RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6445
(134 letters)
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 136 bits (345), Expect = 2e-41
Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 7/132 (5%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
G L + N I N + L ++ EG D+ + +I D +
Sbjct: 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPS 64
Query: 64 AQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMCKL 119
+ G + LH A +I K L++ N + TPLH AA +V +CK
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA---DSDGWTPLHCAASCNNVQVCKF 121
Query: 120 LIKHQIDVNAQD 131
L++ V A
Sbjct: 122 LVESGAAVFAMT 133
Score = 128 bits (324), Expect = 3e-38
Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 7/134 (5%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
+ L ++ + + D+ + +I T LH A G+ ++ K L++ ++
Sbjct: 37 PLALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN 95
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMC 117
VNA D G +PLH AA N + + K L+ES + + +EG+
Sbjct: 96 VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 155
Query: 118 KLLIKHQIDVNAQD 131
+ L Q + +
Sbjct: 156 QFLYGVQEKMGIMN 169
Score = 100 bits (252), Expect = 1e-27
Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 14/134 (10%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
G + LH A +I K L++ N + TPLH AA V +CK L++
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAA---DSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 60 IDVNAQ---DIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVD 115
V A D+ ++ ++ ++ L + + NK L + +
Sbjct: 127 AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE 186
Query: 116 MCKLLIKHQIDVNA 129
L +K +
Sbjct: 187 ---LPMKEGDCMTI 197
Score = 82.7 bits (205), Expect = 1e-20
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 4/114 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
G +PLH AA N + + K L+ES + + +EGY + L Q
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGH 113
+ + L +N ++ + + A
Sbjct: 163 EKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDK 216
Score = 75.3 bits (186), Expect = 8e-18
Identities = 13/68 (19%), Positives = 23/68 (33%)
Query: 66 DIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQI 125
+I G L + N I N + L ++ EG D+ + +I
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVD 61
Query: 126 DVNAQDIE 133
D + + E
Sbjct: 62 DPSLPNDE 69
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 134 bits (340), Expect = 2e-41
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR--CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
L AAK ++ K L C + TPLH AA V + + L++H D
Sbjct: 8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 67
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
V+A+D G PLH A ++A++L+ + + + K TPLH AA +G ++CKL
Sbjct: 68 VHAKDKGGLVPLHNACSYGHYEVAELLV-KHGAVVNVADLWKFTPLHEAAAKGKYEICKL 126
Query: 120 LIKHQIDVNAQD 131
L++H D ++
Sbjct: 127 LLQHGADPTKKN 138
Score = 121 bits (306), Expect = 2e-36
Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
S+PLH+AA N++ + + L+ + + +K PLH A G+ ++ +LL+KH
Sbjct: 42 QSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 100
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
VN D+ +PLH AA K K +I K+L+ + N+ TPL L +G D+ L
Sbjct: 101 VNVADLWKFTPLHEAAAKGKYEICKLLL-QHGADPTKKNRDGNTPLDLVK-DGDTDIQDL 158
Query: 120 LIKH 123
L
Sbjct: 159 LRGD 162
Score = 104 bits (263), Expect = 8e-30
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLI-KHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES 91
N L AA+ G V+ K L ++ + S+PLH+AA N++ + + L+
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-Q 63
Query: 92 NRCSLE--NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+ + +K PLH A GH ++ +LL+KH VN D
Sbjct: 64 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 105
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 136 bits (344), Expect = 4e-41
Identities = 48/132 (36%), Positives = 72/132 (54%), Gaps = 5/132 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
G +PLH A + + +ILI + L+ +M TPL LAA+ M + LI D
Sbjct: 90 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 149
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
VNA D +G S LH+AA N +D A +L+ N + + N ++TPL LAA+EG + K+
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREETPLFLAAREGSYETAKV 208
Query: 120 LIKHQIDVNAQD 131
L+ H + + D
Sbjct: 209 LLDHFANRDITD 220
Score = 126 bits (319), Expect = 2e-37
Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
G++PL AA+ + + LI ++ + K+ LH AA VD +L+K+ +
Sbjct: 124 GTTPLILAARLAVEGMLEDLI-NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 182
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
+ Q+ +PL AA++ + AK+L+ + + + + M + P +A + H D+ +L
Sbjct: 183 KDMQNNREETPLFLAAREGSYETAKVLL-DHFANRDITDHMDRLPRDIAQERMHHDIVRL 241
Query: 120 LIKHQIDVNAQ 130
L +
Sbjct: 242 LDLEHHHHHHH 252
Score = 123 bits (312), Expect = 3e-36
Identities = 45/146 (30%), Positives = 66/146 (45%), Gaps = 19/146 (13%)
Query: 4 GSSPLHYAA-------------KKNKLDIAKILIESNRCSLENKMKK---TPLHLAAQEG 47
G +PL A+ +++ + I SL N+ + T LHLAA+
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFI-YQGASLHNQTDRTGETALHLAARYS 68
Query: 48 YVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPL 105
D K L++ D N QD +G +PLH A + + +ILI + L+ +M TPL
Sbjct: 69 RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
Query: 106 HLAAQEGHVDMCKLLIKHQIDVNAQD 131
LAA+ M + LI DVNA D
Sbjct: 129 ILAARLAVEGMLEDLINSHADVNAVD 154
Score = 89.8 bits (224), Expect = 3e-23
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 33 NKMKKTPLHLAAQEG-------------YVDMCKLLIKHQIDV-NAQDIVGSSPLHYAAK 78
TPL +A+ G + I + N D G + LH AA+
Sbjct: 7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66
Query: 79 KNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKLLIKH-QIDVNAQDIE 133
++ D AK L+ + M +TPLH A + ++LI++ D++A+ +
Sbjct: 67 YSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123
Score = 68.6 bits (169), Expect = 3e-15
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 17/88 (19%)
Query: 60 IDVNAQDIVGSSPLHYAA-------------KKNKLDIAKILIESNRCSLENKMKK---T 103
+DVN + G +PL A+ +++ + I SL N+ + T
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFI-YQGASLHNQTDRTGET 59
Query: 104 PLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
LHLAA+ D K L++ D N QD
Sbjct: 60 ALHLAARYSRSDAAKRLLEASADANIQD 87
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 140 bits (355), Expect = 4e-41
Identities = 49/132 (37%), Positives = 81/132 (61%), Gaps = 2/132 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH AAK+N++++A+ L++ + E+ TPLHLAAQEG+ +M LL+ Q +
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
N + G +PLH A++ + +A +LI+ +M TPLH+A+ G++ + K L+
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331
Query: 122 KHQIDVNAQDIE 133
+HQ DVNA+
Sbjct: 332 QHQADVNAKTKL 343
Score = 137 bits (347), Expect = 7e-40
Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 4/133 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G +PLH AAK K+ +A++L+ K TPLH+A +D+ KLL+
Sbjct: 146 GFTPLHVAAKYGKVRVAELLL-ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS 204
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLL 120
++ G +PLH AAK+N++++A+ L++ + E+ TPLHLAAQEGH +M LL
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264
Query: 121 IKHQIDVNAQDIE 133
+ Q + N +
Sbjct: 265 LSKQANGNLGNKS 277
Score = 136 bits (346), Expect = 9e-40
Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 10/134 (7%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G +PLH A N LDI K+L+ S TPLH+AA++ V++ + L+++
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLL-PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 237
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMC 117
NA+ + G +PLH AA++ ++ +L+ N NK TPLHL AQEGHV +
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG---NKSGLTPLHLVAQEGHVPVA 294
Query: 118 KLLIKHQIDVNAQD 131
+LIKH + V+A
Sbjct: 295 DVLIKHGVMVDATT 308
Score = 135 bits (342), Expect = 3e-39
Identities = 43/132 (32%), Positives = 75/132 (56%), Gaps = 2/132 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH A+ L I K L++ ++ N +TPLH+AA+ G+ ++ K L++++ V
Sbjct: 14 GLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 73
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
NA+ +PLH AA+ ++ K+L+E+N +L TPLH+AA+EGHV+ L+
Sbjct: 74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 133
Query: 122 KHQIDVNAQDIE 133
+ + +
Sbjct: 134 EKEASQACMTKK 145
Score = 133 bits (338), Expect = 1e-38
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
+PLH AA+ ++ K+L+E+N +L TPLH+AA+EG+V+ L++ +
Sbjct: 80 DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ 139
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKLL 120
G +PLH AAK K+ +A++L+ K TPLH+A ++D+ KLL
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRVAELLL-ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198
Query: 121 IKHQIDVNAQDIE 133
+ ++
Sbjct: 199 LPRGGSPHSPAWN 211
Score = 126 bits (318), Expect = 9e-36
Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 7/136 (5%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLH A++ + +A +LI+ +M TPLH+A+ G + + K L++HQ DV
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKLL 120
NA+ +G SPLH AA++ DI +L+ N S TPL +A + G++ + +L
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTDIVTLLL-KNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Query: 121 ---IKHQIDVNAQDIE 133
V D
Sbjct: 397 KVVTDETSFVLVSDKH 412
Score = 109 bits (274), Expect = 2e-29
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
+ TPLH+A+ G++ + K L++ N ++ +PLH AA+ ++AK L+ N
Sbjct: 11 GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL-QN 69
Query: 93 RCSLE--NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+ + K +TPLH AA+ GH +M KLL+++ + N
Sbjct: 70 KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 110
Score = 80.2 bits (199), Expect = 5e-19
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 58 HQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDM 116
I G +PLH A+ L I K L++ ++ N +TPLH+AA+ GH ++
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62
Query: 117 CKLLIKHQIDVNAQD 131
K L++++ VNA+
Sbjct: 63 AKYLLQNKAKVNAKA 77
Score = 63.3 bits (155), Expect = 5e-13
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLL---IKH 58
G SPLH AA++ DI +L+ N S TPL +A + GY+ + +L
Sbjct: 344 GYSPLHQAAQQGHTDIVTLLL-KNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 402
Query: 59 QIDVNAQDIVGSSPLHYA 76
V D S
Sbjct: 403 TSFVLVSDKHRMSFPETV 420
Score = 47.9 bits (115), Expect = 1e-07
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 98 NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
+ TPLH+A+ GH+ + K L++ N +++
Sbjct: 11 GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVK 46
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 133 bits (337), Expect = 5e-41
Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 9/134 (6%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
S +H A + +LD K + N + ++ TPL A+ G ++ + L++ D
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMC 117
+ S L A+ DI +L+E N + TPL A + HV
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIY---DWNGGTPLLYAVRGNHVKCV 118
Query: 118 KLLIKHQIDVNAQD 131
+ L+ D+ +
Sbjct: 119 EALLARGADLTTEA 132
Score = 128 bits (325), Expect = 4e-39
Identities = 32/136 (23%), Positives = 67/136 (49%), Gaps = 10/136 (7%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
G +PL +A+ +++ + L+E + K +++ L LA+ GY D+ LL++
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHIL---AKERESALSLASTGGYTDIVGLLLERD 92
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMC 117
+D+N D G +PL YA + N + + L+ + L + TP+ LA G+ +
Sbjct: 93 VDINIYDWNGGTPLLYAVRGNHVKCVEALL-ARGADLTTEADSGYTPMDLAVALGYRKVQ 151
Query: 118 KLLIKHQIDVNAQDIE 133
+++ H + + ++
Sbjct: 152 QVIENHILKLFQSNLV 167
Score = 70.5 bits (174), Expect = 2e-16
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
G +PL YA + N + + L+ + L + TP+ LA GY + +++ H +
Sbjct: 102 GGTPLLYAVRGNHVKCVEALL-ARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK 160
Query: 62 VNAQDIVGSSP 72
+ ++V + P
Sbjct: 161 LFQSNLVPADP 171
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 134 bits (341), Expect = 6e-41
Identities = 48/132 (36%), Positives = 72/132 (54%), Gaps = 5/132 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
G +PLH A + + +ILI + L+ +M TPL LAA+ M + LI D
Sbjct: 58 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 117
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
VNA D +G S LH+AA N +D A +L+ N + + N ++TPL LAA+EG + K+
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREETPLFLAAREGSYETAKV 176
Query: 120 LIKHQIDVNAQD 131
L+ H + + D
Sbjct: 177 LLDHFANRDITD 188
Score = 127 bits (322), Expect = 5e-38
Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKH-QI 60
G + LH AA+ ++ D AK L+ + M +TPLH A + ++LI++
Sbjct: 25 GETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCK 118
D++A+ G++PL AA+ + + LI ++ + K+ LH AA +VD
Sbjct: 84 DLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDDLGKSALHWAAAVNNVDAAV 142
Query: 119 LLIKHQIDVNAQD 131
+L+K+ + + Q+
Sbjct: 143 VLLKNGANKDMQN 155
Score = 127 bits (321), Expect = 5e-38
Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
G++PL AA+ + + LI ++ + K+ LH AA VD +L+K+ +
Sbjct: 92 GTTPLILAARLAVEGMLEDLI-NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 150
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
+ Q+ +PL AA++ + AK+L+ + + + + M + P +A + H D+ +L
Sbjct: 151 KDMQNNREETPLFLAAREGSYETAKVLL-DHFANRDITDHMDRLPRDIAQERMHHDIVRL 209
Query: 120 LIKHQIDVNAQD 131
L ++ + + Q
Sbjct: 210 LDEYNLVRSPQL 221
Score = 113 bits (285), Expect = 2e-32
Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 15 NKLDIAKILIESNRCSLEN---KMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSS 71
+ + I SL N + +T LHLAA+ D K L++ D N QD +G +
Sbjct: 2 DAPAVISDFI-YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 72 PLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKLLIKHQIDVNA 129
PLH A + + +ILI + L+ +M TPL LAA+ M + LI DVNA
Sbjct: 61 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120
Query: 130 QDIE 133
D
Sbjct: 121 VDDL 124
Score = 99.0 bits (248), Expect = 5e-27
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G S LH+AA N +D A +L+ N + + N ++TPL LAA+EG + K+L+ H +
Sbjct: 125 GKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 183
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLH 106
+ D + P A ++ DI ++L E N ++ LH
Sbjct: 184 RDITDHMDRLPRDIAQERMHHDIVRLLDE------YNLVRSPQLH 222
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 132 bits (334), Expect = 8e-41
Identities = 37/130 (28%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
L AA+ + D +IL+ + + + +PLHLAAQ G+ ++L++ + +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61
Query: 64 AQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKLLI 121
A+ V +PLH AA + +I ++L+ + + + +K T LH A + H ++ +LLI
Sbjct: 62 ARTKVDRTPLHMAASEGHANIVEVLL-KHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Query: 122 KHQIDVNAQD 131
K+ DV+ Q
Sbjct: 121 KYGADVHTQS 130
Score = 118 bits (299), Expect = 1e-35
Identities = 38/123 (30%), Positives = 73/123 (59%), Gaps = 10/123 (8%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G+SPLH AA+ ++L+ S + K+ +TPLH+AA EG+ ++ ++L+KH D
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMC 117
VNA+D++ + LH+A + N ++ ++LI+ + ++K KT ++ G+ D+
Sbjct: 93 VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT---QSKFCKTAFDISIDNGNEDLA 149
Query: 118 KLL 120
++L
Sbjct: 150 EIL 152
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 132 bits (335), Expect = 1e-40
Identities = 26/132 (19%), Positives = 53/132 (40%), Gaps = 5/132 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
+ ++ ++ +++ L +PLH A +EG + ++LI
Sbjct: 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR 64
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
+N + +PLH AA DI + L+ + + N+ PLH A G + +
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLL-QYKADINAVNEHGNVPLHYACFWGQDQVAED 123
Query: 120 LIKHQIDVNAQD 131
L+ + V+ +
Sbjct: 124 LVANGALVSICN 135
Score = 128 bits (324), Expect = 6e-39
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 14/137 (10%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
G SPLH+A ++ + + ++LI N N+ TPLHLAA G+ D+ + L++++
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINV---MNRGDDTPLHLAASHGHRDIVQKLLQYK 95
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVD 115
D+NA + G+ PLHYA + +A+ L+ + + C NK + P+ A
Sbjct: 96 ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC---NKYGEMPVDKAKAPLREL 152
Query: 116 MCKLLIKHQIDVNAQDI 132
+ + K ++N
Sbjct: 153 LRERAEKMGQNLNRIPY 169
Score = 104 bits (261), Expect = 2e-29
Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
+PLH AA DI + L+ + + N+ PLH A G + + L+ +
Sbjct: 72 DDTPLHLAASHGHRDIVQKLL-QYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 130
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGH 113
V+ + G P+ A + + + + + + + P +G
Sbjct: 131 VSICNKYGEMPVDKAKAPLRELLRERAEKMGQN-----LNRIPYKDTFWKGT 177
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 132 bits (334), Expect = 1e-40
Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 6/132 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
S +H A + ++ I + + + TPL AA G + + + L+++ D
Sbjct: 3 NSLSVHQLAAQGEMLYLATRI-EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
S L A K DI K+L+ + + TPL A HV K+
Sbjct: 62 PQLLGKGRESALSLACSKGYTDIVKMLL-DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 120
Query: 120 LIKHQIDVNAQD 131
L++ D +
Sbjct: 121 LLESGADPTIET 132
Score = 127 bits (323), Expect = 6e-39
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK--TPLHLAAQEGYVDMCKLLIKHQID 61
G +PL +AA ++ + + L+ N + K + L LA +GY D+ K+L+ +D
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLL-QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD 94
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMC 117
VN D G +PL YA N + K+L+ES +E + LA G+ +
Sbjct: 95 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT---IETDSGYNSMDLAVALGYRSVQ 151
Query: 118 KLLIKHQIDVNAQD 131
+++ H + +
Sbjct: 152 QVIESHLLKLLQNI 165
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 134 bits (339), Expect = 2e-40
Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
GS+ LH AAKK ++ + L+ + + + + TP+ A + +VD+ KLL+ D
Sbjct: 77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKL 119
+N +D + LH+AA +DIA+IL+ + +C L +PLH+AA+E D L
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILL-AAKCDLHAVNIHGDSPLHIAARENRYDCVVL 195
Query: 120 LIKHQIDVNAQDIE 133
+ DV ++ E
Sbjct: 196 FLSRDSDVTLKNKE 209
Score = 131 bits (332), Expect = 2e-39
Identities = 42/134 (31%), Positives = 74/134 (55%), Gaps = 9/134 (6%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
SPLH AA+ +DI +L+++ + C ++ ++TPL AA+ +++ K LIK
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTC---SEDQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMC 117
V+ +D GS+ LH AAKK ++ + L+ + + + + TP+ A + HVD+
Sbjct: 68 ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127
Query: 118 KLLIKHQIDVNAQD 131
KLL+ D+N +D
Sbjct: 128 KLLLSKGSDINIRD 141
Score = 121 bits (307), Expect = 1e-35
Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 6/127 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G +P+ +A + +D+ K+L+ S + + + LH AA G VD+ ++L+ + D
Sbjct: 111 GWTPMIWATEYKHVDLVKLLL-SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD 169
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKL 119
++A +I G SPLH AA++N+ D + + S + K K +TPL A+ V
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLFL-SRDSDVTLKNKEGETPLQCASLNSQVWSALQ 228
Query: 120 LIKHQID 126
+ K D
Sbjct: 229 MSKALQD 235
Score = 104 bits (263), Expect = 4e-29
Identities = 37/103 (35%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
Query: 32 ENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES 91
E++ K++PLH AA+ G+VD+C +L++ +++ +PL AA+ N L+ K LI
Sbjct: 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI-K 65
Query: 92 NRCSLENKMK--KTPLHLAAQEGHVDMCKLLIKH-QIDVNAQD 131
++ K T LHLAA++GH ++ + L+ + Q+DVN QD
Sbjct: 66 AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD 108
Score = 78.6 bits (195), Expect = 5e-19
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVD 115
++ + SPLH AA+ +DI +L+++ + C ++ ++TPL AA+ H++
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC---SEDQRTPLMEAAENNHLE 58
Query: 116 MCKLLIKHQIDVNAQD 131
K LIK V+ +D
Sbjct: 59 AVKYLIKAGALVDPKD 74
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 133 bits (337), Expect = 3e-40
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 10/140 (7%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCS-----LENKMKKTPLHLAAQEGYVDMCKLLIKH 58
G +PLH A + L L+ + + N +++TPLHLA + +LL+
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68
Query: 59 QIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK-----TPLHLAAQEGH 113
A D G + H A + + L++S + + T LH+A
Sbjct: 69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128
Query: 114 VDMCKLLIKHQIDVNAQDIE 133
+ +LL++ D++A DI+
Sbjct: 129 QETVQLLLERGADIDAVDIK 148
Score = 130 bits (329), Expect = 5e-39
Identities = 30/136 (22%), Positives = 64/136 (47%), Gaps = 9/136 (6%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK-----TPLHLAAQEGYVDMCKLLIKH 58
G + H A + + L++S + + T LH+A + +LL++
Sbjct: 79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER 138
Query: 59 QIDVNAQDI-VGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVD 115
D++A DI G SPL +A + N L + ++L+ + ++ +M + LH A+ G +
Sbjct: 139 GADIDAVDIKSGRSPLIHAVENNSLSMVQLLL-QHGANVNAQMYSGSSALHSASGRGLLP 197
Query: 116 MCKLLIKHQIDVNAQD 131
+ + L++ D + ++
Sbjct: 198 LVRTLVRSGADSSLKN 213
Score = 125 bits (316), Expect = 4e-37
Identities = 31/136 (22%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKH--- 58
+PLH A + ++L+ + S ++ +T HLA + + L+
Sbjct: 46 RQTPLHLAVITTLPSVVRLLV-TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAP 104
Query: 59 -QIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHLAAQEGHVD 115
+D+ A++ G + LH A + ++L+E ++ +++ K ++PL A + +
Sbjct: 105 GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS 164
Query: 116 MCKLLIKHQIDVNAQD 131
M +LL++H +VNAQ
Sbjct: 165 MVQLLLQHGANVNAQM 180
Score = 121 bits (306), Expect = 1e-35
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G + LH A + ++L+E ++ +++ K ++PL A + + M +LL++H +
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
VNAQ GSS LH A+ + L + + L+ + N TPL +A +D+ +
Sbjct: 176 VNAQMYSGSSALHSASGRGLLPLVRTLV-RSGADSSLKNCHNDTPLMVARSRRVIDILRG 234
Query: 120 LIKH 123
Sbjct: 235 KATR 238
Score = 94.4 bits (236), Expect = 4e-25
Identities = 20/109 (18%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLI----KHQIDVNAQDIVGSSPLHYAAKKNKLDIAKIL 88
++ TPLH+A +G + L+ + +++ + + +PLH A + ++L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 89 IESNRCSLE--NKMKKTPLHLAAQEGHVDMCKLLIKH----QIDVNAQD 131
+ + S ++ +T HLA + + L+ +D+ A++
Sbjct: 66 V-TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 113
Score = 76.0 bits (188), Expect = 5e-18
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCS-----LENKMKKTPLHLAAQEGHVDM 116
D G +PLH A + L L+ + + N +++TPLHLA +
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 117 CKLLIKHQIDVNAQD 131
+LL+ A D
Sbjct: 62 VRLLVTAGASPMALD 76
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 129 bits (326), Expect = 2e-39
Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 6/132 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
L AA+ + D +IL+ +N + + TPLHLAA G++++ ++L+K+ D
Sbjct: 14 LGKKLLEAARAGRDDEVRILM-ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
VNA D G +PL AA L+I ++L+ N + + TPLHLAA GH+++ ++
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLL-KNGADVNANDMEGHTPLHLAAMFGHLEIVEV 131
Query: 120 LIKHQIDVNAQD 131
L+K+ DVNAQD
Sbjct: 132 LLKNGADVNAQD 143
Score = 120 bits (305), Expect = 4e-36
Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 6/124 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
G +PLH AA L+I ++L+ N + TPL LAA G++++ ++L+K+ D
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLL-KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
VNA D+ G +PLH AA L+I ++L+ N + +K KT ++ G+ D+ ++
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 120 LIKH 123
L K
Sbjct: 165 LQKL 168
Score = 95.9 bits (240), Expect = 2e-26
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G +PL AA L+I ++L+ N + + TPLHLAA G++++ ++L+K+ D
Sbjct: 80 GMTPLRLAALFGHLEIVEVLL-KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
VNAQD G + + D+A+IL + N
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 68.5 bits (169), Expect = 7e-16
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKLL 120
+ L AA+ + D +IL+ +N + + TPLHLAA GH+++ ++L
Sbjct: 8 HHHGSDLGKKLLEAARAGRDDEVRILM-ANGADVNAEDASGWTPLHLAAFNGHLEIVEVL 66
Query: 121 IKHQIDVNAQD 131
+K+ DVNA D
Sbjct: 67 LKNGADVNAVD 77
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 130 bits (330), Expect = 3e-39
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 6/134 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNR---CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
G +P H A L++ K L + + T LHLA + + ++ + LI++
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCK 118
V +D PLH AA L + ++L + ++ +K TPL A EGH D
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 119 LLI-KHQIDVNAQD 131
LL+ K+ + + D
Sbjct: 192 LLVEKYGAEYDLVD 205
Score = 121 bits (307), Expect = 9e-36
Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 8/137 (5%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
+ + PLH A +N+ + L+ S L ++ + PLH + ++ L+
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 61 DVNAQDIV---GSSPLHYAAKKNKLDIAKILIESNR---CSLENKMKKTPLHLAAQEGHV 114
+VN D G +P H A L++ K L + + T LHLA +
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 115 DMCKLLIKHQIDVNAQD 131
++ + LI++ V +D
Sbjct: 121 EVSQFLIENGASVRIKD 137
Score = 112 bits (284), Expect = 2e-32
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKH-QI 60
G + LH A K ++++ LI N S+ +K + PLH AA G + + +LL +
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLI-ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCK 118
VN QD G +PL +A + D A +L+E + +A E K
Sbjct: 166 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVK---K 222
Query: 119 LLIKH 123
+ +
Sbjct: 223 FFLNN 227
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 127 bits (321), Expect = 3e-38
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
+ L A +++ + +IL ++ TPL++A +++ K LI D
Sbjct: 6 VGALLEAANQRDTKKVKEILQ-DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD 64
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
+N Q+ + SP YA + + +I +++ L N+ L AA++GH+D KL
Sbjct: 65 INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKL 124
Query: 120 LIKH-QIDVNAQD 131
L++ + D++ Q+
Sbjct: 125 LLEDGREDIDFQN 137
Score = 117 bits (297), Expect = 1e-34
Identities = 39/140 (27%), Positives = 70/140 (50%), Gaps = 15/140 (10%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKH- 58
G++PL+ A N ++IAK LI+ N +N + +P A +G ++ ++KH
Sbjct: 39 GNTPLNIAVHNNDIEIAKALIDRGADINL---QNSISDSPYLYAGAQGRTEILAYMLKHA 95
Query: 59 QIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAA-----QE 111
D+N + G + L AA+K +D K+L+E R ++ N T L A +
Sbjct: 96 TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQ 155
Query: 112 GHVDMCKLLIKHQIDVNAQD 131
+ D+ KLL+++ D + +D
Sbjct: 156 LYQDIVKLLMENGADQSIKD 175
Score = 111 bits (280), Expect = 4e-32
Identities = 31/132 (23%), Positives = 66/132 (50%), Gaps = 15/132 (11%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKH-QI 60
SP YA + + +I +++ L N+ L AA++G++D KLL++ +
Sbjct: 72 SDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE 131
Query: 61 DVNAQDIVGSSPLHYAAKKNK-----LDIAKILIES----NRCSLENKMKKTPLHLAAQE 111
D++ Q+ G + L A + DI K+L+E+ + +++ +T + A Q+
Sbjct: 132 DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS---IKDNSGRTAMDYANQK 188
Query: 112 GHVDMCKLLIKH 123
G+ ++ K+L ++
Sbjct: 189 GYTEISKILAQY 200
Score = 99.8 bits (250), Expect = 2e-27
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES- 91
L A Q + ++L V+ D G++PL+ A N ++IAK LI+
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 92 ---NRCSLENKMKKTPLHLAAQEGHVDMCKLLIKH-QIDVNAQD 131
N +N + +P A +G ++ ++KH D+N +
Sbjct: 63 ADINL---QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHN 103
Score = 88.3 bits (220), Expect = 5e-23
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAA-----QEGYVDMCKLLI 56
G + L AA+K +D K+L+E R ++ N T L A + Y D+ KLL+
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165
Query: 57 KHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
++ D + +D G + + YA +K +I+KIL + N
Sbjct: 166 ENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201
Score = 67.9 bits (167), Expect = 3e-15
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 65 QDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKLLIK 122
+ + L A +++ + +IL ++ TPL++A +++ K LI
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQ-DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60
Query: 123 HQIDVNAQD 131
D+N Q+
Sbjct: 61 RGADINLQN 69
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 124 bits (314), Expect = 5e-38
Identities = 50/124 (40%), Positives = 80/124 (64%), Gaps = 6/124 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
G +PLH AA+ L++ K+L+ + K K +TPLHLAA+ G++++ KLL++ D
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKL 119
VNA+D G +PLH AA+ L++ K+L+ + K K +TPLHLAA+ GH+++ KL
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 120 LIKH 123
L++
Sbjct: 120 LLEA 123
Score = 108 bits (272), Expect = 1e-31
Identities = 44/97 (45%), Positives = 68/97 (70%), Gaps = 3/97 (3%)
Query: 37 KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSL 96
+TPLHLAA+ G++++ KLL++ DVNA+D G +PLH AA+ L++ K+L+ +
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADV 61
Query: 97 ENKMK--KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
K K +TPLHLAA+ GH+++ KLL++ DVNA+D
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 128 bits (324), Expect = 9e-38
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
+ L A + +D+ + L+E N E + TPLH A Q D+ +LL++H D
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMC 117
+ G++P AA + + K+ + N C + T AA G V
Sbjct: 65 PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC---DFYGFTAFMEAAVYGKVKAL 121
Query: 118 KLLIKHQIDVNAQD 131
K L K +VN +
Sbjct: 122 KFLYKRGANVNLRR 135
Score = 127 bits (322), Expect = 2e-37
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 8/137 (5%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMC----KLLIK 57
G++ L AA+K +++ KIL++ + + M + L A LL+
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207
Query: 58 HQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVD 115
H DVN + G +PL A +K L + + L+E + + KT L LA +
Sbjct: 208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 267
Query: 116 MCKLLIKHQIDVNAQDI 132
+ +LL K + D+
Sbjct: 268 IAELLCKRGASTDCGDL 284
Score = 122 bits (310), Expect = 9e-36
Identities = 43/144 (29%), Positives = 61/144 (42%), Gaps = 19/144 (13%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
G +PLH A + ++ DI ++L+ K TP LAA G V + KL +
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPVL---RKKNGATPFLLAAIAGSVKLLKLFLSKG 95
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIE-----------SNRCSLENKMKKTPLHLA 108
DVN D G + AA K+ K L + K T L A
Sbjct: 96 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155
Query: 109 AQEGHVDMCKLLIKHQ-IDVNAQD 131
A++GHV++ K+L+ DVNA D
Sbjct: 156 AEKGHVEVLKILLDEMGADVNACD 179
Score = 115 bits (290), Expect = 1e-32
Identities = 34/150 (22%), Positives = 56/150 (37%), Gaps = 23/150 (15%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
G++P AA + + K+ + N C + T AA G V K L K
Sbjct: 72 GATPFLLAAIAGSVKLLKLFLSKGADVNEC---DFYGFTAFMEAAVYGKVKALKFLYKRG 128
Query: 60 IDVNAQD----------IVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHL 107
+VN + G++ L AA+K +++ KIL++ + + M + L
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188
Query: 108 AAQEGHVDMC----KLLIKHQIDVNAQDIE 133
A LL+ H DVN +
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVNVRGER 218
Score = 100 bits (251), Expect = 7e-27
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDI-VGSSPLHYAAKKNKLDIAKILIES 91
L A Q VD+ + L++ +VN Q+ G +PLH A + ++ DI ++L+
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 92 ----NRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
K TP LAA G V + KL + DVN D
Sbjct: 62 GADPVL---RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECD 102
Score = 73.3 bits (181), Expect = 7e-17
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
G +PL A +K L + + L+E + + KT L LA + + +LL K
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278
Query: 62 VNAQDIV 68
+ D+V
Sbjct: 279 TDCGDLV 285
Score = 47.1 bits (113), Expect = 2e-07
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 98 NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
L A Q VD+ + L++ +VN Q+ E
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE 37
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 123 bits (312), Expect = 1e-37
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
G + LH A+ K + + L+++ N ++ TPLH A G++ + +LL++H+
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCK 118
VN SPLH AAK +DI K+L+ + N P+ E +
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLL 126
Query: 119 LLIKHQIDVNA 129
L K++ +A
Sbjct: 127 LPEKNE-SSSA 136
Score = 109 bits (275), Expect = 5e-32
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
N +T LH+A+ +G + + L+++ D N +D G +PLH A L + ++L+ +
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL-QH 65
Query: 93 RCSLE--NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
+ + +PLH AA+ GHVD+ KLL+ + NA +I
Sbjct: 66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF 108
Score = 72.5 bits (179), Expect = 2e-17
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVD 115
ID + G + LH A+ K + + L+++ N ++ TPLH A GH+
Sbjct: 2 IDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLK 57
Query: 116 MCKLLIKHQIDVNAQD 131
+ +LL++H+ VN
Sbjct: 58 VVELLLQHKALVNTTG 73
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 125 bits (317), Expect = 1e-37
Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
+PL A + L+ N LE+K T L A + + + + L+ +
Sbjct: 35 NRTPLMVACMLGMENAIDKLV-ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN 93
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
VN +D G +PL ++ +++ L+ + ++ N +TPL +A++ G ++ K
Sbjct: 94 VNTKDFSGKTPLMWSIIFGYSEMSYFLL-EHGANVNDRNLEGETPLIVASKYGRSEIVKK 152
Query: 120 LIKHQIDVNAQD 131
L++ D++A+D
Sbjct: 153 LLELGADISARD 164
Score = 119 bits (301), Expect = 3e-35
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 8/130 (6%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
G +K+ L + +TPL +A G + L+++ +
Sbjct: 8 GEIVEKIKDEKSINQNLDFLRNYR-----DSYNRTPLMVACMLGMENAIDKLVENFDKLE 62
Query: 64 AQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKLLI 121
+DI GS+ L +A K N+L IA+ L+ S ++ + KTPL + G+ +M L+
Sbjct: 63 DKDIEGSTALIWAVKNNRLGIAEKLL-SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL 121
Query: 122 KHQIDVNAQD 131
+H +VN ++
Sbjct: 122 EHGANVNDRN 131
Score = 116 bits (294), Expect = 3e-34
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
GS+ L +A K N+L IA+ L+ S ++ + KTPL + GY +M L++H +
Sbjct: 68 GSTALIWAVKNNRLGIAEKLL-SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN 126
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
VN +++ G +PL A+K + +I K L+ + + T A G ++ K+
Sbjct: 127 VNDRNLEGETPLIVASKYGRSEIVKKLL-ELGADISARDLTGLTAEASARIFGRQEVIKI 185
Query: 120 LIKH 123
+
Sbjct: 186 FTEV 189
Score = 94.0 bits (235), Expect = 2e-25
Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G +PL ++ +++ L+ + ++ N +TPL +A++ G ++ K L++ D
Sbjct: 101 GKTPLMWSIIFGYSEMSYFLL-EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD 159
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNR 93
++A+D+ G + A + ++ KI E R
Sbjct: 160 ISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191
Score = 84.0 bits (209), Expect = 1e-21
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 9/101 (8%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
+K + + ++ L N +D +PL A + L+ N
Sbjct: 5 DKNGEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPLMVACMLGMENAIDKLV-EN 57
Query: 93 RCSLENKMK--KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
LE+K T L A + + + + L+ +VN +D
Sbjct: 58 FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD 98
Score = 60.9 bits (149), Expect = 1e-12
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIK 122
+ D G +K+ L + +TPL +A G + L++
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFLRNYR-----DSYNRTPLMVACMLGMENAIDKLVE 56
Query: 123 HQIDVNAQD 131
+ + +D
Sbjct: 57 NFDKLEDKD 65
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 126 bits (320), Expect = 1e-37
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
S+PLH+A ++ L + L+ + +HLAAQ G+ + LI D
Sbjct: 76 NSTPLHWATRQGHLSMVVQLM-KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD 134
Query: 62 VNAQDIVGSSPLHYAAKK-NKLDIAKILIESNRCSLE---NKMKKTPLHLAAQEGHVDMC 117
V+ D G +PL +AA + + +D ++L+ + S+ K T LH A G+ +
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLL-TFNVSVNLGDKYHKNTALHWAVLAGNTTVI 193
Query: 118 KLLIKHQIDVNAQD 131
LL++ +V+AQ+
Sbjct: 194 SLLLEAGANVDAQN 207
Score = 125 bits (316), Expect = 5e-37
Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 7/133 (5%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
+ + A + + + L+ + +K T LH AA +D+ K I
Sbjct: 9 STWDIVKATQYGIYERCRELV-EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAI 67
Query: 62 VNAQDI-VGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCK 118
V+ + S+PLH+A ++ L + L+ + +HLAAQ GH +
Sbjct: 68 VDQLGGDLNSTPLHWATRQGHLSMVVQLM-KYGADPSLIDGEGCSCIHLAAQFGHTSIVA 126
Query: 119 LLIKHQIDVNAQD 131
LI DV+ D
Sbjct: 127 YLIAKGQDVDMMD 139
Score = 124 bits (313), Expect = 1e-36
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
+ LH+AA N++D+ K I L + TPLH A ++G++ M L+K+ D
Sbjct: 42 NVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD 101
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGH-VDM 116
+ D G S +H AA+ I LI + ++ TPL AA H VD
Sbjct: 102 PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM---MDQNGMTPLMWAAYRTHSVDP 158
Query: 117 CKLLIKHQIDVNAQD 131
+LL+ + VN D
Sbjct: 159 TRLLLTFNVSVNLGD 173
Score = 114 bits (289), Expect = 5e-33
Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 12/136 (8%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGY-VDMCKLLIKH 58
G S +H AA+ I LI + ++ TPL AA + VD +LL+
Sbjct: 109 GCSCIHLAAQFGHTSIVAYLIAKGQDVDM---MDQNGMTPLMWAAYRTHSVDPTRLLLTF 165
Query: 59 QIDVNAQD-IVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVD 115
+ VN D ++ LH+A + +L+ +++ + ++ L LA Q +V
Sbjct: 166 NVSVNLGDKYHKNTALHWAVLAGNTTVISLLL-EAGANVDAQNIKGESALDLAKQRKNVW 224
Query: 116 MCKLLIKHQIDVNAQD 131
M L + + +
Sbjct: 225 MINHLQEARQAKGYDN 240
Score = 108 bits (272), Expect = 2e-30
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES- 91
+ + A Q G + C+ L++ DV D + LH+AA N++D+ K I
Sbjct: 6 DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKG 65
Query: 92 -NRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
L + TPLH A ++GH+ M L+K+ D + D E
Sbjct: 66 AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE 108
Score = 72.9 bits (180), Expect = 7e-17
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
+ D + + A + + + L+ + +K T LH AA +D+ K
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELV-EAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 120 LIKHQIDVNAQDIE 133
I V+ +
Sbjct: 61 YISKGAIVDQLGGD 74
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 127 bits (323), Expect = 1e-37
Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 10/135 (7%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE-NKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
+PL A D +L+ + S++ +P+H AA+ G+V+ LI + ++
Sbjct: 125 WHTPLFNACVSGSWDCVNLLL-QHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNI 183
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMCK 118
+ + +PL+ A + + K L+ES N+ K + +PLH + ++
Sbjct: 184 DHKISHLGTPLYLACENQQRACVKKLLESGADVNQ----GKGQDSPLHAVVRTASEELAC 239
Query: 119 LLIKHQIDVNAQDIE 133
LL+ D A++ E
Sbjct: 240 LLMDFGADTQAKNAE 254
Score = 114 bits (288), Expect = 2e-32
Identities = 32/130 (24%), Positives = 46/130 (35%), Gaps = 9/130 (6%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
GS P ++ L+ + +P+H AA G+ + LI VN
Sbjct: 33 GSKPAGPRDFPGIRLLSNPLMG------DAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN 86
Query: 64 AQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKLLI 121
SPLH A L KIL+ + + TPL A G D LL+
Sbjct: 87 IITADHVSPLHEACLGGHLSCVKILL-KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLL 145
Query: 122 KHQIDVNAQD 131
+H V +
Sbjct: 146 QHGASVQPES 155
Score = 114 bits (287), Expect = 3e-32
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 8/130 (6%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
+SP+H AA++ ++ LI + ++++K+ TPL+LA + K L++ D
Sbjct: 157 LASPIHEAARRGHVECVNSLI-AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 215
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKL 119
VN SPLH + ++A +L+ + K K P+ L E +
Sbjct: 216 VNQGKG-QDSPLHAVVRTASEELACLLM-DFGADTQAKNAEGKRPVELVPPESPLAQL-F 272
Query: 120 LIKHQIDVNA 129
L + +
Sbjct: 273 LEREGASLPK 282
Score = 87.2 bits (217), Expect = 5e-22
Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 16/131 (12%)
Query: 11 AAKKNKLDIAKILIE------SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA 64
+ + + L+ S P G L+ + + +A
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGDA 56
Query: 65 QDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKLLIK 122
SP+H AA + LI S ++ +PLH A GH+ K+L+K
Sbjct: 57 VS--DWSPMHEAAIHGHQLSLRNLI-SQGWAVNIITADHVSPLHEACLGGHLSCVKILLK 113
Query: 123 HQIDVNAQDIE 133
H VN +
Sbjct: 114 HGAQVNGVTAD 124
Score = 82.9 bits (206), Expect = 2e-20
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 1/92 (1%)
Query: 42 LAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK 101
+ + + L+ + + D + + D I + SN +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDG-KQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSD 59
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
+P+H AA GH + LI VN +
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITAD 91
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 124 bits (313), Expect = 2e-37
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 11/134 (8%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
L AA + + + L+ + + KT L + G + L+K
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMC 117
N QD G+SP+H AA+ LD K+L+E N + P+HLA QEGH +
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV---PDGTGALPIHLAVQEGHTAVV 117
Query: 118 KLLIKHQIDVNAQD 131
L D++ +D
Sbjct: 118 SFLAAE-SDLHRRD 130
Score = 118 bits (299), Expect = 2e-35
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
G + L IA L++ N + +P+H AA+ G++D K+L++H
Sbjct: 36 GKTALQVMMF-GSTAIALELLKQGASPNVQ---DTSGTSPVHDAARTGFLDTLKVLVEHG 91
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKL 119
DVN D G+ P+H A ++ + L + + TPL LA Q G D+ +
Sbjct: 92 ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDI 151
Query: 120 LIKH 123
L H
Sbjct: 152 LQGH 155
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 126 bits (318), Expect = 2e-37
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Query: 4 GSSPLHYAAKKN----KLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIK 57
G S LH A +++ + + + L N +++TPLHLA ++ + L+
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVK-GDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66
Query: 58 HQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE-------SNRCSLENKMKKTPLHLAAQ 110
D +D G++PLH A ++ L +L + + N T LHLA+
Sbjct: 67 AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 126
Query: 111 EGHVDMCKLLIKHQIDVNAQD 131
G++ + +LL+ DVNAQ+
Sbjct: 127 HGYLGIVELLVSLGADVNAQE 147
Score = 124 bits (315), Expect = 5e-37
Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 11/141 (7%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE-------SNRCSLENKMKKTPLHLAAQEGYVDMCKLLI 56
G++PLH A ++ L +L + + N T LHLA+ GY+ + +LL+
Sbjct: 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 137
Query: 57 KHQIDVNAQDIV-GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGH 113
DVNAQ+ G + LH A D+ +L+ + +P L
Sbjct: 138 SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQGYSPYQLTWGRPS 196
Query: 114 VDMCKLLIKHQIDVNAQDIEA 134
+ + L + ++ E+
Sbjct: 197 TRIQQQLGQLTLENLQMLPES 217
Score = 123 bits (312), Expect = 2e-36
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
+PLH A N+ +IA+ L+ C E + TPLHLA ++G + +L +
Sbjct: 45 QQTPLHLAVITNQPEIAEALL-GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT 103
Query: 62 ------VNAQDIVGSSPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGH 113
+ A + G + LH A+ L I ++L+ + + E +T LHLA +
Sbjct: 104 PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN 163
Query: 114 VDMCKLLIKHQIDVNAQD 131
D+ LL+K DVN
Sbjct: 164 PDLVSLLLKCGADVNRVT 181
Score = 100 bits (252), Expect = 1e-27
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 3/116 (2%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G + LH A+ L I ++L+ + + E +T LHLA D+ LL+K D
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE-NKMKKTPLHLAAQEGHVDM 116
VN G SP + I + L + +L+ + + +
Sbjct: 177 VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEF 232
Score = 94.9 bits (237), Expect = 3e-25
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 33 NKMKKTPLHLAAQEGY----VDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKIL 88
+ + LHLA +++ + + +N Q+ + +PLH A N+ +IA+ L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 89 IESNRCSLENKMK--KTPLHLAAQEGHVDMCKLLIKHQIDVN-AQDIEA 134
+ C E + TPLHLA ++G + +L + + ++A
Sbjct: 65 L-GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA 112
Score = 77.6 bits (192), Expect = 1e-18
Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 3/84 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
G + LH A D+ +L+ + +P L + + L + ++
Sbjct: 151 GRTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 209
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIA 85
Y + +
Sbjct: 210 NLQMLPESEDEESYDTESEFTEFT 233
Score = 65.3 bits (160), Expect = 4e-14
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 12/81 (14%)
Query: 57 KHQIDVNAQDIVGSSPLHYAAKKN----KLDIAKILIESNRCSLE--NKMKKTPLHLAAQ 110
K Q+ + G S LH A +++ + + + L N +++TPLHLA
Sbjct: 1 KQQLTED-----GDSFLHLAIIHEEKALTMEVIRQVK-GDLAFLNFQNNLQQTPLHLAVI 54
Query: 111 EGHVDMCKLLIKHQIDVNAQD 131
++ + L+ D +D
Sbjct: 55 TNQPEIAEALLGAGCDPELRD 75
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 125 bits (316), Expect = 2e-37
Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
+ K + + I SN + + + PLH AA+ G + + + +++ VN
Sbjct: 45 SDTNWWKGTSKGRTGL----IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN 100
Query: 64 AQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKLLI 121
D GS+ L++A DI ++L L NK+ T LH AA +G+ D+ +LL+
Sbjct: 101 GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
Query: 122 KHQIDVNAQDIE 133
+ ++IE
Sbjct: 161 AKGARTDLRNIE 172
Score = 123 bits (310), Expect = 2e-36
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 5/135 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQ-I 60
+PLH AAK+ L + + NR + K T L+ A G+ D+ ++L I
Sbjct: 73 IDNPLHEAAKRGNLSWLRECL-DNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNI 131
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKL 119
++N Q+ +G + LH AA K DI ++L+ R L N KK +A + K
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKK 191
Query: 120 LIKHQIDVNAQDIEA 134
+ E
Sbjct: 192 KQGTDAVRTLSNAED 206
Score = 106 bits (268), Expect = 4e-30
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 3/115 (2%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
GS+ L++A DI ++L L NK+ T LH AA +GY D+ +LL+
Sbjct: 106 GSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR 165
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVD 115
+ ++I A + K ++ +L N + E H
Sbjct: 166 TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220
Score = 100 bits (250), Expect = 2e-27
Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 10/132 (7%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G + A + L M T +G + + V
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG-----RTGLIPSNYV 66
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKLL 120
Q +PLH AAK+ L + + NR + K T L+ A GH D+ ++L
Sbjct: 67 AEQAESIDNPLHEAAKRGNLSWLRECL-DNRVGVNGLDKAGSTALYWACHGGHKDIVEML 125
Query: 121 IKHQ-IDVNAQD 131
I++N Q+
Sbjct: 126 FTQPNIELNQQN 137
Score = 92.7 bits (231), Expect = 1e-24
Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 4/99 (4%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
K + + A L + D+ + + K + + I SN
Sbjct: 9 VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGL----IPSN 64
Query: 93 RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+ + + PLH AA+ G++ + + +++ VN D
Sbjct: 65 YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD 103
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 128 bits (325), Expect = 3e-37
Identities = 24/148 (16%), Positives = 54/148 (36%), Gaps = 20/148 (13%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCS------LENKMKKTPLHLAAQEGYVDMCKLLIK 57
+PL A + + +++++ NK + LH A + D+ ++
Sbjct: 173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE 232
Query: 58 HQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSL--------------ENKMKKT 103
IDVN +D + PL+ + + + + K L++ L + +
Sbjct: 233 MGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLD 292
Query: 104 PLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+ AA ++ +LL + +V
Sbjct: 293 FVPAAADPSKQEVLQLLQEKLDEVVRSL 320
Score = 124 bits (315), Expect = 8e-36
Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 13/137 (9%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEG--YVDMCKLLIKHQI 60
G P + ++ ++ +I + +T LH G Y++M K+L++
Sbjct: 110 RGQMPESLLNECDEREVNEIGSHVK-----HCKGQTALHWCVGLGPEYLEMIKILVQLGA 164
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCS------LENKMKKTPLHLAAQEGHV 114
A+D +PL A + + +++++ NK + LH A
Sbjct: 165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE 224
Query: 115 DMCKLLIKHQIDVNAQD 131
D+ ++ IDVN +D
Sbjct: 225 DVAMRFVEMGIDVNMED 241
Score = 120 bits (304), Expect = 3e-34
Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 19/146 (13%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQ-- 59
G+S LH+A N D+A + + + PL+L+ + V + K L++
Sbjct: 211 GNSHLHWAILINWEDVAMRFV-EMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDV 269
Query: 60 -----------IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLH 106
V +V + AA +K ++ ++L +
Sbjct: 270 FLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ-EKLDEVVRSLNTGAGGAV 328
Query: 107 LAAQEGHVDMCKLLIKHQIDVNAQDI 132
++ + ++ + V +
Sbjct: 329 KRKKKAAPAVKRMKLAPSAPVRTRSR 354
Score = 112 bits (282), Expect = 7e-31
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 16/132 (12%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
+H AA+K + D + LI S N+ T LHLA + G VD K L
Sbjct: 20 NMEKIHVAARKGQTDEVRRLI-ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV 78
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
+ G P+H A NK D+ L+E + + P L + ++ +
Sbjct: 79 HSLWH--GQKPIHLAVMANKTDLVVALVEGA-----KERGQMPESLLNECDEREVNE--- 128
Query: 122 KHQIDVNAQDIE 133
I + + +
Sbjct: 129 ---IGSHVKHCK 137
Score = 107 bits (269), Expect = 5e-29
Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 21/137 (15%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
G P+H A NK D+ L+E + + P L + ++ + I +
Sbjct: 84 GQKPIHLAVMANKTDLVVALVEGA-----KERGQMPESLLNECDEREVNE------IGSH 132
Query: 64 AQDIVGSSPLHYAAKKNK--LDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKL 119
+ G + LH+ L++ KIL+ S K K +TPL A + + + L
Sbjct: 133 VKHCKGQTALHWCVGLGPEYLEMIKILV-QLGASPTAKDKADETPLMRAMEFRNREALDL 191
Query: 120 LI-----KHQIDVNAQD 131
++ K + ++ +
Sbjct: 192 MMDTVPSKSSLRLDYAN 208
Score = 99.6 bits (249), Expect = 3e-26
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Query: 32 ENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES 91
+ +H+AA++G D + LI+ + Q+ G + LH A K +D AK L S
Sbjct: 16 SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLA-S 74
Query: 92 NRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
+ P+HLA D+ L++ +
Sbjct: 75 VGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERG 111
Score = 96.9 bits (242), Expect = 3e-25
Identities = 13/123 (10%), Positives = 39/123 (31%), Gaps = 21/123 (17%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSL--------------ENKMKKTPLHLAAQEGYV 49
+ PL+ + + + + K L++ L + + + AA
Sbjct: 244 HTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQ 303
Query: 50 DMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPL 105
++ +LL + +V G+ KK + ++ + ++ +
Sbjct: 304 EVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRT---RSRSRARSS 360
Query: 106 HLA 108
++
Sbjct: 361 AVS 363
Score = 80.3 bits (199), Expect = 5e-19
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 53 KLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQ 110
+ +++ D +H AA+K + D + LI S N+ T LHLA +
Sbjct: 4 SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLI-ETGVSPTIQNRFGCTALHLACK 62
Query: 111 EGHVDMCKLLIKHQIDVNAQD 131
G VD K L +
Sbjct: 63 FGCVDTAKYLASVGEVHSLWH 83
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 125 bits (316), Expect = 7e-37
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 11/134 (8%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
SP+H AA + LI S ++ +PLH A G++ K+L+KH
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLI-SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMC 117
VN +PL A D +L++ +P+H AA+ GHV+
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ----PESDLASPIHEAARRGHVECV 117
Query: 118 KLLIKHQIDVNAQD 131
LI + +++ +
Sbjct: 118 NSLIAYGGNIDHKI 131
Score = 125 bits (316), Expect = 7e-37
Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
+PL A D +L++ +P+H AA+ G+V+ LI +
Sbjct: 69 WHTPLFNACVSGSWDCVNLLLQHGASVQ----PESDLASPIHEAARRGHVECVNSLIAYG 124
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVD 115
+++ + +PL+ A + + K L+ES N+ K + +PLH A+ +
Sbjct: 125 GNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ----GKGQDSPLHAVARTASEE 180
Query: 116 MCKLLIKHQIDVNAQD 131
+ LL+ D A++
Sbjct: 181 LACLLMDFGADTQAKN 196
Score = 118 bits (299), Expect = 3e-34
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
+SP+H AA++ ++ LI + ++++K+ TPL+LA + K L++ D
Sbjct: 101 LASPIHEAARRGHVECVNSLI-AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 159
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
VN Q SPLH A+ ++A +L+ + N K P+ L E + +L
Sbjct: 160 VN-QGKGQDSPLHAVARTASEELACLLM-DFGADTQAKNAEGKRPVELVPPESPL--AQL 215
Query: 120 LIKHQIDVNAQDI 132
++ + + +
Sbjct: 216 FLEREGPPSLMQL 228
Score = 113 bits (286), Expect = 2e-32
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 11/125 (8%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
+PL+ A + + K L+ES N+ K + +PLH A+ ++ LL+
Sbjct: 134 LGTPLYLACENQQRACVKKLLESGADVNQ----GKGQDSPLHAVARTASEELACLLMDFG 189
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCK 118
D A++ G P+ ++ +A++ +E SL + + H + K
Sbjct: 190 ADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITK 247
Query: 119 LLIKH 123
L++
Sbjct: 248 LVLPE 252
Score = 71.3 bits (176), Expect = 4e-16
Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 32/97 (32%)
Query: 37 KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSL 96
+P+H AA G+ + LI VN
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADH--------------------------- 36
Query: 97 ENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
+PLH A GH+ K+L+KH VN +
Sbjct: 37 -----VSPLHEACLGGHLSCVKILLKHGAQVNGVTAD 68
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 124 bits (314), Expect = 8e-37
Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 25/153 (16%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE--------------SNRCSLENKMKKTPLHLAAQEGYV 49
G + LH A +++ + L+ R + PL AA G
Sbjct: 75 GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE 134
Query: 50 DMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIA----KILI-------ESNRCSLEN 98
++ +LLI+H D+ AQD +G++ LH + A +L+ + + N
Sbjct: 135 EIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPN 194
Query: 99 KMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
TP LA EG++ M + L++ + + A
Sbjct: 195 NQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAH 227
Score = 115 bits (291), Expect = 2e-33
Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 21/150 (14%)
Query: 3 VGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
+ SPL AAK+N + L++ C + M +T LH+AA ++ +L++
Sbjct: 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61
Query: 61 DV-----NAQDIVGSSPLHYAAKKNKLDIAKILIE--------------SNRCSLENKMK 101
++ ++ G + LH A +++ + L+ R
Sbjct: 62 ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG 121
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+ PL AA G ++ +LLI+H D+ AQD
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQD 151
Score = 110 bits (277), Expect = 2e-31
Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 30/158 (18%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE------SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIK 57
G + LH AA + L+ A +L+E + E +T LH+A V++ + L+
Sbjct: 37 GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Query: 58 HQIDVNAQDI-------------VGSSPLHYAAKKNKLDIAKILIES----NRCSLENKM 100
V+A+ G PL +AA +I ++LIE ++ +
Sbjct: 97 RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA---QDSL 153
Query: 101 KKTPLHLAAQEGHVD----MCKLLIKHQIDVNAQDIEA 134
T LH+ + + M LL+ + + + +E
Sbjct: 154 GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLEL 191
Score = 102 bits (257), Expect = 2e-28
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 37 KTPLHLAAQEGYVD-MCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE----- 90
++PL LAA+E V + KLL +V+ + +G + LH AA + L+ A +L+E
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 91 -SNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
+ E +T LH+A +V++ + L+ V+A+
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATG 107
Score = 62.6 bits (153), Expect = 4e-13
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 11/77 (14%)
Query: 4 GSSPLHYAAKKNKLDIA----KILI-------ESNRCSLENKMKKTPLHLAAQEGYVDMC 52
G++ LH + A +L+ + + N TP LA EG + M
Sbjct: 154 GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMF 213
Query: 53 KLLIKHQIDVNAQDIVG 69
+ L++ + + A
Sbjct: 214 QHLMQKRKHIAAAHHHH 230
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 124 bits (315), Expect = 2e-36
Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 3/128 (2%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
G S +YA N + + L+ + + PLH AA + K+L+ +D +
Sbjct: 31 GHSASYYAIADNNVRLVCTLL-NAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDS 89
Query: 64 AQDIVGSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
D G++ L+YA + K+ ++ KT + A V + +
Sbjct: 90 QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL 149
Query: 122 KHQIDVNA 129
Sbjct: 150 SEIPSTFD 157
Score = 119 bits (301), Expect = 2e-34
Identities = 16/131 (12%), Positives = 49/131 (37%), Gaps = 7/131 (5%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
+ ++A N + I + + + + + +H+ + G+VDM LL+ + N
Sbjct: 129 WKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTN 188
Query: 64 AQDIVGSSP-LHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIK 122
+ + P + A +++ + L ++ + ++ K++I+
Sbjct: 189 TNNSLLFIPDIKLAIDNKDIEMLQALF-KYDINIY-----SANLENVLLDDAEIAKMIIE 242
Query: 123 HQIDVNAQDIE 133
++ +
Sbjct: 243 KHVEYKSDSYT 253
Score = 118 bits (299), Expect = 5e-34
Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 7/136 (5%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G++ L+YA + K+ ++ KT + A V + + I
Sbjct: 95 GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IP 153
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTP-LHLAAQEGHVDMCK 118
+ S +H K +D+ +L+ S N + P + LA ++M +
Sbjct: 154 STFDLAILLSCIHITIKNGHVDMMILLL-DYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212
Query: 119 LLIKHQIDVNAQDIEA 134
L K+ I++ + ++E
Sbjct: 213 ALFKYDINIYSANLEN 228
Score = 107 bits (271), Expect = 7e-30
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 6/126 (4%)
Query: 8 LHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDI 67
L + L + + + + A + V + L+ N +
Sbjct: 4 LSRINTWKSKQLKSFLSSKD-TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE- 61
Query: 68 VGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKLLIKHQI 125
PLH AA I KIL+ + + T L+ A G++ KL +K
Sbjct: 62 -NEFPLHQAATLEDTKIVKILL-FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW 119
Query: 126 DVNAQD 131
+
Sbjct: 120 RLMFYG 125
Score = 72.9 bits (180), Expect = 9e-17
Identities = 7/94 (7%), Positives = 29/94 (30%), Gaps = 8/94 (8%)
Query: 7 PLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQD 66
+ A +++ + L ++ + ++ K++I+ ++ +
Sbjct: 198 DIKLAIDNKDIEMLQALF-KYDINIY-----SANLENVLLDDAEIAKMIIEKHVEYKSDS 251
Query: 67 IVGSSPLHYAAKKNKLDIAKILIE--SNRCSLEN 98
+ K +++ + C +N
Sbjct: 252 YTKDLDIVKNNKLDEIISKNKELRLMYVNCVKKN 285
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 120 bits (304), Expect = 4e-36
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
+ L AA + L+ L+ N ++ + +T L + G ++ + L+ +
Sbjct: 5 WGNELASAAARGDLEQLTSLL-QNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN 62
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
+ +D G + +H AA+ LD + L+ + + + PLHLAA+EGH+ + +
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 120 LIKH-QIDVNAQD 131
L+KH +V ++
Sbjct: 122 LVKHTASNVGHRN 134
Score = 117 bits (297), Expect = 5e-35
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
G + L N +IA+ L+ + +++ +H AA+ G++D + L++ Q
Sbjct: 38 GRTALQVMKLGNP-EIARRLLLRGANPDL---KDRTGFAVIHDAARAGFLDTLQTLLEFQ 93
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMC 117
DVN +D G+ PLH AAK+ L + + L++ ++ N T LA G ++
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Query: 118 KLLIKH 123
L+ +
Sbjct: 154 SLMQAN 159
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 121 bits (305), Expect = 5e-36
Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 2/131 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
+P AA+K L+E ++ +T L A G +LL + D++
Sbjct: 44 YETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 103
Query: 64 AQDI-VGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
+D+ G + LH AA + ++ + L+E +E++ T L LA + +
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 163
Query: 122 KHQIDVNAQDI 132
+ + + +
Sbjct: 164 QFGRRIGLEKV 174
Score = 116 bits (294), Expect = 2e-34
Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 5/130 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
G+ K + +TP AA++ L+ DV+
Sbjct: 14 GAMEYLIEWKDGHSPSWVPSSYIA--ADVVSEYETPWWTAARKADEQALSQLL-EDRDVD 70
Query: 64 AQDIVGSSPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
A D G + L + A ++L E+ + + + T LH+AA ++ + L+
Sbjct: 71 AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 130
Query: 122 KHQIDVNAQD 131
+ D+ +D
Sbjct: 131 ELGADIEVED 140
Score = 96.0 bits (240), Expect = 2e-26
Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 18/122 (14%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G + L + A ++L E+ + + + T LH+AA ++ + L++ D
Sbjct: 76 GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD 135
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
+ +D G + L A + K + + G + +L
Sbjct: 136 IEVEDERGLTALELAREILKTTPKGNPM----------------QFGRRIGLEKVINVLE 179
Query: 122 KH 123
Sbjct: 180 GQ 181
Score = 92.6 bits (231), Expect = 7e-25
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 3/96 (3%)
Query: 38 TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE 97
+ ++G+ DV ++ +P AA+K L+E
Sbjct: 16 MEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLLEDRDVDAV 72
Query: 98 NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
++ +T L A G +LL + D++ +D+
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR 108
Score = 60.2 bits (147), Expect = 2e-12
Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 3/72 (4%)
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKL 119
I + G+ K + +TP AA++
Sbjct: 5 IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIA--ADVVSEYETPWWTAARKADEQALSQ 62
Query: 120 LIKHQIDVNAQD 131
L+ DV+A D
Sbjct: 63 LL-EDRDVDAVD 73
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 124 bits (313), Expect = 2e-35
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 4/131 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
L A N+ + +L N C + K TPLHLAA V + +LL++H DV
Sbjct: 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV 84
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKLL 120
+A+D G PLH A ++ ++L+ + + + + TPLH AA + V++C LL
Sbjct: 85 HAKDKGGLVPLHNACSYGHYEVTELLL-KHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143
Query: 121 IKHQIDVNAQD 131
+ H D +
Sbjct: 144 LSHGADPTLVN 154
Score = 110 bits (278), Expect = 2e-30
Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 12/136 (8%)
Query: 4 GSSPLHYAAKK---NKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKH 58
+ LH A + +A++L+ ++ K K TPLH+AA+ + D+ ++L KH
Sbjct: 211 HETALHCAVASLHPKRKQVAELLL-RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH 269
Query: 59 QIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMC 117
+NA D +G + LH AA L ++L+ S+ + T + +
Sbjct: 270 GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAV 324
Query: 118 KLLIKHQIDVNAQDIE 133
+ ++ + D++
Sbjct: 325 QQILSESTPMRTSDVD 340
Score = 109 bits (276), Expect = 4e-30
Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 14/130 (10%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G PLH A ++ ++L+ + + + + TPLH AA + V++C LL+ H D
Sbjct: 91 GLVPLHNACSYGHYEVTELLL-KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD 149
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
+ G S + A + + + L AA+E + K +
Sbjct: 150 PTLVNCHGKSAVDMAPTPELRERLTYEFK----------GHSLLQ-AAREADLAKVKKTL 198
Query: 122 KHQIDVNAQD 131
+I Q
Sbjct: 199 ALEIINFKQP 208
Score = 104 bits (262), Expect = 4e-28
Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 17/133 (12%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
G S + A + + + L A + + K L I
Sbjct: 157 GKSAVDMAPTPELRERLTYEFK----------GHSLLQAAREADLAKVKKTLALE-IINF 205
Query: 64 AQDIVGSSPLHYAAKK---NKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCK 118
Q + LH A + +A++L+ ++ K K TPLH+AA+ H D+ +
Sbjct: 206 KQPQSHETALHCAVASLHPKRKQVAELLL-RKGANVNEKNKDFMTPLHVAAERAHNDVME 264
Query: 119 LLIKHQIDVNAQD 131
+L KH +NA D
Sbjct: 265 VLHKHGAKMNALD 277
Score = 103 bits (260), Expect = 8e-28
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Query: 19 IAKILIESN-RCSLENKMKKTPLHLAAQEG-YVDMCKLLIKHQIDVNAQDIVGSSPLHYA 76
A L + + + L + KK L AA+ G + LL ++ +A D S+PLH A
Sbjct: 6 SALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA 65
Query: 77 AKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
A N++ I ++L+ + + K K PLH A GH ++ +LL+KH VNA D
Sbjct: 66 AGYNRVRIVQLLL-QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD 121
Score = 94.5 bits (236), Expect = 2e-24
Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 13/113 (11%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
+PLH AA++ D+ ++L + N + + +T LH AA G++ C+LL+ +
Sbjct: 247 FMTPLHVAAERAHNDVMEVLHKHGAKMNAL---DSLGQTALHRAALAGHLQTCRLLLSYG 303
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEG 112
D + + G + + + ++ S + L A++ G
Sbjct: 304 SDPSIISLQGFTAAQMGN-----EAVQQIL-SESTPMRTSDVDYRLLEASKAG 350
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 117 bits (297), Expect = 2e-35
Identities = 38/126 (30%), Positives = 70/126 (55%), Gaps = 10/126 (7%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
L AA+ + D +IL+ +N + ++ TPL+LA G++++ ++L+K+ D
Sbjct: 14 LGKKLLEAARAGQDDEVRILM-ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMC 117
VNA D +G +PLH AA L+IA++L++ N ++K KT ++ G+ D+
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNA---QDKFGKTAFDISIGNGNEDLA 129
Query: 118 KLLIKH 123
++L K
Sbjct: 130 EILQKL 135
Score = 102 bits (258), Expect = 2e-29
Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 38 TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE 97
L AA+ G D ++L+ + DVNA+D G +PL+ A L+I ++L+ N +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL-KNGADVN 74
Query: 98 --NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+ + TPLHLAA GH+++ ++L+KH DVNAQD
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD 110
Score = 95.1 bits (238), Expect = 2e-26
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G +PL+ A L+I ++L+ N + + + TPLHLAA G++++ ++L+KH D
Sbjct: 47 GLTPLYLATAHGHLEIVEVLL-KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD 105
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
VNAQD G + + D+A+IL + N
Sbjct: 106 VNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 118 bits (298), Expect = 3e-35
Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
+ L AA + +++ + L+ + N + P+ + G + +LL+ H +
Sbjct: 12 SADWLATAAARGRVEEVRALL-EAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAE 69
Query: 62 VNAQDIVGS-SPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKL 119
N D P+H AA++ LD +L + R + + + P+ LA + GH D+ +
Sbjct: 70 PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 129
Query: 120 LIKHQIDVNAQD 131
L +
Sbjct: 130 LRAAAGGTRGSN 141
Score = 102 bits (256), Expect = 5e-29
Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 9/115 (7%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK---TPLHLAAQEGYVDMCKLLIKHQI 60
G P+ +A++L+ + P+H AA+EG++D +L +
Sbjct: 45 GRRPIQVMMM-GSARVAELLL-LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA 102
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVD 115
++ +D G P+ A + D+A+ L + + A EG D
Sbjct: 103 RLDVRDAWGRLPVDLAEELGHRDVARYLRAAA----GGTRGSNHARIDAAEGPSD 153
Score = 97.5 bits (244), Expect = 4e-27
Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 5/103 (4%)
Query: 32 ENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES 91
+ L AA G V+ + L++ + NA + G P+ +A++L+
Sbjct: 8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLL-L 65
Query: 92 NRCSLENKMKK---TPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+ P+H AA+EG +D +L + ++ +D
Sbjct: 66 HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD 108
Score = 76.0 bits (188), Expect = 1e-18
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 6 SPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA 64
P+H AA++ LD +L + R + + + P+ LA + G+ D+ + L
Sbjct: 80 RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG 139
Query: 65 QDIVGSSPLHYAAKKNKLDIA 85
+ A + DI
Sbjct: 140 SN-----HARIDAAEGPSDIP 155
Score = 66.0 bits (162), Expect = 6e-15
Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 56 IKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGH 113
++ + + + L AA + +++ + L+ + N + P+ + G
Sbjct: 1 MEPAAGSSMEP--SADWLATAAARGRVEEVRALL-EAGANPNAPNSYGRRPIQVMMM-GS 56
Query: 114 VDMCKLLIKHQIDVNAQD 131
+ +LL+ H + N D
Sbjct: 57 ARVAELLLLHGAEPNCAD 74
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 120 bits (304), Expect = 9e-35
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 6/133 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
+P ++ N + + E R LE N TPLH+A +M +LL D
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183
Query: 62 VNAQDI-VGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCK 118
+N + G +PLH A + + ++L+ +M +TPL A + + +
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLL-KAGADPTARMYGGRTPLGSALLRPNPILAR 242
Query: 119 LLIKHQIDVNAQD 131
LL H
Sbjct: 243 LLRAHGAPEPEDG 255
Score = 119 bits (300), Expect = 3e-34
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 7/125 (5%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
G +PLH A ++ ++L ++ N+ E +TPLHLA + + +LL+K
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKP--EPTCGRTPLHLAVEAQAASVLELLLKAG 215
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCK 118
D A+ G +PL A + +A++L + K +P + + D
Sbjct: 216 ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRD 275
Query: 119 LLIKH 123
++
Sbjct: 276 EGDEY 280
Score = 118 bits (297), Expect = 9e-34
Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 21/147 (14%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE--------------SNRCSLENKMKKTPLHLAAQE-GY 48
G + LH A + A +L++ + P + +Q
Sbjct: 78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE 137
Query: 49 VDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTP 104
+ ++ + A++ G +PLH A ++ ++L ++ N+ E +TP
Sbjct: 138 NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP--EPTCGRTP 195
Query: 105 LHLAAQEGHVDMCKLLIKHQIDVNAQD 131
LHLA + + +LL+K D A+
Sbjct: 196 LHLAVEAQAASVLELLLKAGADPTARM 222
Score = 117 bits (295), Expect = 2e-33
Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 19/149 (12%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE----SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
G + LH A L+ L+N + +T LHLAA G + L
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIE--------------SNRCSLENKMKKTPL 105
V + G + LH A + A +L++ + P
Sbjct: 69 AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 106 HLAAQE-GHVDMCKLLIKHQIDVNAQDIE 133
+ +Q + ++ + A++ +
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYD 157
Score = 108 bits (272), Expect = 4e-30
Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 22/149 (14%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
G + LH AA + + L + + T LHLA + +L++ +
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVA---ERGGHTALHLACRVRAHTCACVLLQPR 101
Query: 60 IDVNAQDI-------------VGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTP 104
+P ++ N + + E R LE N TP
Sbjct: 102 PSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161
Query: 105 LHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
LH+A +M +LL D+N +
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPT 190
Score = 99.2 bits (248), Expect = 1e-26
Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 10/108 (9%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLIKH---QIDVNAQDIVGSSPLHYAAKKNKLDIAKILI 89
+ T LHLA + L+ ++ Q+ +G + LH AA + + L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 90 ES----NRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
+ + T LHLA + +L++ + +
Sbjct: 66 AAGAGVLVA---ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD 110
Score = 73.0 bits (180), Expect = 1e-16
Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIE----SNRCSLENKMKKTPLHLAAQEGHVDMC 117
G + LH A L+ L+N + +T LHLAA G
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 118 KLLIKHQIDVNAQD 131
+ L V +
Sbjct: 62 EKLYAAGAGVLVAE 75
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 117 bits (297), Expect = 1e-33
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 11/138 (7%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
+ A + L+E N N T LH A + VDM K L+++
Sbjct: 40 DGAVFLAACSSGDTEEVLRLLERGADINYA---NVDGLTALHQACIDDNVDMVKFLVENG 96
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMC 117
++N D G PLH AA LDIA+ LI S + N TPL +A +E ++
Sbjct: 97 ANINQPDNEGWIPLHAAASCGYLDIAEYLI-SQGAHVGAVNSEGDTPLDIAEEEAMEELL 155
Query: 118 KLLI-KHQIDVNAQDIEA 134
+ + + +D+ A E
Sbjct: 156 QNEVNRQGVDIEAARKEE 173
Score = 113 bits (285), Expect = 8e-32
Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 9/133 (6%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK-TPLHLAAQEGYVDMCKLLIKHQIDV 62
+ + R + K A G + L++ D+
Sbjct: 8 QKRNEQLKRWIGSETDLEPPV-VKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI 66
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMCK 118
N ++ G + LH A + +D+ K L+E+ N+ + PLH AA G++D+ +
Sbjct: 67 NYANVDGLTALHQACIDDNVDMVKFLVENGANINQP---DNEGWIPLHAAASCGYLDIAE 123
Query: 119 LLIKHQIDVNAQD 131
LI V A +
Sbjct: 124 YLISQGAHVGAVN 136
Score = 111 bits (281), Expect = 3e-31
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
+ + D + L S + K T LH+AA +GY ++ KLLI+ + D
Sbjct: 166 IEAARKEEERIMLRDARQWLN-SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
VN +D G +PLH AA K + +IL+ N C +E NK+ +T +A ++ + +L
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILV-ENLCDMEAVNKVGQTAFDVADEDILGYLEEL 283
Query: 120 LIKHQIDVNAQD 131
K + + +
Sbjct: 284 QKKQNLLHSEKR 295
Score = 106 bits (267), Expect = 3e-29
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLI-KHQI 60
G PLH AA LDIA+ LI S + N TPL +A +E ++ + + + +
Sbjct: 106 GWIPLHAAASCGYLDIAEYLI-SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV 164
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCK 118
D+ A + D + L S + K T LH+AA +G+ ++ K
Sbjct: 165 DIEA-------ARKEEERIMLRDARQWLN-SGHINDVRHAKSGGTALHVAAAKGYTEVLK 216
Query: 119 LLIKHQIDVNAQD 131
LLI+ + DVN +D
Sbjct: 217 LLIQARYDVNIKD 229
Score = 93.7 bits (234), Expect = 2e-24
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 8/107 (7%)
Query: 31 LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE 90
+ + +K L G + + + + + A + L+E
Sbjct: 3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF-DDGAVFLAACSSGDTEEVLRLLE 61
Query: 91 S----NRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
N N T LH A + +VDM K L+++ ++N D E
Sbjct: 62 RGADINYA---NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Score = 56.7 bits (138), Expect = 1e-10
Identities = 8/71 (11%), Positives = 17/71 (23%), Gaps = 2/71 (2%)
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK-TPLHLAAQEGHVDMCKLL 120
+ D + + R + K A G + L
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPV-VKRKKTKVKFDDGAVFLAACSSGDTEEVLRL 59
Query: 121 IKHQIDVNAQD 131
++ D+N +
Sbjct: 60 LERGADINYAN 70
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 112 bits (284), Expect = 2e-33
Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
+ L AA + +++ + L+E+ N N+ + P+ + G + +LL+ H
Sbjct: 12 SDAGLATAAARGQVETVRQLLEAGADPNAL---NRFGRRPIQVMMM-GSAQVAELLLLHG 67
Query: 60 IDVNAQDIVGS-SPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMC 117
+ N D P+H AA++ LD +L + R + + + P+ LA ++GH D+
Sbjct: 68 AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIA 127
Query: 118 KLLIKH 123
+ L
Sbjct: 128 RYLHAA 133
Score = 99.8 bits (250), Expect = 3e-28
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
L AA G V+ + L++ D NA + G P+ +A++L+ +
Sbjct: 9 GGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLL-LH 66
Query: 93 RCSLENKMKK---TPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
P+H AA+EG +D +L + ++ D
Sbjct: 67 GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCD 108
Score = 72.1 bits (178), Expect = 2e-17
Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDM 116
++ + L AA + +++ + L+E+ N N+ + P+ + G +
Sbjct: 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNAL---NRFGRRPIQVMMM-GSAQV 59
Query: 117 CKLLIKHQIDVNAQD 131
+LL+ H + N D
Sbjct: 60 AELLLLHGAEPNCAD 74
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 118 bits (299), Expect = 2e-33
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 17/145 (11%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRC--SLENKMK--KTPLHLAAQEGY---VDMCKLLI 56
S LH AA + ++ S + +E + T L + A V KLL+
Sbjct: 199 ERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLV 258
Query: 57 KHQIDVN--------AQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLH 106
+ V+ ++ G + LHYAA+ + + I K L+ + + ++ KTP+
Sbjct: 259 EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM 318
Query: 107 LAAQEGHVDMCKLLIKHQIDVNAQD 131
LAAQEG +++ LI+ V A D
Sbjct: 319 LAAQEGRIEVVMYLIQQGASVEAVD 343
Score = 115 bits (290), Expect = 4e-32
Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 16/144 (11%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSL---------ENKMKKTPLHLAAQEGYVDMCKL 54
+ LH+ A + + ++ LI + + TPL LA +
Sbjct: 125 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY 184
Query: 55 LIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC--SLENKMK--KTPLHLAAQ 110
L+K D + S LH AA + ++ S + +E + T L + A
Sbjct: 185 LMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH 244
Query: 111 EGH---VDMCKLLIKHQIDVNAQD 131
V KLL++ V+
Sbjct: 245 NEGRDQVASAKLLVEKGAKVDYDG 268
Score = 113 bits (284), Expect = 3e-31
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 4 GSSPLHYAAKKNKLD---IAKILIE---------SNRCSLENKMKKTPLHLAAQEGYVDM 51
G + L A D AK+L+E + R E +T LH AAQ + +
Sbjct: 235 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI 294
Query: 52 CKLLIKHQ-IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLA 108
K L+ + + + QD G +P+ AA++ ++++ LI S+E + T LA
Sbjct: 295 VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI-QQGASVEAVDATDHTARQLA 353
Query: 109 AQEGHVDMCKLLIKHQIDV 127
H ++ + + + +
Sbjct: 354 QANNHHNIVDIFDRCRPER 372
Score = 94.6 bits (236), Expect = 2e-24
Identities = 20/136 (14%), Positives = 38/136 (27%), Gaps = 17/136 (12%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
L A+ + + ++ P G + +
Sbjct: 37 SQHSLLEASYDGYIKRQRNELQHY--------SLYPNPQGYGNGNDFLGDFNHTNLQIPT 88
Query: 64 AQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKH 123
+ LH A I + + + ++ + +T LH A + + LI H
Sbjct: 89 EPEPESPIKLHTEA-AGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVH 147
Query: 124 QI--------DVNAQD 131
+ DVNA D
Sbjct: 148 EAKECIAAGADVNAMD 163
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 115 bits (289), Expect = 4e-33
Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 11/136 (8%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
L AA +L++ + ++ ++ N+ T LH A + LI
Sbjct: 21 PLVLLLDAALTGELEVVQQAVKEMNDPSQP---NEEGITALHNAICGANYSIVDFLITAG 77
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAA--QEGHVD 115
+VN+ D G +PLH AA N I L++ + T +EG+ D
Sbjct: 78 ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYAD 137
Query: 116 MCKLLIKHQIDVNAQD 131
L + + +
Sbjct: 138 CATYLADVEQSMGLMN 153
Score = 100 bits (251), Expect = 1e-27
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 7/101 (6%)
Query: 37 KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES----N 92
L AA G +++ + +K D + + G + LH A I LI + N
Sbjct: 22 LVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVN 81
Query: 93 RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
+ TPLH AA +C L++H + A +
Sbjct: 82 SP---DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS 119
Score = 86.5 bits (215), Expect = 4e-22
Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 6/118 (5%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAA--QEGYVDMCKLLIKHQ 59
G +PLH AA N I L++ + T +EGY D L +
Sbjct: 87 GWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVE 146
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDM 116
+ + L + + D + + ++T AA G
Sbjct: 147 QSMGLMNSGAVYALWDYSAEF-GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGY 203
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 110 bits (277), Expect = 2e-32
Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 10/121 (8%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK--TPLHLAAQEGYVDMCKLLIKHQID 61
+A K LD K + + + ++ PLH AA G +++ + L+ D
Sbjct: 7 CDKEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMC 117
+NA D +PL A + + K+L+ T + +
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK---GPDGLTAFEATDNQAIKALL 122
Query: 118 K 118
+
Sbjct: 123 Q 123
Score = 106 bits (268), Expect = 4e-31
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
M A + G +D K + DVN G PLHYAA +L+I + L+
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LK 62
Query: 93 RCSLENKMK--KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+ K TPL A EGHV KLL+ D +
Sbjct: 63 GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 103
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 108 bits (273), Expect = 5e-32
Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 31 LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE 90
+K TPLH AA+ G+ + K L+ DVNA+ G++PLH AAK +I K+L+
Sbjct: 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL- 62
Query: 91 SNRCSLENKMK--KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+ + + K TP HLA + GH ++ KLL DVNA+
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 100 bits (251), Expect = 9e-29
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
G++PLH AAK + K L+ S + + K TPLHLAA+ G+ ++ KLL+ D
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLH 106
VNA+ G++P H A K +I K+L N + H
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR---SWGSSHHHH 113
Score = 79.0 bits (196), Expect = 2e-20
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
G++PLH AAK +I K+L+ + + + K TP HLA + G+ ++ KLL D
Sbjct: 42 GNTPLHLAAKNGHAEIVKLLL-AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Query: 62 VNAQDIVGSSPLHY 75
VNA+ S H+
Sbjct: 101 VNARSWGSSHHHHH 114
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 111 bits (281), Expect = 9e-32
Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 27/157 (17%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK---TPLHLAAQEGYVDMCKLLIKHQI 60
G + L + A ++L L+++ + T LH+AA ++ + L++
Sbjct: 77 GRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA 135
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILI-----------------------ESNRCSLE 97
D+ +D G + L A + K + E + +
Sbjct: 136 DIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEK 195
Query: 98 NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA 134
K +L + D + H + A+D E
Sbjct: 196 RGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYED 232
Score = 89.6 bits (223), Expect = 3e-23
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 3/96 (3%)
Query: 38 TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE 97
+ ++G+ DV ++ +P AA+K L+E
Sbjct: 17 MEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLLEDRDVDAV 73
Query: 98 NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
++ +T L A G +LL + D++ +D+
Sbjct: 74 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR 109
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 106 bits (267), Expect = 2e-30
Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 15/143 (10%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVD------MCKLLI 56
L + + I+ LI K T Q G D +CK+ +
Sbjct: 42 LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFL 101
Query: 57 KHQIDVNAQDIVGSSPLHYAAKKNKLD------IAKILIESNRCSLE--NKMKKTPLHLA 108
+ D+ A + +D + K++ + L +K T L
Sbjct: 102 EKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV 161
Query: 109 AQEGHVDMCKLLIKHQIDVNAQD 131
+ K++ + N ++
Sbjct: 162 KRCQKPIALKMMEDYIKKYNLKE 184
Score = 93.6 bits (233), Expect = 3e-25
Identities = 22/147 (14%), Positives = 42/147 (28%), Gaps = 24/147 (16%)
Query: 6 SPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLA----AQEGYVDMCKLLIKHQID 61
+ AA + L E E+ +K L+ E + LI D
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67
Query: 62 VNAQDIVGSSPLHYAAKKNKLDI------AKILIES----NRCSLENKMKKTPLHLAAQE 111
+ ++ G++ + DI KI +E K K +
Sbjct: 68 IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITAL---YKPYKIVVFKNIFN 124
Query: 112 GHVDMCK-------LLIKHQIDVNAQD 131
VD + + + + + +D
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLLIKD 151
Score = 32.7 bits (75), Expect = 0.016
Identities = 4/31 (12%), Positives = 9/31 (29%)
Query: 101 KKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+ + AA G + L + +
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESV 36
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 107 bits (268), Expect = 4e-30
Identities = 30/131 (22%), Positives = 63/131 (48%), Gaps = 4/131 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
+ A ++ + ++ +++ ++ +T LH A G+ ++ + L++ +
Sbjct: 7 NIMICNLAYSGKLDELKERIL-ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLL 120
VN +D G SPLH AA +I K L+ + N+ TPLH AA + ++ +L
Sbjct: 66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 121 IKHQIDVNAQD 131
++ + +A+D
Sbjct: 126 LEGGANPDAKD 136
Score = 94.2 bits (234), Expect = 4e-25
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G SPLH AA +I K L+ + N+ TPLH AA + ++ +L++ +
Sbjct: 73 GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
+A+D ++ +H AA K L + IL+ ++++ TPLHLA E V+ K L+
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
Query: 122 KHQIDVNAQD 131
+ ++
Sbjct: 193 TQGASIYIEN 202
Score = 86.5 bits (214), Expect = 4e-22
Identities = 40/127 (31%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
G +PLHYAA KN+ +IA +L+E ++ T +H AA +G + M +L+ ++
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST 165
Query: 63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
N QD G++PLH A + +++ AK L+ +ENK +KTPL +A G + + +
Sbjct: 166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRL 223
Query: 122 KHQIDVN 128
+ +
Sbjct: 224 AEGEEAS 230
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 100 bits (253), Expect = 3e-29
Identities = 39/89 (43%), Positives = 62/89 (69%), Gaps = 3/89 (3%)
Query: 37 KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSL 96
+TPLHLAA+ G++++ KLL++ DVNA+D G +PLH AA+ L++ K+L+ +
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADV 61
Query: 97 ENKMK--KTPLHLAAQEGHVDMCKLLIKH 123
K K +TPLHLAA+ GH+++ KLL++
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 95.5 bits (239), Expect = 4e-27
Identities = 37/89 (41%), Positives = 59/89 (66%), Gaps = 3/89 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
G +PLH AA+ L++ K+L+ + K K +TPLHLAA+ G++++ KLL++ D
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIE 90
VNA+D G +PLH AA+ L++ K+L+E
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 58.5 bits (143), Expect = 1e-12
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKH 58
G +PLH AA+ L++ K+L+ + K K +TPLHLAA+ G++++ KLL++
Sbjct: 35 GRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 48.1 bits (116), Expect = 1e-08
Identities = 17/30 (56%), Positives = 25/30 (83%)
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+TPLHLAA+ GH+++ KLL++ DVNA+D
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKD 32
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 101 bits (253), Expect = 1e-27
Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 34/160 (21%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE--------------SNRCSLENKMKKTPLHLAAQEGYV 49
G S LH A +K L K+L+E + PL LAA
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149
Query: 50 DMCKLLIKH---QIDVNAQDIVGSSPLHY----------------AAKKNKLDIAKILIE 90
D+ L+++ + A D +G++ LH L + L
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 209
Query: 91 SN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNA 129
+ + N TPL LAA+EG +++ + +++ + A
Sbjct: 210 TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249
Score = 89.8 bits (223), Expect = 3e-23
Identities = 31/177 (17%), Positives = 54/177 (30%), Gaps = 48/177 (27%)
Query: 3 VGSSPLHYAA---KKNKLDIAKILIESNR------------CSLENKMKKTPLHLAAQEG 47
G + L A + L++ ++ C+ E + LH+A ++
Sbjct: 42 TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKR 101
Query: 48 YVDMCKLLIKHQIDVNAQDI-------------VGSSPLHYAAKKNKLDIAKILIE--SN 92
+ KLL+++ DV+ + G PL AA + D+ L+E
Sbjct: 102 SLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161
Query: 93 RCSLENKMK--KTPLHL----------------AAQEGHVDMCKLLIKHQIDVNAQD 131
SLE T LH +G + M L +
Sbjct: 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISN 218
Score = 66.7 bits (163), Expect = 2e-14
Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 23/120 (19%)
Query: 37 KTPLHLAAQEGYVDMCKLLIKHQI--------DVNAQDIVGSSPLHYAA---KKNKLDIA 85
+ L G + L+++ + G + L A +
Sbjct: 3 RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACI 62
Query: 86 KILIESNR------------CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
L++ ++ C+ E + LH+A ++ + KLL+++ DV+ +
Sbjct: 63 MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACG 122
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 101 bits (254), Expect = 1e-27
Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 35/160 (21%)
Query: 4 GSSPLHYAAKKNKLDIAKILIE---------------SNRCSLENKMKKTPLHLAAQEGY 48
G + LH A ++ + + +L+E + + PL LAA
Sbjct: 101 GQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160
Query: 49 VDMCKLLIKHQI---DVNAQDIVGSSPLHYAAKKNKLDI-----------------AKIL 88
+ + K L+++ D++A+D VG++ LH + + AK+
Sbjct: 161 LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLH 220
Query: 89 IESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
+ N+ TPL LAA G + + +++ +I
Sbjct: 221 PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP 260
Score = 87.9 bits (218), Expect = 2e-22
Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 42/172 (24%)
Query: 1 RQVGSSPLHYA---AKKNKLDIAKILIESNR------------CSLENKMKKTPLHLAAQ 45
+ G + L A + D +L++ R + +T LH+A +
Sbjct: 51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE 110
Query: 46 EGYVDMCKLLIKHQIDVNAQD--------------IVGSSPLHYAAKKNKLDIAKILIES 91
+ + LL+++ DV A G PL AA N+L I K L+++
Sbjct: 111 RRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN 170
Query: 92 NRCS----LENKMKKTPLHLAAQEGH---------VDMCKLLIKHQIDVNAQ 130
+ + + T LH + M ++ ++
Sbjct: 171 SWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPT 222
Score = 87.9 bits (218), Expect = 2e-22
Identities = 24/132 (18%), Positives = 41/132 (31%), Gaps = 26/132 (19%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCS----LENKMKKTPLHLAAQEGYVDM-------- 51
G PL AA N+L I K L++++ + + T LH + +
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207
Query: 52 --------CKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKT 103
L + G +PL AA K+ + +++ +
Sbjct: 208 MYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ------REIHEPE 261
Query: 104 PLHLAAQEGHVD 115
H AA H
Sbjct: 262 CRHAAAHHHHHH 273
Score = 77.9 bits (192), Expect = 1e-18
Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 23/123 (18%)
Query: 32 ENKMKKTPLHLAAQEGYVDMCKLL-------IKHQIDVNAQDI-VGSSPLHYA---AKKN 80
+ + A + + L K D +D G + L A
Sbjct: 9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNG 68
Query: 81 KLDIAKILIESNR------------CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
+ D +L++ R + +T LH+A + ++ + LL+++ DV
Sbjct: 69 QNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128
Query: 129 AQD 131
A
Sbjct: 129 AAA 131
Score = 44.4 bits (105), Expect = 2e-06
Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 12/83 (14%)
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLEN---------KMKKTPLHLA--- 108
+ + A ++ + L+ + S + + KT L A
Sbjct: 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLN 64
Query: 109 AQEGHVDMCKLLIKHQIDVNAQD 131
G D LL+ ++
Sbjct: 65 LHNGQNDTIALLLDVARKTDSLK 87
Score = 32.4 bits (74), Expect = 0.030
Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 7/44 (15%)
Query: 97 ENKMKKTPLHLAAQEGHVDMCKLL-------IKHQIDVNAQDIE 133
+ + A + + + L K D +D E
Sbjct: 9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPE 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 100 bits (251), Expect = 3e-27
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 35/163 (21%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES---------------NRCSLENKMKKTPLHLAAQEGY 48
G + LH A ++ ++L+E + PL LAA
Sbjct: 93 GQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152
Query: 49 VDMCKLLIKH---QIDVNAQDIVGSSPLHYAA---------KKNKLDIAKILIE------ 90
+ L ++ Q D+ QD G++ LH K + +L+
Sbjct: 153 PHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF 212
Query: 91 --SNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+N +L N +PL +AA+ G + + + +I+ +I A
Sbjct: 213 PDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAH 255
Score = 85.2 bits (211), Expect = 2e-21
Identities = 32/171 (18%), Positives = 48/171 (28%), Gaps = 42/171 (24%)
Query: 3 VGSSPLHYAA---KKNKLDIAKILIESNR------------CSLENKMKKTPLHLAAQEG 47
G + L A + D IL++ +T LH+A +
Sbjct: 45 TGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERR 104
Query: 48 YVDMCKLLIKHQIDVNAQDIV--------------GSSPLHYAAKKNKLDIAKILIE--S 91
+LL++ DV+AQ G PL AA N+ I L E
Sbjct: 105 CKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH 164
Query: 92 NRCSLENKMK--KTPLHLAAQEGH---------VDMCKLLIKHQIDVNAQD 131
+ L + T LH M LL+ +
Sbjct: 165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT 215
Score = 74.0 bits (182), Expect = 4e-17
Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 23/118 (19%)
Query: 37 KTPLHLAA----QEGYVDMCKLLIKHQIDVNAQDI----VGSSPLHYAA---KKNKLDIA 85
+ L +G + L+ H+ + ++ G + L A + D
Sbjct: 6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI 65
Query: 86 KILIESNR------------CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
IL++ +T LH+A + +LL++ DV+AQ
Sbjct: 66 PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQA 123
Score = 29.7 bits (67), Expect = 0.20
Identities = 4/36 (11%), Positives = 12/36 (33%), Gaps = 4/36 (11%)
Query: 102 KTPLHLAA----QEGHVDMCKLLIKHQIDVNAQDIE 133
+ L +G + L+ H+ + ++
Sbjct: 6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFR 41
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 91.9 bits (229), Expect = 2e-25
Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 11 AAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGS 70
+ + + L+ + + L AA+ G D ++L+ + DV A+D GS
Sbjct: 1 GSSHHHHHHSSGLV-PRGSHMGSD-LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGS 58
Query: 71 SPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGHVDMCKLL 120
+PLH AA+ L++ K+L+E+ + + ++K KT ++ G+ D+ ++L
Sbjct: 59 TPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDISIDNGNEDLAEIL 109
Score = 83.8 bits (208), Expect = 3e-22
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK- 101
+ + L+ + + L AA+ + D +IL+ +N + K K
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILM-ANGADVAAKDKN 56
Query: 102 -KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
TPLHLAA+ GH+++ KLL++ DV AQD
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Score = 79.2 bits (196), Expect = 2e-20
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
L AA+ + D +IL+ +N + K K TPLHLAA+ G++++ KLL++ D
Sbjct: 24 LGKKLLEAARAGQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKIL 88
V AQD G + + D+A+IL
Sbjct: 83 VXAQDKFGKTAFDISIDNGNEDLAEIL 109
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 80.4 bits (198), Expect = 5e-19
Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 7/131 (5%)
Query: 11 AAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIV- 68
+ LD +L+ S+ + LAA+ G++ + L + I
Sbjct: 102 TGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA 161
Query: 69 -GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK----TPLHLAAQEGHVDMCKLLIKH 123
AA+ L + L E ++ A GH ++ L+
Sbjct: 162 ENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC 221
Query: 124 QIDVNAQDIEA 134
+ + +I
Sbjct: 222 PVMLAYAEIHE 232
Score = 73.1 bits (179), Expect = 2e-16
Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 5/131 (3%)
Query: 8 LHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDI 67
L + ++ ++++ +++++ + +D LL+ V
Sbjct: 67 LCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA 126
Query: 68 VGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK----TPLHLAAQEGHVDMCKLLIKH 123
AA+ L + L E + M + LAA+ GH+ + L +
Sbjct: 127 ENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCEL 185
Query: 124 QIDVNAQDIEA 134
I+A
Sbjct: 186 APTEATAMIQA 196
Score = 61.1 bits (148), Expect = 3e-12
Identities = 13/128 (10%), Positives = 31/128 (24%), Gaps = 18/128 (14%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLL-------- 55
+ D+ E L + + +
Sbjct: 254 MHDAFKLSNPDGVFDLVT--------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPG 305
Query: 56 IKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVD 115
IK + L A + +L+ + S+ K ++ G +D
Sbjct: 306 IKALAPTATIPGDANELLRLALRLGNQGACALLL--SIPSVLALTKANNYYINETGGRLD 363
Query: 116 MCKLLIKH 123
+ + ++H
Sbjct: 364 LRAVALEH 371
Score = 53.4 bits (128), Expect = 2e-09
Identities = 18/125 (14%), Positives = 36/125 (28%), Gaps = 7/125 (5%)
Query: 12 AKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDM-CKLLIKHQIDVNAQDIVGS 70
+ + I + M++ L + + K L + V
Sbjct: 42 MTLSYKEAIHIFLPGT-----KNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVIC 96
Query: 71 SPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNA 129
+ LD +L+ S+ + LAA+ GH+ + L +
Sbjct: 97 FVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM 156
Query: 130 QDIEA 134
I+A
Sbjct: 157 AMIQA 161
Score = 53.0 bits (127), Expect = 2e-09
Identities = 22/187 (11%), Positives = 41/187 (21%), Gaps = 59/187 (31%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK---TPLHLAAQE-------------- 46
AA+ L + L E ++ AA
Sbjct: 163 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP 222
Query: 47 -------------GYVDMCKLLIKHQIDVNA--------------------QDIVGSSPL 73
G + + +H + + + G L
Sbjct: 223 VMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYML 282
Query: 74 HYAAKKNK---LDIAKILIESNRC------SLENKMKKTPLHLAAQEGHVDMCKLLIKHQ 124
++N LD + L+ + L LA + G+ C LL+
Sbjct: 283 RNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP 342
Query: 125 IDVNAQD 131
+
Sbjct: 343 SVLALTK 349
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 73.1 bits (179), Expect = 1e-16
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 38 TPLHLA---AQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC 94
T LHLA + + L+++ +++ Q GS+ LHY + + K+L+ +
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL-RGKA 229
Query: 95 SLE--NKMKKTPLHLAAQEGHVDMCKLLIKHQ 124
S+E N+ +TPL +A + H +LL +
Sbjct: 230 SIEIANESGETPLDIAKRLKHEHCEELLTQAL 261
Score = 60.8 bits (147), Expect = 3e-12
Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 16/118 (13%)
Query: 4 GSSPLHYA---AKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
+ LH A + L I L++ S + T LH + KLL++ +
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228
Query: 60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMC 117
+ + G +PL A + ++L ++ + H+ HV+
Sbjct: 229 ASIEIANESGETPLDIAKRLKHEHCEELLTQA-------LSGRFNSHV-----HVEYE 274
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 72.8 bits (178), Expect = 2e-16
Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 8/132 (6%)
Query: 4 GSSPLHYAAKKNKLD-IAKILIESNRC--SLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
+ + + + L + + ++ TPLH +++ K L+KH
Sbjct: 96 SNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS 155
Query: 61 DVNAQDIVGSSPLHYAAKKN---KLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVD 115
+ D +G S L A K + L++ L + M +T LH +
Sbjct: 156 NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMT 215
Query: 116 MCKLLIKHQIDV 127
C K+ +D+
Sbjct: 216 GCSAAAKYYLDI 227
Score = 70.1 bits (171), Expect = 2e-15
Identities = 25/155 (16%), Positives = 47/155 (30%), Gaps = 28/155 (18%)
Query: 4 GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEG----YVDMCKLL 55
G++PLH+ L++ K L++ + M ++ L A + LL
Sbjct: 131 GNTPLHWLTSIANLELVKHLVKHGSNRLYG---DNMGESCLVKAVKSVNNYDSGTFEALL 187
Query: 56 IKHQIDVNAQDIVGSSPLHYAA----KKNKLDIAKILIES---------NRCSLENKMKK 102
+ +D + + LH+ AK ++ NR +K
Sbjct: 188 DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK 247
Query: 103 TPLHLAAQEGHVDMCKLLIKHQI----DVNAQDIE 133
D + + +NAQD
Sbjct: 248 ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN 282
Score = 69.7 bits (170), Expect = 2e-15
Identities = 21/150 (14%), Positives = 43/150 (28%), Gaps = 22/150 (14%)
Query: 4 GSSPLHYAAKKN---KLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVD-------- 50
G S L A K + L++ L + M +T LH +
Sbjct: 164 GESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKY 223
Query: 51 ----MCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE-----NKMK 101
+ ++K Q + D ++ +
Sbjct: 224 YLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNG 283
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
T L++AA+ G++ + L+ + D +
Sbjct: 284 DTCLNIAARLGNISIVDALLDYGADPFIAN 313
Score = 67.4 bits (164), Expect = 2e-14
Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 18/125 (14%)
Query: 4 GSSPLHYAA----KKNKLDIAKILIES-------------NRCSLENKMKKTPLHLAAQE 46
+ LH+ AK ++ + E + K + ++
Sbjct: 201 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD 260
Query: 47 GYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPL 105
++ L +NAQD G + L+ AA+ + I L++ + NK P+
Sbjct: 261 SILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPV 320
Query: 106 HLAAQ 110
A
Sbjct: 321 DFGAG 325
Score = 63.9 bits (155), Expect = 3e-13
Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 14/140 (10%)
Query: 4 GSSPLHYAAKKNKLDIAKILI--ESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
+ L ++ L SNR S + H++ ++ Q++
Sbjct: 63 LEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN 122
Query: 62 VNAQ-DIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDM 116
+N D G++PLH+ L++ K L++ + M ++ L A + +
Sbjct: 123 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG---DNMGESCLVKAVKSVNNYD 179
Query: 117 CK----LLIKHQIDVNAQDI 132
LL + +D
Sbjct: 180 SGTFEALLDYLYPCLILEDS 199
Score = 56.6 bits (136), Expect = 1e-10
Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 3/103 (2%)
Query: 32 ENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLD-IAKILIE 90
+ + L +M L + N++ + + + + L +
Sbjct: 59 QKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 118
Query: 91 SNRC--SLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
+ ++ TPLH ++++ K L+KH + D
Sbjct: 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD 161
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 68.9 bits (168), Expect = 4e-15
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 38 TPLHLA---AQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC 94
LHLA A + + + +I++ ++A+ G++ LHYAA N+ D K+L+ R
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL-KGRA 250
Query: 95 SLE--NKMKKTPLHLAAQEGHVDMCKLLIKHQID 126
+ N+ +T L +A ++ H + +LL + Q
Sbjct: 251 LVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284
Score = 55.0 bits (132), Expect = 4e-10
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 4 GSSPLHYA---AKKNKLDIAKILIESNRCSL--ENKMKKTPLHLAAQEGYVDMCKLLIKH 58
LH A A + L + +I N L + T LH AA D KLL+K
Sbjct: 190 EELVLHLAVKVANQASLPLVDFII-QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248
Query: 59 QIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES 91
+ V + G + L A KK+ + ++L ++
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECEELLEQA 281
Score = 45.0 bits (106), Expect = 1e-06
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G++ LHYAA N+ D K+L+ R + N+ +T L +A ++ + + +LL + Q
Sbjct: 226 GNTALHYAALYNQPDCLKLLL-KGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284
Score = 27.6 bits (61), Expect = 1.2
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 103 TPLHLA---AQEGHVDMCKLLIKHQIDVNAQDIE 133
LHLA A + + + +I++ ++A+ +
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD 225
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 66.7 bits (162), Expect = 4e-14
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 29 CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKIL 88
+ TPL A + C+ L+++ +VN D G PLH+A +A +
Sbjct: 228 WVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLF 287
Query: 89 IESN-RCSLENKMKKTPLHLAAQEGHVDMCKLL 120
++ + + PL +A + + D+ LL
Sbjct: 288 LKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 55.6 bits (133), Expect = 3e-10
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 2/115 (1%)
Query: 2 QVGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
Q ++PL A N L + L+++ + + + PLH A G+ + L +K
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVD 115
D+ A+D G PL A + DI +L + + + D
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLL-RLAKMREAEAAQGQAGDETYLDIFRD 346
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 66.5 bits (162), Expect = 4e-14
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 38 TPLHLA---AQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-R 93
LHLA A + + + +I++ ++A+ G++ LHYAA N+ D K+L++
Sbjct: 173 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 232
Query: 94 CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID 126
N+ +T L +A ++ H + +LL + Q
Sbjct: 233 VGTVNEAGETALDIARKKHHKECEELLEQAQAG 265
Score = 38.3 bits (89), Expect = 3e-04
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
G++ LHYAA N+ D K+L++ N+ +T L +A ++ + + +LL + Q
Sbjct: 207 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 265
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.11
Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 47/132 (35%)
Query: 27 NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID---VNAQD--IVGSSP--------- 72
+ +++ + KT HL A + Q++ VN +V P
Sbjct: 345 TQEQVQDYVNKTNSHLPAGK------------QVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 73 LHYAAKKNKLDIAKILIESNRCSLENKMK--------KTPLH---LA-AQEGHVDMCKLL 120
L A + LD ++I S R K+K +P H L A + + K L
Sbjct: 393 LRKAKAPSGLDQSRIPF-SER-----KLKFSNRFLPVASPFHSHLLVPASD---LINKDL 443
Query: 121 IKHQIDVNAQDI 132
+K+ + NA+DI
Sbjct: 444 VKNNVSFNAKDI 455
>2cc1_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance,
broad-spectrum; 2.13A {Mycobacterium fortuitum} SCOP:
e.3.1.1
Length = 262
Score = 28.7 bits (64), Expect = 0.57
Identities = 9/59 (15%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 37 KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCS 95
K + + + ++ + +++ V+A +V +SP+ A ++ +A++ + + S
Sbjct: 46 KGYVAARVLQ-MAEHGEISLDNRVFVDADALVPNSPVTEARAGAEMTLAELCQAALQRS 103
>1n9b_A Penicillinase, beta-lactamase SHV-2; beta-lactam hydrolase,
detergent binding, drug design, radiation damage; HET:
MA4 EPE; 0.90A {Klebsiella pneumoniae} SCOP: e.3.1.1
PDB: 3d4f_A* 2zd8_A* 1q2p_A* 1shv_A* 1vm1_A* 2g2u_A
2h5s_A* 1ong_A* 3c4o_A 3c4p_A 3mke_A* 3mkf_A* 3mxr_A*
3mxs_A* 3n4i_A 2a3u_A* 3opr_A* 3opl_A* 3oph_A* 3opp_A*
...
Length = 265
Score = 27.2 bits (60), Expect = 1.9
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 37 KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCS 95
K L A VD ++ +I QD+V SP+ + + + ++ + S
Sbjct: 48 KVVLCGAVLA-RVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMS 105
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like,
oxidoreductase, competence, redox-active center; 1.40A
{Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Length = 202
Score = 26.6 bits (59), Expect = 2.2
Identities = 6/45 (13%), Positives = 14/45 (31%)
Query: 43 AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKI 87
+ + D + L + Q D + + A K+ +
Sbjct: 92 EDPDSFWDFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPETL 136
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 26.3 bits (57), Expect = 3.8
Identities = 6/43 (13%), Positives = 16/43 (37%)
Query: 71 SPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGH 113
PL Y + + +L + + + + + T ++ G
Sbjct: 484 GPLDYESLQQELALKETVWKKVSPESNEDISTTVVYRMESLGE 526
>1o7e_A L2 beta lactamase; hydrolase, class A; 1.51A {Stenotrophomonas
maltophilia} SCOP: e.3.1.1 PDB: 1n4o_A
Length = 276
Score = 26.1 bits (57), Expect = 4.7
Identities = 7/59 (11%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 37 KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCS 95
K+ L + L+ ++ V D++ +P+ + + + + S
Sbjct: 59 KSMLAATVLS-QAERMPALLDRRVPVGEADLLSHAPVTRRHAGKDMTVRDLCRATIITS 116
>1m40_A TEM-1, beta-lactamase TEM; acylation mechanism, ultra- high
resolution, hydrolase; HET: CB4; 0.85A {Escherichia
coli} SCOP: e.3.1.1 PDB: 1jwp_A* 1nxy_A* 1ny0_A* 1nym_A*
1nyy_A* 1pzo_A* 1erm_A* 1ero_A* 1erq_A* 1s0w_A 1xpb_A
1li0_A 1htz_A 1jtd_A 1esu_A 1jwz_A* 1li9_A 1jwv_A*
1jtg_A 1axb_A* ...
Length = 263
Score = 25.3 bits (55), Expect = 7.2
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 37 KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCS 95
K L A VD + + +I + D+V SP+ + + + ++ + S
Sbjct: 48 KVLLCGAVLS-RVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 105
>1g6a_A Beta-lactamase PSE-4; class A beta-lactamase, carbenicillinase,
R234K mutant, hydrolase; 1.75A {Pseudomonas aeruginosa}
SCOP: e.3.1.1 PDB: 1g68_A
Length = 271
Score = 25.3 bits (55), Expect = 7.7
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 37 KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCS 95
KT + K+ +++ D+V SP+ + + + S
Sbjct: 51 KTIACAKLLY-DAEQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITLDDACFATMTTS 108
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function;
2.00A {Candida albicans} PDB: 2x7p_A
Length = 321
Score = 25.1 bits (54), Expect = 9.3
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 38 TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIV-GSSPLHYAAKKNKLDIAKILIES 91
TPL A Q+GY H + + + GS L N++DIA L E+
Sbjct: 28 TPLFFAQQQGYYK------AHDLSIEFVKVPEGSGRLINLLNSNEVDIAIGLTEA 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.369
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,908,725
Number of extensions: 99798
Number of successful extensions: 1315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 273
Length of query: 134
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,384,350
Effective search space: 223601850
Effective search space used: 223601850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.5 bits)