 124
+PL A D +L++ +P+H AA+ GHV+ LI +
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG 180
Query: 125 IDVN 128
+++
Sbjct: 181 GNID 184
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 57/129 (44%)
Query: 6 SPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQ 65
+PL A D +L++ +P+H AA+ G+V+ LI + +++ +
Sbjct: 127 TPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHK 186
Query: 66 DIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQI 125
+PL+ A + + K L+ES + K + +PLH + ++ LL+
Sbjct: 187 ISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGA 246
Query: 126 DVNAQDIEA 134
D A++ E
Sbjct: 247 DTQAKNAEG 255
Score = 32.7 bits (73), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 5 SSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA 64
+PL+ A + + K L+ES + K + +PLH + ++ LL+ D A
Sbjct: 191 GTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQA 250
Query: 65 QDIVGSSPLHYAAKKNKLDIAKILIESNRCSL 96
++ G P+ ++ L A++ +E SL
Sbjct: 251 KNAEGKRPVELVPPESPL--AQLFLEREGASL 280
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 47 GYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPL 105
G ++ + L+ + + +D G + +H AA+ +LD + L+E ++E+ PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 106 HLAAQEGHVDMCKLLIKH 123
HLAA+EGH+ + + L+KH
Sbjct: 108 HLAAKEGHLRVVEFLVKH 125
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 21 KILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN 80
++L+ L+++ +H AA+ G +D + L++ Q DVN +D G+ PLH AAK+
Sbjct: 55 RLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 81 KLDIAKILI 89
L + + L+
Sbjct: 115 HLRVVEFLV 123
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 4 GSSPLHYAAKKNKLDIAKILI--ESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G + LHYAA+ + I K L+ + + +++ KTP+ LAAQEG +++ LI+
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE 97
V A D + A N +I I +RC E
Sbjct: 339 VEAVDATDHTARQLAQANNHHNIVDIF---DRCRPE 371
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 69 GSSPLHYAAKKNKLDIAKILI--ESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID 126
G + LHYAA+ + I K L+ + + +++ KTP+ LAAQEG +++ LI+
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 127 VNAQD 131
V A D
Sbjct: 339 VEAVD 343
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
++ +T L LA G VD+ K L+ + DVN QD GS+ L A + +IA +L+
Sbjct: 180 SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVP 239
Query: 93 RC--SLENKMKKTPLHLAAQEGHVDMCKLL 120
C SL ++ T L +A G ++ +L
Sbjct: 240 SCDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 33.1 bits (74), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 29/130 (22%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSL--ENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G++ LHY+ + + L++S C + +N+ +P+ L A +K Q D
Sbjct: 111 GNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA--------TLKTQDD 162
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
+ + ++ N + ++ +T L LA G VD+ K L+
Sbjct: 163 IET-------------------VLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALL 203
Query: 122 KHQIDVNAQD 131
+ DVN QD
Sbjct: 204 ACEADVNVQD 213
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 42 LAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAK-ILIESNRCSLENKM 100
A + G +D K + DVN G PLHYAA +L+I + +L++ + +K
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 101 KKTPLHLAAQEGHVDMCKLLIKHQID 126
TPL A EGHV KLL+ D
Sbjct: 73 HITPLLSAVYEGHVSCVKLLLSKGAD 98
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 4 GSSPLHYAAKKNKLDIAK-ILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G PLHYAA +L+I + +L++ + +K TPL A EG+V KLL+ D
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 10 YAAKKNKLDIAKILI----ESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQ 65
+A K LD K + + NR +LE K PLH AA G +++ + L+ D+NA
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNR-TLEGGRK--PLHYAADCGQLEILEFLLLKGADINAP 69
Query: 66 DIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQE 111
D +PL A + + K+L+ +K K P L A E
Sbjct: 70 DKHHITPLLSAVYEGHVSCVKLLLSKGA----DKTVKGPDGLTAFE 111
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 75 YAAKKNKLDIAKILI----ESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQ 130
+A K LD K + + NR +LE K PLH AA G +++ + L+ D+NA
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNR-TLEGGRK--PLHYAADCGQLEILEFLLLKGADINAP 69
Query: 131 D 131
D
Sbjct: 70 D 70
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 42 LAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAK-ILIESNRCSLENKM 100
A + G +D K + DVN G PLHYAA +L+I + +L++ + +K
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 101 KKTPLHLAAQEGHVDMCKLLIKHQID 126
TPL A EGHV KLL+ D
Sbjct: 68 HITPLLSAVYEGHVSCVKLLLSKGAD 93
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 4 GSSPLHYAAKKNKLDIAK-ILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G PLHYAA +L+I + +L++ + +K TPL A EG+V KLL+ D
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 10 YAAKKNKLDIAKILI----ESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQ 65
+A K LD K + + NR +LE K PLH AA G +++ + L+ D+NA
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNR-TLEGGRK--PLHYAADCGQLEILEFLLLKGADINAP 64
Query: 66 DIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQE 111
D +PL A + + K+L+ +K K P L A E
Sbjct: 65 DKHHITPLLSAVYEGHVSCVKLLLSKGA----DKTVKGPDGLTALE 106
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 75 YAAKKNKLDIAKILI----ESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQ 130
+A K LD K + + NR +LE K PLH AA G +++ + L+ D+NA
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNR-TLEGGRK--PLHYAADCGQLEILEFLLLKGADINAP 64
Query: 131 D 131
D
Sbjct: 65 D 65
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 23/151 (15%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNRCSLENK--MKKTPLHLAAQEGYVDMCKLLIKHQI 60
+ SPL AAK+N + L++ C + + M +T LH+AA ++ +L++
Sbjct: 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61
Query: 61 DVNAQDIV-----GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKT------------ 103
++ + + G + LH A +++ + L+ + S+ + +
Sbjct: 62 ELVFEPMTSELYEGQTALHIAVINQNVNLVRALL-ARGASVSARATGSVFHYRPHNLIYY 120
Query: 104 ---PLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
PL AA G ++ +LLI+H D+ AQD
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEHGADIRAQD 151
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 39 PLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHY----AAKKNKLDIAKILIESNRC 94
PL AA G ++ +LLI+H D+ AQD +G++ LH K + +L+ +
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183
Query: 95 ----SLE---NKMKKTPLHLAAQEGHVDMCKLLIK 122
SLE N TP LA EG++ M + L++
Sbjct: 184 DHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 67 IVGSSPLHYAAKKNKLDIAKILIESNRCSLENK--MKKTPLHLAAQEGHVDMCKLLIK 122
++ SPL AAK+N + L++ C + + M +T LH+AA +++ +L++
Sbjct: 1 MIWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLME 58
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 40 LHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC-SLEN 98
+H+AA++G D + LI+ + Q+ G + LH A K +D AK L SL +
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH 83
Query: 99 KMKKTPLHLAAQEGHVDMCKLLIK 122
K P+HLA D+ L++
Sbjct: 84 GQK--PIHLAVXANKTDLVVALVE 105
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 62/160 (38%), Gaps = 30/160 (18%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES------------NRCS----------LENKMKKTPLH 41
G P+H A NK D+ L+E N C +++ +T LH
Sbjct: 84 GQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTALH 143
Query: 42 LAAQEG--YVDMCKLLIKHQIDVNAQDIVGSSPLHYAAK---KNKLDIAKILIESN---R 93
G Y++ K+L++ A+D +PL A + + LD+ + S R
Sbjct: 144 WCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVPSKSSLR 203
Query: 94 CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
NK + LH A D+ ++ IDVN +D E
Sbjct: 204 LDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNE 243
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 26 SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIA 85
S R NK + LH A + D+ ++ IDVN +D + PL+ + + + +
Sbjct: 201 SLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAXVLLT 260
Query: 86 KILIE 90
K L++
Sbjct: 261 KELLQ 265
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 4/128 (3%)
Query: 7 PLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA 64
PLH AA I KIL+ S + ++K T L+ A G KL +K +
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDK-GNTALYYAVDSGNXQTVKLFVKKNWRLXF 123
Query: 65 QDIVGS-SPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKH 123
G + ++A N + I + + + + + +H+ + GHVD LL+ +
Sbjct: 124 YGKTGWKTSFYHAVXLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDXXILLLDY 183
Query: 124 QIDVNAQD 131
N +
Sbjct: 184 XTSTNTNN 191
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK-KTPLHLAAQEGYVDMCKLLIKHQIDV 62
G S +YA N + + L+ N +L+N ++ + PLH AA + K+L+ +D
Sbjct: 31 GHSASYYAIADNNVRLVCTLL--NAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDD 88
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKM-KKTPLHLAAQEGHVDMCKLL 120
+ D G++ L+YA K+ ++ N R K KT + A V +
Sbjct: 89 SQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIVSYF 148
Query: 121 I 121
+
Sbjct: 149 L 149
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 5 SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
++PL A N L + L+++ + + + PLH A G+ + L +K D+
Sbjct: 236 ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Query: 64 AQDIVGSSPLHYAAKKNKLDIAKIL 88
A+D G PL A + DI +L
Sbjct: 296 ARDSEGRDPLTIAMETANADIVTLL 320
Score = 32.7 bits (73), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 56 IKHQIDVN----AQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQ 110
+ H DVN QD ++PL A N L + L+++ + + + PLH A
Sbjct: 220 LAHGADVNWVNGGQD--NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277
Query: 111 EGHVDMCKLLIKHQIDVNAQDIEA 134
GH + L +K D+ A+D E
Sbjct: 278 LGHTGLACLFLKRGADLGARDSEG 301
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
Q ++PL A N L + L+++ + + + PLH A G+ + L +K
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKIL 88
D+ A+D G PL A + DI +L
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 32.7 bits (73), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 56 IKHQIDVN----AQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQ 110
+ H DVN QD ++PL A N L + L+++ + + + PLH A
Sbjct: 220 LAHGADVNWVNGGQD--NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277
Query: 111 EGHVDMCKLLIKHQIDVNAQDIEA 134
GH + L +K D+ A+D E
Sbjct: 278 LGHTGLACLFLKRGADLGARDSEG 301
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 5 SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
++PL A N L + L+++ + + + PLH A G+ + L +K D+
Sbjct: 236 ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Query: 64 AQDIVGSSPLHYAAKKNKLDIAKIL 88
A+D G PL A + DI +L
Sbjct: 296 ARDSEGRDPLTIAMETANADIVTLL 320
Score = 32.7 bits (73), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 56 IKHQIDVN----AQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQ 110
+ H DVN QD ++PL A N L + L+++ + + + PLH A
Sbjct: 220 LAHGADVNWVNGGQD--NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277
Query: 111 EGHVDMCKLLIKHQIDVNAQDIEA 134
GH + L +K D+ A+D E
Sbjct: 278 LGHTGLACLFLKRGADLGARDSEG 301
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR--CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G +PLH A ++ ++L ++ E +TPLHLA + + +LL+K D
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKIL 88
A+ G +PL A + +A++L
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLL 244
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 32 ENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN-AQDIVGSSPLHYAAKKNKLDIAKILIE 90
EN TPLH+A +M +LL D+N + G +PLH A + + ++L++
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 91 SN 92
+
Sbjct: 214 AG 215
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 59 QIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR--CSLENKMKKTPLHLAAQEGHVDM 116
++ + A++ G +PLH A ++ ++L ++ E +TPLHLA + +
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV 207
Query: 117 CKLLIKHQIDVNAQ 130
+LL+K D A+
Sbjct: 208 LELLLKAGADPTAR 221
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR--CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G +PLH A ++ ++L ++ E +TPLHLA + + +LL+K D
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKIL 88
A+ G +PL A + +A++L
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLL 244
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 32 ENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN-AQDIVGSSPLHYAAKKNKLDIAKILIE 90
EN TPLH+A +M +LL D+N + G +PLH A + + ++L++
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 91 SN 92
+
Sbjct: 214 AG 215
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 59 QIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR--CSLENKMKKTPLHLAAQEGHVDM 116
++ + A++ G +PLH A ++ ++L ++ E +TPLHLA + +
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV 207
Query: 117 CKLLIKHQIDVNAQ 130
+LL+K D A+
Sbjct: 208 LELLLKAGADPTAR 221
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 35/157 (22%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR----CSLENKMKKT-----------PLHLAAQEGY 48
G + LH A ++ + +L+E+ + + KKT PL LAA
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160
Query: 49 VDMCKLLIKHQI---DVNAQDIVGSSPLHYAAK--KNKLDIAK--------ILIESNRC- 94
+ + K L+++ D++A+D VG++ LH + N +D K ILI +
Sbjct: 161 LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSXYNEILILGAKLH 220
Query: 95 ------SLENKMKKTPLHLAAQEGHVDMCKLLIKHQI 125
+ N+ TPL LAA G + + +++ +I
Sbjct: 221 PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI 257
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 33.1 bits (74), Expect = 0.049, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 40 LHLA---AQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CS 95
LHLA A + + + +I++ ++A+ G++ LHYAA N+ D K+L++
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 96 LENKMKKTPLHLAAQEGHVDMCKLLIKHQ 124
N+ +T L +A ++ H + +LL + Q
Sbjct: 235 TVNEAGETALDIARKKHHKECEELLEQAQ 263
Score = 25.4 bits (54), Expect = 8.6, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
G++ LHYAA N+ D K+L++ N+ +T L +A ++ + + +LL + Q
Sbjct: 207 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ 263
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 39 PLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKIL 88
P+H AA+EG++D +L + ++ +D G P+ A + D+A+ L
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 39 PLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKIL 88
P+H AA+EG++D +L + ++ +D G P+ A + D+A+ L
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 39 PLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKIL 88
P+H AA+EG++D +L + ++ D G P+ A ++ DIA+ L
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 11 AAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
AA +L++ + + E N S N+ T LH A + LI +VN+ D G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 70 SSPLHYAAKKNKLDIAKILIE 90
+PLH AA N I L++
Sbjct: 88 WTPLHCAASCNDTVICMALVQ 108
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 34 KMKKTPLHL---AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE 90
+ + PL L AA G +++ + +K D + + G + LH A I LI
Sbjct: 16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLIT 75
Query: 91 SN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI 132
+ + + TPLH AA +C L++H + A +
Sbjct: 76 AGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 40 LHLA---AQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CS 95
LHLA A + + + +I++ ++A+ G++ LHYAA N+ D K+L++
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 96 LENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNA 129
N+ +T L +A ++ H + +LL + Q A
Sbjct: 254 TVNEAGETALDIARKKHHKECEELLEQAQAGTFA 287
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 28.9 bits (63), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 37 KTPLHLAAQEGYVDMCKL-----LIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES 91
+T LHLA + VD L L+++ +++ Q GS+ LHY + + K+L+
Sbjct: 170 ETALHLAVRS--VDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR- 226
Query: 92 NRCSLE--NKMKKTPLHLAAQEGH 113
+ S+E N+ +TPL +A + H
Sbjct: 227 GKASIEIANESGETPLDIAKRLKH 250
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 34/156 (21%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR------CS-LENKMKKT-------PLHLAAQEGYV 49
G S LH A +K L K+L+E+ C K + T PL LAA
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149
Query: 50 DMCKLLIK--HQ-IDVNAQDIVGSSPLHY-------AAKKNKLDI----------AKILI 89
D+ L++ HQ + A D +G++ LH + + + L I A++
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 209
Query: 90 ESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQI 125
+ N TPL LAA+EG +++ + +++ +
Sbjct: 210 TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 245
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 34/163 (20%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR------CS-LENKMKKT-------PLHLAAQEGYV 49
G S LH A +K L K+L+E+ C K + T PL LAA
Sbjct: 103 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 162
Query: 50 DMCKLLIK--HQ-IDVNAQDIVGSSPLHY-------AAKKNKLDI----------AKILI 89
D+ L++ HQ + A D +G++ LH + + + L I A++
Sbjct: 163 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 222
Query: 90 ESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI 132
+ N TPL LAA+EG +++ + +++ + Q +
Sbjct: 223 TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGPYQPL 265
>pdb|1B9L|A Chain A, 7,8-Dihydroneopterin Triphosphate Epimerase
pdb|1B9L|B Chain B, 7,8-Dihydroneopterin Triphosphate Epimerase
pdb|1B9L|C Chain C, 7,8-Dihydroneopterin Triphosphate Epimerase
pdb|1B9L|D Chain D, 7,8-Dihydroneopterin Triphosphate Epimerase
pdb|1B9L|E Chain E, 7,8-Dihydroneopterin Triphosphate Epimerase
pdb|1B9L|F Chain F, 7,8-Dihydroneopterin Triphosphate Epimerase
pdb|1B9L|G Chain G, 7,8-Dihydroneopterin Triphosphate Epimerase
pdb|1B9L|H Chain H, 7,8-Dihydroneopterin Triphosphate Epimerase
Length = 120
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 14/73 (19%)
Query: 63 NAQDIVGSSPLHYAAKKNKL--DIAKIL------------IESNRCSLENKMKKTPLHLA 108
N QDIV + +HY A K + DI L +E+NR SL K+ + L +A
Sbjct: 28 NRQDIVINVTIHYPADKARTSEDINDALNYRTVTKNIIQHVENNRFSLLEKLTQDVLDIA 87
Query: 109 AQEGHVDMCKLLI 121
+ V ++ I
Sbjct: 88 REHHWVTYAEVEI 100
>pdb|3FWB|C Chain C, Sac3:sus1:cdc31 Complex
pdb|3FWC|C Chain C, Sac3:sus1:cdc31 Complex
pdb|3FWC|D Chain D, Sac3:sus1:cdc31 Complex
pdb|3FWC|G Chain G, Sac3:sus1:cdc31 Complex
pdb|3FWC|H Chain H, Sac3:sus1:cdc31 Complex
pdb|3FWC|K Chain K, Sac3:sus1:cdc31 Complex
pdb|3FWC|L Chain L, Sac3:sus1:cdc31 Complex
pdb|3FWC|O Chain O, Sac3:sus1:cdc31 Complex
pdb|3FWC|P Chain P, Sac3:sus1:cdc31 Complex
pdb|3KIK|A Chain A, Sgf11:sus1 Complex
pdb|3KIK|B Chain B, Sgf11:sus1 Complex
pdb|3KIK|C Chain C, Sgf11:sus1 Complex
pdb|3KIK|D Chain D, Sgf11:sus1 Complex
pdb|3KJL|A Chain A, Sgf11:sus1 Complex
pdb|3KJL|B Chain B, Sgf11:sus1 Complex
pdb|3KJL|C Chain C, Sgf11:sus1 Complex
pdb|3KJL|D Chain D, Sgf11:sus1 Complex
pdb|3MHH|B Chain B, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
pdb|3MHS|B Chain B, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
BOUND Ubiquitin Aldehyde
pdb|3M99|C Chain C, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module
pdb|4FIP|B Chain B, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FIP|F Chain F, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FJC|B Chain B, Structure Of The Saga Ubp8SGF11(1-72,
Delta-Znf)SUS1SGF73 DUB Module
pdb|4FJC|F Chain F, Structure Of The Saga Ubp8SGF11(1-72,
Delta-Znf)SUS1SGF73 DUB Module
pdb|4FK5|B Chain B, Structure Of The Saga Ubp8(S144n)SGF11SUS1SGF73 DUB
MODULE
Length = 96
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 16 KLDIAKILIESNRCSL-ENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
K I + L+ES L N++K L QEG+VD K L K ++++N
Sbjct: 9 KSQIQQYLVESGNYELISNELKARLL----QEGWVDKVKDLTKSEMNIN 53
>pdb|4B7K|B Chain B, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-ser Peptide (20-mer)
Length = 20
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 113 HVDMCKLLIKHQIDVNAQD 131
H+++ KLL++H DV+AQD
Sbjct: 1 HLEVVKLLLEHGADVSAQD 19
>pdb|2XUM|S Chain S, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With
Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer)
Length = 20
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 113 HVDMCKLLIKHQIDVNAQD 131
H+++ KLL++H DV+AQD
Sbjct: 1 HLEVVKLLLEHGADVDAQD 19
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 20/107 (18%)
Query: 39 PLHLAAQEGYVDMCKLLIKH---QIDVNAQDIVGSSPLH--------------YAAKKNK 81
PL LAA + L ++ Q D+ QD G++ LH + K
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD 202
Query: 82 LDI---AKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQI 125
L + AK+ ++N +L N +PL +AA+ G + + + +I+ +I
Sbjct: 203 LLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREI 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,575,822
Number of Sequences: 62578
Number of extensions: 128542
Number of successful extensions: 1193
Number of sequences better than 100.0: 128
Number of HSP's better than 100.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 413
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)