BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6450
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
+F LY F+ R DEL ++ G + + D SD NWWKG GR G PSNYV E+
Sbjct: 16 VFRALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYV-----AEQA 70
Query: 85 LQVTHNLQIADGESGLSLLRDQIVIQIG 112
+ + L A LS LR+ + ++G
Sbjct: 71 ESIDNPLHEAAKRGNLSWLRECLDNRVG 98
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac
Protein
Length = 68
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 41/56 (73%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
N +V LY F + ++L+++PG +T+++ S+++WWKGK R+G+FP+N+V ++
Sbjct: 8 NTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLS 63
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 31/53 (58%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
+F LY F+ R DEL + G + + D SD NWWKG GR G PSNYV +
Sbjct: 9 VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 61
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 31/53 (58%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
+F LY F+ R DEL + G + + D SD NWWKG GR G PSNYV +
Sbjct: 5 VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 57
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPG 81
LFV LY++++R D+L G K ++++S+ +WW+ + + G GY PSNYV V
Sbjct: 4 TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSI 63
Query: 82 ERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPL 133
+ L D E L + G+ G +IR E +G L
Sbjct: 64 QAEEWYFGKLGRKDAERQL--------LSFGNP-RGTFLIRESETTKGAYSL 106
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPG 81
LFV LY++++R D+L G K ++++S+ +WW+ + + G GY PSNYV V
Sbjct: 5 TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSI 64
Query: 82 ERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPL 133
+ L D E L + G+ G +IR E +G L
Sbjct: 65 QAEEWYFGKLGRKDAERQL--------LSFGNPR-GTFLIRESETTKGAYSL 107
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide
P2l Corresponding To Residues 91-104 Of The P85 Subunit
Of Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
LFV LY++++R D+L G K ++++S+ +WW+ + + G GY PSNYV V
Sbjct: 6 TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 62
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
LFV LY++++R D+L G K ++++S+ +WW+ + + G GY PSNYV V
Sbjct: 4 TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 60
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
+Y+F++ +EL K G +TV+D SD NWWKG+ +G FPSN+V
Sbjct: 22 AIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L++F + EL + G + V+D SD NWWKG C G+ G FP NYV V
Sbjct: 5 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV 55
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L++F + EL + G + V+D SD NWWKG C G+ G FP NYV V
Sbjct: 7 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV 57
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
LFV LY++++R D+L G K ++++S+ +WW+ + + G GY PSNYV V
Sbjct: 6 TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 62
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
LFV LY++++R D+L G K ++++S+ +WW+ + + G GY PSNYV V
Sbjct: 1 TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 57
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
LFV LY++++R D+L G K ++++S+ +WW+ + + G GY PSNYV V
Sbjct: 5 TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 61
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
LFV LY++++R D+L G K ++++S+ +WW+ + + G GY PSNYV V
Sbjct: 2 TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 58
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L++F + EL + G + V+D SD NWWKG C G+ G FP NYV V
Sbjct: 163 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV 213
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYV-IKVQP---G 81
+ Y+FK+ DEL K G + V++ DQNW+K + G+ G+ P NY+ +K P G
Sbjct: 4 IAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFG 63
Query: 82 ERPLQVTHNLQIADGESGLSLLRD--------QIVIQIGDEVDGMVMIRNGENRQGVCPL 133
+ P + G L+R+ + ++ G++V ++R+G + + +
Sbjct: 64 KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV 123
Query: 134 KY 135
K+
Sbjct: 124 KF 125
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L++F + EL + G + V+D SD NWWKG C G+ G FP NYV V
Sbjct: 7 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV 57
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3
Domain Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
LFV LY++++R D+L G K ++++S+ +WW+ + + G GY PSNYV V
Sbjct: 2 TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 58
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 6 PLITLHDLTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG 65
P L+DL A+ V +N+ + DEL L G KV V++ WW+G G
Sbjct: 9 PGERLYDLNMPAY---------VKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNG 59
Query: 66 RVGYFPSNYVIKVQPGERPL 85
+VG+FPSNYV + G+ PL
Sbjct: 60 QVGWFPSNYV--TEEGDSPL 77
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
L++F + EL + G + V+D SD NWWKG C G+ G FP NYV V
Sbjct: 7 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVN 58
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPG 81
+FV LY++++R ++L K G + +I+ ++ +WW+ + + G+ GY PSNYV+
Sbjct: 28 TIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADSI 87
Query: 82 ERPLQVTHNLQIADGESGLS 101
+ + D ESG S
Sbjct: 88 QAEEWYFGKMGRKDAESGPS 107
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
+Y++ +++ DEL G + V++ D +WWKG+ G+VG FPSNYV
Sbjct: 8 MYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYV 54
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG 81
V LY++++ DE+ P +T I+ D WW+G C GR G FP+NYV Q G
Sbjct: 21 VALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSG 75
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
V LY++++ DE+ P +T I+ D WW+G C GR G FP+NYV
Sbjct: 14 VALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 62
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
LY+F++ +EL K G + V+D SD NWWKG+ +G FPSN+V
Sbjct: 22 ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFV 69
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
+ LY++++ DE+ P +T I+ D WW+G C GR G FP+NYV
Sbjct: 13 IALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 61
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVID--TSDQNWWKGKCMGRVGYFPSNYV 75
V YNF +R EL L+ G V + DQ WWKG+ GR+G+FPS YV
Sbjct: 11 VARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYV 61
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQ 86
+ +Y++ + + DEL G + V++ D +WW+G+ G G FPSNYV + Q
Sbjct: 22 IAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSDPSQQ 81
Query: 87 VTHNLQIAD 95
+LQ D
Sbjct: 82 WCADLQTLD 90
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVI 76
LY+F++ +EL K G +TV+D SD NWW+G+ G FPSN+V
Sbjct: 10 ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 58
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
+NFK + DEL + G + V + WW+G GR G+FPSNYV +++ ER
Sbjct: 17 FNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSERS 71
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
LY+F++ DEL + G V V+D+S+ +WW G+ ++G FP+NYV
Sbjct: 10 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 57
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
LY+F++ DEL + G V V+D+S+ +WW G+ ++G FP+NYV
Sbjct: 6 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 53
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3
Domain
Length = 58
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
LY F + +L LKPG KV +++ W+KG C GR G FP+NYV
Sbjct: 7 ALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYV 54
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
V +N+ + DEL L G KV V++ WW+G G+VG+FPSNYV +
Sbjct: 9 VKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTE 58
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
LY+F++ DEL + G V V+D+S+ +WW G+ ++G FP+NYV
Sbjct: 8 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 55
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
LY+F++ DEL + G V V+D+S+ +WW G+ ++G FP+NYV
Sbjct: 7 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 54
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related
Kinase
Length = 77
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 9/61 (14%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWW-------KGKCMGR--VGYFPSNYVI 76
FV L+++++R A++L + G K+ V+DTS + WW KG +G+ GY PSNYV
Sbjct: 10 FVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVA 69
Query: 77 K 77
+
Sbjct: 70 E 70
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
LFV LY++++ D+L G K ++++S+ +WW+ + + G GY PSNYV V
Sbjct: 16 TLFVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
LFV LY++++ D+L G K ++++S+ +WW+ + + G GY PSNYV V
Sbjct: 16 TLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
LFV LY++++ D+L G K ++++S+ +WW+ + + G GY PSNYV V
Sbjct: 2 TLFVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 58
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
+FV LY++++R ++L K G + +I+ ++ +WW+ + + G+ GY PSNYV
Sbjct: 7 IFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYV 59
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
+NF+ + DEL G + V + WW+G GR G+FPSNYV +++P
Sbjct: 13 FNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIKP 63
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
LFV LY++++ D+L G K ++++S+ +WW+ + + G GY PSNYV V
Sbjct: 2 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 57
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
V + + + DEL L G +VTV++ WW+G G++G+FPSNYV++
Sbjct: 5 VKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYVLE 54
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
V + + + DEL L G +VTV + WW+G G++G+FPSNYV++
Sbjct: 6 VXFAYVAEREDELSLVXGSRVTVXEXCSDGWWRGSYNGQIGWFPSNYVLE 55
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 21 LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
+ T L++F + + EL K G +T+I+ D NWW+G+ R G FPSNYV
Sbjct: 2 METKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 56
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQ--NWWKGKCMGRVGYFPSNYVI 76
LY+F+ + +L+ + G ++TVI +D +WW+GK G+ G FP+NYV
Sbjct: 21 TALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVT 72
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
FV LY+++SR +L K G ++ +++ ++ +WW + GR GY PSNYV
Sbjct: 3 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYV 54
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 49.3 bits (116), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
FV LY+++SR +L K G ++ +++ ++ +WW + G+ GY PSNYV
Sbjct: 88 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 139
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
T L++F + + EL K G +T+I+ D NWW+G+ R G FPSNYV
Sbjct: 2 TKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
T L++F + + EL K G +T+I+ D NWW+G+ R G FPSNYV
Sbjct: 2 TKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
+V ++++++H DEL + G +T I D WW+G+ GR G FP N+V +++
Sbjct: 5 IVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIK 57
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
+NF+ + DEL G + V + WW+G GR G+FPSNYV +V+
Sbjct: 15 FNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVREVKA 65
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement
Tag (Inset) Using A Sortase-Mediated Protein Ligation
Method
Length = 142
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDT-SDQNWWKGKCMGRVGYFPSNYV 75
Y+F +R EL LK G + +++ Q WW+G+ GR+G+FPSNYV
Sbjct: 12 YDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYV 58
>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse
Hypothetical Protein Sh3rf2
Length = 70
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQ 79
N+FV L+ + + +ELDL+ G + V+ W KG + GR G FPS+YVI V
Sbjct: 8 NMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVS 65
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase
C-src, In Complex With Amp-pnp
Length = 452
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
FV LY+++SR +L K G ++ +++ ++ +WW + G+ GY PSNYV
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
FV LY+++SR +L K G ++ +++ ++ +WW + G+ GY PSNYV
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
FV LY+++SR +L K G ++ +++ ++ +WW + G+ GY PSNYV
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
FV LY+++SR +L K G ++ +++ ++ +WW + G+ GY PSNYV
Sbjct: 6 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 57
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
P + +Y++ + + DEL G + V++ D +WW+G+ G G FPSNYV
Sbjct: 33 PVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYV 86
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
Length = 64
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
FV LY+++SR +L K G ++ +++ ++ +WW + G+ GY PSNYV
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
+ LF LY++++R D+L G K ++++S+ +WW+ + + G GY PS Y+ V
Sbjct: 5 STLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPV 62
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
+ FV LY+++SR +L K G ++ +++ ++ +WW + G+ GY PSNYV
Sbjct: 2 STTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
FV LY+++SR +L K G ++ +++ ++ +WW + G+ GY PSNYV
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQP- 80
LFV LY++ + +L G K ++D +WW+ + + G GY PSNYV V
Sbjct: 7 TLFVALYDYNATRWTDLSFHKGEKFQILDGDSGDWWEARSLTTGETGYIPSNYVAPVDSI 66
Query: 81 -GERPLQVTHNL 91
GE+ L +L
Sbjct: 67 QGEQKLISEEDL 78
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
L LY+F++R DEL+L+ G V + + ++ WW G G+ G+FP+ YV
Sbjct: 9 LCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYV 59
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting
Exchange Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting
Exchange Factor
Length = 61
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
+NF+ + DEL G + V + WW+G GR G+FPSNYV ++
Sbjct: 13 FNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 61
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQ--NWWKGKCMGRVGYFPSNYV 75
V LYNF +L K G +T++ SD +WW G+ G+ G FP+NYV
Sbjct: 7 VALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYV 57
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4
And Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
Length = 59
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
+NF+ + DEL G + V + WW+G GR G+FPSNYV ++
Sbjct: 11 FNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 59
>pdb|1UHC|A Chain A, Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of
Kiaa1010 Protein [homo Sapiens]
Length = 79
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVID----TSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
++ +Y FK+R+ +EL + K+ +++ T + WW + G+ GY PSNY+ K +
Sbjct: 15 VYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTES 74
Query: 81 G 81
G
Sbjct: 75 G 75
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYVIKVQPGE 82
+ V LY++++ H ++L + G ++ V++ S + WWK + + + GY PSNYV +V E
Sbjct: 4 IVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARVDSLE 62
Query: 83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPL 133
+ D E L + G+ + G MIR+ E +G L
Sbjct: 63 TEEWFFKGISRKDAERQL--------LAPGNML-GSFMIRDSETTKGSYSL 104
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM
NMR RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
+ LF LY++++R D+L G K ++++S+ +WW+ + + G GY PS Y+ V
Sbjct: 7 STLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGETGYIPSPYLAPV 64
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
LY+F+ + EL K G +T+ + D+NW++G G G+FP NYV + P
Sbjct: 9 LYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVP 60
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYVIKVQPGE 82
+ V LY++++ H ++L + G ++ V++ S + WWK + + + GY PSNYV +V E
Sbjct: 11 IVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARVDSLE 69
Query: 83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPL 133
+ D E L + + G MIR+ E +G L
Sbjct: 70 TEEWFFKGISRKDAERQLLAPGNML---------GSFMIRDSETTKGSYSL 111
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQ--NWWKGKCMGRVGYFPSNYV 75
V LY+F + +L + G +T++ SD +WW G+ GR G FP+NYV
Sbjct: 7 VALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 57
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In
Complex With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
LY+F+ + EL K G +T+ + D+NW++G G+ G+FP NYV
Sbjct: 16 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYV 63
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 45.8 bits (107), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 12/107 (11%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYVIKVQPGE 82
+ V LY++++ H ++L + G ++ V++ S + WWK + + + GY PSNYV +V E
Sbjct: 10 IVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARVDSLE 68
Query: 83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQG 129
+ D E L + G+ + G MIR+ E +G
Sbjct: 69 TEEWFFKGISRKDAERQL--------LAPGNML-GSFMIRDSETTKG 106
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 34/52 (65%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
VL+++ ++ DEL+L G + VI+ ++ WW G ++G FPSN+V +++
Sbjct: 9 VLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNNKLGLFPSNFVKELE 60
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 38/58 (65%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
L + LY+++ + E+ +K G +T++++++++WWK + R G+ P+ YV K+ P +
Sbjct: 7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQ 64
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 37/54 (68%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L + LY+++ + E+ +K G +T++++++++WWK + GR G+ P+ YV K+
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTEVNGRQGFVPAAYVKKL 61
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 38/54 (70%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L +VLY+++ + EL +K G +T++++++++WWK + GR G+ P+ Y+ K+
Sbjct: 8 LVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL 61
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
LY+F+ + EL K G +T+ + D+NW++G G G+FP NYV
Sbjct: 12 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYV 59
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQV 87
V +++ ++ DEL+LK G + V+ ++ WW+G G+ G FPSN++ ++ L +
Sbjct: 23 VAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELGI 82
Query: 88 THN 90
+ +
Sbjct: 83 SQD 85
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCM--GRVGYFPSNYVIKVQP 80
LFV LY++++ +L G K ++D S +WW+ + + G GY PSNYV V
Sbjct: 7 TLFVALYDYQADRWTDLSFHKGEKFQILDASPPGDWWEARSLTTGETGYIPSNYVAPVDS 66
Query: 81 --GERPLQVTHNL 91
GE+ L +L
Sbjct: 67 IQGEQKLISEEDL 79
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Hexagonal Crystal Obtained In Sodium
Formate At Ph 6.5
Length = 62
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 37/54 (68%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L + LY+++ + DE+ +K G +T++++++++WWK + R G+ P+ YV K+
Sbjct: 8 LVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
V++ +++++ DEL +K G VT+I D D WW+G+ GR G FP N+V + P E
Sbjct: 7 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPLE 63
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
7
Length = 57
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 37/54 (68%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L + LY+++ + DE+ +K G +T++++++++WWK + R G+ P+ YV K+
Sbjct: 3 LVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 56
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQP- 80
LFV LY++ + +L G K +++ +WW+ + + G GY PSNYV V
Sbjct: 7 TLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSI 66
Query: 81 -GERPLQVTHNL 91
GE+ L +L
Sbjct: 67 QGEQKLISEEDL 78
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYVIKV 78
+ V LY++++ H ++L + G ++ V++ S + WWK + + + GY PSNYV +V
Sbjct: 11 IVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARV 65
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 37/54 (68%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L + LY+++ + E+ +K G +T++++++++WWK + GR G+ P+ YV K+
Sbjct: 3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNGRQGFVPAAYVKKL 56
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase
Sh3 Domain Complexed With An Artificial High Affinity
Ligand (Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase
Sh3 Domain Complexed With An Artificial High Affinity
Ligand (Pd1)
Length = 86
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYVIKV 78
+ V LY++++ H ++L + G ++ V++ S + WWK + + + GY PSNYV +V
Sbjct: 27 IVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARV 81
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
V++ +++++ DEL +K G VT+I D D WW+G+ GR G FP N+V + P
Sbjct: 8 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPP 62
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
V++ +++++ DEL +K G VT+I D D WW+G+ GR G FP N+V + P
Sbjct: 14 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPP 68
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l
Mutant
Length = 62
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 37/54 (68%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L +VLY+++ + EL +K G +T++++++++WWK + R G+ P+ Y+ K+
Sbjct: 8 LVLVLYDYQEKSPRELTIKKGDILTLLNSTNKDWWKVEVNDRQGFIPAAYLKKL 61
>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|B Chain B, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|E Chain E, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|C Chain C, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|D Chain D, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|F Chain F, Src Family Kinase Hck Sh3 Domain
Length = 57
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYVIKV 78
+ V LY++++ H ++L + G ++ V++ S + WWK + + + GY PSNYV +V
Sbjct: 2 IVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARV 56
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1
Length = 68
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
V +++ ++ DEL+LK G + V+ ++ WW+G G+ G FPSN++
Sbjct: 12 VAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 59
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
Length = 72
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
V LY F++ +ELD + G K+ ++ T + W +G GR G FP +V
Sbjct: 17 VALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFV 65
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
LY+F+ + EL + G +T+ + D+NW++G G+ G+FP +YV
Sbjct: 18 ALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYV 65
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L + LY+++ + E+ +K G +T++++++++WWK + R GY P+ YV K+
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGYVPAAYVKKL 61
>pdb|1GL5|A Chain A, Nmr Structure Of The Sh3 Domain From The Tec Protein
Tyrosine Kinase
Length = 67
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYV 75
+ + V +Y+F++ A +L L+ G + +++ +D +WW+ + G GY PSNYV
Sbjct: 2 SEIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYV 55
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3
Domain From Human Cd2ap (Cms) In Complex With A
Proline-Rich Peptide From Human Rin3
Length = 65
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
VL+ + ++ DEL+LK G + + + ++ WW G ++G FPSN+V +++
Sbjct: 12 VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE 63
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYV 75
V++ +++++ DEL +K G VT+I D D WW+G+ GR G FP N+V
Sbjct: 12 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 61
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 43.1 bits (100), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 29 LYNFKSRHADELDLKPGYKVTVI-DTSDQNWWKGKC-MGRVGYFPSNYVIKVQ 79
LY+++ + DEL K G ++T + D +Q W KG+ G+VG +P+NYV +Q
Sbjct: 434 LYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAIQ 486
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 37/54 (68%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L +VLY+++ + EL +K G +T++++++++WWK + R G+ P+ Y+ K+
Sbjct: 8 LVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLKKL 61
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 37/54 (68%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L + LY+++ + E+ +K G +T++++++++WWK + R G+ P++YV K+
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPASYVKKL 61
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
LY + ++ DEL + +I WW G+ G+ G FP+NYV K+
Sbjct: 10 ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI 60
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
VL+ + ++ DEL+LK G + + + ++ WW G ++G FPSN+V
Sbjct: 6 VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFV 53
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYV 75
+ Y+FK+ DEL K G + V++ DQNW+K + G+ G+ P NY+
Sbjct: 13 IAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYI 62
>pdb|1W1F|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase
pdb|1WA7|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With
A Herpesviral Ligand
Length = 65
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
++ V LY + H D+L K G K+ V++ + WWK K + + G+ PSNYV K+
Sbjct: 8 DIVVALYPYDGIHPDDLSFKKGEKMKVLEEHGE-WWKAKSLLTKKEGFIPSNYVAKL 63
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L + LY+++ + E+ +K G +T++++++++WWK + R G+ P+ YV K+
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVADRQGFVPAAYVKKL 61
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYVIKV 78
+ V LY++ S D+L + G ++ V++ S + WWK + + + GY PSNYV +V
Sbjct: 5 IVVALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARV 59
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
++F+++ EL L+ G V + D+NW +G+ GR+G FP+NYV
Sbjct: 8 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYV 53
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVID-----TSDQNWWKGKC-MGRVGYFPSNYV 75
++ ++++++ +EL L+ G +V V+ + D+ WW G+ GRVG FPSNYV
Sbjct: 31 VWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYV 87
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Sorbin And Sh3 Domain-Containing Protein 1
Length = 68
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
++FK++ EL L+ G V + DQNW++G+ GRVG FP Y+
Sbjct: 14 FDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYI 59
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
LY++ ++ DEL K G + V WW+G+ G+ G+ P+NYV
Sbjct: 8 ALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 55
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
LY++ ++ DEL K G + V WW+G+ G+ G+ P+NYV
Sbjct: 9 ALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 56
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L + LY+++ + E+ +K G +T++++++++WWK + R G+ P+ YV K+
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAGYVKKL 61
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L + LY+++ + E+ +K G +T++++++++WWK + R G+ P+ YV K+
Sbjct: 8 LVLALYDYQEKSPAEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L + LY+++ + E+ +K G +T++++++++WWK + R G+ P+ YV K+
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3
Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured
At Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L + LY+++ + E+ +K G +T++++++++WWK + R G+ P+ YV K+
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 31 NFKSRHADELDLKPGYKVTVI-DTSDQNWWKGKCMGRVGYFPSNYV 75
+FK+ DEL K G + V+ + SDQNW+K + G+ G+ P NY+
Sbjct: 8 DFKATADDELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYI 53
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L + LY+++ + E+ +K G +T++++++++WWK + R G+ P+ YV K+
Sbjct: 8 LVLALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 37/54 (68%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L +VLY+++ + E+ +K G +T++++++++WWK + R G+ P+ Y+ K+
Sbjct: 8 LVLVLYDYQEKSPREVTIKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLKKL 61
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 21 LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
L NL + L++++ H +L + G ++ +++ S + WWK + + G+ G+ P N+V K
Sbjct: 10 LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAKA 68
Query: 79 QPGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLK 134
E NL D E L + G+ G +IR E+ G L
Sbjct: 69 NSLEPEPWFFKNLSRKDAERQL--------LAPGN-THGSFLIRESESTAGSFSLS 115
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L + LY+++ + E+ +K G +T++++++++WWK + R G+ P+ YV K+
Sbjct: 7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 60
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l
Mutant
Length = 62
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 37/55 (67%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L +VLY+++ + E+ +K G +T++++++++WWK + R G+ P+ Y+ K+
Sbjct: 7 ELVLVLYDYQEKSPREVTVKKGDILTLLNSTNKDWWKVEVDDRQGFIPAAYLKKL 61
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYVIKV 78
+ V LY++ S D+L + G ++ V++ S + WWK + + + GY PSNYV +V
Sbjct: 5 IVVALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARV 59
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 21 LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
L NL + L++++ H +L + G ++ +++ S + WWK + + G+ G+ P N+V K
Sbjct: 10 LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAKA 68
Query: 79 QPGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLK 134
E NL D E L + G+ G +IR E+ G L
Sbjct: 69 NSLEPEPWFFKNLSRKDAERQL--------LAPGN-THGSFLIRESESTAGSFSLS 115
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L + LY+++ + E+ +K G +T++++++++WWK + R G+ P+ YV K+
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVGDRQGFVPAAYVKKL 61
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L + LY+++ + E+ +K G +T++++++++WWK + R G+ P+ YV K+
Sbjct: 19 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 72
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
Length = 167
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPG 81
NL + L++++ H +L + G ++ +++ S + WWK + + G+ G+ P N+V K
Sbjct: 5 NLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAKANSL 63
Query: 82 ERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLK 134
E NL D E L + G+ G +IR E+ G L
Sbjct: 64 EPEPWFFKNLSRKDAERQL--------LAPGN-THGSFLIRESESTAGSFSLS 107
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L + LY+++ + E+ +K G +T++++++++WWK + R G+ P+ YV K+
Sbjct: 3 LVLALYDYQEKGDSEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 56
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKVQ 79
V LY++ +A++L L+ G + +++ S+ WW+ + G+ GY PSNYV + +
Sbjct: 12 VALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 65
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine
Kinase, 20 Structures
Length = 58
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKVQ 79
V LY++ +A++L L+ G + +++ S+ WW+ + G+ GY PSNYV + +
Sbjct: 5 VALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 58
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
++F+++ EL L+ G V + D+NW +G+ GR+G FP+NYV
Sbjct: 14 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYV 59
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 18 HRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYV 75
H++ V LY++ + +DEL + G + V +++WW G G+ GYFP+N+V
Sbjct: 1 HQVDTAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHV 59
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
L+ + + DEL + G + +I +T + WWKG+ G+ G FP N+ +++
Sbjct: 11 TLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQIS 64
>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From
Chicken
Length = 70
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 8/62 (12%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWK--------GKCMGRVGYFPSNYVI 76
L + LY+++ + E+ +K G +T++++++++WWK GK R G+ P+ YV
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANGKTYERQGFVPAAYVK 67
Query: 77 KV 78
K+
Sbjct: 68 KL 69
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 8/62 (12%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWK--------GKCMGRVGYFPSNYVI 76
L + LY+++ + E+ +K G +T++++++++WWK GK R G+ P+ YV
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK 67
Query: 77 KV 78
K+
Sbjct: 68 KL 69
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
V +Y++ DEL + G + VI +D W++G G G FP NYV +
Sbjct: 21 VAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESIS 73
>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|B Chain B, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|C Chain C, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|D Chain D, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
Length = 65
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 8/62 (12%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWK--------GKCMGRVGYFPSNYVI 76
L + LY+++ + E+ +K G +T++++++++WWK GK R G+ P+ YV
Sbjct: 3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK 62
Query: 77 KV 78
K+
Sbjct: 63 KL 64
>pdb|1WXT|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Hypothetical Protein Flj21522
Length = 68
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSN 73
VLY F++R+ EL + G K+ V+D S + W GR GY PSN
Sbjct: 12 VLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSN 57
>pdb|1U5S|A Chain A, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain
And Pinch-1 Lim4 Domain
Length = 71
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDT--SDQNWWKGK-CMGRVGYFPSNYVIKVQPG 81
LY F S +EL+ + G + VI+ +D WWK K G+VG P NYV+ + G
Sbjct: 11 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG 67
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Proline- Serine-Threonine Phosphatase-Interacting
Protein 1
Length = 69
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
+ LY++ +++ DELDL G + VI + WW + G+ G+ P +Y+ K+
Sbjct: 11 YRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLS 64
>pdb|1WX6|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck2
Length = 91
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDT--SDQNWWKGK-CMGRVGYFPSNYVIKVQPG 81
LY F S +EL+ + G + VI+ +D WWK K G+VG P NYV+ + G
Sbjct: 22 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG 78
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKG--KCMGRVGYFPSNYVIKV 78
+ +Y ++ ++ DEL+L+ G +V V+ D W+ G + + G FP NYV V
Sbjct: 10 YRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPV 64
>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase
C, Gamma 2
Length = 69
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRV-GYFPSNYV 75
LY++K++ +DEL G + + WWKG R+ YFPSNYV
Sbjct: 12 ALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYV 60
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 38.9 bits (89), Expect = 0.001, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV-IKV---QPGERP 84
L++ + EL K G + V+D +++ WW G+ G+FP+++V ++V +P +
Sbjct: 36 LWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADDD 95
Query: 85 LQVTHNLQIADGESGLSLLRDQIVIQIGDEV 115
+ N DG + +DQ+ + +E+
Sbjct: 96 APLAGNSGAEDGGAEAQSSKDQMRTNVINEI 126
>pdb|2LMJ|A Chain A, Itk-Sh3
Length = 66
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKVQP 80
+ + LY++++ EL L+ + ++D+S+ +WW+ + G GY PS+Y+++ P
Sbjct: 10 VVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSP 66
>pdb|2RN8|A Chain A, Nmr Structure Note: Murine Itk Sh3 Domain
pdb|2RNA|A Chain A, Itk Sh3 Average Minimized
Length = 64
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKVQP 80
L + LY++++ EL L+ + ++D+S+ +WW+ + G GY PS+Y+++ P
Sbjct: 7 LVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVEKSP 63
>pdb|2K79|A Chain A, Solution Structure Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
pdb|2K7A|A Chain A, Ensemble Structures Of The Binary Complex Between The
Sh3 And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
Length = 63
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKVQP 80
L + LY++++ EL L+ + ++D+S+ +WW+ + G GY PS+Y+++ P
Sbjct: 6 TLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVEKSP 63
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterodimer
Length = 62
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 26 FVVLYNFKSRHADELDLKPGYKV-TVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
++V Y++ + H DEL ++ G + V ++ W +G+ GR G FP N+V +++
Sbjct: 4 YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIK 58
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKV 78
LY+F A++L K G + +I+ ++ WW + GRVG P YV K+
Sbjct: 130 TLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKL 181
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYV 75
+F +Y++ + ADE+ K G + + D+ W G GR G P+NYV
Sbjct: 5 IFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYV 57
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKV 78
LY+F A++L K G + +I+ ++ WW + GRVG P YV K+
Sbjct: 130 TLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKL 181
>pdb|2FRY|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Nck2
Adaptor Protein
Length = 61
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDT--SDQNWWKGK-CMGRVGYFPSNYVI 76
LY F S +EL+ + G + VI+ +D WWK K G+VG P NYV+
Sbjct: 7 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVV 58
>pdb|3RBB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
pdb|3RBB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
Length = 61
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYVIKV 78
+ V LY++ S + +L + G ++ V++ S + WWK + + + GY PSNYV +V
Sbjct: 5 IVVALYDYYSPFSWDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARV 59
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 15 QKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVI---DTSDQNWWKGKCMGRVGYFP 71
+++ L+ + L+++ + DEL + G VTV+ + +WW G+ GY P
Sbjct: 146 EQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205
Query: 72 SNY 74
NY
Sbjct: 206 RNY 208
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain
Of Cd2ap
Length = 57
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 26 FVVLYNFKSRHADELDLKPGYKV-TVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
++V Y++ + H DEL ++ G + V ++ W +G+ GR G FP N+V +++
Sbjct: 3 YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIK 57
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGKC-MGRVGYFPSNYVIKV 78
LY++ + DEL K G ++T + D Q W +G+ G++G +P+NYV +
Sbjct: 8 ALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 60
>pdb|2KYM|A Chain A, Solution Structure Of The Bem1p Sh3-Ci Domain From
L.Elongisporus In Complex With Ste20p Peptide
Length = 120
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVG 68
V LY FK+ DELD+ PG +++ D W+ K + R+G
Sbjct: 7 VTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLG 48
>pdb|2YUQ|A Chain A, Solution Structure Of The Sh3 Domain Of Human Tyrosine-
Protein Kinase ItkTSK
Length = 85
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKVQP 80
+ + LY++++ EL L+ + ++D+S+ +WW+ + G GY PS+Y+++ P
Sbjct: 21 VVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSP 77
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWK-GKCMGRVGYFPSNYV 75
+Y ++++ DE+ + PG +TVI D + W G+C G G FP++Y
Sbjct: 5 AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYC 53
>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Vinexin
Length = 90
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 17 AHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNY 74
+++L V Y FK EL + G + +I ++NW++G+ GR G FP++Y
Sbjct: 11 TYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASY 70
Query: 75 V 75
V
Sbjct: 71 V 71
>pdb|2B86|A Chain A, Solution Structure Of The First Src Homology 3 Domain Of
Nck2
Length = 67
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYV 75
+ + +++ ++ ELD+K ++ ++D S + WW+ + R GY PSNYV
Sbjct: 6 IVIAKWDYTAQQDQELDIKKNERLWLLDDS-KTWWRVRNAANRTGYVPSNYV 56
>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
Solution Of The Second Sh3 Domain From Ponsin
pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
Paxillin Proline Rich Region
Length = 67
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYVIKVQPGERP 84
+ +NF E+ + G ++T++ D+NW++G+ G R G FP YV ++ RP
Sbjct: 10 IAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIK---RP 66
Query: 85 L 85
L
Sbjct: 67 L 67
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
++ LY + S +L G ++ ++ D WW G R G FPSNYV
Sbjct: 11 YIALYPYSSVEPGDLTFTEGEEI-LVTQKDGEWWTGSIGDRSGIFPSNYV 59
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWK--------GKCMGRVGYFPSNYVI 76
L + LY+++ + E+ +K G +T++++++++WWK K R G+ P+ YV
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANDKTYERQGFVPAAYVK 67
Query: 77 KV 78
K+
Sbjct: 68 KL 69
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTS--DQNWWKGKCMGRVGYFPSNYVIKVQP 80
++ + LY F++R+ DE+ G + V + + + W G G G+FP NYV K+
Sbjct: 5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPS 64
Query: 81 GERPLQVT 88
E V+
Sbjct: 65 SENEKAVS 72
>pdb|2M0Y|A Chain A, Solution Structure Of The Sh3 Domain Of Dock180
Length = 74
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 19 RLLPTN----LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM---GRVGYFP 71
R +PT V YN+ +R ADEL L+ G V +++T + W++G + + G FP
Sbjct: 3 RWVPTKREEKYGVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFP 61
Query: 72 SNYV 75
++Y+
Sbjct: 62 ASYI 65
>pdb|2JXB|A Chain A, Structure Of Cd3epsilon-Nck2 First Sh3 Domain Complex
Length = 86
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYV 75
+ + +++ ++ ELD+K ++ ++D S + WW+ + R GY PSNYV
Sbjct: 33 IVIAKWDYTAQQDQELDIKKNERLWLLDDS-KTWWRVRNAANRTGYVPSNYV 83
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV-IKV---QPGER 83
L++ + EL K G + V+D +++ WW G+ G+FP+++V ++V +P +
Sbjct: 41 ALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADD 100
Query: 84 PLQVTHNLQIADG 96
+ N DG
Sbjct: 101 DAPLAGNSGAEDG 113
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 39 ELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
EL K G + V+D S+++WW G+ G+FP+++V
Sbjct: 26 ELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFV 62
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV-IKV---QPGERP 84
L++ + EL K G + V D +++ WW G+ G+FP+++V ++V +P +
Sbjct: 73 LWDHVTXDDQELGFKAGDVIEVXDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADDD 132
Query: 85 LQVTHNLQIADGESGLSLLRDQIVIQIGDEV 115
+ N DG + +DQ + +E+
Sbjct: 133 APLAGNSGAEDGGAEAQSSKDQXRTNVINEI 163
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVG-YFPSNYV 75
L+++K++ DEL + ++ D WW+G G+ +FPSNYV
Sbjct: 11 ALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYV 59
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase
C Gamma-1
Length = 61
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVG-YFPSNYV 75
L+++K++ DEL + ++ D WW+G G+ +FPSNYV
Sbjct: 8 ALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYV 56
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
FV + ++ + +L G K+ ++ + +WW G+ G GY P+N+V K
Sbjct: 10 FVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGK 61
>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
Domain-Containing Protein 1
Length = 70
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYV 75
+ +NF E+ + G ++T++ D+NW++G+ G R G FP YV
Sbjct: 11 IAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 61
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQN---WWKGKCMGRVGYFPSNYVIKVQPG 81
LY+++ + DEL G + +++ +Q+ +W+G+ GR+G FPS V ++ G
Sbjct: 13 ALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSG 69
>pdb|2JW4|A Chain A, Nmr Solution Structure Of The N-Terminal Sh3 Domain Of
Human Nckalpha
Length = 72
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYV 75
+ V +++ ++ ELD+K ++ ++D S ++WW+ + M + G+ PSNYV
Sbjct: 9 VVVAKFDYVAQQEQELDIKKNERLWLLDDS-KSWWRVRNSMNKTGFVPSNYV 59
>pdb|1AWJ|A Chain A, Intramolecular Itk-Proline Complex, Nmr, Minimized
Average Structure
Length = 77
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIK 77
L + LY++++ EL L+ + ++D+S+ +WW+ + G GY PS+Y+++
Sbjct: 22 LVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE 75
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
+VV+ N+K + EL L+ G V VI+ ++ WW G+ P+ Y+
Sbjct: 11 YVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYL 60
>pdb|2JS2|A Chain A, Solution Structure Of First Sh3 Domain Of Adaptor Nck
Length = 63
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYV 75
V +++ ++ ELD+K ++ ++D S ++WW+ + M + G+ PSNYV
Sbjct: 10 VAKFDYVAQQEQELDIKKNERLWLLDDS-KSWWRVRNSMNKTGFVPSNYV 58
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 28 VLYNFKS-RHADELDLKPGYKVTVIDTSDQNWWKG-KCMGRVGYFPSNYV 75
LY F RH L G +T++ D WW+G K G G+FP++YV
Sbjct: 8 TLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYV 57
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 15 QKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQN---WWKGKCMGRVGYFP 71
Q+ ++ + L++++ ++ DEL +K G +T+I D++ WW + + GY P
Sbjct: 162 QEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVP 221
Query: 72 SNYV---IKVQPGERPL 85
N + +++P +R L
Sbjct: 222 RNLLGLYPRIKPRQRSL 238
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1
Bound With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1
Bound With A Synthetic Peptide
Length = 70
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
LY ++++ + L+ +TV++ D WW G+ G+ G+FP +YV
Sbjct: 17 ALYPWRAKKDNHLNFNKNDVITVLEQQDM-WWFGEVQGQKGWFPKSYV 63
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 15 QKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQN---WWKGKCMGRVGYFP 71
Q+ ++ + L++++ ++ DEL +K G +T+I D++ WW + + GY P
Sbjct: 162 QEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVP 221
Query: 72 SNYV---IKVQPGERPL 85
N + +++P +R L
Sbjct: 222 RNLLGLYPRIKPRQRSL 238
>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At S19-P20
Length = 63
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 39 ELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG 81
E+ +K G +T++++++++WWK + R G+ P+ YV K+ G
Sbjct: 5 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG 47
>pdb|3QWY|A Chain A, Ced-2
pdb|3QWY|B Chain B, Ced-2
Length = 308
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYV 75
V + F +L + G ++ ++ ++Q+WW+ + +G G P+NYV
Sbjct: 151 VGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYV 200
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKCMGRVGYFPSNYV 75
+ ++F + DEL + G + +++ D NW++ + G+ G PSNY+
Sbjct: 4 IAKHDFSATADDELSFRKGQILKILNMEDDSNWYRAELDGKEGLIPSNYI 53
>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41
Length = 77
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 39 ELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG 81
E+ +K G +T++++++++WWK + R G+ P+ YV K+ G
Sbjct: 7 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG 49
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
NLFV LY+F + + L + G K+ V+ + W + + G+ PSNY+ V E
Sbjct: 44 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLE 103
Query: 83 R 83
+
Sbjct: 104 K 104
>pdb|3QWX|X Chain X, Ced-2 1-174
Length = 174
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYV 75
V + F +L + G ++ ++ ++Q+WW+ + +G G P+NYV
Sbjct: 122 VGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYV 171
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of
P67phox Complexed With The C-Terminal Tail Region Of
P47phox
Length = 62
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 29/48 (60%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
L+++++ ++L+ + G + V+ ++ W +G+ G+VG FP +V
Sbjct: 10 ALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFV 57
>pdb|2KXD|A Chain A, The Structure Of Sh3-F2
Length = 73
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 34 SRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG 81
S E+ +K G +T++++++++WWK + R G+ P+ YV K+ G
Sbjct: 10 SAGGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG 57
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
+V + + S+ DE+ + G V VI + + WW + +G+ G+ P++Y+ K +
Sbjct: 11 YVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAK 64
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVI 76
+ +++ R A EL K G + + + ++WW+G+ G G P Y++
Sbjct: 10 IAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV 59
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYV 75
+ LY++ ++ DEL+L+ G V V++ D W+ G + G FP NYV
Sbjct: 9 YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYV 60
>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase
Length = 163
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
NLFV LY+F + + L + G K+ V+ + W + + G+ PSNY+ V E
Sbjct: 9 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLE 68
Query: 83 R 83
+
Sbjct: 69 K 69
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
NLFV LY+F + + L + G K+ V+ + + W + + G+ PSNY+ V E
Sbjct: 41 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLE 100
Query: 83 R 83
+
Sbjct: 101 K 101
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
NLFV LY+F + + L + G K+ V+ + W + + G+ PSNY+ V E
Sbjct: 83 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLE 142
Query: 83 R 83
+
Sbjct: 143 K 143
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWK---GKCMGRV--GYFPSNYVIK 77
+V L++FKSR +EL + G V +Q WW + G V GY P NY+ +
Sbjct: 13 YVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAE 69
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYV 75
+ LY++ ++ DEL+L+ G V V++ D W+ G + G FP NYV
Sbjct: 9 YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYV 60
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVG-YFPSNYV 75
L+++K++ DEL + ++ + WW+G G+ +FPSNYV
Sbjct: 11 ALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYV 59
>pdb|2RQV|A Chain A, Solution Structure Of Sh3ci Domain Of Bem1p
Length = 108
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQ 86
+VLY+FK+ ADEL G + + + W+ K +GR+G PG P+
Sbjct: 9 IVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLG----------GPGLVPVG 58
Query: 87 VTHNLQIADG 96
+ IA G
Sbjct: 59 FVSIIDIATG 68
>pdb|2RQW|A Chain A, Solution Structure Of Bem1p Sh3ci Domain Complexed With
Ste20p-Prr Peptide
Length = 105
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQ 86
+VLY+FK+ ADEL G + + + W+ K +GR+G PG P+
Sbjct: 6 IVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLG----------GPGLVPVG 55
Query: 87 VTHNLQIADG 96
+ IA G
Sbjct: 56 FVSIIDIATG 65
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And
Tbc1 Domain Containing 3
Length = 78
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
L +F+ DEL + +T+I D++ W G+ G G+FP+ +V
Sbjct: 12 ALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFV 59
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG---RVGYFPSNYV 75
+Y+ ++ + DEL G + V DQ WW G G R G FP ++V
Sbjct: 7 IYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 56
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKC-MGRVGYFPSNYVIK 77
+ YNF +L G +T++ T D NW+K K +GR G P+NYV K
Sbjct: 15 IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQK 67
>pdb|1Z9Z|A Chain A, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|1Z9Z|B Chain B, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|A Chain A, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain
3
pdb|2V1Q|B Chain B, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain
3
Length = 60
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVI-DTSDQNWWKGKCM--GRVGYFPSNYV 75
+V Y+F + DEL +K G KV ++ D ++WW + + G+ G P+ ++
Sbjct: 6 IVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFI 57
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVI 76
+ +++ R A EL K G + + + +WW+G+ G G P Y++
Sbjct: 13 IAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIV 62
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKVQP 80
L++F ++L K G + + D ++ WW + M G+ G P YV K +P
Sbjct: 6 ALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYVEKCRP 59
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 47 KVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
KVT I+ S Q W+G+C G+ G+FP +V
Sbjct: 132 KVTKINMSGQ--WEGECNGKRGHFPFTHV 158
>pdb|2JT4|A Chain A, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
Length = 71
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVI-DTSDQNWWKGKCM--GRVGYFPSNYV 75
+V Y+F + DEL +K G KV ++ D ++WW + + G+ G P+ ++
Sbjct: 10 IVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFI 61
>pdb|2CSQ|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Rim- Binding Protein 2
Length = 97
Score = 33.5 bits (75), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Query: 14 TQKAHRLLPTNLFVVLYNFK--------SRHADELDLKPGYKVTVIDTSDQN-WWKGKCM 64
T LP +FV L+++ +EL K G + V D + +++G+
Sbjct: 8 TDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETC 67
Query: 65 GRVGYFPSNYVIKVQ 79
R+G P N V ++Q
Sbjct: 68 ARLGLIPCNMVSEIQ 82
>pdb|1ABO|A Chain A, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABO|B Chain B, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABQ|A Chain A, Crystal Structure Of The Unliganded Abl Tyrosine Kinase
Sh3 Domain
Length = 62
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYVIKVQ 79
NLFV LY+F + + L + G K+ V+ + + W + + G+ PSNY+ V
Sbjct: 5 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVN 61
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In
Rho-Gtpase-Activating Protein 4
Length = 76
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
V + + R A EL + G + + + + +WW+G+ G G P Y+
Sbjct: 14 VACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYI 62
>pdb|1CSK|A Chain A, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|B Chain B, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|C Chain C, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|D Chain D, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
Length = 71
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKC-MGRVGYFPSNYVIK 77
+ YNF +L G +T++ T D NW+K K +GR G P+NYV K
Sbjct: 15 IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQK 67
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 33.5 bits (75), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG---RVGYFPSNYV 75
+Y+ ++ + DEL G + V DQ WW G G R G FP ++V
Sbjct: 15 TIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 65
>pdb|1JU5|C Chain C, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 61
Score = 33.5 bits (75), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYVIKVQ 79
NLFV LY+F + + L + G K+ V+ + + W + + G+ PSNY+ V
Sbjct: 3 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVN 59
>pdb|1BBZ|A Chain A, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|C Chain C, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|G Chain G, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|E Chain E, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
Length = 58
Score = 33.5 bits (75), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYVIKVQ 79
NLFV LY+F + + L + G K+ V+ + + W + + G+ PSNY+ V
Sbjct: 1 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVN 57
>pdb|1JEG|A Chain A, Solution Structure Of The Sh3 Domain From C-Terminal Src
Kinase Complexed With A Peptide From The Tyrosine
Phosphatase Pep
Length = 83
Score = 33.1 bits (74), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKC-MGRVGYFPSNYVIK 77
+ YNF +L G +T++ T D NW+K K +GR G P+NYV K
Sbjct: 15 IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQK 67
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 33.1 bits (74), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKCMGRVGYFPSNYV 75
+ ++F + DEL + + +++ D NW++ + G+ G PSNY+
Sbjct: 4 IAKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYI 53
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein
States By Relaxation Dispersion Nmr
Length = 62
Score = 33.1 bits (74), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
Y++ + +EL K+ I+ D +WW G+ G G FPSNYV
Sbjct: 11 YDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 58
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 33.1 bits (74), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
Y++ + +EL K+ I+ D +WW G+ G G FPSNYV
Sbjct: 7 YDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
Y++ + +EL K+ I+ D +WW G+ G G FPSNYV
Sbjct: 8 YDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 55
>pdb|1UE9|A Chain A, Solution Structure Of The Fourth Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 80
Score = 32.7 bits (73), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGR-----VGYFPSNYVIKVQP 80
V + + +++L L PG + ++ + WW+G+ R G+FP+++V + P
Sbjct: 12 VTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGP 69
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 32.7 bits (73), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIKVQPG 81
L++F ++L K G + + D ++ WW + G+ G P YV K +P
Sbjct: 139 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPA 193
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 47 KVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
KVT I+ S Q W+G+C G+ G+FP +V
Sbjct: 265 KVTKINVSGQ--WEGECNGKRGHFPFTHV 291
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 32.7 bits (73), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
L++F EL+ K G + ++ +++W +G G G FP ++V
Sbjct: 9 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 56
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 32.3 bits (72), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGER 83
L ++ ++ + L+ +TV++ +NWW G+ G G+FP +YV K+ PG
Sbjct: 15 ALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYV-KIIPGSE 68
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 32.3 bits (72), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
L++F EL+ K G + ++ +++W +G G G FP ++V
Sbjct: 23 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 70
>pdb|2FPF|A Chain A, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|B Chain B, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|C Chain C, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|D Chain D, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
Length = 71
Score = 32.3 bits (72), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
++ F RH DEL+L+ + V ++ W++ M G G FP+ Y I+V
Sbjct: 11 AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEV 63
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 32.3 bits (72), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIKVQPG 81
L++F ++L K G + + D ++ WW + G+ G P YV K +P
Sbjct: 141 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPA 195
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIKVQPG 81
L++F ++L K G + + D ++ WW + G+ G P YV K +P
Sbjct: 19 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPA 73
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIKVQPG 81
L++F ++L K G + + D ++ WW + G+ G P YV K +P
Sbjct: 139 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPA 193
>pdb|2DL5|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Kiaa0769 Protein
Length = 78
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGKC-MGRVGYFPSNYV 75
V+Y++K+ DEL ++ + VI+ D ++W K + +G+VGY P Y+
Sbjct: 18 VVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYL 67
>pdb|1WXB|A Chain A, Solution Structure Of The Sh3 Domain From Human
Epidermal Growth Factor Receptor Pathway Substrate
8-Like Protein
Length = 68
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSN 73
+LY+F +R+A+EL + + V++ Q WWK + G+ GY P N
Sbjct: 12 ILYDFTARNANELSVLKDEVLEVLEDGRQ-WWKLRSRSGQAGYVPCN 57
>pdb|2EYX|A Chain A, C-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 67
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 31 NFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
N + A L++ KVT I+ S Q W+G+C G+ G+FP +V
Sbjct: 18 NAYDKTALALEVGELVKVTKINVSGQ--WEGECNGKRGHFPFTHV 60
>pdb|1AWO|A Chain A, The Solution Nmr Structure Of Abl Sh3 And Its
Relationship To Sh2 In The Sh(32) Construct, 20
Structures
Length = 62
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYVIKVQ 79
+LFV LY+F + + L + G K+ V+ + + W + + G+ PSNY+ V
Sbjct: 6 SLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVS 62
>pdb|2DMO|A Chain A, Refined Solution Structure Of The 1st Sh3 Domain From
Human Neutrophil Cytosol Factor 2 (Ncf-2)
Length = 68
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 14 TQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSN 73
+ +AHR VL+ F +EL + PG V V+ + NW G+ G P N
Sbjct: 6 SGEAHR--------VLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCN 57
Query: 74 YVIKVQ 79
Y+ V
Sbjct: 58 YLEPVS 63
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
L++F EL+ K G + ++ +++W +G G G FP ++V
Sbjct: 179 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 226
>pdb|3EG0|A Chain A, Crystal Structure Of The N114t Mutant Of Abl-Sh3 Domain
Length = 63
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYVIKVQ 79
NLFV LY+F + + L + G K+ V+ + + W + + G+ PS Y+ V
Sbjct: 6 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSTYITPVN 62
>pdb|2GGR|A Chain A, Solution Structure Of The C-Terminal Sh3 Domain Of
C-Crkii
Length = 76
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 47 KVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
KVT I+ S Q W+G+C G+ G+FP +V
Sbjct: 37 KVTKINVSGQ--WEGECNGKRGHFPFTHV 63
>pdb|3EG1|A Chain A, Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|3EG1|B Chain B, Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|3EG2|A Chain A, Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain
Length = 63
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYVIKV 78
NLFV LY+F + + L + G K+ V+ + + W + + G+ PS Y+ V
Sbjct: 6 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSQYITPV 61
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In
Complex With A Peptide Of Xirp2
Length = 64
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYV 75
+ +Y++ ++ DE+ + G + + D W G GR G P+NY+
Sbjct: 9 YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYI 60
>pdb|1G2B|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At N47-D48
pdb|1TUD|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At N47-D48
Length = 62
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 26/36 (72%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWK 60
L + LY+++ + E+ +K G +T++++++++WWK
Sbjct: 23 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK 58
>pdb|2L3P|A Chain A, Structure Of The Prolyl Cis Isomer Of The Crk Protein
pdb|2L3Q|A Chain A, Structure Of The Prolyl Trans Isomer Of The Crk Protein
Length = 78
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 47 KVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
KVT I+ S Q W+G+C G+ G+FP +V
Sbjct: 47 KVTKINMSGQ--WEGECNGKRGHFPFTHV 73
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
+V + + + DE+ L G V VI WW + GYFPS Y+ K
Sbjct: 84 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQK 135
>pdb|3EG3|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-sh3 Domain
pdb|3EGU|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Length = 63
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYVIKVQ 79
NLFV LY+F + + L + G K+ V+ + + W + + G+ PS Y+ V
Sbjct: 6 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN 62
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
+V + + + DE+ L G V VI WW + GYFPS Y+ K
Sbjct: 84 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQK 135
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
+V + + + DE+ L G V VI WW + GYFPS Y+ K
Sbjct: 84 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQK 135
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
+V + + + DE+ L G V VI WW + GYFPS Y+ K
Sbjct: 83 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQK 134
>pdb|2O88|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|2O88|B Chain B, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
Length = 58
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYVIKVQ 79
NLFV LY+F + + L + G K+ V+ + + W + + G+ PS Y+ V
Sbjct: 1 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN 57
>pdb|2K2M|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3
Binding
Length = 68
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSN 73
Y+F++R++ EL +K + V+D S + WWK + G+ GY P N
Sbjct: 15 YDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDPAGQEGYVPYN 58
>pdb|2ROL|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3
Binding
Length = 64
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIKVQPG 81
Y+F++R++ EL +K + V+D S + WWK + G+ GY P N ++ PG
Sbjct: 14 YDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDPAGQEGYVPYN-ILTPYPG 64
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
L N++ ++ +L G + + D+NW++G+ G G FP++ V
Sbjct: 12 ALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSV 59
>pdb|2FPD|A Chain A, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|B Chain B, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|C Chain C, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|D Chain D, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPE|A Chain A, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|B Chain B, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|C Chain C, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|D Chain D, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|E Chain E, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|F Chain F, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|G Chain G, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|H Chain H, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
Length = 62
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKG--KCMGRVGYFPSNYVIKV 78
++ F RH DEL+L+ + V ++ W++ G G FP+ Y I+V
Sbjct: 8 AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNXRTGARGVFPAYYAIEV 60
>pdb|1AIS|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box
Complex From Pyrococcus Woesei
Length = 200
Score = 29.3 bits (64), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 20 LLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGR--VGYFPSN-YVI 76
L P LFV ++ ++ ADEL L + I+ D+ + +G G+ G + Y+
Sbjct: 99 LTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIA 158
Query: 77 KVQPGERPLQ 86
+ GE+ Q
Sbjct: 159 SLLEGEKRTQ 168
>pdb|1JQQ|A Chain A, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|B Chain B, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|C Chain C, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|D Chain D, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1N5Z|A Chain A, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
pdb|1N5Z|B Chain B, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
Length = 92
Score = 29.3 bits (64), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 28 VLYNFKSRHAD-ELDLKPGYKVTVIDTSD-----QNWWKGKCM-GRVGYFPSNYV 75
LY+F + + E+ LK G + ++ D +WWK + G +GY P NY+
Sbjct: 19 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 73
>pdb|1D3U|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA-
Box Complex From Pyrococcus Woesei
Length = 201
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 20 LLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGR--VGYFPSN-YVI 76
L P LFV ++ ++ ADEL L + I+ D+ + +G G+ G + Y+
Sbjct: 100 LTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIA 159
Query: 77 KVQPGERPLQ 86
+ GE+ Q
Sbjct: 160 SLLEGEKRTQ 169
>pdb|2V1R|A Chain A, Yeast Pex13 Sh3 Domain Complexed With A Peptide From
Pex14 At 2.1 A Resolution
pdb|2V1R|B Chain B, Yeast Pex13 Sh3 Domain Complexed With A Peptide From
Pex14 At 2.1 A Resolution
Length = 80
Score = 29.3 bits (64), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 28 VLYNFKSRHAD-ELDLKPGYKVTVIDTSD-----QNWWKGKCM-GRVGYFPSNYV 75
LY+F + + E+ LK G + ++ D +WWK + G +GY P NY+
Sbjct: 19 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 73
>pdb|1ZUU|A Chain A, Crystal Structure Of The Yeast Bzz1 First Sh3 Domain At
0.97-A Resolution
Length = 58
Score = 29.3 bits (64), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWW---KGKCMGRVGYFPSNYV 75
VLY + + DE+ + PG K++++ + W G G P+ Y+
Sbjct: 6 VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYI 56
>pdb|2DE0|X Chain X, Crystal Structure Of Human Alpha 1,6-fucosyltransferase,
Fut8
Length = 526
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKG--KCMGRVGYFPS 72
+ +Y + R ADE+ ++PG + V + KG + +GR G +PS
Sbjct: 446 IAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPS 493
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 15 QKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSN 73
++H+ ++ + +F ++ +L K G + VI+ WW K G G P
Sbjct: 2 SESHKWSTGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRT 61
Query: 74 YV 75
Y+
Sbjct: 62 YL 63
>pdb|1NM7|A Chain A, Solution Structure Of The Scpex13p Sh3 Domain
Length = 69
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 28 VLYNFKSRHAD-ELDLKPGYKVTVIDTSD-----QNWWKGKCM-GRVGYFPSNYV 75
LY+F + + E+ LK G + ++ D +WWK + G +GY P NY+
Sbjct: 12 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 66
>pdb|2Q3N|B Chain B, Agglutinin From Abrus Precatorius (Apa-I)
pdb|2ZR1|B Chain B, Agglutinin From Abrus Precatorius
pdb|2ZR1|D Chain D, Agglutinin From Abrus Precatorius
Length = 267
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 60 KGKCMGRVGYFPSNYVIKVQPGERPLQVTH-----NLQIADGESGLSL 102
KGKC+ GY P NYV+ + T+ N I + +SGL L
Sbjct: 65 KGKCLTTYGYAPGNYVMIYDCSSAVAEATYWDIWDNGTIINPKSGLVL 112
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
Length = 57
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIK 77
L++F ++L K G + + D ++ WW + G+ G P YV K
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYV 75
+ +Y++ + DE+ + G + + D W G G G P+NYV
Sbjct: 6 YRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYV 57
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIK 77
L++F ++L K G + + D ++ WW + G+ G P YV K
Sbjct: 8 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 58
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From
Oncogene Protein C-Crk
Length = 58
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIK 77
L++F ++L K G + + D ++ WW + G+ G P YV K
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIK 77
L++F ++L K G + + D ++ WW + G+ G P YV K
Sbjct: 8 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 58
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated
N- Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIK 77
L++F ++L K G + + D ++ WW + G+ G P YV K
Sbjct: 5 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 55
>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From
Ste20p
Length = 73
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWW--KGKCMGRVGYFPSNYVIKVQP 80
V LY+F+ + +EL L G V + Q W + + + G P +V +QP
Sbjct: 9 VALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQP 64
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIK 77
L++F ++L K G + + D ++ WW + G+ G P YV K
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 72 SNYVIKVQPGERPLQVTHNLQ-IADGESG 99
S+Y+ PGE PL V H L +GE G
Sbjct: 159 SSYIWFADPGEEPLSVVHELTFFIEGEDG 187
>pdb|2CRE|A Chain A, Solution Structure Of Rsgi Ruh-036, An Sh3 Domain From
Human Cdna
Length = 71
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDT---SDQNWWKGKCMGRVGYFPSN 73
L LY+ +DEL G +T+++ + WWK GR G P+N
Sbjct: 9 LARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPAN 60
>pdb|1VS3|A Chain A, Crystal Structure Of The Trna Pseudouridine Synthase Trua
From Thermus Thermophilus Hb8
pdb|1VS3|B Chain B, Crystal Structure Of The Trna Pseudouridine Synthase Trua
From Thermus Thermophilus Hb8
Length = 249
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 10/45 (22%)
Query: 77 KVQPGERPLQVTHNLQIADGESGL---------SLLRDQIVIQIG 112
+ +PGER L + LQ+A+GE+GL S LR Q+ +G
Sbjct: 160 ETRPGEREL-LEARLQVAEGEAGLEVRLYFRGKSFLRGQVRGMVG 203
>pdb|2HDV|A Chain A, Crystal Structure Of The Src Homology-2 Domain Of The
Adapter Protein Sh2-B
pdb|2HDV|B Chain B, Crystal Structure Of The Src Homology-2 Domain Of The
Adapter Protein Sh2-B
pdb|2HDX|A Chain A, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|B Chain B, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|C Chain C, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|D Chain D, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|E Chain E, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|F Chain F, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
Length = 111
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 106 QIVIQIGDEVDGMVMIRNGENRQGVCPLKY 135
Q+V++ G G+ ++R E R+G C L +
Sbjct: 23 QLVLEGGTGSHGVFLVRQSETRRGECVLTF 52
>pdb|2E5K|A Chain A, Solution Structure Of Sh3 Domain In Suppressor Of T-Cell
Receptor Signaling 1
Length = 94
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVI----DTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
V+Y + ++ DEL+L PG + + ++ + W G + G G P NY+ K
Sbjct: 21 VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKA 77
>pdb|3QIR|A Chain A, Crystal Structure Of Piwil2 Paz Domain
pdb|3QIR|B Chain B, Crystal Structure Of Piwil2 Paz Domain
pdb|3QIR|C Chain C, Crystal Structure Of Piwil2 Paz Domain
pdb|3QIR|D Chain D, Crystal Structure Of Piwil2 Paz Domain
Length = 148
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 19 RLLPTNLFVVLYNFKSRHADELDLK--PGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVI 76
+LL N+ + YN ++ D++D P T+ D GK + + Y+ NY I
Sbjct: 26 KLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSD--------GKEITFLEYYSKNYGI 77
Query: 77 KVQPGERPL 85
V+ ++PL
Sbjct: 78 TVKEEDQPL 86
>pdb|3O7X|A Chain A, Crystal Structure Of Human Hili Paz Domain
pdb|3O7X|B Chain B, Crystal Structure Of Human Hili Paz Domain
pdb|3O7X|C Chain C, Crystal Structure Of Human Hili Paz Domain
pdb|3O7X|D Chain D, Crystal Structure Of Human Hili Paz Domain
Length = 140
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 19 RLLPTNLFVVLYNFKSRHADELDLK--PGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVI 76
+LL N+ + YN ++ D++D P T+ D GK + + Y+ NY I
Sbjct: 26 KLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSD--------GKEITFLEYYSKNYGI 77
Query: 77 KVQPGERPL 85
V+ ++PL
Sbjct: 78 TVKEEDQPL 86
>pdb|1WDX|A Chain A, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|B Chain B, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|C Chain C, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|D Chain D, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
Length = 69
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM---GRV--GYFPSNYV 75
V + +KS + D+L+ + ++ V D W+ G+ G V G FP ++V
Sbjct: 12 VAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV 65
>pdb|1TG0|A Chain A, 0.97-A Structure Of The Sh3 Domain Of Bbc1
pdb|1ZUK|A Chain A, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From
Las17
pdb|1ZUK|B Chain B, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From
Las17
Length = 68
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM---GRV--GYFPSNYV 75
V + +KS + D+L+ + ++ V D W+ G+ G V G FP ++V
Sbjct: 11 VAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV 64
>pdb|3R0X|A Chain A, Crystal Structure Of Selenomethionine Incorporated Apo
D-Serine Deaminase From Salmonella Tyhimurium
Length = 448
Score = 26.6 bits (57), Expect = 4.6, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 45 GYKVTVIDTSDQNWWKGKCMGRVGY----FPSNYVIKVQPGERPLQVTHNLQIADGESGL 100
G+KVTV ++D WK + G + +Y + V+ G + Q N D E+
Sbjct: 181 GFKVTVHXSADARAWKKAKLRSHGVTVVEYEDDYGVAVEQGRKAAQSDPNCFFIDDENSR 240
Query: 101 SLL 103
+L
Sbjct: 241 TLF 243
>pdb|1AOJ|A Chain A, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined
Dimer
pdb|1AOJ|B Chain B, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined
Dimer
pdb|1I07|A Chain A, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I07|B Chain B, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I0C|A Chain A, Eps8 Sh3 Closed Monomer
pdb|1I0C|B Chain B, Eps8 Sh3 Closed Monomer
Length = 60
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSN 73
Y+F +R++ EL + + ++D Q WWK + G G+ P+N
Sbjct: 8 YDFVARNSSELSVMKDDVLEILDDRRQ-WWKVRNASGDSGFVPNN 51
>pdb|2EKH|A Chain A, Solution Structures Of The Sh3 Domain Of Human Kiaa0418
Length = 80
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVI 76
++ ++ E+ G +V V++ + WW + G+ PS+Y++
Sbjct: 11 YMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLV 61
>pdb|3SS7|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.55 A Resolution
pdb|3SS9|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.97 A Resolution
Length = 442
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 45 GYKVTVIDTSDQNWWKGKCMGRVGY----FPSNYVIKVQPGERPLQVTHNLQIADGESGL 100
G+KVTV ++D WK + G + +Y + V+ G + Q N D E+
Sbjct: 183 GFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDENSR 242
Query: 101 SLL 103
+L
Sbjct: 243 TLF 245
>pdb|3R0Z|A Chain A, Crystal Structure Of Apo D-Serine Deaminase From
Salmonella Typhimurium
Length = 448
Score = 25.8 bits (55), Expect = 7.8, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 45 GYKVTVIDTSDQNWWKGKCMGRVGY----FPSNYVIKVQPGERPLQVTHNLQIADGESGL 100
G+KVTV ++D WK + G + +Y + V+ G + Q N D E+
Sbjct: 181 GFKVTVHMSADARAWKKAKLRSHGVTVVEYEDDYGVAVEQGRKAAQSDPNCFFIDDENSR 240
Query: 101 SLL 103
+L
Sbjct: 241 TLF 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,409,534
Number of Sequences: 62578
Number of extensions: 177833
Number of successful extensions: 788
Number of sequences better than 100.0: 289
Number of HSP's better than 100.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 296
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)