RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6446
(134 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 65.5 bits (158), Expect = 3e-14
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+WD +G L + V F + + + ++DK +R++D T H
Sbjct: 231 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT-LNAHE 289
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWD 91
+ + F K +++ + D+TV++W+
Sbjct: 290 HFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
Score = 56.7 bits (135), Expect = 4e-11
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 14 HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK 73
+S + L +GS DK I+++D++ T GH + ++ V F
Sbjct: 199 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT-LVGHDNWVRGVLFHS 257
Query: 74 NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTI 119
++SCA+DKT+R+WD ++ L SL+ + +
Sbjct: 258 GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304
Score = 44.0 bits (102), Expect = 1e-06
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 55 EPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE 102
E GH S + V F + ++S +ED T+++WD + L+
Sbjct: 9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK 56
Score = 39.3 bits (90), Expect = 4e-05
Identities = 26/153 (16%), Positives = 54/153 (35%), Gaps = 23/153 (15%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
+W+ +G + +F V D +A+ SND+ +R++ + + + R H
Sbjct: 127 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE-LREHR 185
Query: 64 SGIKHVQF--------------------FKNNTRLISCAEDKTVRLWDVSASAEVQKLE- 102
++ + + K L+S + DKT+++WDVS + L
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245
Query: 103 FGAVPNSLEISRDGTTI-TVTHGSCVTFLDANS 134
+ G I + + D +
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 278
Score = 37.8 bits (86), Expect = 2e-04
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 10 GEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKH 68
E ++ H V + V F + + S D I+++D D E T +GH+ ++
Sbjct: 7 PPEKYALSGHRSPV-TRVIFHPVFSVMVSASEDATIKVWDYETGDFERT-LKGHTDSVQD 64
Query: 69 VQFFKNN 75
+ F +
Sbjct: 65 ISFDHSG 71
Score = 37.8 bits (86), Expect = 2e-04
Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 14 HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK 73
+ SSV + + + S DK I+++++ T + GH ++ V+ +
Sbjct: 95 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT-FTGHREWVRMVRPNQ 153
Query: 74 NNTRLISCAEDKTVRLWDVSASAEVQKL-EFGAVPNSLEISRDGTTITVTHGSCVTFLDA 132
+ T + SC+ D+TVR+W V+ +L E V + + + + +++ + +
Sbjct: 154 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 213
Query: 133 NS 134
Sbjct: 214 GK 215
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 63.6 bits (153), Expect = 1e-13
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 14 HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK 73
+S + +SV F+ L G +D N ++D K D V GH + + +
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTD 322
Query: 74 NNTRLISCAEDKTVRLWD 91
+ + + + D +++W+
Sbjct: 323 DGMAVATGSWDSFLKIWN 340
Score = 62.4 bits (150), Expect = 4e-13
Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 4/119 (3%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRI-YDLNKPDAEPTVYRGH 62
+WD G +F +++ F + ATGS+D R+ + +
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 63 SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEISRDGTTI 119
GI V F K+ L++ +D +WD + L V + L ++ DG +
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV-SCLGVTDDGMAV 327
Score = 42.8 bits (99), Expect = 3e-06
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 4 VWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYD 48
VWDA+ + H + V S + D +ATGS D ++I++
Sbjct: 296 VWDALKADRAGVLAGHDNRV-SCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 34.3 bits (77), Expect = 0.003
Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 58 VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDG 116
RGH + I + + ++ L+S ++D + +WD + +V + + + + G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 117 TTITVTHGSC 126
+
Sbjct: 110 NYVACGGLDN 119
Score = 31.6 bits (70), Expect = 0.019
Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR 77
H + ++H+ TDS L + S D + I+D + SS + + +
Sbjct: 54 HLAKI-YAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA-IPLRSSWVMTCAYAPSGNY 111
Query: 78 LISCAEDKTVRLWDVS 93
+ D ++++
Sbjct: 112 VACGGLDNICSIYNLK 127
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 61.7 bits (148), Expect = 6e-13
Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Query: 14 HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK 73
+ S+ FA + D + + P SS +
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT--PYGASIFQSKESSSVLSCDISV 316
Query: 74 NNTRLISCAEDKTVRLWDV 92
++ +++ + DK +++V
Sbjct: 317 DDKYIVTGSGDKKATVYEV 335
Score = 46.3 bits (108), Expect = 2e-07
Identities = 14/90 (15%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 5 WDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTV----YR 60
++++ H +V +V + + + TG ++++D++ P + V
Sbjct: 37 GIPRHARQINTLNHGEVV-CAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCL 94
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
+ I+ + + LI E T+ +W
Sbjct: 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124
Score = 45.6 bits (106), Expect = 3e-07
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDL 49
W G + + V S + D + TGS DK +Y++
Sbjct: 291 AWRTPYGASIFQSKESSSV-LSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 44.4 bits (103), Expect = 9e-07
Identities = 12/61 (19%), Positives = 23/61 (37%)
Query: 59 YRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTT 118
H S + ++F +S +D + W A + + + + S +IS D
Sbjct: 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKY 320
Query: 119 I 119
I
Sbjct: 321 I 321
Score = 34.4 bits (77), Expect = 0.003
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 7/66 (10%)
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP------NSLEISR 114
H + V + + V++WD+S + S ++
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 115 DGTTIT 120
DG T+
Sbjct: 108 DGCTLI 113
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 371
Score = 59.9 bits (143), Expect = 3e-12
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 14 HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT-VYRGHSSGIKHVQFF 72
HSF I S + D ++A N+ + IY+ + + H+ + V +
Sbjct: 3 HSFLVEPI--SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60
Query: 73 KNNTRLISCAEDKTVRLWD 91
++ R+++C D+ +W
Sbjct: 61 PDSNRIVTCGTDRNAYVWT 79
Score = 43.7 bits (101), Expect = 1e-06
Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 6/95 (6%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
++ S SF V + R + DK A + H
Sbjct: 268 LFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG--LDSLHK 325
Query: 64 SGIKHVQFFK----NNTRLISCAEDKTVRLWDVSA 94
+ + + ++ + D + +WDV +
Sbjct: 326 NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360
Score = 34.4 bits (77), Expect = 0.003
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 66 IKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF----GAVPNSLEISRDGTTI 119
I + K+ T++ C + V +++ S + VQ E G V ++ + D I
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQV-TGVDWAPDSNRI 66
Score = 32.1 bits (71), Expect = 0.017
Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 4 VWDAVSG--EELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR 60
+++ ++H + H V + V +A DS R+ T D+N ++ L +PT+
Sbjct: 33 IYEKSGNKWVQVHELKEHNGQV-TGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI 91
Query: 61 GHSSGIKHVQFFKNNTRLISCA-EDKTVRLWDV 92
+ + N + + + + +
Sbjct: 92 LRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124
Score = 28.3 bits (61), Expect = 0.30
Identities = 7/58 (12%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDS----YRLATGSNDKNIRIYDLNKPDAE 55
+ + + H + V S + + + T D + I+D+ ++
Sbjct: 308 ASSEGSAAAGAGLDSLHKNSV-SQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 58.8 bits (140), Expect = 7e-12
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 14 HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK 73
++ K + + +ATGS D NI IY + +P H G+ ++ +
Sbjct: 209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET 268
Query: 74 NNTRLISCAEDKTVRLWDV 92
+ L+S D ++ W+V
Sbjct: 269 PS-TLVSSGADACIKRWNV 286
Score = 35.7 bits (80), Expect = 8e-04
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 58 VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
GH+ GI + LIS + D + W S
Sbjct: 8 TISGHNKGITALTV----NPLISGSYDGRIMEWSSS 39
Score = 32.2 bits (71), Expect = 0.012
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 34 RLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT 76
L +GS D I + + ++++ HS+ I + K
Sbjct: 23 PLISGSYDGRIMEWSSS------SMHQDHSNLIVSLDNSKAQE 59
Score = 31.5 bits (69), Expect = 0.027
Identities = 7/71 (9%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 59 YRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG--AVPNSLEISRDG 116
+ + + + + D + ++ V ++ K N+L
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS 270
Query: 117 TTITVTHGSCV 127
T ++ +C+
Sbjct: 271 TLVSSGADACI 281
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 55.8 bits (132), Expect = 8e-11
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 14 HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR-GHSSGIKHVQFF 72
+S+ + V ++ D+ RLATGS D ++ ++++NKP P + + H+ + +
Sbjct: 218 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW 277
Query: 73 KNNTRLISCAEDKTVRLWDVS 93
N T ++S +D ++ W+V
Sbjct: 278 LNETTIVSAGQDSNIKFWNVP 298
Score = 45.7 bits (106), Expect = 3e-07
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 58 VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG 104
V GH+ I + + L S + + WD+S +
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV 53
Score = 45.4 bits (105), Expect = 3e-07
Identities = 11/87 (12%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 10 GEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKH 68
G H + +++ + D L + + +I +D++ + H++ I
Sbjct: 2 GSIDQVRYGHNKAI-TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60
Query: 69 VQFFKNNTRLISCAEDKTVRLWDVSAS 95
++ L + + D +++ S
Sbjct: 61 IKTTSKG-DLFTVSWDDHLKVVPAGGS 86
Score = 32.6 bits (72), Expect = 0.011
Identities = 5/48 (10%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 4 VWDAVSGEELH--SFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDL 49
VW+ + + + + + + D NI+ +++
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
Score = 26.5 bits (56), Expect = 1.1
Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 68 HVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA----VPNSLEISRDGTTITVTH 123
V + +N RL + + D +V +W+++ ++ + GA NS+ + T ++
Sbjct: 229 CVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ 288
Query: 124 GSCVTFLD 131
S + F +
Sbjct: 289 DSNIKFWN 296
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 53.3 bits (126), Expect = 7e-10
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 7/94 (7%)
Query: 5 WDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSS 64
SG ++ SV + + +GS D+ + +D + + +GH +
Sbjct: 293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLMLQGHRN 351
Query: 65 GIKHVQFFK------NNTRLISCAEDKTVRLWDV 92
+ V + + D R+W
Sbjct: 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
Score = 47.5 bits (111), Expect = 7e-08
Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 19/136 (13%)
Query: 2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT---- 57
G + + + E H V SV F D + +GS D+++++++L + +
Sbjct: 237 GFLVERLDSENESGTGHKDSV-YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295
Query: 58 -------VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-------F 103
Y GH + V +N+ ++S ++D+ V WD + + L+
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355
Query: 104 GAVPNSLEISRDGTTI 119
AV N + +
Sbjct: 356 VAVANGSSLGPEYNVF 371
Score = 43.6 bits (101), Expect = 1e-06
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 5 WDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLN------KPDAEPTV 58
WD +G+ + V + D +A GS D+ +R++D + D+E
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249
Query: 59 YRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQ 99
GH + V F ++ ++S + D++V+LW++ +
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290
Score = 39.4 bits (90), Expect = 4e-05
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 4 VWDAVSGEELHSFQ-HPHIVKS-----SVHFATDSYRLATGSNDKNIRIYDLNK 51
WD SG L Q H + V S + ATGS D RI+ K
Sbjct: 334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387
Score = 32.1 bits (71), Expect = 0.013
Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 5/104 (4%)
Query: 34 RLATGSNDKNIRIYDLNKP---DAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
+ +Y+ P D E H+S + V+F + L + +KT +++
Sbjct: 30 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVY 88
Query: 91 DVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS 134
VS + V +L + N + T+ + + + + +
Sbjct: 89 RVSDGSLVARLSDDSAANK-DPENLNTSSSPSSDLYIRSVCFSP 131
Score = 30.2 bits (66), Expect = 0.073
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 24/110 (21%)
Query: 3 TVWDAVSGEEL-----HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT 57
+++ E+ S H +V V F+ D LATG +K ++Y ++
Sbjct: 41 ILYNPALPREIDVELHKSLDHTSVV-CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVAR 98
Query: 58 -----------------VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
I+ V F + L + AED+ +R+W
Sbjct: 99 LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW 148
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 52.6 bits (124), Expect = 1e-09
Identities = 13/87 (14%), Positives = 33/87 (37%)
Query: 5 WDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSS 64
V ++ + ++ D ++A+ S DK I+I+++ E T+ G
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 65 GIKHVQFFKNNTRLISCAEDKTVRLWD 91
+ + L+S + + + +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVN 309
Score = 42.6 bits (98), Expect = 4e-06
Identities = 7/66 (10%), Positives = 19/66 (28%), Gaps = 2/66 (3%)
Query: 25 SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED 84
+ ++ + ++ + + +Y HS + + S
Sbjct: 22 VLGNTPAGDKIQYCN-GTSVYTVPVGSLT-DTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79
Query: 85 KTVRLW 90
VR+W
Sbjct: 80 GNVRIW 85
Score = 36.8 bits (83), Expect = 3e-04
Identities = 5/47 (10%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 4 VWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDL 49
+W+ + + + I + L + S + I +
Sbjct: 264 IWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
Score = 36.4 bits (82), Expect = 5e-04
Identities = 13/73 (17%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 62 HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA--VPNSLEISRDGTTI 119
HS + + + + T++ S + DKT+++W+V+ + + G L I +
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 296
Query: 120 -TVTHGSCVTFLD 131
+++ + F++
Sbjct: 297 VSISANGFINFVN 309
Score = 32.2 bits (71), Expect = 0.014
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
Query: 4 VWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH 62
S + + H H + + Y A+G N+RI+D +
Sbjct: 42 TVPVGSLTDTEIYTEHSHQT-TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV 100
Query: 63 SSGIKHVQFFKNNTRLISCAEDKTVRLW 90
SG + + ++ I+ + R
Sbjct: 101 FSGPVKDISWDSESKRIAAVGEGRERFG 128
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 51.4 bits (121), Expect = 2e-09
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 12/96 (12%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT------ 57
+WD G L + + D+ R+ +G+ D I+++DL
Sbjct: 202 LWDIECGACLRVLEGHEELV--RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 259
Query: 58 --VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
HS + +QF + +++S + D T+ +WD
Sbjct: 260 LRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293
Score = 44.8 bits (104), Expect = 6e-07
Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 5/108 (4%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
VW+ + E + + + +GS+D IR++D+ +
Sbjct: 162 VWNTSTCEFVRTLNGHKR--GIACLQYRDRLVVSGSSDNTIRLWDIECGA---CLRVLEG 216
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLE 111
+N R++S A D +++WD+ A+ + + +L
Sbjct: 217 HEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV 264
Score = 37.5 bits (85), Expect = 2e-04
Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE 102
S G+ +Q+ ++ +++S D T+++WD + + L
Sbjct: 13 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT 52
Score = 36.4 bits (82), Expect = 6e-04
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 14 HSFQ----HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHV 69
HS Q K D ++ +G D I+I+D N + + GH+ + +
Sbjct: 3 HSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRI-LTGHTGSVLCL 61
Query: 70 QF 71
Q+
Sbjct: 62 QY 63
Score = 35.2 bits (79), Expect = 0.001
Identities = 26/132 (19%), Positives = 58/132 (43%), Gaps = 4/132 (3%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH 62
VWD S ++ + +++V+ D + + S D+ I++++ + + T GH
Sbjct: 119 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRT-LNGH 177
Query: 63 SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT 122
GI +Q+ + ++S + D T+RLWD+ A ++ LE + ++
Sbjct: 178 KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA 235
Query: 123 HGSCVTFLDANS 134
+ + D +
Sbjct: 236 YDGKIKVWDLVA 247
Score = 26.3 bits (56), Expect = 1.5
Identities = 14/95 (14%), Positives = 36/95 (37%)
Query: 40 NDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQ 99
D++I ++D+ P ++ ++S + D+T+++W+ S V+
Sbjct: 113 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR 172
Query: 100 KLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS 134
L + RD ++ + + + D
Sbjct: 173 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 207
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 50.2 bits (118), Expect = 9e-09
Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 8/124 (6%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
VWD +G +H+ + S + L +G+ D ++I+D+ T+ +
Sbjct: 201 VWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK 258
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF------GAVPNSLEISRDGT 117
N +I+ ++D TV+LWD+ ++ L G V + S
Sbjct: 259 HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL 318
Query: 118 TITV 121
V
Sbjct: 319 VCAV 322
Score = 42.5 bits (98), Expect = 3e-06
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 5 WDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
W + + H V + + F R+ +GS+D ++++ T GH+
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRT-LVGHT 57
Query: 64 SGIKHVQFFKN 74
G+ Q N
Sbjct: 58 GGVWSSQMRDN 68
Score = 39.0 bits (89), Expect = 5e-05
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 55 EPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE 102
P V +GH + R++S ++D T+++W ++ L
Sbjct: 8 SPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 54
Score = 39.0 bits (89), Expect = 6e-05
Identities = 14/100 (14%), Positives = 36/100 (36%), Gaps = 9/100 (9%)
Query: 4 VWDAVSGEELHSFQHPHI-VKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR-- 60
+WD +G+ L + Q P+ + + + T S+D ++++DL + +
Sbjct: 241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 300
Query: 61 --GHSSGIKHVQFFKNNTRLISCAEDKT----VRLWDVSA 94
G + ++ + + T + + D
Sbjct: 301 SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340
Score = 34.4 bits (77), Expect = 0.003
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
VWD +G+ LH + D R+ +G+ D ++++D T +GH+
Sbjct: 121 VWDIETGQCLHVLMGHV--AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT-LQGHT 177
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQK 100
+ + +QF + ++S + D ++R+WDV +
Sbjct: 178 NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT 212
Score = 25.5 bits (54), Expect = 2.5
Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 4/108 (3%)
Query: 14 HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK 73
+ R+ +GS D +R++D+ + ++
Sbjct: 89 CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA---VRCVQY 145
Query: 74 NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV 121
+ R++S A D V++WD + L+ G + DG +
Sbjct: 146 DGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQFDGIHVVS 192
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 49.9 bits (117), Expect = 1e-08
Identities = 5/79 (6%), Positives = 22/79 (27%), Gaps = 5/79 (6%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
S + + YD+ + + ++ + ++ +
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-----EVKNNLTDLRLSADRKTVMVRKD 334
Query: 84 DKTVRLWDVSASAEVQKLE 102
D + + + + + +E
Sbjct: 335 DGKIYTFPLEKPEDERTVE 353
Score = 24.4 bits (51), Expect = 5.1
Identities = 7/82 (8%), Positives = 17/82 (20%), Gaps = 7/82 (8%)
Query: 5 WDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPD------AEPTV 58
+D + + + A L S D + ++P V
Sbjct: 164 YDMEGRKIFAATTENSHDYAPAFDADSKN-LYYLSYRSLDPSPDRVVLNFSFEVVSKPFV 222
Query: 59 YRGHSSGIKHVQFFKNNTRLIS 80
+ + +
Sbjct: 223 IPLIPGSPNPTKLVPRSMTSEA 244
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 48.4 bits (113), Expect = 3e-08
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 14 HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQ--- 70
Q P DS + AT D IR++D+ + + + Q
Sbjct: 245 EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK-WTLDKQQLGNQQVGV 303
Query: 71 FFKNNTRLISCAEDKTVRLWDV 92
N R+IS + D T+ +++
Sbjct: 304 VATGNGRIISLSLDGTLNFYEL 325
Score = 34.5 bits (77), Expect = 0.002
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 68 HVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-----GAVPNSLEISRDGTTITVT 122
+ ++ + + D T+R+WDV+ S VQK G + + +G I+++
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 315
Query: 123 HGSCVTFLD 131
+ F +
Sbjct: 316 LDGTLNFYE 324
Score = 26.8 bits (57), Expect = 0.84
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 11/85 (12%)
Query: 18 HPHIVKSSVHFA--TDSYRLATGSNDKNIRIYDLNKPDAEPT-------VYRGHSSGIKH 68
H V ++V F+ S L +G + ++ + ++ + I
Sbjct: 61 HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD 120
Query: 69 VQFFKNNTRLI--SCAEDKTVRLWD 91
+ + RL D
Sbjct: 121 ISWDFEGRRLCVVGEGRDNFGVFIS 145
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 48.2 bits (113), Expect = 4e-08
Identities = 12/133 (9%), Positives = 31/133 (23%), Gaps = 7/133 (5%)
Query: 3 TVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH 62
W S S + F D AT DL +
Sbjct: 196 YFWPHQSPRHEFSMLYTI-----ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL 250
Query: 63 SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT 122
+ + I + + +D+ ++ + + G + +
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLG 309
Query: 123 -HGSCVTFLDANS 134
+ + + ++
Sbjct: 310 GTFNDLAVFNPDT 322
Score = 42.0 bits (97), Expect = 5e-06
Identities = 12/107 (11%), Positives = 27/107 (25%), Gaps = 2/107 (1%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
D +G+ + + YDL + H+
Sbjct: 234 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHT 293
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSL 110
V F K +L + +++ +V+ ++ S
Sbjct: 294 --YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMST 338
Score = 37.0 bits (84), Expect = 3e-04
Identities = 12/104 (11%), Positives = 23/104 (22%), Gaps = 8/104 (7%)
Query: 28 FATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL-ISCAEDKT 86
+ + N+ + D+ + G +N +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 87 VRLWDVSASAEVQKLEF-------GAVPNSLEISRDGTTITVTH 123
+ D+ G S IS DG + T
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV 107
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 46.4 bits (108), Expect = 2e-07
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 14 HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK 73
H + + F L +GS + IY+L + I V FK
Sbjct: 276 KFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVN-FK 333
Query: 74 NNTRLISCAEDKTVRLWDVSAS 95
T + + +D L + S
Sbjct: 334 GKTLVAAVEKDGQSFLEILDFS 355
Score = 39.1 bits (89), Expect = 5e-05
Identities = 10/98 (10%), Positives = 33/98 (33%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
V+D+++ + L ++ +A ++ ++ +
Sbjct: 37 VYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNST 96
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
+ +KN +++ + D T+ +W + + V
Sbjct: 97 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 134
Score = 39.1 bits (89), Expect = 6e-05
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR 77
H V + + F + + TG++DK IR+YD GH G+ +++
Sbjct: 11 HMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-FLLQLSGHDGGVWALKYAHGG-I 66
Query: 78 LISCAEDKTVRLW 90
L+S + D+TVR+W
Sbjct: 67 LVSGSTDRTVRVW 79
Score = 39.1 bits (89), Expect = 7e-05
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 55 EPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF--GAVPNSLEI 112
+ T RGH + + F + +I+ A+DK +R++D + +L G V +L+
Sbjct: 4 QRTTLRGHMTSVITCLQF-EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGV-WALKY 61
Query: 113 SRDGTTITVTHGSC 126
+ G ++ +
Sbjct: 62 AHGGILVSGSTDRT 75
Score = 32.2 bits (71), Expect = 0.016
Identities = 5/67 (7%), Positives = 21/67 (31%)
Query: 59 YRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTT 118
+ H + + + F + ++ + ++++ + V ++ G T
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT 336
Query: 119 ITVTHGS 125
+
Sbjct: 337 LVAAVEK 343
Score = 30.2 bits (66), Expect = 0.056
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 4 VWDAVSGEELHSFQHPHIVK-SSVHFATDSYRLATGSNDKNIRIYDLN 50
+++ SG+ +H+ + SV+F +A D + L+
Sbjct: 307 IYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 45.2 bits (105), Expect = 4e-07
Identities = 5/74 (6%), Positives = 20/74 (27%), Gaps = 4/74 (5%)
Query: 57 TVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL----EFGAVPNSLEI 112
+ + I ++ + + L+ + D ++ ++ A+ L +
Sbjct: 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64
Query: 113 SRDGTTITVTHGSC 126
+
Sbjct: 65 IDNTDLQIYVGTVQ 78
Score = 44.8 bits (104), Expect = 6e-07
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR--GHSSGIKHVQFFKNNTRLISC 81
S + L S D ++ +Y + + + + + F N I
Sbjct: 15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV 74
Query: 82 A 82
Sbjct: 75 G 75
Score = 42.1 bits (97), Expect = 5e-06
Identities = 8/127 (6%), Positives = 35/127 (27%), Gaps = 14/127 (11%)
Query: 14 HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR------------- 60
+ ++ + A S D + + + + +
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247
Query: 61 -GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTI 119
+ + ++F + L + D + W++ +++ + ++I+ +
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNIL 307
Query: 120 TVTHGSC 126
+
Sbjct: 308 CLATSDD 314
Score = 38.3 bits (87), Expect = 1e-04
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
W+ + +++ +F + S V A L ++D + E ++
Sbjct: 277 CWNLQTRKKIKNFAKFNED-SVVKIACSDNILCLATSDDTFKTNAAIDQTIE-----LNA 330
Query: 64 SGI 66
S I
Sbjct: 331 SSI 333
Score = 37.9 bits (86), Expect = 1e-04
Identities = 11/90 (12%), Positives = 26/90 (28%), Gaps = 2/90 (2%)
Query: 3 TVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH 62
+ + +S+ F+ L T +D I ++L + +
Sbjct: 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293
Query: 63 SSGIKHVQFFKNNTRLISCAEDKTVRLWDV 92
+ V+ ++ L D T +
Sbjct: 294 EDSV--VKIACSDNILCLATSDDTFKTNAA 321
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 42.9 bits (99), Expect = 3e-06
Identities = 12/85 (14%), Positives = 31/85 (36%), Gaps = 12/85 (14%)
Query: 29 ATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR-----GHSSGIKHVQFFK-------NNT 76
+ + + S D ++++D D E + H SG+ HV +
Sbjct: 21 SACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 80
Query: 77 RLISCAEDKTVRLWDVSASAEVQKL 101
+ + + + + ++ E +K+
Sbjct: 81 LVATTSFSGDLLFYRITREDETKKV 105
Score = 39.1 bits (89), Expect = 6e-05
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 57 TVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG 104
+ H + I V N+ +SC+ D +++WD +
Sbjct: 8 NAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKS 53
Score = 36.8 bits (83), Expect = 4e-04
Identities = 18/132 (13%), Positives = 36/132 (27%), Gaps = 5/132 (3%)
Query: 5 WDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSS 64
+++ + + + T ++ + HSS
Sbjct: 231 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS 290
Query: 65 GIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-----FGAVPNSLEISRDGTTI 119
+ + F + L S D +R WDV + L + L + G ++
Sbjct: 291 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL 350
Query: 120 TVTHGSCVTFLD 131
V FL
Sbjct: 351 AEPGVFDVKFLK 362
Score = 32.9 bits (73), Expect = 0.009
Identities = 21/155 (13%), Positives = 45/155 (29%), Gaps = 28/155 (18%)
Query: 4 VWDAVSGEELHSFQ-------------HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLN 50
VWD + + H ++++ A + +AT S ++ Y +
Sbjct: 38 VWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRIT 97
Query: 51 KPDAEPTVY---------RGHSSGIKHVQF-----FKNNTRLISCAEDKTVRLWDVSASA 96
+ D V +++ + RL++ T +W A
Sbjct: 98 REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 157
Query: 97 EVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLD 131
+ +LE+ +T T +D
Sbjct: 158 DESNSLTLNWSPTLELQGT-VESPMTPSQFATSVD 191
Score = 31.0 bits (68), Expect = 0.040
Identities = 11/94 (11%), Positives = 24/94 (25%), Gaps = 20/94 (21%)
Query: 4 VWDAVSGEELHSFQ-HPHIVKS---SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVY 59
WD + E + + H ++ + LA
Sbjct: 315 FWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD----------------V 358
Query: 60 RGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
+ G + N L D+++R + +
Sbjct: 359 KFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 392
Score = 24.0 bits (50), Expect = 8.1
Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 9/111 (8%)
Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS-----SGIKHVQFFKNNTRL 78
+SV + +ATG N+ ++I +L+ HS + I+ V+F + L
Sbjct: 188 TSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246
Query: 79 ISCAEDKTV---RLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSC 126
+ + L++ + L + + + V S
Sbjct: 247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 297
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 42.5 bits (98), Expect = 4e-06
Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 3/111 (2%)
Query: 25 SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED 84
D + + DL + R TR
Sbjct: 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--Y 259
Query: 85 KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS 134
+ +D+ +A ++++ S+ +S DG+T+ + + DA +
Sbjct: 260 NVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310
Score = 40.6 bits (93), Expect = 2e-05
Identities = 10/99 (10%), Positives = 25/99 (25%), Gaps = 3/99 (3%)
Query: 4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
D +GE A + + + +DL K + V
Sbjct: 223 TMDLETGEMAMREVRIMD-VFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV--PLP 279
Query: 64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE 102
V + + + + +D + +++
Sbjct: 280 HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318
Score = 40.2 bits (92), Expect = 2e-05
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLN--KPDAEPTV 58
+ +D + PH SV+ +TD + G ++ YD + + +
Sbjct: 261 VLESFDLEKNASIKRVPLPHSY-YSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319
Query: 59 YRGHSSGIKHVQFF 72
S + V+ F
Sbjct: 320 PGNASMSLASVRLF 333
Score = 34.8 bits (78), Expect = 0.002
Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 78 LISCAEDKTVRLWDVSASAEVQKL---EFGAVPNSLEISRDGTTITVT--HGSCVTFLDA 132
+++ A + + D A + + + G P ++ G T + +D
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 133 NS 134
+
Sbjct: 64 VT 65
Score = 32.5 bits (72), Expect = 0.012
Identities = 7/93 (7%), Positives = 25/93 (26%), Gaps = 8/93 (8%)
Query: 35 LATGSNDKNIRIYDLNKPDAEPTVY-RGHSSGIKHVQFFKNNTRL-ISCAEDKTVRLWDV 92
+ + + + D K + + + + +++ D+
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 93 SASAEVQKLE------FGAVPNSLEISRDGTTI 119
+ +++ +S DG T+
Sbjct: 64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTL 96
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 40.2 bits (92), Expect = 2e-05
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 79 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDANS 134
I+ +E + + DV+++ + G+ P IS DGT + V H + V+ +D +
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63
Score = 35.6 bits (80), Expect = 8e-04
Identities = 5/50 (10%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 62 HSSGIKHVQFFKNNTRL-ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSL 110
+ + ++ ++ + TV + D + + + G P +
Sbjct: 242 VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNPYAS 291
Score = 32.5 bits (72), Expect = 0.010
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 32 SYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL-ISCAEDKTVRLW 90
++ S NI + D+ T+ G S + T++ ++ A V +
Sbjct: 2 TFAYIANSESDNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSII 59
Query: 91 DVS 93
D +
Sbjct: 60 DTA 62
Score = 26.0 bits (55), Expect = 1.8
Identities = 4/47 (8%), Positives = 12/47 (25%), Gaps = 2/47 (4%)
Query: 5 WDAVSGEELHSFQHPHIVKSSVHFATDSYRL-ATGSNDKNIRIYDLN 50
D + + + + D ++ S + + D
Sbjct: 229 IDTGTNKITARIPVGPDP-AGIAVTPDGKKVYVALSFCNTVSVIDTA 274
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 39.0 bits (89), Expect = 6e-05
Identities = 12/93 (12%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Query: 27 HFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI--SCAED 84
+ + + + D E I + ++ L+ D
Sbjct: 265 LLVDQRDEWRHKTASRFVVVLDA--KTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD 322
Query: 85 KTVRLWDVSASAEVQKLE-FGAVPNSLEISRDG 116
KT+ + D + E++ + G P + + G
Sbjct: 323 KTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355
Score = 37.1 bits (84), Expect = 3e-04
Identities = 9/100 (9%), Positives = 24/100 (24%)
Query: 26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK 85
+ ++ + H + + +
Sbjct: 221 IDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR 280
Query: 86 TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGS 125
V + D + K E G +S+ +S+D + +
Sbjct: 281 FVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST 320
Score = 27.8 bits (60), Expect = 0.37
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 80 SCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT 122
A + D A + ++ G +P + ++ DG+ I
Sbjct: 23 HFAAVTQQFVIDGEAGRVIGMIDGGFLP-NPVVADDGSFIAHA 64
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 38.0 bits (87), Expect = 1e-04
Identities = 15/135 (11%), Positives = 31/135 (22%), Gaps = 14/135 (10%)
Query: 4 VWDAVSGEELHSFQ---HPHIVKSS-----VHFATDSYRLATGSNDKNIRIYDL--NKPD 53
V+DA + + L P + V T R + G+ + I D
Sbjct: 2 VYDADAKKLLGQIDGGFGPGFAIAPDRKASVVATTYFSRGSHGTRTDVVEIIDNTTLDHA 61
Query: 54 AEPTVYRGHSSGIKHVQFFKNNTRLI---SCAEDKTVRLWDVSASAEVQKLEFGAVPNSL 110
E + H+ + + + + + + L +
Sbjct: 62 GEIVIPAKHAQHVPSPYNTAFSADGKRLYVANITPAASVTVI-DAVSKKMLSEIDTAACV 120
Query: 111 EISRDGTTITVTHGS 125
G
Sbjct: 121 LAYPAGDDRFTALCE 135
Score = 28.8 bits (63), Expect = 0.21
Identities = 14/147 (9%), Positives = 35/147 (23%), Gaps = 18/147 (12%)
Query: 3 TVWDAVSGEELHSFQHPH---IVKSSVHFATDSYR---LATGSNDKNIRIYDLNKPDAEP 56
+ D + + P S + S L + + ++ +
Sbjct: 51 EIIDNTTLDHAGEIVIPAKHAQHVPSPYNTAFSADGKRLYVANITPAASVTVIDAVSKKM 110
Query: 57 TVYRGHSSGIKHVQFFKNNTRLI--SCAEDKTVRLWDVSASAEVQKLEFG----AVPNSL 110
V + C K + + + E ++ +
Sbjct: 111 L---SEIDTAACVLAYPAGDDRFTALCESGKALTVTLDANGKEAKRTMSDAFIDVDKDPA 167
Query: 111 EISRD---GTTITVTHGSCVTFLDANS 134
++ G + T+G V D +
Sbjct: 168 FVNASRYKGDYLFTTYGGNVRSADFSG 194
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 37.7 bits (86), Expect = 2e-04
Identities = 8/132 (6%), Positives = 36/132 (27%), Gaps = 19/132 (14%)
Query: 3 TVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNI-----------------R 45
A + + + +F + +++ + +
Sbjct: 236 GDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN 295
Query: 46 IYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI--SCAEDKTVRLWDVSASAEVQKLEF 103
+ + + + + ++ + A + + ++D ++ + +E
Sbjct: 296 TSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355
Query: 104 GAVPNSLEISRD 115
P SL + +
Sbjct: 356 DKGPESLSVQNE 367
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 36.1 bits (82), Expect = 7e-04
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 67 KHVQFFKN--NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT 122
K + N ++ + + L D + V+ ++ G + +S G + V
Sbjct: 22 KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVI 79
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 34.8 bits (79), Expect = 0.002
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 75 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT 122
N ++ + + L D S L+ G + +S G + V
Sbjct: 32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVI 79
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 33.7 bits (75), Expect = 0.004
Identities = 8/96 (8%), Positives = 23/96 (23%), Gaps = 6/96 (6%)
Query: 37 TGSNDKNIRIYDLNKPDAEPTVYR-GHSSGIKHVQFFKNNTRLISCAE-DKTVRLWDVSA 94
+ I +++LN A ++ + + L + V + ++
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68
Query: 95 SAEVQKLEF----GAVPNSLEISRDGTTITVTHGSC 126
+ G + V +
Sbjct: 69 DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNA 104
Score = 33.3 bits (74), Expect = 0.006
Identities = 7/50 (14%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 79 ISCAEDKTVRLWDVSASAE---VQKLEFGAVPNSLEISRDGTTITVTHGS 125
I+ E + + +W+++ Q ++ + +S D + V
Sbjct: 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRP 57
>d2ogqa2 d.223.1.2 (A:507-593) Serine/threonine-protein kinase plk
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 25.5 bits (56), Expect = 1.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 63 SSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
S+G + FF+++T+LI C V D
Sbjct: 20 SNGSVQINFFQDHTKLILCPLMAAVTYID 48
>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 98
Score = 24.2 bits (52), Expect = 3.9
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 40 NDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFF 72
+D + IY L EP VY G + I F
Sbjct: 57 DDFKLSIY-LPSAMDEPVVYNGKKADIADADVF 88
>d1wgoa_ b.1.3.1 (A:) VPS10 domain-containing receptor SorCS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 123
Score = 24.2 bits (52), Expect = 4.7
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 98 VQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLD 131
VQ P L++S G + V G V F+
Sbjct: 19 VQLQCPLTPPRGLQVSIQGEAVAVRPGEDVLFVV 52
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate
uridylyltransferase {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 173
Score = 24.3 bits (52), Expect = 5.4
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 7/65 (10%)
Query: 17 QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT 76
H +++S VH L+ I D+ + I ++Q FKN
Sbjct: 101 FHDVVIESPVHSIQ----LSDIDPV---GIGDILIAYKKRINQIAQHDSINYIQVFKNQG 153
Query: 77 RLISC 81
Sbjct: 154 ASAGA 158
>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 317
Score = 24.4 bits (52), Expect = 6.2
Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 13 LHSFQHPHIVKSSVHFATDSYRLAT-----GSNDKNIRIYDLNKPDAEPTVY-RGHSSGI 66
+ S +PH+ + T + +L T G +R + N + + G+
Sbjct: 65 MASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGM 124
Query: 67 KHVQFFKNNTRLISCA-----EDKTVRLWD 91
+++ + R ++ + V++ D
Sbjct: 125 NYLEDRRLVHRDLAARNVLVKTPQHVKITD 154
>d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 349
Score = 24.3 bits (52), Expect = 6.7
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 11/70 (15%)
Query: 46 IYDLNKPDAEPTVYRGHSS-----------GIKHVQFFKNNTRLISCAEDKTVRLWDVSA 94
+ PD EP + G + I F + +I E+ +
Sbjct: 49 CWKGKPPDEEPIITHGFTMTTDIFFKEAIEAIAESAFKTSPYPIILSFENHVDSPRQQAK 108
Query: 95 SAEVQKLEFG 104
AE + FG
Sbjct: 109 MAEYCRTIFG 118
>d2exda1 b.40.12.1 (A:72-143) Hypothetical protein PH0471
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 72
Score = 22.9 bits (49), Expect = 7.1
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 2 GTVWDAVSGEELHSFQHPHIVK 23
G W A S E+L +V
Sbjct: 37 GDKWIAYSDEKLSLGDRVMVVD 58
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate
uridylyltransferase {Escherichia coli [TaxId: 562]}
Length = 176
Score = 23.9 bits (51), Expect = 7.5
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 59 YRGHSSGIKHVQFFKNNTRLISC 81
VQ F+N + C
Sbjct: 137 TAELGKTYPWVQVFENKGAAMGC 159
>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain
{Caenorhabditis elegans, pjk4 [TaxId: 6239]}
Length = 350
Score = 23.9 bits (51), Expect = 9.6
Identities = 14/106 (13%), Positives = 33/106 (31%), Gaps = 20/106 (18%)
Query: 11 EELHSFQHPHIVKSSVHFATDSYR------LATGSNDKNIRIYDLNKPDAEPTVYR---- 60
+ + +HP +V F D+ ++ G + ++ D + +E
Sbjct: 75 QTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFE--KVADEHNKMSEDEAVEYMRQ 132
Query: 61 -------GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQ 99
H + H K + + ++L D +A +
Sbjct: 133 VCKGLCHMHENNYVH-LDLKPENIMFTTKRSNELKLIDFGLTAHLD 177
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.130 0.385
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 484,972
Number of extensions: 19000
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 115
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.7 bits)