BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6446
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDS--YRLATGSNDKNIRIYDLNKPDAEPTVYRG 61
+WD+ +G+ +H++ + HF S LATGSND ++++DLN+ + T++ G
Sbjct: 683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-G 741
Query: 62 HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAE 97
H++ + H +F ++ L SC+ D T+RLWDV ++ E
Sbjct: 742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRI--YDLNKPDAEPTVYRG 61
VW+ ++G F S ++D+ + ++ S DK +I +DL P E +G
Sbjct: 1069 VWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE---LKG 1125
Query: 62 HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV 121
H+ ++ F + L + ++ +R+W+VS +L P S+E +GT
Sbjct: 1126 HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG----QLLHSCAPISVE---EGTA--- 1175
Query: 122 THGSCVT 128
THG VT
Sbjct: 1176 THGGWVT 1182
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 35 LATGSNDKNIRIYDL-NKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
+A G D I+I +L N V GH ++H+QF + LIS +ED +++W+
Sbjct: 976 VAFGDEDGAIKIIELPNNRVFSSGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 28 FATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTV 87
F+ D R+A+ DK ++++ + + + H + F +++ + +C+ DK V
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSDDSYIATCSADKKV 681
Query: 88 RLWD 91
++WD
Sbjct: 682 KIWD 685
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK 85
+ F D L + S D I++++ D + H +K + ++ +RL+S + D
Sbjct: 1009 IQFTADGKTLISSSEDSVIQVWNWQTGDY--VFLQAHQETVKDFRLLQD-SRLLSWSFDG 1065
Query: 86 TVRLWDV 92
TV++W+V
Sbjct: 1066 TVKVWNV 1072
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 60 RGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSA----SAEVQKLEFGAV 106
RGH S + V F + + ++ ++D+T+R+W+ SA V K E V
Sbjct: 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 929
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 58 VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
V R H+ + H F ++ R+ SC DKT++++
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVF 642
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDS--YRLATGSNDKNIRIYDLNKPDAEPTVYRG 61
+WD+ +G+ +H++ + HF S LATGSND ++++DLN+ + T++ G
Sbjct: 690 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-G 748
Query: 62 HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAE 97
H++ + H +F ++ L SC+ D T+RLWDV ++ E
Sbjct: 749 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 784
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRI--YDLNKPDAEPTVYRG 61
VW+ ++G F S ++D+ + ++ S DK +I +DL P E +G
Sbjct: 1076 VWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE---LKG 1132
Query: 62 HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV 121
H+ ++ F + L + ++ +R+W+VS +L P S+E +GT
Sbjct: 1133 HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG----QLLHSCAPISVE---EGTA--- 1182
Query: 122 THGSCVT 128
THG VT
Sbjct: 1183 THGGWVT 1189
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
+A G D I+I +L + GH ++H+QF + LIS +ED +++W+
Sbjct: 983 VAFGDEDGAIKIIELPNNRVFSSGV-GHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 28 FATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTV 87
F+ D R+A+ DK ++++ + + + H + F +++ + +C+ DK V
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSDDSYIATCSADKKV 688
Query: 88 RLWD 91
++WD
Sbjct: 689 KIWD 692
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK 85
+ F D L + S D I++++ D + H +K + ++ +RL+S + D
Sbjct: 1016 IQFTADGKTLISSSEDSVIQVWNWQTGDY--VFLQAHQETVKDFRLLQD-SRLLSWSFDG 1072
Query: 86 TVRLWDV 92
TV++W+V
Sbjct: 1073 TVKVWNV 1079
Score = 29.6 bits (65), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 60 RGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSA----SAEVQKLEFGAV 106
RGH S + V F + + ++ ++D+T+R+W+ SA V K E V
Sbjct: 886 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 936
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 58 VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
V R H+ + H F ++ R+ SC DKT++++
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVF 649
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRL--ATGSNDKNIRIYDLNKPDAEPTVYRG 61
+W++++GE +H++ + HF S+ L ATGS+D ++++DLN+ + T++ G
Sbjct: 689 IWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMF-G 747
Query: 62 HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV 121
H++ + H +F ++ L SC+ D T++LWD +++ E + + +LE ++ + V
Sbjct: 748 HTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIV 807
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 16 FQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN 75
FQH V + F D L + S+D I+++ N + RGH +K + KN
Sbjct: 1006 FQHKKTV-WHIQFTADEKTLISSSDDAEIQVW--NWQLDKCIFLRGHQETVKDFRLLKN- 1061
Query: 76 TRLISCAEDKTVRLWD-VSASAEVQKLEFGAVPNSLEISRDGTTITVT 122
+RL+S + D TV++W+ ++ + E + S +IS D T + T
Sbjct: 1062 SRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSST 1109
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRI--YDLNKPDAEPTVYRG 61
VW+ ++G + F S + D+ + ++ S DK +I +DL P E RG
Sbjct: 1075 VWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHE---LRG 1131
Query: 62 HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
H+ ++ F ++T L + ++ +R+W+VS
Sbjct: 1132 HNGCVRCSAFSVDSTLLATGDDNGEIRIWNVS 1163
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 14/108 (12%)
Query: 4 VWDAVSGEELHS---------FQHPH----IVKSSVHFATDSYRLATGSNDKNIRIYDLN 50
+WDA S E S + P ++ ++ D R+ + +K I ++D++
Sbjct: 775 LWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK-IFLFDIH 833
Query: 51 KPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEV 98
++ GH S I++ F N + V LW+ + ++V
Sbjct: 834 TSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKV 881
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 60 RGHSSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
RGH S + V F + + ++ ++D+T+RLW+
Sbjct: 885 RGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWE 916
Score = 29.6 bits (65), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 28 FATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTV 87
F+ D R+A+ DK ++++ + + + H + F ++ + +C+ DK V
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAETGEKLLEI-KAHEDEVLCCAFSTDDRFIATCSVDKKV 687
Query: 88 RLWD 91
++W+
Sbjct: 688 KIWN 691
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 58 VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE 102
V R H+ + H F ++ R+ SC DKT++++ ++ +++
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIK 660
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 25 SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED 84
SV F+ D LATG+ D+ IRI+D+ + +GH I + +F + +L+S + D
Sbjct: 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIV-MILQGHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 85 KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG 124
+TVR+WD L G +L I TT+ V+ G
Sbjct: 187 RTVRIWD---------LRTGQCSLTLSIEDGVTTVAVSPG 217
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYD------LNKPDAEPT 57
+WD +G+ + V + D +A GS D+ +R++D + + D+E
Sbjct: 191 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 250
Query: 58 VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDV 92
GH + V F ++ ++S + D++V+LW++
Sbjct: 251 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 25 SVHFATDSYRLATGSNDKNIRIYDL----NKPDAE-------PTVYRGHSSGIKHVQFFK 73
SV F D + +GS D+++++++L NK D++ Y GH + V +
Sbjct: 261 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 320
Query: 74 NNTRLISCAEDKTVRLWDVSASAEVQKLE 102
N+ ++S ++D+ V WD + + L+
Sbjct: 321 NDEYILSGSKDRGVLFWDKKSGNPLLMLQ 349
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 18/108 (16%)
Query: 12 ELH-SFQHPHIVKSSVHFATDSYRLATGSNDKN-----------IRIYDLNKPDAEPTVY 59
ELH S H +V V F+ D LATG N R+ D + + +P
Sbjct: 56 ELHKSLDHTSVV-CCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENL 114
Query: 60 RGHSSG-----IKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE 102
SS I+ V F + L + AED+ +R+WD+ V L+
Sbjct: 115 NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ 162
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+W A G+ + + S V +++DS L + S+DK ++I+D++ T+ +GHS
Sbjct: 52 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 110
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
+ + F + ++S + D++VR+WDV ++ L + P +++ +RDG+ I
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 167
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
SSV F+ + LA+ S DK I+I+ E T+ GH GI V + ++ L+S ++
Sbjct: 30 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASD 88
Query: 84 DKTVRLWDVSASAEVQKLE 102
DKT+++WDVS+ ++ L+
Sbjct: 89 DKTLKIWDVSSGKCLKTLK 107
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD SG+ L + + +F S + +GS D+++RI+D+ T+ HS
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHS 152
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
+ V F ++ + ++S + D R+WD ++ ++ L
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +G+ L + S+VHF D + + S D RI+D T+ +
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
+ V+F N +++ D T++LWD S
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 4 VWDAVSGEELHSF---QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR 60
+WD SG+ L + +P + S V F+ + + + D ++++D +K T Y
Sbjct: 178 IWDTASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YT 234
Query: 61 GHSSGIKHVQFFKN-----NTRLISCAEDKTVRLWDVSASAEVQKLE 102
GH + + F N ++S +ED V +W++ VQKL+
Sbjct: 235 GHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
GH+ + V+F N L S + DK +++W
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+W A G+ + + S V +++DS L + S+DK ++I+D++ T+ +GHS
Sbjct: 52 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 110
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
+ + F + ++S + D++VR+WDV ++ L + P +++ +RDG+ I
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 167
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
SSV F+ + LA S DK I+I+ E T+ GH GI V + ++ L+S ++
Sbjct: 30 SSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASD 88
Query: 84 DKTVRLWDVSASAEVQKLE 102
DKT+++WDVS+ ++ L+
Sbjct: 89 DKTLKIWDVSSGKCLKTLK 107
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD SG+ L + + +F S + +GS D+++RI+D+ T+ HS
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHS 152
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
+ V F ++ + ++S + D R+WD ++ ++ L
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +G+ L + S+VHF D + + S D RI+D T+ +
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
+ V+F N +++ D T++LWD S
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 4 VWDAVSGEELHSF---QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR 60
+WD SG+ L + +P + S V F+ + + + D ++++D +K T Y
Sbjct: 178 IWDTASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YT 234
Query: 61 GHSSGIKHVQFFKN-----NTRLISCAEDKTVRLWDVSASAEVQKLE 102
GH + + F N ++S +ED V +W++ VQKL+
Sbjct: 235 GHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
GH+ + V+F N L + + DK +++W
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIW 53
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+W A G+ + + S V +++DS L + S+DK ++I+D++ T+ +GHS
Sbjct: 52 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 110
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
+ + F + ++S + D++VR+WDV ++ L + P +++ +RDG+ I
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 167
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
SSV F+ + LA+ S DK I+I+ E T+ GH GI V + ++ L+S ++
Sbjct: 30 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASD 88
Query: 84 DKTVRLWDVSASAEVQKLE 102
DKT+++WDVS+ ++ L+
Sbjct: 89 DKTLKIWDVSSGKCLKTLK 107
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD SG+ L + + +F S + +GS D+++RI+D+ T+ HS
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHS 152
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
+ V F ++ + ++S + D R+WD ++ ++ L
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +G+ L + S+VHF D + + S D RI+D T+ +
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
+ V+F N +++ D T++LWD S
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 4 VWDAVSGEELHSF---QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR 60
+WD SG+ L + +P + S V F+ + + + D ++++D +K T Y
Sbjct: 178 IWDTASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YT 234
Query: 61 GHSSGIKHVQFFKN-----NTRLISCAEDKTVRLWDVSASAEVQKLE 102
GH + + F N ++S +ED V +W++ VQKL+
Sbjct: 235 GHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
GH+ + V+F N L S + DK +++W
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+W A G+ + + S V +++DS L + S+DK ++I+D++ T+ +GHS
Sbjct: 48 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 106
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
+ + F + ++S + D++VR+WDV ++ L + P +++ +RDG+ I
Sbjct: 107 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 163
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
SSV F+ + LA+ S DK I+I+ E T+ GH GI V + ++ L+S ++
Sbjct: 26 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASD 84
Query: 84 DKTVRLWDVSASAEVQKLE 102
DKT+++WDVS+ ++ L+
Sbjct: 85 DKTLKIWDVSSGKCLKTLK 103
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD SG+ L + + +F S + +GS D+++RI+D+ T+ HS
Sbjct: 90 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHS 148
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
+ V F ++ + ++S + D R+WD ++ ++ L
Sbjct: 149 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 186
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +G+ L + S+VHF D + + S D RI+D T+ +
Sbjct: 132 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 191
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
+ V+F N +++ D T++LWD S
Sbjct: 192 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 221
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 4 VWDAVSGEELHSF---QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR 60
+WD SG+ L + +P + S V F+ + + + D ++++D +K T Y
Sbjct: 174 IWDTASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YT 230
Query: 61 GHSSGIKHVQFFKN-----NTRLISCAEDKTVRLWDVSASAEVQKLE 102
GH + + F N ++S +ED V +W++ VQKL+
Sbjct: 231 GHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 275
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
GH+ + V+F N L S + DK +++W
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIW 49
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+W A G+ + + S V +++DS L + S+DK ++I+D++ T+ +GHS
Sbjct: 55 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 113
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
+ + F + ++S + D++VR+WDV ++ L + P +++ +RDG+ I
Sbjct: 114 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 170
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
SSV F+ + LA+ S DK I+I+ E T+ GH GI V + ++ L+S ++
Sbjct: 33 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASD 91
Query: 84 DKTVRLWDVSASAEVQKLE 102
DKT+++WDVS+ ++ L+
Sbjct: 92 DKTLKIWDVSSGKCLKTLK 110
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD SG+ L + + +F S + +GS D+++RI+D+ T+ HS
Sbjct: 97 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHS 155
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
+ V F ++ + ++S + D R+WD ++ ++ L
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +G+ L + S+VHF D + + S D RI+D T+ +
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
+ V+F N +++ D T++LWD S
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 4 VWDAVSGEELHSF---QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR 60
+WD SG+ L + +P + S V F+ + + + D ++++D +K T Y
Sbjct: 181 IWDTASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YT 237
Query: 61 GHSSGIKHVQFFKN-----NTRLISCAEDKTVRLWDVSASAEVQKLE 102
GH + + F N ++S +ED V +W++ VQKL+
Sbjct: 238 GHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
GH+ + V+F N L S + DK +++W
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+W A G+ + + S V +++DS L + S+DK ++I+D++ T+ +GHS
Sbjct: 49 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 107
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
+ + F + ++S + D++VR+WDV ++ L + P +++ +RDG+ I
Sbjct: 108 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 164
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
SSV F+ + LA+ S DK I+I+ E T+ GH GI V + ++ L+S ++
Sbjct: 27 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASD 85
Query: 84 DKTVRLWDVSASAEVQKLE 102
DKT+++WDVS+ ++ L+
Sbjct: 86 DKTLKIWDVSSGKCLKTLK 104
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD SG+ L + + +F S + +GS D+++RI+D+ T+ HS
Sbjct: 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHS 149
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
+ V F ++ + ++S + D R+WD ++ ++ L
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +G+ L + S+VHF D + + S D RI+D T+ +
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
+ V+F N +++ D T++LWD S
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 4 VWDAVSGEELHSF---QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR 60
+WD SG+ L + +P + S V F+ + + + D ++++D +K T Y
Sbjct: 175 IWDTASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YT 231
Query: 61 GHSSGIKHVQFFKN-----NTRLISCAEDKTVRLWDVSASAEVQKLE 102
GH + + F N ++S +ED V +W++ VQKL+
Sbjct: 232 GHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
GH+ + V+F N L S + DK +++W
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIW 50
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+W A G+ + + S V +++DS L + S+DK ++I+D++ T+ +GHS
Sbjct: 52 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 110
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
+ + F + ++S + D++VR+WDV ++ L + P +++ +RDG+ I
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLI 167
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
SSV F+ + LA+ S DK I+I+ E T+ GH GI V + ++ L+S ++
Sbjct: 30 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASD 88
Query: 84 DKTVRLWDVSASAEVQKLE 102
DKT+++WDVS+ ++ L+
Sbjct: 89 DKTLKIWDVSSGKCLKTLK 107
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD SG+ L + + +F S + +GS D+++RI+D+ T+ HS
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL-PAHS 152
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
+ V F ++ + ++S + D R+WD ++ ++ L
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +G L + S+VHF D + + S D RI+D T+ +
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
+ V+F N +++ D T++LWD S
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 4 VWDAVSGEELHSF---QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR 60
+WD SG+ L + +P + S V F+ + + + D ++++D +K T Y
Sbjct: 178 IWDTASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YT 234
Query: 61 GHSSGIKHVQFFKN-----NTRLISCAEDKTVRLWDVSASAEVQKLE 102
GH + + F N ++S +ED V +W++ VQKL+
Sbjct: 235 GHKN--EKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
GH+ + V+F N L S + DK +++W
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+W A G+ + + S V +++DS L + S+DK ++I+D++ T+ +GHS
Sbjct: 50 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 108
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
+ + F + ++S + D++VR+WDV ++ L + P +++ +RDG+ I
Sbjct: 109 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 165
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
SSV F+ + LA+ S DK I+I+ E T+ GH GI V + ++ L+S ++
Sbjct: 28 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASD 86
Query: 84 DKTVRLWDVSASAEVQKLE 102
DKT+++WDVS+ ++ L+
Sbjct: 87 DKTLKIWDVSSGKCLKTLK 105
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD SG+ L + + +F S + +GS D+++RI+D+ T+ HS
Sbjct: 92 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHS 150
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
+ V F ++ + ++S + D R+WD ++ ++ L
Sbjct: 151 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 188
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +G+ L + S+VHF D + + S D RI+D T+ +
Sbjct: 134 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 193
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
+ V+F N +++ D T++LWD S
Sbjct: 194 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 223
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 4 VWDAVSGEELHSF---QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR 60
+WD SG+ L + +P + S V F+ + + + D ++++D +K T Y
Sbjct: 176 IWDTASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YT 232
Query: 61 GHSSGIKHVQFFKN-----NTRLISCAEDKTVRLWDVSASAEVQKLE 102
GH + + F N ++S +ED V +W++ VQKL+
Sbjct: 233 GHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 277
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
GH+ + V+F N L S + DK +++W
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIW 51
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+W A G+ + + S V +++DS L + S+DK ++I+D++ T+ +GHS
Sbjct: 55 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 113
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
+ + F + ++S + D++VR+WDV ++ L + P +++ +RDG+ I
Sbjct: 114 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 170
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
SSV F+ + LA+ S DK I+I+ E T+ GH GI V + ++ L+S ++
Sbjct: 33 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASD 91
Query: 84 DKTVRLWDVSASAEVQKLE 102
DKT+++WDVS+ ++ L+
Sbjct: 92 DKTLKIWDVSSGKCLKTLK 110
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD SG+ L + + +F S + +GS D+++RI+D+ T+ HS
Sbjct: 97 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHS 155
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
+ V F ++ + ++S + D R+WD ++ ++ L
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +G+ L + S+VHF D + + S D RI+D T+ +
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
+ V+F N +++ D T++LWD S
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 4 VWDAVSGEELHSF---QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR 60
+WD SG+ L + +P + S V F+ + + + D ++++D +K T Y
Sbjct: 181 IWDTASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YT 237
Query: 61 GHSSGIKHVQFFKN-----NTRLISCAEDKTVRLWDVSASAEVQKLE 102
GH + + F N ++S +ED V +W++ VQKL+
Sbjct: 238 GHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
GH+ + V+F N L S + DK +++W
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+W A G+ + + S V +++DS L + S+DK ++I+D++ T+ +GHS
Sbjct: 66 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 124
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
+ + F + ++S + D++VR+WDV ++ L + P +++ +RDG+ I
Sbjct: 125 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 181
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
SSV F+ + LA+ S DK I+I+ E T+ GH GI V + ++ L+S ++
Sbjct: 44 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASD 102
Query: 84 DKTVRLWDVSASAEVQKLE 102
DKT+++WDVS+ ++ L+
Sbjct: 103 DKTLKIWDVSSGKCLKTLK 121
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD SG+ L + + +F S + +GS D+++RI+D+ T+ HS
Sbjct: 108 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHS 166
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
+ V F ++ + ++S + D R+WD ++ ++ L
Sbjct: 167 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 204
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +G+ L + S+VHF D + + S D RI+D T+ +
Sbjct: 150 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 209
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
+ V+F N +++ D T++LWD S
Sbjct: 210 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 239
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 4 VWDAVSGEELHSF---QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR 60
+WD SG+ L + +P + S V F+ + + + D ++++D +K T Y
Sbjct: 192 IWDTASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YT 248
Query: 61 GHSSGIKHVQFFKN-----NTRLISCAEDKTVRLWDVSASAEVQKLE 102
GH + + F N ++S +ED V +W++ VQKL+
Sbjct: 249 GHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 293
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
GH+ + V+F N L S + DK +++W
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIW 67
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+W A G+ + + S V +++DS L + S+DK ++I+D++ T+ +GHS
Sbjct: 54 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 112
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
+ + F + ++S + D++VR+WDV ++ L + P +++ +RDG+ I
Sbjct: 113 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 169
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
SSV F+ + LA+ S DK I+I+ E T+ GH GI V + ++ L+S ++
Sbjct: 32 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASD 90
Query: 84 DKTVRLWDVSASAEVQKLE 102
DKT+++WDVS+ ++ L+
Sbjct: 91 DKTLKIWDVSSGKCLKTLK 109
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD SG+ L + + +F S + +GS D+++RI+D+ T+ HS
Sbjct: 96 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHS 154
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
+ V F ++ + ++S + D R+WD ++ ++ L
Sbjct: 155 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 192
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +G+ L + S+VHF D + + S D RI+D T+ +
Sbjct: 138 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 197
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
+ V+F N +++ D T++LWD S
Sbjct: 198 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 227
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 4 VWDAVSGEELHSF---QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR 60
+WD SG+ L + +P + S V F+ + + + D ++++D +K T Y
Sbjct: 180 IWDTASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YT 236
Query: 61 GHSSGIKHVQFFKN-----NTRLISCAEDKTVRLWDVSASAEVQKLE 102
GH + + F N ++S +ED V +W++ VQKL+
Sbjct: 237 GHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 281
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
GH+ + V+F N L S + DK +++W
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIW 55
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+W A G+ + + S V +++DS L + S+DK ++I+D++ T+ +GHS
Sbjct: 52 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 110
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
+ + F + ++S + D++VR+WDV ++ L + P +++ +RDG+ I
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLI 167
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
SSV F+ + LA+ S DK I+I+ E T+ GH GI V + ++ L+S ++
Sbjct: 30 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASD 88
Query: 84 DKTVRLWDVSASAEVQKLE 102
DKT+++WDVS+ ++ L+
Sbjct: 89 DKTLKIWDVSSGKCLKTLK 107
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD SG+ L + + +F S + +GS D+++RI+D+ T+ HS
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL-PAHS 152
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
+ V F ++ + ++S + D R+WD ++ ++ L
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +G L + S+VHF D + + S D RI+D T+ +
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
+ V+F N +++ D ++LWD S
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNDLKLWDYS 225
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 4 VWDAVSGEELHSF---QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR 60
+WD SG+ L + +P + S V F+ + + + D +++++D +K T Y
Sbjct: 178 IWDTASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKT-YT 234
Query: 61 GHSSGIKHVQFFKN-----NTRLISCAEDKTVRLWDVSASAEVQKLE 102
GH + + F N ++S +ED V +W++ VQKL+
Sbjct: 235 GHKN--EKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
GH+ + V+F N L S + DK +++W
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+W A G+ + + S V +++DS L + S+DK ++I+D++ T+ +GHS
Sbjct: 55 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 113
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
+ + F + ++S + D++VR+WDV ++ L + P +++ +RDG+ I
Sbjct: 114 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 170
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
SSV F+ + LA+ S DK I+I+ E T+ GH GI V + ++ L+S ++
Sbjct: 33 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASD 91
Query: 84 DKTVRLWDVSASAEVQKLE 102
DKT+++WDVS+ ++ L+
Sbjct: 92 DKTLKIWDVSSGKCLKTLK 110
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD SG+ L + + +F S + +GS D+++RI+D+ T+ HS
Sbjct: 97 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHS 155
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
+ V F ++ + ++S + D R+WD ++ ++ L
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +G+ L + S+VHF D + + S D RI+D T+ +
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
+ V+F N +++ D T++LWD S
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 4 VWDAVSGEELHSF---QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR 60
+WD SG+ L + +P + S V F+ + + + D ++++D +K T Y
Sbjct: 181 IWDTASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YT 237
Query: 61 GHSSGIKHVQFFKN-----NTRLISCAEDKTVRLWDVSASAEVQKLE 102
GH + + F N ++S +ED V +W++ VQKL+
Sbjct: 238 GHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
GH+ + V+F N L S + DK +++W
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+W A G+ + + S V +++DS L + S+DK ++I+D++ T+ +GHS
Sbjct: 49 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 107
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
+ + F + ++S + D++VR+WDV ++ L + P +++ +RDG+ I
Sbjct: 108 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 164
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
SSV F+ + LA+ S DK I+I+ E T+ GH GI V + ++ L+S ++
Sbjct: 27 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASD 85
Query: 84 DKTVRLWDVSASAEVQKLE 102
DKT+++WDVS+ ++ L+
Sbjct: 86 DKTLKIWDVSSGKCLKTLK 104
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD SG+ L + + +F S + +GS D+++RI+D+ T+ HS
Sbjct: 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHS 149
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
+ V F ++ + ++S + D R+WD ++ ++ L
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +G+ L + S+VHF D + + S D RI+D T+ +
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
+ V+F N +++ D T++LWD S
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 4 VWDAVSGEELHSF---QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR 60
+WD SG+ L + +P + S V F+ + + + D ++++D +K T Y
Sbjct: 175 IWDTASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YT 231
Query: 61 GHSSGIKHVQFFKN-----NTRLISCAEDKTVRLWDVSASAEVQKLE 102
GH + + F N ++S +ED V +W++ VQKL+
Sbjct: 232 GHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
GH+ + V+F N L S + DK +++W
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIW 50
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+W A G+ + + S V +++DS L + S+DK ++I+D++ T+ +GHS
Sbjct: 45 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 103
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
+ + F + ++S + D++VR+WDV ++ L + P +++ +RDG+ I
Sbjct: 104 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 160
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
SSV F+ + LA+ S DK I+I+ E T+ GH GI V + ++ L+S ++
Sbjct: 23 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASD 81
Query: 84 DKTVRLWDVSASAEVQKLE 102
DKT+++WDVS+ ++ L+
Sbjct: 82 DKTLKIWDVSSGKCLKTLK 100
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD SG+ L + + +F S + +GS D+++RI+D+ T+ HS
Sbjct: 87 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHS 145
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
+ V F ++ + ++S + D R+WD ++ ++ L
Sbjct: 146 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 183
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +G+ L + S+VHF D + + S D RI+D T+ +
Sbjct: 129 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 188
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
+ V+F N +++ D T++LWD S
Sbjct: 189 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 218
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 4 VWDAVSGEELHSF---QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR 60
+WD SG+ L + +P + S V F+ + + + D ++++D +K T Y
Sbjct: 171 IWDTASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YT 227
Query: 61 GHSSGIKHVQFFKN-----NTRLISCAEDKTVRLWDVSASAEVQKLE 102
GH + + F N ++S +ED V +W++ VQKL+
Sbjct: 228 GHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 272
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
GH+ + V+F N L S + DK +++W
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIW 46
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+W A G+ + + S V +++DS L + S+DK ++I+D++ T+ +GHS
Sbjct: 71 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 129
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
+ + F + ++S + D++VR+WDV ++ L + P +++ +RDG+ I
Sbjct: 130 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 186
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
SSV F+ + LA+ S DK I+I+ E T+ GH GI V + ++ L+S ++
Sbjct: 49 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASD 107
Query: 84 DKTVRLWDVSASAEVQKLE 102
DKT+++WDVS+ ++ L+
Sbjct: 108 DKTLKIWDVSSGKCLKTLK 126
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD SG+ L + + +F S + +GS D+++RI+D+ T+ HS
Sbjct: 113 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHS 171
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
+ V F ++ + ++S + D R+WD ++ ++ L
Sbjct: 172 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +G+ L + S+VHF D + + S D RI+D T+ +
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
+ V+F N +++ D T++LWD S
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 244
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 4 VWDAVSGEELHSF---QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR 60
+WD SG+ L + +P + S V F+ + + + D ++++D +K T Y
Sbjct: 197 IWDTASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YT 253
Query: 61 GHSSGIKHVQFFKN-----NTRLISCAEDKTVRLWDVSASAEVQKLE 102
GH + + F N ++S +ED V +W++ VQKL+
Sbjct: 254 GHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
GH+ + V+F N L S + DK +++W
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIW 72
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+W A G+ + + S V +++DS L + S+DK ++I+D++ T+ +GHS
Sbjct: 73 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 131
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
+ + F + ++S + D++VR+WDV ++ L + P +++ +RDG+ I
Sbjct: 132 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 188
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
SSV F+ + LA+ S DK I+I+ E T+ GH GI V + ++ L+S ++
Sbjct: 51 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASD 109
Query: 84 DKTVRLWDVSASAEVQKLE 102
DKT+++WDVS+ ++ L+
Sbjct: 110 DKTLKIWDVSSGKCLKTLK 128
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD SG+ L + + +F S + +GS D+++RI+D+ T+ HS
Sbjct: 115 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHS 173
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
+ V F ++ + ++S + D R+WD ++ ++ L
Sbjct: 174 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +G+ L + S+VHF D + + S D RI+D T+ +
Sbjct: 157 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 216
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
+ V+F N +++ D T++LWD S
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 246
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 4 VWDAVSGEELHSF---QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR 60
+WD SG+ L + +P + S V F+ + + + D ++++D +K T Y
Sbjct: 199 IWDTASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YT 255
Query: 61 GHSSGIKHVQFFKN-----NTRLISCAEDKTVRLWDVSASAEVQKLE 102
GH + + F N ++S +ED V +W++ VQKL+
Sbjct: 256 GHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 300
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
GH+ + V+F N L S + DK +++W
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIW 74
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
VWD SG+ + +F+ +SV + A+GS+D R+YDL + D E +Y S
Sbjct: 224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL-RADREVAIYSKES 282
Query: 64 S--GIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG--AVPNSLEISRDGTTI 119
G V F + L + D T+ +WDV + V L FG ++L +S DGT
Sbjct: 283 IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL-FGHENRVSTLRVSPDGTAF 341
Score = 32.7 bits (73), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 4 VWDAVSGEELHSFQHPHIV--KSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG 61
++D + E+ + I+ SSV F+ L G ND I ++D+ K + ++ G
Sbjct: 266 LYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG-SRVSILFG 324
Query: 62 HSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
H + + ++ + T S + D T+R+W
Sbjct: 325 HENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 60 RGHSSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
+GH + + + + K+ R++S ++D V +WD
Sbjct: 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD 92
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG-HSSGIKHVQFFKNNTRLISCAED 84
V ++ D+ RLATGS D ++ ++++NKP P + +G H+ + + N T ++S +D
Sbjct: 542 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 601
Query: 85 KTVRLWDV 92
++ W+V
Sbjct: 602 SNIKFWNV 609
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 25 SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT-VYR-------GHSSGIKHVQFFKNNT 76
SV + D A+ D I +Y N D T V+ HS + + + + T
Sbjct: 195 SVRYNPDGSLFASTGGDGTIVLY--NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 252
Query: 77 RLISCAEDKTVRLWDVSASAEVQK 100
++ S + DKT+++W+V A+ +V+K
Sbjct: 253 KIASASADKTIKIWNV-ATLKVEK 275
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 4 VWDAVSGEELHSFQ------HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT 57
+WD +G+ + F H V S + ++ +GS D +R++DL
Sbjct: 184 LWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR 243
Query: 58 VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQ 99
Y GH I V+FF + R + ++D T RL+D+ ++Q
Sbjct: 244 TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 15/106 (14%)
Query: 4 VWDAVSGEELHSFQ--HPHIVKSSVHFATDSYRLATGSNDKNIRIYDL--------NKPD 53
VW+A++ ++ H+ + P +++ + FA + +A G D I++L N P
Sbjct: 92 VWNALTSQKTHAIKLHCPWVMECA--FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPV 149
Query: 54 AEP-TVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEV 98
+ T ++G++S ++V TRLI+ + D+T LWDV+ +
Sbjct: 150 SRVLTGHKGYASSCQYVP--DQETRLITGSGDQTCVLWDVTTGQRI 193
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 4 VWDAVSGE---ELHSFQHPHIVK-SSVHFATDSYRLATGSNDKNIRIY 47
VWD + E L + Q+ H + S + ++D L TGS DKN++I+
Sbjct: 324 VWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 24 SSVHFATDS-YRLATGSNDKNIRIYDLNKPDAEPTVY-----RGHSSGIKHVQFFKNNTR 77
SS + D RL TGS D+ ++D+ +++ GH++ + + N
Sbjct: 161 SSCQYVPDQETRLITGSGDQTCVLWDVTTGQ-RISIFGSEFPSGHTADVLSLSINSLNAN 219
Query: 78 L-ISCAEDKTVRLWDVSASAEVQKLEFG 104
+ IS + D TVRLWD+ ++ + G
Sbjct: 220 MFISGSCDTTVRLWDLRITSRAVRTYHG 247
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK 85
V F+ D +A+ S+DK +++++ N + GHSS ++ V F + + S ++DK
Sbjct: 63 VAFSPDGQTIASASDDKTVKLWNRNGQLLQ--TLTGHSSSVRGVAFSPDGQTIASASDDK 120
Query: 86 TVRLWD 91
TV+LW+
Sbjct: 121 TVKLWN 126
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK 85
V F+ D +A+ S+DK +++++ N + GHSS ++ V F + + S ++DK
Sbjct: 186 VAFSPDGQTIASASDDKTVKLWNRNGQLLQ--TLTGHSSSVRGVAFSPDGQTIASASDDK 243
Query: 86 TVRLWD 91
TV+LW+
Sbjct: 244 TVKLWN 249
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK 85
V F+ D +A+ S+DK +++++ N + GHSS ++ V F + + S ++DK
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWNRNGQLLQ--TLTGHSSSVRGVAFSPDGQTIASASDDK 407
Query: 86 TVRLWD 91
TV+LW+
Sbjct: 408 TVKLWN 413
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK 85
V F+ D +A+ S+DK +++++ N + GHSS ++ V F + + S ++DK
Sbjct: 473 VAFSPDGQTIASASDDKTVKLWNRNGQLLQ--TLTGHSSSVRGVAFSPDGQTIASASDDK 530
Query: 86 TVRLWD 91
TV+LW+
Sbjct: 531 TVKLWN 536
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK 85
V F+ D +A+ S+DK +++++ N + GHSS ++ V F + + S ++DK
Sbjct: 432 VAFSPDDQTIASASDDKTVKLWNRNGQLLQ--TLTGHSSSVRGVAFSPDGQTIASASDDK 489
Query: 86 TVRLWD 91
TV+LW+
Sbjct: 490 TVKLWN 495
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK 85
V F+ D +A+ S+DK +++++ N + GHSS + V F + + S ++DK
Sbjct: 227 VAFSPDGQTIASASDDKTVKLWNRNGQLLQ--TLTGHSSSVNGVAFRPDGQTIASASDDK 284
Query: 86 TVRLWD 91
TV+LW+
Sbjct: 285 TVKLWN 290
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK 85
V F+ D +A+ S+DK +++++ N + GHSS + V F + + S ++DK
Sbjct: 309 VAFSPDGQTIASASDDKTVKLWNRNGQHLQ--TLTGHSSSVWGVAFSPDGQTIASASDDK 366
Query: 86 TVRLWD 91
TV+LW+
Sbjct: 367 TVKLWN 372
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK 85
V F+ D +A+ S+DK +++++ N + GHSS + V F ++ + S ++DK
Sbjct: 391 VAFSPDGQTIASASDDKTVKLWNRNGQLLQ--TLTGHSSSVWGVAFSPDDQTIASASDDK 448
Query: 86 TVRLWD 91
TV+LW+
Sbjct: 449 TVKLWN 454
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK 85
V F+ D +A+ S+DK +++++ N + GHSS + V F + + S ++DK
Sbjct: 22 VAFSPDGQTIASASDDKTVKLWNRNGQLLQ--TLTGHSSSVWGVAFSPDGQTIASASDDK 79
Query: 86 TVRLWD 91
TV+LW+
Sbjct: 80 TVKLWN 85
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK 85
V F+ D +A+ S+DK +++++ N + GHSS + V F + + S ++DK
Sbjct: 104 VAFSPDGQTIASASDDKTVKLWNRNGQLLQ--TLTGHSSSVWGVAFSPDGQTIASASDDK 161
Query: 86 TVRLWD 91
TV+LW+
Sbjct: 162 TVKLWN 167
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK 85
V F+ D +A+ S+DK +++++ N + GHSS + V F + + S ++DK
Sbjct: 145 VAFSPDGQTIASASDDKTVKLWNRNGQLLQ--TLTGHSSSVWGVAFSPDGQTIASASDDK 202
Query: 86 TVRLWD 91
TV+LW+
Sbjct: 203 TVKLWN 208
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK 85
V F+ D +A+ S+DK +++++ N + GHSS + V F + + S + DK
Sbjct: 514 VAFSPDGQTIASASDDKTVKLWNRNGQLLQ--TLTGHSSSVWGVAFSPDGQTIASASSDK 571
Query: 86 TVRLWD 91
TV+LW+
Sbjct: 572 TVKLWN 577
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK 85
V F D +A+ S+DK +++++ N + GHSS + V F + + S ++DK
Sbjct: 268 VAFRPDGQTIASASDDKTVKLWNRNGQLLQ--TLTGHSSSVWGVAFSPDGQTIASASDDK 325
Query: 86 TVRLWD 91
TV+LW+
Sbjct: 326 TVKLWN 331
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 62 HSSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
HSS ++ V F + + S ++DKTV+LW+
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWN 44
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
L +GS DK I+++D++ T+ GH + ++ V F ++SCA+DKT+R+WD
Sbjct: 311 LLSGSRDKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
+ + S D I+++D D E T+ +GH+ ++ + F + L SC+ D T++LWD
Sbjct: 123 MVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 4 VWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH 62
+WD E + + H H V SSV + + + S DK I+++++ T + GH
Sbjct: 176 LWDFQGFECIRTMHGHDHNV-SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT-FTGH 233
Query: 63 SSGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
++ V+ ++ T + SC+ D+TVR+W V+
Sbjct: 234 REWVRMVRPNQDGTLIASCSNDQTVRVWVVA 264
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
VWD +G+ + + + F LA+ S D I+++D + T++ GH
Sbjct: 134 VWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH-GHD 192
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDV 92
+ V N ++S + DKT+++W+V
Sbjct: 193 HNVSSVSIMPNGDHIVSASRDKTIKMWEV 221
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 4 VWDAVSGEELHSF-QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH 62
+WD +G L + H + V+ V F + + + ++DK +R++D T+ H
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRG-VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAH 379
Query: 63 SSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
+ + F K +++ + D+TV++W+
Sbjct: 380 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 55 EPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
E GH S + V F + ++S +ED T+++WD
Sbjct: 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD 136
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 21/110 (19%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+W+ +G + +F V D +A+ SND+ +R++ + + + + R H
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL-REHR 276
Query: 64 SGIKHVQFF--------------------KNNTRLISCAEDKTVRLWDVS 93
++ + + K L+S + DKT+++WDVS
Sbjct: 277 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAE---PTVYRGHSSGIKHVQFFKN 74
H + VK V ++ D Y LAT S DK++ I++ ++ E +V + HS +KHV + +
Sbjct: 106 HENEVKG-VAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS 164
Query: 75 NTRLISCAEDKTVRLW 90
L S + D TVR+W
Sbjct: 165 EALLASSSYDDTVRIW 180
Score = 33.5 bits (75), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPT-------VYRGHSSGIKHVQFFKNNTRLISCAEDKTV 87
LA GS D + I+ + A+ T + GH + +K V + + L +C+ DK+V
Sbjct: 73 LAAGSFDSTVSIW-AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSV 131
Query: 88 RLWDVSASAE 97
+W+ S E
Sbjct: 132 WIWETDESGE 141
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 9 SGEELHSF----QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT-VYRGHS 63
SGEE +H VK + +++ LA+ S D +RI+ D E V GH
Sbjct: 139 SGEEYECISVLQEHSQDVKHVIWHPSEAL-LASSSYDDTVRIWKDYDDDWECVAVLNGHE 197
Query: 64 SGIKHVQFFKNNT--RLISCAEDKTVRLWDVSASAEVQKLEF 103
+ F K RL S ++D TVR+W E + E+
Sbjct: 198 GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW 239
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 35 LATGSNDKNIRIYDLNKPD---AEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
LATGS D+ I++ + D + H I+ V + + + L + + D TV +W
Sbjct: 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA 86
Query: 92 VSASAE 97
SA+
Sbjct: 87 KEESAD 92
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
S + D + TGS+D +R++D+N + T+ H + H++F NN +++C++
Sbjct: 175 SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIH-HCEAVLHLRF--NNGMMVTCSK 231
Query: 84 DKTVRLWDVSASAEV 98
D+++ +WD+++ ++
Sbjct: 232 DRSIAVWDMASPTDI 246
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 4 VWDAVSGEE--LHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG 61
VWD S + L H +V D Y + + S D+ I++++ + + T+ G
Sbjct: 237 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKY-IVSASGDRTIKVWNTSTCEFVRTL-NG 294
Query: 62 HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE 102
H GI +Q+ + ++S + D T+RLWD+ A ++ LE
Sbjct: 295 HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE 333
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 14 HSFQHPHI----VKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHV 69
HS Q H K D ++ +G D I+I+D N + + + GH+ + +
Sbjct: 121 HSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECK-RILTGHTGSVLCL 179
Query: 70 QFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
Q+ + +I+ + D TVR+WDV+ + L
Sbjct: 180 QY--DERVIITGSSDSTVRVWDVNTGEMLNTL 209
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +G F SV F++D+ ++ +GS DK I++++ HS
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS 171
Query: 64 SGIKHVQFFKN--NTRLISCAEDKTVRLWDVSASAEVQKLEFG--AVPNSLEISRDGT 117
+ V+F N N ++SC DK V++W++ A+ +++ G N++ +S DG+
Sbjct: 172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL-ANCKLKTNHIGHTGYLNTVTVSPDGS 228
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR 77
H H V S V ++D +GS D +R++DL + GH+ + V F +N +
Sbjct: 85 HSHFV-SDVVISSDGQFALSGSWDGTLRLWDLTT-GTTTRRFVGHTKDVLSVAFSSDNRQ 142
Query: 78 LISCAEDKTVRLWD 91
++S + DKT++LW+
Sbjct: 143 IVSGSRDKTIKLWN 156
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTV----YRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
+ + S DK I ++ L + + + RGHS + V + +S + D T+RLW
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113
Query: 91 DVSASAEVQKL 101
D++ ++
Sbjct: 114 DLTTGTTTRRF 124
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +G F SV F++D+ ++ +GS DK I++++ HS
Sbjct: 89 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS 148
Query: 64 SGIKHVQFFKN--NTRLISCAEDKTVRLWDVSASAEVQKLEFG--AVPNSLEISRDGT 117
+ V+F N N ++SC DK V++W++ A+ +++ G N++ +S DG+
Sbjct: 149 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL-ANCKLKTNHIGHTGYLNTVTVSPDGS 205
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR 77
H H V S V ++D +GS D +R++DL + GH+ + V F +N +
Sbjct: 62 HSHFV-SDVVISSDGQFALSGSWDGTLRLWDLTT-GTTTRRFVGHTKDVLSVAFSSDNRQ 119
Query: 78 LISCAEDKTVRLWD 91
++S + DKT++LW+
Sbjct: 120 IVSGSRDKTIKLWN 133
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTV----YRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
+ + S DK I ++ L + + + RGHS + V + +S + D T+RLW
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 90
Query: 91 DVSASAEVQKL 101
D++ ++
Sbjct: 91 DLTTGTTTRRF 101
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
++D +G+ LH+ + + S+ F+ DS L T S+D I+IYD+ + T+ GH+
Sbjct: 190 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL-SGHA 248
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDV 92
S + +V F ++T +S + DK+V++WDV
Sbjct: 249 SWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTV-YRGH 62
+WD +G+++ S + ++ F+ DS LATG++ + I+ + E ++ RG
Sbjct: 106 LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK 165
Query: 63 SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRD 115
I + + + L S A D + ++D++ + LE A+P SL S D
Sbjct: 166 F--ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD 217
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 31 DSYRLATGSNDKNIRIYDL--NKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVR 88
+S + TGS D ++++ + D + ++ GH G+ V S + D +R
Sbjct: 47 NSETVVTGSLDDLVKVWKWRDERLDLQWSL-EGHQLGVVSVDISHTLPIAASSSLDAHIR 105
Query: 89 LWDVSASAEVQKLEFGAV 106
LWD+ +++ ++ G V
Sbjct: 106 LWDLENGKQIKSIDAGPV 123
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 4 VWDAVSGEEL-----HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTV 58
+W+ + E L ++H IVK+ F +D + +G D +++++DL++ A
Sbjct: 119 LWEILEKESLLVNKFAKYEHDDIVKTLSVF-SDGTQAVSGGKDFSVKVWDLSQ-KAVLKS 176
Query: 59 YRGHSSGIKHVQFFKN-NTRLISCAEDKTVRLWDVSASAEVQKLEFGA---VPNSL 110
Y HSS + V +T +SC ED + LWD +++F A +P S+
Sbjct: 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSV 232
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 10 GEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKH 68
G + SF+ H HIV+ A +Y L + S DK +R++D+ + + GH S +
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQR-FVGHKSDVMS 112
Query: 69 VQFFKNNTRLISCAEDKTVRLWDV 92
V K + +IS + DKT+++W +
Sbjct: 113 VDIDKKASMIISGSRDKTIKVWTI 136
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +GE F SV + + +GS DK I+++ + K T+ GH+
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLL-GHN 148
Query: 64 SGIKHVQFFKN------NTRLISCAEDKTVRLWDVSA-SAEVQKLEFGAVPNSLEISRDG 116
+ V+ N + +IS DK V+ W+++ E + + N+L S DG
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 117 TTI 119
T I
Sbjct: 209 TLI 211
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 31 DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
DS + + NDK ++ ++LN+ E + GH+S I + + T + S +D + LW
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 91 DVSASAEVQKL 101
+++A + L
Sbjct: 224 NLAAKKAMYTL 234
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTV----YRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
L + S DK + + L D + V ++GHS ++ + +S + DKT+RLW
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 91 DVSASAEVQKL 101
DV+ Q+
Sbjct: 93 DVATGETYQRF 103
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 10 GEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKH 68
G + SF+ H HIV+ A +Y L + S DK +R++D+ + + GH S +
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQR-FVGHKSDVMS 112
Query: 69 VQFFKNNTRLISCAEDKTVRLWDV 92
V K + +IS + DKT+++W +
Sbjct: 113 VDIDKKASMIISGSRDKTIKVWTI 136
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +GE F SV + + +GS DK I+++ + K T+ GH+
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLL-GHN 148
Query: 64 SGIKHVQFFKN------NTRLISCAEDKTVRLWDVSA-SAEVQKLEFGAVPNSLEISRDG 116
+ V+ N + +IS DK V+ W+++ E + + N+L S DG
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 117 TTI 119
T I
Sbjct: 209 TLI 211
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 31 DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
DS + + NDK ++ ++LN+ E + GH+S I + + T + S +D + LW
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 91 DVSASAEVQKL 101
+++A + L
Sbjct: 224 NLAAKKAMYTL 234
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTV----YRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
L + S DK + + L D + V ++GHS ++ + +S + DKT+RLW
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 91 DVSASAEVQKL 101
DV+ Q+
Sbjct: 93 DVATGETYQRF 103
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 10 GEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKH 68
G + SF+ H HIV+ A +Y L + S DK +R++D+ + + GH S +
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQR-FVGHKSDVMS 112
Query: 69 VQFFKNNTRLISCAEDKTVRLWDV 92
V K + +IS + DKT+++W +
Sbjct: 113 VDIDKKASMIISGSRDKTIKVWTI 136
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +GE F SV + + +GS DK I+++ + K T+ GH+
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLL-GHN 148
Query: 64 SGIKHVQFFKN------NTRLISCAEDKTVRLWDVSA-SAEVQKLEFGAVPNSLEISRDG 116
+ V+ N + +IS DK V+ W+++ E + + N+L S DG
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 117 TTI 119
T I
Sbjct: 209 TLI 211
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 31 DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
DS + + NDK ++ ++LN+ E + GH+S I + + T + S +D + LW
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 91 DVSASAEVQKL 101
+++A + L
Sbjct: 224 NLAAKKAMYTL 234
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTV----YRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
L + S DK + + L D + V ++GHS ++ + +S + DKT+RLW
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 91 DVSASAEVQKL 101
DV+ Q+
Sbjct: 93 DVATGETYQRF 103
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 10 GEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKH 68
G + SF+ H HIV+ A +Y L + S DK +R++D+ + + GH S +
Sbjct: 49 GVPVRSFKGHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQR-FVGHKSDVMS 106
Query: 69 VQFFKNNTRLISCAEDKTVRLWDV 92
V K + +IS + DKT+++W +
Sbjct: 107 VDIDKKASMIISGSRDKTIKVWTI 130
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +GE F SV + + +GS DK I+++ + K T+ GH+
Sbjct: 85 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLL-GHN 142
Query: 64 SGIKHVQFFKN------NTRLISCAEDKTVRLWDVSA-SAEVQKLEFGAVPNSLEISRDG 116
+ V+ N + +IS DK V+ W+++ E + + N+L S DG
Sbjct: 143 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 202
Query: 117 TTI 119
T I
Sbjct: 203 TLI 205
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 31 DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
DS + + NDK ++ ++LN+ E + GH+S I + + T + S +D + LW
Sbjct: 159 DSVTIISAGNDKMVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
Query: 91 DVSASAEVQKL 101
+++A + L
Sbjct: 218 NLAAKKAMYTL 228
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTV----YRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
L + S DK + + L D + V ++GHS ++ + +S + DKT+RLW
Sbjct: 27 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 86
Query: 91 DVSASAEVQKL 101
DV+ Q+
Sbjct: 87 DVATGETYQRF 97
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 10 GEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKH 68
G + SF+ H HIV+ A +Y L + S DK +R++D+ + + GH S +
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQR-FVGHKSDVMS 112
Query: 69 VQFFKNNTRLISCAEDKTVRLWDV 92
V K + +IS + DKT+++W +
Sbjct: 113 VDIDKKASMIISGSRDKTIKVWTI 136
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +GE F SV + + +GS DK I+++ + K T+ GH+
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLL-GHN 148
Query: 64 SGIKHVQFFKN------NTRLISCAEDKTVRLWDVSA-SAEVQKLEFGAVPNSLEISRDG 116
+ V+ N + +IS DK V+ W+++ E + + N+L S DG
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 117 TTI 119
T I
Sbjct: 209 TLI 211
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 31 DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
DS + + NDK ++ ++LN+ E + GH+S I + + T + S +D + LW
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 91 DVSASAEVQKL 101
+++A + L
Sbjct: 224 NLAAKKAMYTL 234
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTV----YRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
L + S DK + + L D + V ++GHS ++ + +S + DKT+RLW
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 91 DVSASAEVQKL 101
DV+ Q+
Sbjct: 93 DVATGETYQRF 103
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 10 GEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKH 68
G + SF+ H HIV+ A +Y L + S DK +R++D+ + + GH S +
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQR-FVGHKSDVXS 112
Query: 69 VQFFKNNTRLISCAEDKTVRLWDV 92
V K + +IS + DKT+++W +
Sbjct: 113 VDIDKKASXIISGSRDKTIKVWTI 136
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +GE F SV + + +GS DK I+++ + K T+ GH+
Sbjct: 91 LWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI-KGQCLATLL-GHN 148
Query: 64 SGIKHVQFFKN------NTRLISCAEDKTVRLWDVSA-SAEVQKLEFGAVPNSLEISRDG 116
+ V+ N + +IS DK V+ W+++ E + + N+L S DG
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 117 TTI 119
T I
Sbjct: 209 TLI 211
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 31 DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
DS + + NDK ++ ++LN+ E + GH+S I + + T + S +D + LW
Sbjct: 165 DSVTIISAGNDKXVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223
Query: 91 DVSA 94
+++A
Sbjct: 224 NLAA 227
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTV----YRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
L + S DK + + L D + V ++GHS ++ + +S + DKT+RLW
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 91 DVSASAEVQKL 101
DV+ Q+
Sbjct: 93 DVATGETYQRF 103
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFF--KNN 75
H H V D A+G D+ ++++ L + T+ G G+ +V ++ +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK 198
Query: 76 TRLISCAEDKTVRLWDVSASAEVQKLE 102
+I+ ++D T+++WD + V LE
Sbjct: 199 PYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 31 DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
D + T S+D I+I+D T+ GH S + F +IS +ED T+++W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 91 DVSASAEVQK 100
+ S++ +V+K
Sbjct: 256 N-SSTYKVEK 264
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTV-YRGH 62
+W+ + E+ S Q + F + GS+D IR+++ N E V + H
Sbjct: 39 LWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--GEKVVDFEAH 96
Query: 63 SSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
I+ + ++S ++D TV+LW+
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFF--KNN 75
H H V D A+G D+ ++++ L + T+ G G+ +V ++ +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK 198
Query: 76 TRLISCAEDKTVRLWDVSASAEVQKLE 102
+I+ ++D T+++WD + V LE
Sbjct: 199 PYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 31 DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
D + T S+D I+I+D T+ GH S + F +IS +ED T+++W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 91 DVSASAEVQK 100
+ S++ +V+K
Sbjct: 256 N-SSTYKVEK 264
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTV-YRGH 62
+W+ + E+ S Q + F + GS+D IR+++ N E V + H
Sbjct: 39 LWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--GEKVVDFEAH 96
Query: 63 SSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
I+ + ++S ++D TV+LW+
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFF--KNN 75
H H V D A+G D+ ++++ L + T+ G G+ +V ++ +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK 198
Query: 76 TRLISCAEDKTVRLWDVSASAEVQKLE 102
+I+ ++D T+++WD + V LE
Sbjct: 199 PYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 31 DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
D + T S+D I+I+D T+ GH S + F +IS +ED T+++W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 91 DVSASAEVQK 100
+ S++ +V+K
Sbjct: 256 N-SSTYKVEK 264
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTV-YRGH 62
+W+ + E+ S Q + F + GS+D IR+++ N E V + H
Sbjct: 39 LWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--GEKVVDFEAH 96
Query: 63 SSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
I+ + ++S ++D TV+LW+
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFF--KNN 75
H H V D A+G D+ ++++ L + T+ G G+ +V ++ +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK 198
Query: 76 TRLISCAEDKTVRLWDVSASAEVQKLE 102
+I+ ++D T+++WD + V LE
Sbjct: 199 PYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 31 DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
D + T S+D I+I+D T+ GH S + F +IS +ED T+++W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 91 DVSASAEVQK 100
+ S++ +V+K
Sbjct: 256 N-SSTYKVEK 264
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTV-YRGH 62
+W+ + E+ S Q + F + GS+D IR+++ N E V + H
Sbjct: 39 IWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--GEKVVDFEAH 96
Query: 63 SSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
I+ + ++S ++D TV+LW+
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVY--RG 61
VWD +G +H+ + S + + L +G+ D ++I+D+ T+
Sbjct: 303 VWDVETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVKIWDIKTGQCLQTLQGPNK 360
Query: 62 HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
H S + +QF KN +I+ ++D TV+LWD+ ++ L
Sbjct: 361 HQSAVTCLQFNKNF--VITSSDDGTVKLWDLKTGEFIRNL 398
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR 60
M VWD + LH+ Q S+ F D + +GS D +IR++D+ + T+
Sbjct: 260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT- 316
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE 102
GH S ++ K+N L+S D TV++WD+ +Q L+
Sbjct: 317 GHQSLTSGMEL-KDNI-LVSGNADSTVKIWDIKTGQCLQTLQ 356
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 4 VWDAVSGEELHSF-QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH 62
VW AV+G+ L + H V SS + +GS D+ +++++ + T+Y GH
Sbjct: 143 VWSAVTGKCLRTLVGHTGGVWSS---QMRDNIIISGSTDRTLKVWNAETGECIHTLY-GH 198
Query: 63 SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTI 119
+S ++ + + R++S + D T+R+WD+ + L G V + DG +
Sbjct: 199 TSTVRCMHLHEK--RVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQYDGRRV 252
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 25 SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED 84
S+ A D+ +G+ D + +++D+ + T + GH S I + FF N + ++D
Sbjct: 200 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDD 258
Query: 85 KTVRLWDVSASAEVQ 99
T RL+D+ A E+
Sbjct: 259 ATCRLFDLRADQELM 273
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 25 SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED 84
S+ A D+ +G+ D + +++D+ + T + GH S I + FF N + ++D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDD 247
Query: 85 KTVRLWDVSASAEVQ 99
T RL+D+ A E+
Sbjct: 248 ATCRLFDLRADQELM 262
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 25 SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED 84
S+ A D+ +G+ D + +++D+ + T + GH S I + FF N + ++D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDD 247
Query: 85 KTVRLWDVSASAEVQ 99
T RL+D+ A E+
Sbjct: 248 ATCRLFDLRADQELM 262
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 25 SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED 84
S+ A D+ +G+ D + +++D+ + T + GH S I + FF N + ++D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDD 247
Query: 85 KTVRLWDVSASAEVQ 99
T RL+D+ A E+
Sbjct: 248 ATCRLFDLRADQELM 262
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 25 SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED 84
S+ A D+ +G+ D + +++D+ + T + GH S I + FF N + ++D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDD 247
Query: 85 KTVRLWDVSASAEVQ 99
T RL+D+ A E+
Sbjct: 248 ATCRLFDLRADQELM 262
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 33 YRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN-TRLISCAEDKTVRLWD 91
+ LATGS DK + ++DL + + H I VQ+ +N T L S D+ + +WD
Sbjct: 291 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
Query: 92 VSASAEVQKLE 102
+S E Q E
Sbjct: 351 LSKIGEEQSTE 361
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 33 YRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN-TRLISCAEDKTVRLWD 91
+ LATGS DK + ++DL + + H I VQ+ +N T L S D+ + +WD
Sbjct: 293 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
Query: 92 VSASAEVQKLE 102
+S E Q E
Sbjct: 353 LSKIGEEQSTE 363
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 33 YRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN-TRLISCAEDKTVRLWD 91
+ LATGS DK + ++DL + + H I VQ+ +N T L S D+ + +WD
Sbjct: 295 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
Query: 92 VSASAEVQKLE 102
+S E Q E
Sbjct: 355 LSKIGEEQSTE 365
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR 77
H H V+ V ++D +GS D +R++DL + GH+ + V F +N +
Sbjct: 429 HSHFVEDVV-LSSDGQFALSGSWDGELRLWDL-AAGVSTRRFVGHTKDVLSVAFSLDNRQ 486
Query: 78 LISCAEDKTVRLWD 91
++S + D+T++LW+
Sbjct: 487 IVSASRDRTIKLWN 500
Score = 32.3 bits (72), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 24 SSVHFATDSYR--LATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISC 81
S V F+ ++ + + + S DK +++++L+ T+ GH+ + V + + S
Sbjct: 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL-AGHTGYVSTVAVSPDGSLCASG 579
Query: 82 AEDKTVRLWDVSASAEVQKLEFGAVPNSL 110
+D V LWD++ ++ LE +V ++L
Sbjct: 580 GKDGVVLLWDLAEGKKLYSLEANSVIHAL 608
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTVYR----GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
+ + S DK+I ++ L K D V + GHS ++ V + +S + D +RLW
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 91 DVSASAEVQKL 101
D++A ++
Sbjct: 458 DLAAGVSTRRF 468
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 33 YRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN-TRLISCAEDKTVRLWD 91
+ LATGS DK + ++DL + + H I VQ+ +N T L S D+ + +WD
Sbjct: 287 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
Query: 92 VSASAEVQKLE 102
+S E Q E
Sbjct: 347 LSKIGEEQSPE 357
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTV---------YRGHSSGIKHVQFFKN-NTRLISCAED 84
+AT + ++ ++D K ++P RGH + + N + L+S ++D
Sbjct: 140 IATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDD 199
Query: 85 KTVRLWDVSASAEVQKL 101
T+ LWD+SA + K+
Sbjct: 200 HTICLWDISAVPKEGKV 216
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 27 HFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK 85
H A D + SND I++ D + D T Y GH S + ++ N ++SC ED+
Sbjct: 189 HLAVVDDGHFISCSNDGLIKLVDXHTGDVLRT-YEGHESFVYCIKLLPNGD-IVSCGEDR 246
Query: 86 TVRLW 90
TVR+W
Sbjct: 247 TVRIW 251
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 35 LATGSNDKNIRIYDLNKPD-AEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
LA+ S D +++Y + D GH S + + F + RL SC++D+TVR+W
Sbjct: 165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 35 LATGSNDKNIRIYDLNKPDAEP-TVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
LA+ S D I+ N+ D E T GH + +K V + + L +C+ DK+V +W+V
Sbjct: 76 LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135
Query: 94 ASAEVQ 99
E +
Sbjct: 136 EEDEYE 141
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEP--TVYRGHSSGIKHVQFFKNN 75
H + VKS V +A LAT S DK++ ++++++ D +V H+ +KHV + +
Sbjct: 104 HENEVKS-VAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ 162
Query: 76 TRLISCAEDKTVRL 89
L S + D TV+L
Sbjct: 163 ELLASASYDDTVKL 176
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 33 YRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN-TRLISCAEDKTVRLWD 91
+ LATGS DK + ++DL + + H I V + +N T L S D+ + +WD
Sbjct: 289 FILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Query: 92 VSASAEVQKLE 102
+S E Q E
Sbjct: 349 LSKIGEEQSAE 359
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 33 YRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN-TRLISCAEDKTVRLWD 91
+ LATGS DK + ++DL + + H I V + +N T L S D+ + +WD
Sbjct: 289 FILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Query: 92 VSASAEVQKLE 102
+S E Q E
Sbjct: 349 LSKIGEEQSAE 359
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 28 FATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCA---ED 84
+ +D +LA+G ND ++I+D + T H++ +K V + + L++ D
Sbjct: 225 WRSDGLQLASGGNDNVVQIWDARSSIPKFT-KTNHNAAVKAVAWCPWQSNLLATGGGTMD 283
Query: 85 KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG 124
K + W+ + A V ++ G+ SL S I THG
Sbjct: 284 KQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHG 323
Score = 29.6 bits (65), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSA 94
L++GS I +D+ + + +GHSS + + + + +L S D V++WD +
Sbjct: 189 LSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248
Query: 95 S 95
S
Sbjct: 249 S 249
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 16 FQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK-N 74
++H IV S+V + + +GS D I+++DL + + YR H++ + V
Sbjct: 124 YEHDDIV-STVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLSSYRAHAAQVTCVAASPHK 181
Query: 75 NTRLISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSL 110
++ +SC+ED + LWD ++ G +P SL
Sbjct: 182 DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSL 220
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 25 SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED 84
++ + DS + +D NI ++DL+ ++GH+ G + + T+L + D
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204
Query: 85 KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV 121
TVR WD+ ++Q+ +F + SL G + V
Sbjct: 205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV 241
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 3/120 (2%)
Query: 5 WDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSS 64
WD G +L + S + T + LA G N+ + +NKPD H S
Sbjct: 210 WDLREGRQLQQHDFTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVNKPDKYQ--LHLHES 266
Query: 65 GIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG 124
+ ++F +S +D + W A + + + + S +IS D I G
Sbjct: 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG 326
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNK 51
VWD + + FQ S + + D +L TG D +R +DL +
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE 214
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 10/72 (13%)
Query: 56 PTVYRGHSSGIKHVQFFKNNTRLISCAE-DKTVRLWDV-SASAEVQKLE----FGAVPNS 109
P +Y S I++++ + +RLI+CA+ DK++ ++DV S V KL F PN+
Sbjct: 99 PPIY----SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNA 154
Query: 110 LEISRDGTTITV 121
+ I+ D TT+ +
Sbjct: 155 ISIAEDDTTVII 166
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 31 DSYRLATGSNDKNIRIYD-LNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRL 89
D+Y + TG++DK IR+YD +NK GH G+ +++ L+S + D+TVR+
Sbjct: 132 DNY-VITGADDKXIRVYDSINKKFLLQL--SGHDGGVWALKYAHGGI-LVSGSTDRTVRV 187
Query: 90 WDV 92
WD+
Sbjct: 188 WDI 190
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQF--FKNNTRLISCAEDKTVRLWDV 92
L +GS D+ +R++D+ K V+ GH+S ++ + +KN +++ + D T+ +W +
Sbjct: 176 LVSGSTDRTVRVWDI-KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 93 SASAEV 98
+ V
Sbjct: 235 PKESSV 240
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 4 VWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH 62
VWD + L+ H + S++ + + R + S D IRI+DL + T+ +GH
Sbjct: 294 VWDVAQXKCLYILSGHTDRIYSTI-YDHERKRCISASXDTTIRIWDLENGELXYTL-QGH 351
Query: 63 SSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
++ + ++ ++ L+S A D ++R WD
Sbjct: 352 TALVGLLRL--SDKFLVSAAADGSIRGWD 378
Score = 29.6 bits (65), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDV 92
+ +GS D + ++D+ + + GH+ I + R IS + D T+R+WD+
Sbjct: 283 VVSGSYDNTLIVWDVAQXKC-LYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 31 DSYRLATGSNDKNIRIYD-LNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRL 89
D+Y + TG++DK IR+YD +NK GH G+ +++ L+S + D+TVR+
Sbjct: 132 DNY-VITGADDKMIRVYDSINKKFLLQL--SGHDGGVWALKYAHGGI-LVSGSTDRTVRV 187
Query: 90 WDV 92
WD+
Sbjct: 188 WDI 190
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQF--FKNNTRLISCAEDKTVRLWDV 92
L +GS D+ +R++D+ K V+ GH+S ++ + +KN +++ + D T+ +W +
Sbjct: 176 LVSGSTDRTVRVWDI-KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 93 SASAEV 98
+ V
Sbjct: 235 PKESSV 240
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 4 VWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH 62
VWD + L+ H + S++ + + R + S D IRI+DL + T+ +GH
Sbjct: 294 VWDVAQMKCLYILSGHTDRIYSTI-YDHERKRCISASMDTTIRIWDLENGELMYTL-QGH 351
Query: 63 SSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
++ + ++ ++ L+S A D ++R WD
Sbjct: 352 TALVGLLRL--SDKFLVSAAADGSIRGWD 378
Score = 29.6 bits (65), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSA 94
+ +GS D + ++D+ + + GH+ I + R IS + D T+R+WD+
Sbjct: 283 VVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341
Query: 95 SAEVQKLE 102
+ L+
Sbjct: 342 GELMYTLQ 349
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR-LISCAEDKTVRLWDVS 93
+ATG D + I+D+ + ++ + H + + V F +N L +C+ED ++ WD S
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDAS 311
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 4 VWDAVSGEELHSFQHPH-IVKSSVHFATD------SYRLATGSNDKNIRIYDLNKPDAEP 56
+W E+ F PH + HF +D + + S DK +R++DL
Sbjct: 53 IWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG---- 108
Query: 57 TVYR---GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE 102
T Y+ GH S + V F +N +++S ++ ++LW++ + E
Sbjct: 109 TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAE 157
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 59 YRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDV 92
++ H S + H+ N + + +DK + +WD+
Sbjct: 209 FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDV 92
+ATGS D NI IY + +P H G+ ++ ++ + L+S D ++ W+V
Sbjct: 556 VATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNL-LWETPSTLVSSGADACIKRWNV 612
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 26 VHFATDS--YRLATGSNDKNIRIYDLN--------KPDAEPTVYRGHSSGIKHVQFFKNN 75
V F+ DS + + GS D+ I +D + D EP GI + + ++
Sbjct: 212 VEFSPDSGEFVITVGS-DRKISCFDGKSGEFLKYIEDDQEPV-----QGGIFALSWL-DS 264
Query: 76 TRLISCAEDKTVRLWDVSASAEVQK 100
+ + D T+R+WDV+ S VQK
Sbjct: 265 QKFATVGADATIRVWDVTTSKCVQK 289
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
S + F + L + S+D +RI+ +++ Y GHS I + ++ ++ISC+
Sbjct: 251 SVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY-GHSQSIVSASWVGDD-KVISCSM 308
Query: 84 DKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTITV 121
D +VRLW + + + VP + IS+DG V
Sbjct: 309 DGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAV 347
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 19/103 (18%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNK-----PDAEPTV 58
+W+ +SG + F+ SS++ S GS ++ D +K P V
Sbjct: 175 LWNVISGTVMQHFELKETGGSSINAENHS---GDGSLGVDVEWVDDDKFVIPGPKGAIFV 231
Query: 59 YR-----------GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
Y+ GH I ++F N L+S ++D T+R+W
Sbjct: 232 YQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 18 HPHIVKSSVHFATDSYRLATGS-NDKNIRIYDLNKPDAE-PTVYRGHSSGIKHVQF-FKN 74
HP K+S AT ATGS ND +I I+DL + T+ +GH GI + + ++
Sbjct: 223 HP---KNSTRVAT-----ATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD 274
Query: 75 NTRLISCAEDKTVRLWDVSASAEVQKL 101
L+S D TV LW+ ++ ++ +
Sbjct: 275 EHLLLSSGRDNTVLLWNPESAEQLSQF 301
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 18/105 (17%)
Query: 18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR 77
H VK+ A LA+G N+ I I+D+NK P+ Y + G Q +
Sbjct: 112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG----QSMSSVDE 167
Query: 78 LISCAEDKTV-------------RLWDVSASAEVQKLEFGAVPNS 109
+IS A ++++ +WD+ A EV L + + PNS
Sbjct: 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTS-PNS 211
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDV 92
+ATGS D NI IY + +P H G+ ++ ++ + L+S D ++ W+V
Sbjct: 556 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNL-LWETPSTLVSSGADACIKRWNV 612
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 26 VHFATDS--YRLATGSNDKNIRIYDLN--------KPDAEPTVYRGHSSGIKHVQFFKNN 75
V F+ DS + + GS D+ I +D + D EP GI + + ++
Sbjct: 212 VEFSPDSGEFVITVGS-DRKISCFDGKSGEFLKYIEDDQEPV-----QGGIFALSWL-DS 264
Query: 76 TRLISCAEDKTVRLWDVSASAEVQK 100
+ + D T+R+WDV+ S VQK
Sbjct: 265 QKFATVGADATIRVWDVTTSKCVQK 289
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 4 VWDAVSGEELHSFQ---HPHIVKSSVHFAT--DSYRLATGSNDKNIRIYDLNKPDAEPTV 58
VW+ V GE +H+ H V S V F+ D+ + +G D ++++DL T
Sbjct: 135 VWN-VKGECMHTLSRGAHTDWV-SCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLV-TD 191
Query: 59 YRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEIS 113
+GH++ + V + + S +D RLWD++ + ++ GA N + S
Sbjct: 192 LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFS 246
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
S V + + + S D ++R+++L + + GH+ + V F +N +++S
Sbjct: 71 SDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYK-FLGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 84 DKTVRLWDV 92
D +R+W+V
Sbjct: 130 DNALRVWNV 138
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 17 QHPHIVKSSVHFATDSYRLATGSN-DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN 75
Q P V + D L+ G N D++ PD GHS+ + V N
Sbjct: 23 QTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRR---LEGHSAFVSDVALSNNG 79
Query: 76 TRLISCAEDKTVRLWDV 92
+S + D ++RLW++
Sbjct: 80 NFAVSASWDHSLRLWNL 96
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 34 RLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
R G+ + +I++ D N + + + + H S I ++FF + LIS ++D +++W V
Sbjct: 108 RFILGTTEGDIKVLDSNF-NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 166
Query: 94 ASAEVQKL 101
+ + L
Sbjct: 167 DGSNPRTL 174
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
+ + F L + S D ++I+ + K + P GH + + + ++S +
Sbjct: 140 TKLKFFPSGEALISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL 198
Query: 84 DKTVRLWDVSASAEV 98
D T+RLW+ +
Sbjct: 199 DGTIRLWECGTGTTI 213
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.5 bits (75), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 34 RLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
R G+ + +I++ D N + + + + H S I ++FF + LIS ++D +++W V
Sbjct: 111 RFILGTTEGDIKVLDSNF-NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 169
Query: 94 ASAEVQKL 101
+ + L
Sbjct: 170 DGSNPRTL 177
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
+ + F L + S D ++I+ + K + P GH + + + ++S +
Sbjct: 143 TKLKFFPSGEALISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL 201
Query: 84 DKTVRLWDVSASAEV 98
D T+RLW+ +
Sbjct: 202 DGTIRLWECGTGTTI 216
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 32.7 bits (73), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK--NNTRLISCAE 83
V ++ D ++ T S DK +++DL+ A H + +K + + K N + +++ +
Sbjct: 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQA--IQIAQHDAPVKTIHWIKAPNYSCVMTGSW 149
Query: 84 DKTVRLWDVSASAEVQKLEF 103
DKT++ WD +S + L+
Sbjct: 150 DKTLKFWDTRSSNPMMVLQL 169
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 35 LATGSNDKNIRIYDLNKPDAE-PTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
L GS ++R +++ P + H+ + V + + +++ + + DKT ++WD+S
Sbjct: 57 LIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS 116
Query: 94 ASAEVQ 99
++ +Q
Sbjct: 117 SNQAIQ 122
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTV---YRGHSSGIKHVQFFKNNT-RLISCAE-DKTVRL 89
+AT S+D++I+++ L+K + + +R H S I + + R+I+ A DKTV+L
Sbjct: 26 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85
Query: 90 WDVSASAE 97
W+ E
Sbjct: 86 WEEDPDQE 93
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTV---YRGHSSGIKHVQFFKNNT-RLISCAE-DKTVRL 89
+AT S+D++I+++ L+K + + +R H S I + + R+I+ A DKTV+L
Sbjct: 24 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 83
Query: 90 WDVSASAE 97
W+ E
Sbjct: 84 WEEDPDQE 91
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTV---YRGHSSGIKHVQFFKNN-TRLISCAE-DKTVRL 89
+AT S+D++I+++ L+K + + +R H S I + + R+I+ A DKTV+L
Sbjct: 26 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85
Query: 90 WDVSASAE 97
W+ E
Sbjct: 86 WEEDPDQE 93
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 34 RLATGSNDKNIRIYDL-NKPDAEPTVYRGHSSGIKHVQFF--KNNTRLISCAEDKTVRLW 90
RLAT S+D++++I+D+ N RGH + V + L SC+ D+ V +W
Sbjct: 27 RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 57 TVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEV 98
TV H I Q TRL +C+ D++V+++DV ++
Sbjct: 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI 48
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 34 RLATGSNDKNIRIYDLNKPDAEPT-VYRGHSSGIKHVQFF--KNNTRLISCAEDKTVRLW 90
RLAT S+DK I+I+++ + GH + V + K T L SC+ D V +W
Sbjct: 23 RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 29.3 bits (64), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 34 RLATGSNDKNIRIYDLNKPDAEPT-VYRGHSSGIKHVQFF--KNNTRLISCAEDKTVRLW 90
RLAT S+DK I+I+++ + GH + V + K T L SC+ D V +W
Sbjct: 25 RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 26 VHFATDSY---RLATGSNDKNIRIYDLNKPDAEPT-VYRGHSSGIKHVQFF--KNNTRLI 79
+H A Y R+AT S+DK I+I+++ + GH + V + K T L
Sbjct: 12 IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILA 71
Query: 80 SCAEDKTVRLW 90
SC+ D V +W
Sbjct: 72 SCSYDGKVMIW 82
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 34 RLATGSNDKNIRIYDLNKPDAEPT-VYRGHSSGIKHVQFF--KNNTRLISCAEDKTVRLW 90
RLAT S+DK I+I+++ + GH + V + K T L SC+ D V +W
Sbjct: 23 RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82
>pdb|3LRV|A Chain A, The Prp19 Wd40 Domain Contains A Conserved Protein
Interaction Region Essential For Its Function
Length = 343
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 20 HIVKSSVHFAT-----DSYRLATGSNDKNIRIYDLNKPDAEPTVYR-GHSSGIKHVQFFK 73
H KS V +++ DS LA S D + +Y+L+ PD + + + IK V+F
Sbjct: 165 HSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD 224
Query: 74 NNT-RLISCAEDKTVRLWDV 92
N ++ C D+TV +D+
Sbjct: 225 NGYWMVVEC--DQTVVCFDL 242
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 29/63 (46%)
Query: 28 FATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTV 87
+ +SY L++GS +I +D+ + GHS + +++ + L S D V
Sbjct: 115 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 174
Query: 88 RLW 90
+W
Sbjct: 175 NVW 177
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 49/136 (36%)
Query: 4 VWDAVSGE----ELHSF-QHPHIVKSSVHFATDSYRLATG--SNDKNIRIYD------LN 50
VW + GE L +F QH VK+ S LATG ++D++IRI++ L+
Sbjct: 176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 235
Query: 51 KPDAE-------------------------------PTV-----YRGHSSGIKHVQFFKN 74
DA PT+ +GH+S + + +
Sbjct: 236 AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 295
Query: 75 NTRLISCAEDKTVRLW 90
+ S A D+T+RLW
Sbjct: 296 GATVASAAADETLRLW 311
>pdb|2FHB|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltose
pdb|2FHC|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotriose
pdb|2FHF|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotetraose
Length = 1083
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR 77
HP K + TD Y + +N + ++ DLN +P + G + + H Q K +
Sbjct: 365 HPQSRKVEQYEVTDPYAHSLSTNSEYSQVVDLNDSALKPEGWDGLT--MPHAQKTKADLA 422
Query: 78 LISCAED--KTVRLWDVSASAEVQ 99
++ E + + WD + AE++
Sbjct: 423 KMTIHESHIRDLSAWDQTVPAELR 446
>pdb|2FH8|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Isomaltose
Length = 922
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR 77
HP K + TD Y + +N + ++ DLN +P + G + + H Q K +
Sbjct: 204 HPQSRKVEQYEVTDPYAHSLSTNSEYSQVVDLNDSALKPEGWDGLT--MPHAQKTKADLA 261
Query: 78 LISCAED--KTVRLWDVSASAEVQ 99
++ E + + WD + AE++
Sbjct: 262 KMTIHESHIRDLSAWDQTVPAELR 285
>pdb|2FH6|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Glucose
Length = 920
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR 77
HP K + TD Y + +N + ++ DLN +P + G + + H Q K +
Sbjct: 202 HPQSRKVEQYEVTDPYAHSLSTNSEYSQVVDLNDSALKPEGWDGLT--MPHAQKTKADLA 259
Query: 78 LISCAED--KTVRLWDVSASAEVQ 99
++ E + + WD + AE++
Sbjct: 260 KMTIHESHIRDLSAWDQTVPAELR 283
>pdb|2FGZ|A Chain A, Crystal Structure Analysis Of Apo Pullulanase From
Klebsiella Pneumoniae
Length = 926
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR 77
HP K + TD Y + +N + ++ DLN +P + G + + H Q K +
Sbjct: 208 HPQSRKVEQYEVTDPYAHSLSTNSEYSQVVDLNDSALKPEGWDGLT--MPHAQKTKADLA 265
Query: 78 LISCAED--KTVRLWDVSASAEVQ 99
++ E + + WD + AE++
Sbjct: 266 KMTIHESHIRDLSAWDQTVPAELR 289
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 29/63 (46%)
Query: 28 FATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTV 87
+ +SY L++GS +I +D+ + GHS + +++ + L S D V
Sbjct: 195 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 254
Query: 88 RLW 90
+W
Sbjct: 255 NVW 257
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 49/136 (36%)
Query: 4 VWDAVSGE----ELHSF-QHPHIVKSSVHFATDSYRLATG--SNDKNIRIYD------LN 50
VW + GE L +F QH VK+ S LATG ++D++IRI++ L+
Sbjct: 256 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 315
Query: 51 KPDAE-------------------------------PTV-----YRGHSSGIKHVQFFKN 74
DA PT+ +GH+S + + +
Sbjct: 316 AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 375
Query: 75 NTRLISCAEDKTVRLW 90
+ S A D+T+RLW
Sbjct: 376 GATVASAAADETLRLW 391
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT------RLISCAEDKTVR 88
LATG N+ I++L P+ +GH I + +++ + D TV+
Sbjct: 83 LATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142
Query: 89 LWD 91
+WD
Sbjct: 143 VWD 145
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 29/63 (46%)
Query: 28 FATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTV 87
+ +SY L++GS +I +D+ + GHS + +++ + L S D V
Sbjct: 206 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 265
Query: 88 RLW 90
+W
Sbjct: 266 NVW 268
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 49/136 (36%)
Query: 4 VWDAVSGE----ELHSF-QHPHIVKSSVHFATDSYRLATG--SNDKNIRIYD------LN 50
VW + GE L +F QH VK+ S LATG ++D++IRI++ L+
Sbjct: 267 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 326
Query: 51 KPDAE-------------------------------PTV-----YRGHSSGIKHVQFFKN 74
DA PT+ +GH+S + + +
Sbjct: 327 AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 386
Query: 75 NTRLISCAEDKTVRLW 90
+ S A D+T+RLW
Sbjct: 387 GATVASAAADETLRLW 402
>pdb|2I5K|A Chain A, Crystal Structure Of Ugp1p
pdb|2I5K|B Chain B, Crystal Structure Of Ugp1p
Length = 488
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 67 KHVQFFKNNTRLISCAEDKT-VRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
+H+ FKN + + + + L V E LE +PN I+RDG I V
Sbjct: 291 EHIDEFKNIRKFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQ 348
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 45 RIYDLNKPDAEPTVYRG---HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
RI L+ P G HSS + + F + L S D +R WDV + L
Sbjct: 270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 329
Query: 102 EFGAVPNSLEISRD 115
+ +EI D
Sbjct: 330 NMHC--DDIEIEED 341
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 45 RIYDLNKPDAEPTVYRG---HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
RI L+ P G HSS + + F + L S D +R WDV + L
Sbjct: 280 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 339
Query: 102 EFGAVPNSLEISRD 115
+ +EI D
Sbjct: 340 NMHC--DDIEIEED 351
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
GH + V++ K L SC++D + +W
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVW 59
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
Query: 21 IVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS 80
++++ + LA + D I D++ E +GIK+V+F + N +
Sbjct: 41 VLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP 100
Query: 81 CAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT---HGSC 126
+ ++ +Q E A+ + ++ + G TITV HGSC
Sbjct: 101 FEDSSFDHIFVCFVLEHLQSPE-EALKSLKKVLKPGGTITVIEGDHGSC 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,175,646
Number of Sequences: 62578
Number of extensions: 154166
Number of successful extensions: 826
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 356
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)