RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6445
(134 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 109 bits (275), Expect = 4e-32
Identities = 49/120 (40%), Positives = 82/120 (68%), Gaps = 2/120 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AA L++ K+L+E+ + ++ +TPLHLAA+ G++++ KLL++ DV
Sbjct: 7 GRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV 66
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
NA+D G++PLH AA+ LD+ K+L++ + +K +TPLHLAA+ GH+++ KLL+
Sbjct: 67 NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 99.0 bits (247), Expect = 9e-28
Identities = 48/102 (47%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
++ +TPLHLAA G++++ KLL+++ DVNA+D G +PLH AAK L+I K+L+E
Sbjct: 4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63
Query: 93 RCS-LENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
+K TPLHLAA+ G++D+ KLL+KH DVNA+D +
Sbjct: 64 ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD 105
Score = 64.7 bits (158), Expect = 2e-14
Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
NA+D G +PLH AA L++ K+L+E+ + ++ +TPLHLAA+ GH+++ KLL+
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 122 KHQIDVNAQD 131
+ DVNA+D
Sbjct: 61 EKGADVNARD 70
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 85.0 bits (211), Expect = 7e-23
Identities = 37/93 (39%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Query: 40 LHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLEN 98
LHLAA+ G +++ KLL++ DVN D + LH AA+ L+I K+L+E + ++
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 99 KMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
K T LHLAA+ G++++ KLL++H D+N +D
Sbjct: 59 KDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 84.6 bits (210), Expect = 1e-22
Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 8 LHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDI 67
LH AAK L++ K+L+E + T LHLAA+ G +++ KLL++H DVNA+D
Sbjct: 1 LHLAAKNGNLELVKLLLEKG-ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDK 59
Query: 68 VGSSPLHYAAKKNKLDIAKILIE 90
G++ LH AA+ L+I K+L+E
Sbjct: 60 DGNTALHLAARNGNLEIVKLLLE 82
Score = 61.1 bits (149), Expect = 2e-13
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 5 SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
+ LH AA+ L+I K+L+E + ++K T LHLAA+ G +++ KLL++H D+N
Sbjct: 29 DTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADIN 88
Query: 64 AQD 66
+D
Sbjct: 89 LKD 91
Score = 61.1 bits (149), Expect = 2e-13
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 73 LHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI 132
LH AAK L++ K+L+E + T LHLAA+ G++++ KLL++H DVNA+D
Sbjct: 1 LHLAAKNGNLELVKLLLEKG-ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDK 59
Query: 133 E 133
+
Sbjct: 60 D 60
Score = 31.1 bits (71), Expect = 0.052
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE 25
G++ LH AA+ L+I K+L+E
Sbjct: 61 GNTALHLAARNGNLEIVKLLLE 82
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 68.1 bits (166), Expect = 2e-14
Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH A KLDI K+LI + N K +PLHLA G + +LLI H+ +
Sbjct: 102 GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL 161
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGHVDMCKLL 120
+ +D G +PL A K + I K+L++S N L A + +D+ +L
Sbjct: 162 DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLF 221
Query: 121 IKHQIDVN 128
IK D N
Sbjct: 222 IKRGADCN 229
Score = 56.2 bits (135), Expect = 3e-10
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK-KTPLHLAAQEGYVDMCKLLI---KHQ 59
G SP+ A K + K+L++ ++ LH A +EG V + L+ K
Sbjct: 35 GISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFA 94
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCK 118
DV +D G +PLH A KLDI K+LI + N K +PLHLA G + +
Sbjct: 95 DDVFYKD--GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152
Query: 119 LLIKHQIDVNAQD 131
LLI H+ ++ +D
Sbjct: 153 LLIDHKACLDIED 165
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 62.0 bits (151), Expect = 2e-12
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 24/149 (16%)
Query: 4 GSSPLHYAA--KKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVD--MCKLLIK 57
G +PL YA K N I + L+ N ++ N + LHL + +D + KLLI
Sbjct: 106 GITPLLYAISKKSNSYSIVEYLL-DNGANVNIKNSDGENLLHLYLESNKIDLKILKLLID 164
Query: 58 HQIDVNAQ----------------DIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKM 100
+D+NA+ D+ G +PLHYA N + K L++ +L NK
Sbjct: 165 KGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKY 224
Query: 101 KKTPLHLAAQEGHVDMCKLLIKHQIDVNA 129
TPLH+A + ++ KLL+ + +
Sbjct: 225 GDTPLHIAILNNNKEIFKLLLNNGPSIKT 253
Score = 61.6 bits (150), Expect = 4e-12
Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 15/140 (10%)
Query: 5 SSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYV-----DMCKLLIK 57
PL+ A + +D+ KIL++ N + + K TPLH + Y ++ KLL++
Sbjct: 36 VLPLYLAKEARNIDVVKILLD-NGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLE 94
Query: 58 HQIDVNAQDIVGSSPLHYAA--KKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGH 113
+ +VNA D G +PL YA K N I + L+ N ++ N + LHL +
Sbjct: 95 YGANVNAPDNNGITPLLYAISKKSNSYSIVEYLL-DNGANVNIKNSDGENLLHLYLESNK 153
Query: 114 VD--MCKLLIKHQIDVNAQD 131
+D + KLLI +D+NA++
Sbjct: 154 IDLKILKLLIDKGVDINAKN 173
Score = 50.8 bits (122), Expect = 2e-08
Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 27/152 (17%)
Query: 5 SSPLHYAA-----KKNKLDIAKILIESNRCSLENKMKK-TPLHLAAQE--GYVDMCKLLI 56
S+PLHY + + +I K+L+E TPL A + + + L+
Sbjct: 69 STPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLL 128
Query: 57 KHQIDVNAQDIVGSSPLHYAAK--KNKLDIAKILIESN-----RCSLE------------ 97
+ +VN ++ G + LH + K L I K+LI+ + +
Sbjct: 129 DNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIK 188
Query: 98 NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNA 129
+ TPLH A + + K L+ + N
Sbjct: 189 DVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL 220
Score = 49.3 bits (118), Expect = 8e-08
Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 21/141 (14%)
Query: 4 GSSPLHYAAK--KNKLDIAKILIESN-----RCSLE------------NKMKKTPLHLAA 44
G + LH + K L I K+LI+ + + + TPLH A
Sbjct: 141 GENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAV 200
Query: 45 QEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTP 104
+ K L+ + N + G +PLH A N +I K+L+ + + +T
Sbjct: 201 YNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS--IKTIIETL 258
Query: 105 LHLAAQEGHVDMCKLLIKHQI 125
L+ ++ + ++K I
Sbjct: 259 LYFKDKDLNTITKIKMLKKSI 279
Score = 43.1 bits (102), Expect = 1e-05
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAA-----KKNKLDIAKI 87
K PL+LA + +D+ K+L+ + D+N+ S+PLHY + + +I K+
Sbjct: 32 YKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKL 91
Query: 88 LIESNRCSLENKMKK-TPLHLAAQE--GHVDMCKLLIKHQIDVNA 129
L+E TPL A + + + L+ + +VN
Sbjct: 92 LLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNI 136
Score = 30.8 bits (70), Expect = 0.18
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 53 KLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQ 110
K +I + PL+ A + +D+ KIL++ N + + K TPLH +
Sbjct: 19 KYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLD-NGADINSSTKNNSTPLHYLSN 77
Query: 111 EGHV-----DMCKLLIKHQIDVNAQD 131
+ ++ KLL+++ +VNA D
Sbjct: 78 IKYNLTDVKEIVKLLLEYGANVNAPD 103
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 60.4 bits (146), Expect = 1e-11
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 15 NKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLH 74
K I IL ++++ KT LH A ++G ++ K+L ++ DVN +D G P+H
Sbjct: 103 EKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIH 162
Query: 75 YAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKH 123
A K N DI K+L+E ++++ ++PLH AA+ G KLLI H
Sbjct: 163 IAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDH 212
Score = 53.8 bits (129), Expect = 2e-09
Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Query: 8 LHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQD 66
LHYA KK L+ K+L E ++E+ P+H+A + + D+ KLL++ N +D
Sbjct: 128 LHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD 187
Query: 67 IVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK--TPLHLAAQEGHVDMCKLLIKHQ 124
G SPLH AA+ K+LI + + NK K TPLH A +LLI +
Sbjct: 188 NNGESPLHNAAEYGDYACIKLLI-DHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLINNA 245
Query: 125 IDVNAQDIE 133
+N QDI+
Sbjct: 246 -SINDQDID 253
Score = 52.3 bits (125), Expect = 7e-09
Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 3/130 (2%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G P+H A K N DI K+L+E ++++ ++PLH AA+ G KLLI H +
Sbjct: 157 GCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI 216
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQ-EGHVDMCKLLI 121
+ G +PLH A N+ ++LI + + ++ TPLH A +D+ +L+
Sbjct: 217 MNKCKNGFTPLHNAIIHNR-SAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILL 275
Query: 122 KHQIDVNAQD 131
H+ D++ +D
Sbjct: 276 YHKADISIKD 285
Score = 39.9 bits (93), Expect = 1e-04
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 24/119 (20%)
Query: 38 TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN----- 92
TPL A + G + +L IKH D+N + PL A K DI K+LI++
Sbjct: 37 TPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSI 96
Query: 93 -------------------RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI 132
++++ KT LH A ++G ++ K+L ++ DVN +D
Sbjct: 97 LPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD 155
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 54.2 bits (131), Expect = 4e-11
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 38 TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILI 89
T LH AA G +++ K L++ +D+N D G++ LH AA+ L++ K+L+
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 46.8 bits (112), Expect = 3e-08
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 69 GSSPLHYAAKKNKLDIAKILIES-NRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
G + LH AA +L++ K L+E + ++ T LH+AA+ G++++ KLL+
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 43.8 bits (104), Expect = 3e-07
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES-NRCSLENKMKKTPLHLAAQEGYVDMCKLLI 56
G + LH AA +L++ K L+E + ++ T LH+AA+ G +++ KLL+
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 37.2 bits (87), Expect = 1e-04
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 103 TPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
T LH AA G +++ K L++ +D+N D +
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDED 33
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 57.1 bits (137), Expect = 7e-11
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 38 TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKL-----DIAKILIESN 92
PLH AA +G + KLL+ DVNA+D G +PLH AA ++AK+L+E+
Sbjct: 75 LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAG 134
Query: 93 RCS----LENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
L ++ TPLH AA G D+ +LL++ D N+++
Sbjct: 135 ADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSY 179
Score = 51.0 bits (121), Expect = 2e-08
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 2 QVGSSPLHYAAKKNKL-----DIAKILIESNRCS----LENKMKKTPLHLAAQEGYVDMC 52
G +PLH AA ++AK+L+E+ L ++ TPLH AA G D+
Sbjct: 104 ADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIV 163
Query: 53 KLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
+LL++ D N+++ G + L AAK ++++ K+L++
Sbjct: 164 ELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203
Score = 47.9 bits (113), Expect = 1e-07
Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 10/136 (7%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAA-----QEGYVDMCKLLIK 57
G PLH AA K I K+L+ S + ++ TPLHLAA EG +++ KLL++
Sbjct: 73 GRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLE 132
Query: 58 H---QIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGH 113
N +D G++PLH+AA DI ++L+E + N T L AA+ G
Sbjct: 133 AGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGR 192
Query: 114 VDMCKLLIKHQIDVNA 129
+++ KLL+ + ++
Sbjct: 193 IELVKLLLDKGLHLSL 208
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 56.8 bits (137), Expect = 2e-10
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 32/125 (25%)
Query: 37 KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPL-------HY-------------- 75
+TPLH+AA +GY D +L+KH +V+ +D G++ L H+
Sbjct: 559 RTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISD 618
Query: 76 ----------AAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQ 124
AAK+N L K L++ E+ T L +A E HVDM +LLI +
Sbjct: 619 PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNG 678
Query: 125 IDVNA 129
DV+
Sbjct: 679 ADVDK 683
Score = 41.0 bits (96), Expect = 7e-05
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 45 QEGYVDMCKLLIKHQI---DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK 101
QE V + K ++H D+N D++G + + ++ + N LE +K
Sbjct: 487 QEDNVVILKNFLQHHKELHDLNVGDLLGDNGGEHDDPNMASNLLTVASTGNAALLEELLK 546
Query: 102 ------------KTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
+TPLH+AA +G+ D +L+KH +V+ +D
Sbjct: 547 AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDAN 590
Score = 36.8 bits (85), Expect = 0.002
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 40 LHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILI----ESNRCS 95
L AA+ + K L+K ++V+++D G++ L A ++ +D+ ++LI + ++ +
Sbjct: 626 LCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKAN 685
Query: 96 LENKMKKTPLHLAAQE---GH 113
++ T L Q+ GH
Sbjct: 686 TDDDFSPTELRELLQKRELGH 706
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 56.0 bits (135), Expect = 3e-10
Identities = 33/137 (24%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 1 RQVGSSPLHYAAKKNKLDIAK-ILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
R G++ LHYA + + + +L ++ +K +PLH A + + +L+++
Sbjct: 165 RHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENG 224
Query: 60 IDVNAQDIVGSSPLHYAAKKNK-LDIAKILIESNRC--SLENKMKKTPLHLAAQEGHVDM 116
+A+D G++PLH + K DI K+L+E + + T LH + +
Sbjct: 225 ASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSE--RK 282
Query: 117 CKLLIKHQIDVNAQDIE 133
KLL+++ D+N+ +
Sbjct: 283 LKLLLEYGADINSLNSY 299
Score = 36.4 bits (84), Expect = 0.002
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 4 GSSPLHYAAKKNK-LDIAKILIESNRC--SLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
G++PLH + K DI K+L+E + + T LH + + KLL+++
Sbjct: 234 GNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSE--RKLKLLLEYGA 291
Query: 61 DVNAQDIVGSSPLHYAAKKNK-LDIAKILIESNRCSLENKMK 101
D+N+ + +PL A K+ ++I +ILI SN C L+
Sbjct: 292 DINSLNSYKLTPLSSAVKQYLCINIGRILI-SNICLLKRIKP 332
Score = 34.9 bits (80), Expect = 0.007
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 39 PLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK-NKLDIAKILIESNRCSLE 97
PLH A + +D+ K L+ +VN D +PLH K+ NKL + +++ N+CS+
Sbjct: 40 PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVF 99
Query: 98 NKMKK 102
+
Sbjct: 100 YTLVA 104
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 53.9 bits (130), Expect = 2e-09
Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 32/160 (20%)
Query: 1 RQVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
++G S L AA +N+ L+ + C + T LH + YVD + ++ H +
Sbjct: 49 DRLGRSALFVAAIENENLELTELLLNLSCRGA--VGDTLLHAIS-LEYVDAVEAILLHLL 105
Query: 61 D----------VNAQDI----VGSSPLHYAAKKNKLDIAKILIESN-----RCS----LE 97
N Q G + LH AA + +I K+L+E R ++
Sbjct: 106 AAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVK 165
Query: 98 NKMK------KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
++ ++PL+ AA G + LL + D+ D
Sbjct: 166 SQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD 205
Score = 42.4 bits (100), Expect = 2e-05
Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 32/152 (21%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESN-----RCS----LENKMK------KTPLHLAAQE 46
G + LH AA + +I K+L+E R ++++ ++PL+ AA
Sbjct: 126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACL 185
Query: 47 GYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKL------------DIAKILIESNRC 94
G + LL + D+ D +G++ LH +N+ + A L++ R
Sbjct: 186 GSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRD 245
Query: 95 SLE-----NKMKKTPLHLAAQEGHVDMCKLLI 121
S E N TPL LAA+EG + + +L +
Sbjct: 246 SKELEVILNHQGLTPLKLAAKEGRIVLFRLKL 277
Score = 30.4 bits (69), Expect = 0.24
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKL 119
+++N D +G S L AA +N+ L+ + C + T LH + +VD +
Sbjct: 43 LNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGA--VGDTLLHAIS-LEYVDAVEA 99
Query: 120 LIKHQIDV 127
++ H +
Sbjct: 100 ILLHLLAA 107
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 46.4 bits (111), Expect = 3e-08
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 103 TPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
TPLHLAA+ GH+++ KLL++ DVNA+D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 44.5 bits (106), Expect = 1e-07
Identities = 16/29 (55%), Positives = 24/29 (82%)
Query: 38 TPLHLAAQEGYVDMCKLLIKHQIDVNAQD 66
TPLHLAA+ G++++ KLL++ DVNA+D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 32.1 bits (74), Expect = 0.006
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE 25
G++PLH AA+ L++ K+L+E
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLE 23
Score = 32.1 bits (74), Expect = 0.006
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 69 GSSPLHYAAKKNKLDIAKILIE 90
G++PLH AA+ L++ K+L+E
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLE 23
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 50.8 bits (121), Expect = 3e-08
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 5/130 (3%)
Query: 5 SSPLHYAAKKNKLD--IAKILIESNRCSLENKMKKTPLHLAAQEGY-VDMCKLLIKHQID 61
++PLH+A++ L + K+L + +N +TPL+L A+ GY + + LI D
Sbjct: 274 NTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD 333
Query: 62 VNAQDIVGSSPLHYAAK--KNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKL 119
VNA D + +PLH A+ +NK + +L + + KTP+H AA +V +
Sbjct: 334 VNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINT 393
Query: 120 LIKHQIDVNA 129
L+ + D+ A
Sbjct: 394 LLDYGADIEA 403
Score = 44.3 bits (104), Expect = 4e-06
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 32/154 (20%)
Query: 13 KKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSS 71
++++L IA++L+E + ++ TP+H AA+ G M LL+ + DVN + S
Sbjct: 154 QQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLS 213
Query: 72 PLHYAAKKNKLDIAKILIES------NRCSLENKM------------------------K 101
L A +D K +I++ N SL + K
Sbjct: 214 VLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCK 273
Query: 102 KTPLHLAAQEGHVD-MCKLLIKHQIDVNAQDIEA 134
TPLH A+Q + + L++ DVNA++I+
Sbjct: 274 NTPLHHASQAPSLSRLVPKLLERGADVNAKNIKG 307
Score = 41.6 bits (97), Expect = 4e-05
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 7/91 (7%)
Query: 6 SPLHYAAKKNKLDIAKILIESNRCSLENKMKK--TPLHLA--AQEGYVDMCKLLIKHQID 61
+P+HYAA +N + I L++ +E +K T LH A Y+ + K LI +
Sbjct: 377 TPIHYAAVRNNVVIINTLLDYG-ADIEALSQKIGTALHFALCGTNPYMSV-KTLIDRGAN 434
Query: 62 VNAQDIVGSSPLHYAAKKN-KLDIAKILIES 91
VN+++ S+PLHYA KKN KLD+ ++L+++
Sbjct: 435 VNSKNKDLSTPLHYACKKNCKLDVIEMLLDN 465
Score = 41.2 bits (96), Expect = 5e-05
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 36 KKTPLHLAAQEGYVD-MCKLLIKHQIDVNAQDIVGSSPLHYAAKK--NKLDIAKILIESN 92
K TPLH A+Q + + L++ DVNA++I G +PL+ AK + +I +++
Sbjct: 273 KNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGA 332
Query: 93 RCSLENKMKKTPLHLAAQ-EGHVDMCKLLIKHQIDVNAQD 131
+ +++ TPLH A+ + + D+ L++ +VNA+D
Sbjct: 333 DVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARD 372
Score = 40.8 bits (95), Expect = 7e-05
Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 39/169 (23%)
Query: 4 GSSPLHYAAKK--NKLDIAKILIESNRCSLENKMKKTPLHLAAQ-EGYVDMCKLLIKHQI 60
G +PL+ AK + +I +++ + +++ TPLH A+ + D+ L++
Sbjct: 307 GETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGA 366
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIE------------------------------ 90
+VNA+D +P+HYAA +N + I L++
Sbjct: 367 NVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVK 426
Query: 91 -----SNRCSLENKMKKTPLHLAAQEG-HVDMCKLLIKHQIDVNAQDIE 133
+ +NK TPLH A ++ +D+ ++L+ + DVNA +I+
Sbjct: 427 TLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQ 475
Score = 27.3 bits (60), Expect = 2.8
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 32 ENKMKKTPLHLAAQEG-YVDMCKLLIKHQIDVNAQDIVGSSPL 73
+NK TPLH A ++ +D+ ++L+ + DVNA +I PL
Sbjct: 438 KNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPL 480
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 48.7 bits (116), Expect = 4e-08
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 12/131 (9%)
Query: 4 GSSPLHYAAKK----NKLDIAKILIESNR--CSLENKMKKTPLHLAAQEGYVD---MCKL 54
G + LHY + + L + + NR N+ K +H+ + D KL
Sbjct: 17 GENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKL 76
Query: 55 LIKHQIDVNAQD-IVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQE 111
L++ D+N ++ + G++PLH A ++A L ++E N KTP ++A +
Sbjct: 77 LMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACER 136
Query: 112 GHVDMCKLLIK 122
M +L
Sbjct: 137 HDAKMMNILRA 147
Score = 27.5 bits (61), Expect = 1.6
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 66 DIVGSSPLHYAAKK----NKLDIAKILIESNR--CSLENKMKKTPLHLAAQEGHVD---M 116
DI G + LHY + + L + + NR N+ K +H+ + D
Sbjct: 14 DIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEK 73
Query: 117 CKLLIKHQIDVNAQD 131
KLL++ D+N ++
Sbjct: 74 LKLLMEWGADINGKE 88
Score = 26.8 bits (59), Expect = 2.8
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 32 ENKMKKTPLHLAAQEGYVDMCKLLIKH-QIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE 90
E TPLH+A ++ L +++ + +P + A +++ + IL
Sbjct: 88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRA 147
Query: 91 SN-RC 94
+C
Sbjct: 148 KGAQC 152
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 48.5 bits (116), Expect = 1e-07
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 20/144 (13%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLEN--------KMKKTPLHLAAQEGYV-DMCKL 54
G +PLH + + I+ R LE + TPLHL D+ KL
Sbjct: 47 GKTPLHLYLHYSSEKVKDIV----RLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKL 102
Query: 55 LIKHQIDVNAQDIVGSSPLH-YAAKKN-KLDIAKILIE--SNRCSLENKMKKTPLH--LA 108
LIK DVNA+D VG +PLH Y + N + ++L+ ++ +L + TPL L
Sbjct: 103 LIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNAL-DLYGMTPLAVLLK 161
Query: 109 AQEGHVDMCKLLIKHQIDVNAQDI 132
++ +V++ +LLI DV A D
Sbjct: 162 SRNANVELLRLLIDAGADVYAVDD 185
Score = 40.0 bits (94), Expect = 1e-04
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 48 YVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLEN--------K 99
V+ + L+ DVN + G +PLH + + I+ R LE +
Sbjct: 26 TVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIV----RLLLEAGADVNAPER 81
Query: 100 MKKTPLHLAAQEGHV-DMCKLLIKHQIDVNAQD 131
TPLHL D+ KLLIK DVNA+D
Sbjct: 82 CGFTPLHLYLYNATTLDVIKLLIKAGADVNAKD 114
Score = 35.4 bits (82), Expect = 0.005
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 14/141 (9%)
Query: 3 VGSSPLH-YAAKKN-KLDIAKILIE--SNRCSLENKMKKTPLH--LAAQEGYVDMCKLLI 56
VG +PLH Y + N + ++L+ ++ +L + TPL L ++ V++ +LLI
Sbjct: 116 VGRTPLHVYLSGFNINPKVIRLLLRKGADVNAL-DLYGMTPLAVLLKSRNANVELLRLLI 174
Query: 57 KHQIDVNAQDIVGSSPLHYAA---KKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEG- 112
DV A D S LH+ K + +++ + + + TPLH A
Sbjct: 175 DAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSS 234
Query: 113 --HVDMCKLLIKHQIDVNAQD 131
+ LLI I +NA++
Sbjct: 235 CKRSLVLPLLIAG-ISINARN 254
Score = 35.4 bits (82), Expect = 0.005
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 6 SPLHYAA---KKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKL--LIKHQI 60
S LH+ K + +++ + + + TPLH A + L+ I
Sbjct: 189 SLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGI 248
Query: 61 DVNAQDIVGSSPLHYAAKKNK 81
+NA++ G +PLHYAA N
Sbjct: 249 SINARNRYGQTPLHYAAVFNN 269
Score = 33.5 bits (77), Expect = 0.019
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 53 KLLIKHQIDVNAQDIVGSSPLHYAAKKN---KLDIAKILIESNRCSLENKMKKTPLHLAA 109
+ LI+ D A D++G++PLH A + + + +LI + N+ +TPLH AA
Sbjct: 206 RELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAA 265
Query: 110 QEGHVDMCKLLIKHQIDVNA 129
+ C+ LI D+NA
Sbjct: 266 VFNNPRACRRLIALGADINA 285
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 42.3 bits (100), Expect = 1e-06
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 25 ESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYA 76
+ + TPLHLAA+ G +++ + L+K +D+N +D G + L A
Sbjct: 5 GPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 42.3 bits (100), Expect = 2e-06
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 54 LLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLA 108
LL ID+NA D G++PLH AAK L++ + L++ +L + T L LA
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 35.8 bits (83), Expect = 5e-04
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 90 ESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+ + TPLHLAA+ G +++ + L+K +D+N +D
Sbjct: 5 GPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRD 46
Score = 33.5 bits (77), Expect = 0.003
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLA 43
G++PLH AAK L++ + L++ +L + T L LA
Sbjct: 16 GNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 44.5 bits (105), Expect = 4e-06
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 41 HLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENK 99
LAA V ++L+ D N +D G +PLH A + + ++L+E +L +K
Sbjct: 88 QLAASGDAVGA-RILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK 146
Query: 100 MKKTPLHLAAQEGHVDMCKLLIKHQI 125
KTPL LA + G ++ +LL +H
Sbjct: 147 DGKTPLELAEENGFREVVQLLSRHSQ 172
Score = 41.8 bits (98), Expect = 3e-05
Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Query: 20 AKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAK 78
A+IL+ + + +TPLH+A G+V + ++L++ D D G +PL A +
Sbjct: 98 ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157
Query: 79 KNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKH 123
++ ++L ++C E P + ++ + H
Sbjct: 158 NGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDSPISSHH 202
Score = 38.3 bits (89), Expect = 5e-04
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
G +PLH A + + ++L+E +L +K KTPL LA + G+ ++ +LL +H
Sbjct: 115 GRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQ 172
Score = 30.3 bits (68), Expect = 0.32
Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 11/114 (9%)
Query: 18 DIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAA 77
+IA+I TP H E +D ++ H + V AA
Sbjct: 43 EIARIDTHLEALEATENKDATPDHNLTTEEVIDP---VVAHMLTVEL--------CQLAA 91
Query: 78 KKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+ + +L + + +TPLH+A GHV + ++L++ D D
Sbjct: 92 SGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD 145
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 37.2 bits (87), Expect = 8e-05
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNA 129
+TPLHLAA+ G++++ KLL+ D+NA
Sbjct: 3 RTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 35.3 bits (82), Expect = 4e-04
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 37 KTPLHLAAQEGYVDMCKLLIKHQIDVNA 64
+TPLHLAA+ G +++ KLL+ D+NA
Sbjct: 3 RTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 30.2 bits (69), Expect = 0.036
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN 27
G +PLH AA+ L++ K+L++
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKG 25
Score = 30.2 bits (69), Expect = 0.036
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 69 GSSPLHYAAKKNKLDIAKILIESN 92
G +PLH AA+ L++ K+L++
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKG 25
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 36.1 bits (84), Expect = 2e-04
Identities = 15/27 (55%), Positives = 23/27 (85%)
Query: 103 TPLHLAAQEGHVDMCKLLIKHQIDVNA 129
TPLHLAA+ G++++ KLL++H D+NA
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGADINA 30
Score = 34.2 bits (79), Expect = 0.001
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 38 TPLHLAAQEGYVDMCKLLIKHQIDVNA 64
TPLHLAA+ G +++ KLL++H D+NA
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGADINA 30
Score = 28.0 bits (63), Expect = 0.21
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE 25
G++PLH AA+ L++ K+L+E
Sbjct: 2 GNTPLHLAARNGNLELVKLLLE 23
Score = 28.0 bits (63), Expect = 0.21
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 69 GSSPLHYAAKKNKLDIAKILIE 90
G++PLH AA+ L++ K+L+E
Sbjct: 2 GNTPLHLAARNGNLELVKLLLE 23
>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional.
Length = 300
Score = 35.7 bits (82), Expect = 0.004
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 23/124 (18%)
Query: 13 KKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQ----DIV 68
KKNK+ IA IL S + Y D+ ++K D A +
Sbjct: 27 KKNKICIANILYSSIKFH-----------------YTDIIDAILKLGADPEAPFPLSENS 69
Query: 69 GSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID 126
++PL YA + D AK+LI ++ + K TPL+++ G + ++L+ + D
Sbjct: 70 KTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGAD 129
Query: 127 VNAQ 130
+N Q
Sbjct: 130 INIQ 133
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 34.6 bits (79), Expect = 0.008
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Query: 7 PLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA 64
PLH AA I KIL+ S + ++K T L+ A G + KL +K +
Sbjct: 64 PLHQAATLEDTKIVKILLFSGMDDSQFDDK-GNTALYYAVDSGNMQTVKLFVKKNWRLMF 122
Query: 65 QDIVG-SSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKH 123
G + ++A N + I + + + + + +H+ + GHVDM LL+ +
Sbjct: 123 YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 182
Query: 124 QIDVNAQD 131
N +
Sbjct: 183 MTSTNTNN 190
Score = 33.5 bits (76), Expect = 0.018
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKT-PLHLAAQEGYVDMCKLLIKHQIDV 62
G S L+YA N + + L+ N +L+N ++ PLH AA + K+L+ +D
Sbjct: 30 GHSALYYAIADNNVRLVCTLL--NAGALKNLLENEFPLHQAATLEDTKIVKILLFSGMDD 87
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
+ D G++ L+YA + K+ ++ N
Sbjct: 88 SQFDDKGNTALYYAVDSGNMQTVKLFVKKN 117
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 34.4 bits (79), Expect = 0.010
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 14 KNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLL---IKHQIDVNAQDIVG 69
K+ LDI KILIE+ + +N +TPL+ GY++ ++L I++ D D G
Sbjct: 86 KHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDG 145
Query: 70 SSPLHYAAKKN---KLDIAKILIES--NRCSLENKMKKTPLHLAAQEG----HVDMCKLL 120
+ L + N ++I K+L+E + + NK K LH + D+ KL
Sbjct: 146 FTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLF 205
Query: 121 IKHQIDVNAQD 131
+ + +N ++
Sbjct: 206 VDNGFIINKEN 216
Score = 32.9 bits (75), Expect = 0.031
Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 15/127 (11%)
Query: 16 KLDIAKILIE--SNRCSLENKMKKTPL-----HLAAQEGYVDMCKLLIKHQIDVNAQDIV 68
DI K+ I +N L+N+ TPL ++ + +D+ K+LI++ D+N ++
Sbjct: 50 STDIVKLFINLGANVNGLDNEYS-TPLCTILSNIKDYKHMLDIVKILIENGADINKKNSD 108
Query: 69 GSSPLH---YAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGH---VDMCKLLI 121
G +PL+ N L+I +IE+ +L +K T L + Q H +++ KLL+
Sbjct: 109 GETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLL 168
Query: 122 KHQIDVN 128
+ +D+N
Sbjct: 169 EKGVDIN 175
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 29.7 bits (67), Expect = 0.45
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 16 KLDIAKILIESNRCSLENK-MKKTPLHLAAQEGYVD------MCKLLIKHQIDVNAQDIV 68
K+ I K+LI+ N + K +TPL + + + KLL+K D+N +
Sbjct: 49 KIKIVKLLID-NGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFN 107
Query: 69 GSSPLH---YAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGHV--DMCKLLI 121
G SP+ Y + N D+ + L+ N ++N LH+ + V D+ K+L+
Sbjct: 108 GVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILL 167
Query: 122 KHQIDV 127
+++
Sbjct: 168 SFGVNL 173
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 29.0 bits (65), Expect = 0.61
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 12/104 (11%)
Query: 6 SPLHYAAKKNK--LDIAKILIESNRCSLENKMKK---TPLH--LAAQEGY-VDMCKLLIK 57
+P+ +K+K ++I K LIE N + K + + LH L+ + ++ K+LI
Sbjct: 53 TPIFSCLEKDKVNVEILKFLIE-NGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILID 111
Query: 58 HQIDVNAQDIVGSSPLH-YAAKKN-KLDIAKILIESNRCSLENK 99
+ +D G + LH Y N ++++ K+LI+S S NK
Sbjct: 112 SGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSG-VSFLNK 154
Score = 26.7 bits (59), Expect = 4.0
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 70 SSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLH--LAAQEGHVDMCKLLIKHQID 126
+PL Y +K+ ++ K I+ N C N + +TP+ L + +V++ K LI++ D
Sbjct: 22 CNPLFYYVEKDDIEGVKKWIKFVNDC---NDLYETPIFSCLEKDKVNVEILKFLIENGAD 78
Query: 127 VN 128
VN
Sbjct: 79 VN 80
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 28.5 bits (63), Expect = 1.1
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 4 GSSPLHYAAKKNKLDIAKILI----ESNRCSLENKMKKTPLHL--AAQEGYVDMCKLLIK 57
G+ PLH A+K N I +L+ + N C +K KTPL+ + ++ LL++
Sbjct: 72 GNYPLHIASKINNNRIVAMLLTHGADPNAC---DKQHKTPLYYLSGTDDEVIERINLLVQ 128
Query: 58 HQIDV-NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLH 106
+ + N+ D G PL ++ KI+ + +K K +H
Sbjct: 129 YGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIH 178
Score = 28.1 bits (62), Expect = 1.4
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 41 HLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN--KLDIAKILIESNRCSLEN 98
HL + ++K I + D G++PLH K +DI +L+ S + +N
Sbjct: 180 HLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQN 239
Query: 99 KMKKTPLHL 107
K +PL L
Sbjct: 240 KFGDSPLTL 248
Score = 26.6 bits (58), Expect = 4.8
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILI----ESNRCSLENKMKKTPL-HLAAQEGHV-DM 116
N D G+ PLH A+K N I +L+ + N C +K KTPL +L+ + V +
Sbjct: 66 NETDDDGNYPLHIASKINNNRIVAMLLTHGADPNAC---DKQHKTPLYYLSGTDDEVIER 122
Query: 117 CKLLIKHQIDVN 128
LL+++ +N
Sbjct: 123 INLLVQYGAKIN 134
Score = 26.2 bits (57), Expect = 7.4
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 4 GSSPLHYAAKKN--KLDIAKILIESNRCSLENKMKKTPLHL 42
G++PLH K +DI +L+ S + +NK +PL L
Sbjct: 208 GNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTL 248
>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional.
Length = 166
Score = 27.9 bits (62), Expect = 1.3
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 53 KLLIKHQIDVNAQDI-VGSSPLHYAAKKNKLDIAKILIESNRCSL--ENKMKKTPLHLAA 109
+LL+ D+NA+++ G++ LH AA ++A+ L +L N +T H+A
Sbjct: 77 ELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAY 136
Query: 110 QEGHVDMCKLLIKH 123
+ M ++L +
Sbjct: 137 KMRDRRMMEILRAN 150
>gnl|CDD|236233 PRK08311, PRK08311, putative RNA polymerase sigma factor SigI;
Reviewed.
Length = 237
Score = 27.9 bits (63), Expect = 1.4
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 66 DIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKT 103
D+V SP H ++N + IAK + E+ L K+K+
Sbjct: 150 DLVKESPKHRDTRENAIKIAKTIAENE--ELLEKLKRK 185
>gnl|CDD|183906 PRK13234, nifH, nitrogenase reductase; Reviewed.
Length = 295
Score = 27.9 bits (62), Expect = 1.5
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 86 KILI-------ESNRCSLENKMKKTPLHLAAQEGHVD 115
KILI +S R L K + T L LAA+ G V+
Sbjct: 34 KILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVE 70
Score = 27.5 bits (61), Expect = 1.9
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 21 KILI-------ESNRCSLENKMKKTPLHLAAQEGYVD 50
KILI +S R L K + T L LAA+ G V+
Sbjct: 34 KILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVE 70
>gnl|CDD|240365 PTZ00333, PTZ00333, triosephosphate isomerase; Provisional.
Length = 255
Score = 28.0 bits (63), Expect = 1.5
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 50 DMCKLLIKHQIDVNAQDIVGSSP-LHYAAKKNKLDIAKILIESNRCSLEN 98
++ K + D N D+V + P LH + KL I S SL
Sbjct: 23 ELIDSFNKLKFDPNNVDVVVAPPSLHIPLVQEKLKNKNFKISSQNVSLTG 72
>gnl|CDD|237312 PRK13236, PRK13236, nitrogenase reductase; Reviewed.
Length = 296
Score = 26.1 bits (57), Expect = 6.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 90 ESNRCSLENKMKKTPLHLAAQEGHVDMCKL 119
+S R L +K + T LHLAA+ G V+ +L
Sbjct: 47 DSTRLMLHSKAQTTVLHLAAERGAVEDLEL 76
Score = 26.1 bits (57), Expect = 6.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 25 ESNRCSLENKMKKTPLHLAAQEGYVDMCKL 54
+S R L +K + T LHLAA+ G V+ +L
Sbjct: 47 DSTRLMLHSKAQTTVLHLAAERGAVEDLEL 76
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 26.1 bits (57), Expect = 7.4
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIES-NRCSLENKMKKTPLHLAAQEG-HVDMCK 118
D+N D G + LH A + NK + +L+ES + ++ + T + +A E ++++ K
Sbjct: 444 DINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLK 503
Query: 119 LLIKHQ 124
+L+ H+
Sbjct: 504 MLLCHK 509
>gnl|CDD|212538 cd11592, Agmatinase_PAH, Agmatinase-like family includes
proclavaminic acid amidinohydrolase. This agmatinase
subfamily contains bacterial and fungal/metazoan
enzymes, including proclavaminic acid amidinohydrolase
(PAH, EC 3.5.3.22) and Pseudomonas aeruginosa
guanidinobutyrase (GbuA) and guanidinopropionase (GpuA).
PAH hydrolyzes amidinoproclavaminate to yield
proclavaminate and urea in clavulanic acid biosynthesis.
Clavulanic acid is an effective inhibitor of
beta-lactamases and is used in combination with
amoxicillin to prevent the beta-lactam rings of the
antibiotic from hydrolysis and, thus keeping the
antibiotic biologically active. GbuA hydrolyzes
4-guanidinobutyrate (4-GB) into 4-aminobutyrate and urea
while GpuA hydrolyzes 3-guanidinopropionate (3-GP) into
beta-alanine and urea. Mutation studies show that
significant variations in two active site loops in these
two enzymes may be important for substrate specificity.
This subfamily belongs to the ureohydrolase superfamily,
which includes arginase, agmatinase, proclavaminate
amidinohydrolase, and formiminoglutamase.
Length = 289
Score = 25.9 bits (58), Expect = 8.0
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 38 TPLHLAAQEGYVD 50
TP A +EG +D
Sbjct: 149 TPFRRAVEEGLLD 161
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.369
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,398,660
Number of extensions: 541635
Number of successful extensions: 605
Number of sequences better than 10.0: 1
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 118
Length of query: 134
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 48
Effective length of database: 7,123,158
Effective search space: 341911584
Effective search space used: 341911584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)