Query psy6450
Match_columns 139
No_of_seqs 149 out of 1568
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 18:13:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4226|consensus 99.9 5.1E-23 1.1E-27 147.7 7.7 113 26-139 110-249 (379)
2 KOG4225|consensus 99.8 2.5E-20 5.5E-25 140.8 8.7 116 23-139 230-361 (489)
3 KOG4348|consensus 99.8 1.3E-20 2.9E-25 142.6 4.4 115 23-139 100-318 (627)
4 KOG4226|consensus 99.8 3E-19 6.5E-24 128.5 6.9 111 25-138 6-161 (379)
5 KOG4225|consensus 99.8 2.4E-19 5.3E-24 135.6 6.6 126 13-139 294-489 (489)
6 KOG1029|consensus 99.8 1.6E-19 3.4E-24 144.2 3.6 110 26-137 982-1106(1118)
7 KOG4348|consensus 99.7 1.6E-18 3.4E-23 131.4 -1.4 112 26-139 4-155 (627)
8 KOG1029|consensus 99.7 1.5E-17 3.3E-22 133.0 3.4 112 25-139 695-867 (1118)
9 PF14604 SH3_9: Variant SH3 do 99.6 3E-16 6.4E-21 87.0 5.2 49 28-76 1-49 (49)
10 KOG4792|consensus 99.6 1.6E-16 3.5E-21 111.7 3.9 113 25-138 126-283 (293)
11 PF07653 SH3_2: Variant SH3 do 99.6 1.4E-14 3E-19 82.2 5.9 54 25-78 1-55 (55)
12 PF14604 SH3_9: Variant SH3 do 99.5 1.3E-13 2.9E-18 76.3 5.2 49 87-137 1-49 (49)
13 PF00018 SH3_1: SH3 domain; I 99.4 1.9E-13 4E-18 75.4 5.0 46 27-72 1-48 (48)
14 KOG2070|consensus 99.4 2.9E-13 6.2E-18 104.5 2.8 56 25-80 19-74 (661)
15 smart00326 SH3 Src homology 3 99.4 5.2E-12 1.1E-16 71.4 7.3 54 24-77 3-57 (58)
16 KOG0162|consensus 99.3 1.5E-12 3.3E-17 104.5 5.1 54 24-77 1052-1105(1106)
17 KOG1118|consensus 99.3 1.2E-12 2.5E-17 95.9 3.9 57 24-80 307-363 (366)
18 cd00174 SH3 Src homology 3 dom 99.3 9.2E-12 2E-16 69.5 6.4 51 26-76 2-53 (54)
19 KOG2199|consensus 99.3 6E-13 1.3E-17 100.3 1.0 58 22-79 214-271 (462)
20 PF07653 SH3_2: Variant SH3 do 99.3 9.7E-12 2.1E-16 70.4 5.0 53 85-139 2-55 (55)
21 KOG3632|consensus 99.2 3.4E-11 7.4E-16 99.1 6.1 120 19-138 1134-1306(1335)
22 KOG2996|consensus 99.1 5.5E-11 1.2E-15 93.7 3.1 49 88-138 811-861 (865)
23 PF00018 SH3_1: SH3 domain; I 99.0 6.4E-10 1.4E-14 61.1 5.2 47 86-133 1-48 (48)
24 smart00326 SH3 Src homology 3 99.0 1.1E-09 2.5E-14 61.6 4.9 55 84-139 4-58 (58)
25 cd00174 SH3 Src homology 3 dom 98.9 1.6E-09 3.4E-14 60.2 4.4 52 86-138 3-54 (54)
26 KOG3601|consensus 98.8 5.4E-10 1.2E-14 78.2 0.1 50 26-75 3-53 (222)
27 KOG2199|consensus 98.8 8.6E-10 1.9E-14 83.5 1.0 55 82-138 215-269 (462)
28 KOG2996|consensus 98.8 3.1E-09 6.8E-14 84.0 3.4 53 26-78 808-862 (865)
29 KOG0515|consensus 98.8 2.8E-09 6E-14 83.6 2.5 59 24-82 684-745 (752)
30 KOG2856|consensus 98.8 1.5E-09 3.2E-14 81.6 0.3 54 25-78 416-471 (472)
31 KOG2070|consensus 98.8 3.7E-09 8.1E-14 82.1 2.5 54 84-139 19-72 (661)
32 KOG1264|consensus 98.8 3E-09 6.6E-14 86.8 1.8 57 24-80 775-832 (1267)
33 KOG2546|consensus 98.7 5.4E-09 1.2E-13 79.8 2.4 54 26-79 426-479 (483)
34 KOG1702|consensus 98.7 1.2E-08 2.6E-13 71.2 3.7 56 22-77 206-263 (264)
35 KOG1118|consensus 98.6 1.1E-08 2.4E-13 75.3 1.7 55 83-139 307-361 (366)
36 KOG1843|consensus 98.6 3.8E-08 8.2E-13 74.9 2.9 58 20-77 413-472 (473)
37 KOG2546|consensus 98.6 1.4E-08 3E-13 77.6 0.3 65 66-139 414-478 (483)
38 KOG4278|consensus 98.5 7.9E-08 1.7E-12 77.6 4.4 100 21-131 88-188 (1157)
39 KOG3601|consensus 98.5 6.5E-08 1.4E-12 67.9 3.1 56 23-78 163-218 (222)
40 KOG3875|consensus 98.5 2.4E-08 5.1E-13 73.6 -0.8 58 23-80 268-332 (362)
41 KOG3655|consensus 98.4 1.2E-07 2.7E-12 73.4 2.4 54 25-78 429-483 (484)
42 KOG1264|consensus 98.2 5.4E-07 1.2E-11 74.1 2.3 56 83-139 775-830 (1267)
43 KOG3523|consensus 98.2 9.7E-08 2.1E-12 75.9 -1.9 61 22-82 607-669 (695)
44 KOG2856|consensus 98.2 3.6E-07 7.7E-12 69.0 -0.2 56 83-139 415-471 (472)
45 KOG3655|consensus 98.1 7.6E-07 1.7E-11 69.1 1.2 57 82-139 427-483 (484)
46 KOG0162|consensus 98.1 1.6E-06 3.5E-11 70.6 2.6 55 83-139 1052-1106(1106)
47 KOG0197|consensus 98.1 1.2E-06 2.6E-11 68.7 1.7 56 23-78 11-69 (468)
48 KOG3875|consensus 97.9 2.7E-06 5.9E-11 63.0 0.3 55 84-139 270-330 (362)
49 KOG4792|consensus 97.9 2.7E-06 5.8E-11 60.6 0.2 53 85-138 127-179 (293)
50 KOG3557|consensus 97.9 4.5E-06 9.7E-11 67.1 0.8 59 22-81 499-558 (721)
51 KOG0515|consensus 97.8 5.2E-06 1.1E-10 65.6 0.7 52 84-137 685-739 (752)
52 KOG4429|consensus 97.8 1.1E-05 2.4E-10 59.6 1.8 54 24-77 364-417 (421)
53 KOG2222|consensus 97.8 3.5E-06 7.5E-11 66.0 -1.2 56 25-80 550-605 (848)
54 KOG1702|consensus 97.7 6.3E-05 1.4E-09 52.9 4.2 56 83-139 208-264 (264)
55 KOG2528|consensus 97.6 1.6E-05 3.5E-10 61.5 0.9 55 25-79 4-60 (490)
56 KOG3775|consensus 97.6 3.1E-05 6.7E-10 58.9 2.1 56 26-81 265-322 (482)
57 KOG4773|consensus 97.6 5.7E-06 1.2E-10 62.1 -1.7 54 26-79 178-231 (386)
58 KOG1451|consensus 97.6 8.7E-05 1.9E-09 59.5 4.7 68 10-77 743-811 (812)
59 KOG3523|consensus 97.5 1.1E-05 2.4E-10 64.6 -2.1 56 83-139 609-665 (695)
60 KOG0609|consensus 97.3 7E-05 1.5E-09 59.3 0.4 53 24-76 215-279 (542)
61 KOG4575|consensus 97.2 0.00051 1.1E-08 55.6 4.8 56 24-79 9-66 (874)
62 KOG2528|consensus 97.2 0.00014 3.1E-09 56.4 1.2 55 84-139 4-59 (490)
63 KOG3771|consensus 97.2 0.00041 8.8E-09 54.3 3.3 52 25-76 402-454 (460)
64 KOG3557|consensus 96.9 0.00016 3.6E-09 58.4 -0.8 53 84-138 502-554 (721)
65 PF08239 SH3_3: Bacterial SH3 96.8 0.0043 9.3E-08 34.4 4.6 38 100-137 17-55 (55)
66 KOG2222|consensus 96.7 0.00012 2.6E-09 57.6 -2.7 55 82-138 548-602 (848)
67 KOG3725|consensus 96.7 0.00039 8.4E-09 50.7 0.0 55 24-78 318-374 (375)
68 KOG3632|consensus 96.7 0.0012 2.7E-08 55.9 2.7 55 84-139 1140-1202(1335)
69 KOG3725|consensus 96.5 0.00034 7.3E-09 51.0 -1.6 56 82-139 317-374 (375)
70 PF14603 hSH3: Helically-exten 96.4 0.0056 1.2E-07 37.4 3.4 44 36-79 29-73 (89)
71 PF14603 hSH3: Helically-exten 96.4 0.0043 9.3E-08 37.9 2.9 39 98-136 31-69 (89)
72 KOG4773|consensus 96.3 0.00072 1.6E-08 51.1 -0.8 53 85-139 178-230 (386)
73 KOG3565|consensus 96.1 0.0019 4.1E-08 53.2 0.6 61 19-79 574-637 (640)
74 smart00287 SH3b Bacterial SH3 96.1 0.015 3.3E-07 32.9 4.3 38 100-137 25-62 (63)
75 PF08239 SH3_3: Bacterial SH3 95.8 0.024 5.2E-07 31.3 4.2 36 41-76 18-55 (55)
76 KOG4429|consensus 95.7 0.0027 5.8E-08 47.2 0.1 51 87-139 368-418 (421)
77 KOG1843|consensus 95.7 0.0048 1E-07 47.7 1.3 53 84-138 418-472 (473)
78 KOG0199|consensus 95.6 0.018 3.9E-07 48.0 4.2 51 26-76 377-430 (1039)
79 KOG3775|consensus 95.6 0.01 2.2E-07 45.6 2.5 54 85-139 265-319 (482)
80 KOG4278|consensus 95.3 0.016 3.6E-07 47.8 2.9 53 84-138 92-145 (1157)
81 KOG4575|consensus 94.7 0.031 6.8E-07 45.7 3.1 52 84-137 10-63 (874)
82 PRK10884 SH3 domain-containing 94.5 0.049 1.1E-06 38.8 3.4 39 100-138 48-87 (206)
83 smart00287 SH3b Bacterial SH3 94.4 0.12 2.6E-06 29.1 4.4 36 40-75 25-61 (63)
84 KOG1451|consensus 94.1 0.046 9.9E-07 44.5 2.8 45 94-139 767-812 (812)
85 KOG3812|consensus 94.0 0.024 5.1E-07 43.2 1.0 47 26-72 61-117 (475)
86 PRK10884 SH3 domain-containing 93.8 0.09 1.9E-06 37.5 3.7 40 40-79 48-89 (206)
87 KOG3771|consensus 93.8 0.031 6.6E-07 44.1 1.3 51 84-135 402-457 (460)
88 PF06347 SH3_4: Bacterial SH3 93.7 0.19 4.2E-06 27.7 4.2 35 100-136 19-53 (55)
89 KOG0197|consensus 93.4 0.017 3.7E-07 45.8 -0.6 54 84-138 13-68 (468)
90 KOG3705|consensus 92.6 0.15 3.1E-06 39.9 3.4 53 25-77 511-565 (580)
91 PF06347 SH3_4: Bacterial SH3 92.6 0.35 7.7E-06 26.6 4.2 35 40-75 19-53 (55)
92 COG3103 SH3 domain protein [Si 92.1 0.28 6E-06 35.0 4.0 39 100-138 48-87 (205)
93 PRK13914 invasion associated s 91.1 0.37 8E-06 38.6 4.2 39 100-138 103-141 (481)
94 KOG0609|consensus 90.6 0.06 1.3E-06 43.2 -0.6 54 84-137 216-279 (542)
95 COG3103 SH3 domain protein [Si 90.4 0.56 1.2E-05 33.5 4.3 96 40-137 48-150 (205)
96 KOG0040|consensus 88.8 0.0074 1.6E-07 53.5 -7.2 56 26-81 971-1026(2399)
97 KOG3565|consensus 87.1 0.14 3.1E-06 42.4 -0.7 53 86-139 582-636 (640)
98 PRK13914 invasion associated s 86.0 1.4 3.1E-05 35.4 4.4 39 40-78 103-142 (481)
99 smart00743 Agenet Tudor-like d 83.5 2.3 5.1E-05 23.7 3.5 23 41-63 2-24 (61)
100 PF11302 DUF3104: Protein of u 79.2 2.4 5.2E-05 25.2 2.5 23 100-122 4-32 (75)
101 KOG0199|consensus 78.0 2.8 6E-05 35.7 3.4 43 95-137 386-430 (1039)
102 KOG0040|consensus 77.2 0.061 1.3E-06 48.1 -6.4 54 84-139 970-1023(2399)
103 KOG3812|consensus 77.1 1.1 2.4E-05 34.5 0.8 36 99-134 81-118 (475)
104 PF12913 SH3_6: SH3 domain of 73.0 10 0.00022 21.1 3.8 34 39-72 20-54 (54)
105 KOG3705|consensus 63.1 5.1 0.00011 31.7 1.7 46 93-138 519-565 (580)
106 KOG3580|consensus 53.5 30 0.00066 29.1 4.7 50 25-74 506-564 (1027)
107 KOG4384|consensus 51.1 8.7 0.00019 29.7 1.3 54 26-79 139-194 (361)
108 cd05705 S1_Rrp5_repeat_hs14 S1 45.2 51 0.0011 19.1 3.8 30 103-133 2-33 (74)
109 PF05641 Agenet: Agenet domain 43.2 33 0.00072 19.6 2.7 22 42-63 1-25 (68)
110 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 37.9 51 0.0011 19.4 3.0 32 103-135 5-38 (86)
111 COG3807 Uncharacterized protei 34.6 91 0.002 21.3 4.0 35 40-75 59-94 (171)
112 PF00575 S1: S1 RNA binding do 31.5 1E+02 0.0022 17.3 3.9 33 103-136 3-37 (74)
113 smart00316 S1 Ribosomal protei 28.0 1.1E+02 0.0023 16.5 3.2 19 116-135 16-34 (72)
114 PF00027 cNMP_binding: Cyclic 26.8 85 0.0018 17.8 2.7 22 101-122 3-24 (91)
115 smart00333 TUDOR Tudor domain. 25.1 1.2E+02 0.0026 16.1 3.6 22 41-63 2-23 (57)
116 PRK13545 tagH teichoic acids e 22.8 1.2E+02 0.0026 25.2 3.5 37 45-81 375-417 (549)
117 cd04454 S1_Rrp4_like S1_Rrp4_l 22.7 1.7E+02 0.0037 16.9 4.1 34 103-136 5-39 (82)
118 cd05706 S1_Rrp5_repeat_sc10 S1 21.8 1.6E+02 0.0035 16.4 3.4 19 116-135 17-35 (73)
119 KOG2130|consensus 20.3 1.7E+02 0.0036 22.8 3.6 25 36-64 261-285 (407)
No 1
>KOG4226|consensus
Probab=99.88 E-value=5.1e-23 Score=147.75 Aligned_cols=113 Identities=27% Similarity=0.519 Sum_probs=96.3
Q ss_pred EEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCCC-----------------------
Q psy6450 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE----------------------- 82 (139)
Q Consensus 26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~----------------------- 82 (139)
+.+.|.|.++.++||+|.+|+.+.|.++..++||+|..+|+.||||++|+.+..+..
T Consensus 110 AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~ds~~gd~~s~~~~~~~A~a~n~~~s~ 189 (379)
T KOG4226|consen 110 AVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEVDSAAGDSPSFLSLRKAASASNGQGSR 189 (379)
T ss_pred eEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehhccccccCCccceecchhhcccCCCCce
Confidence 788999999999999999999999999999999999999999999999998754331
Q ss_pred --ccceeccccccccCCCceeeecCcEEEE--EcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450 83 --RPLQVTHNLQIADGESGLSLLRDQIVIQ--IGDEVDGMVMIRNGENRQGVCPLKYLQEV 139 (139)
Q Consensus 83 --~~~~~~~~~~~~~~~~~l~~~~g~~v~~--~~~~~~g~~~~~~~~~~~G~~P~~~v~~~ 139 (139)
..+.+.+.|. +.++.||+|.+||.+-+ ....+..||++|+..|++|+||.|||+.+
T Consensus 190 vl~vVvaLYsFs-ssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl 249 (379)
T KOG4226|consen 190 VLHVVVALYSFS-SSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVL 249 (379)
T ss_pred EEEEEEEEeccc-CCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEe
Confidence 0234566664 77788999999998733 34566799999999999999999999864
No 2
>KOG4225|consensus
Probab=99.83 E-value=2.5e-20 Score=140.83 Aligned_cols=116 Identities=28% Similarity=0.474 Sum_probs=100.6
Q ss_pred ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC----CC-----------cccee
Q psy6450 23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP----GE-----------RPLQV 87 (139)
Q Consensus 23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~----~~-----------~~~~~ 87 (139)
...++|+|+|.++...||.|.+||+|.|+.+.+..|++|..+|+.|+||++||+.+.. .. ....+
T Consensus 230 ~~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~~e~~qP~~~~P~q~~~~g~a~A 309 (489)
T KOG4225|consen 230 KRAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTPREKAQPARPPPQQVLEQGEAIA 309 (489)
T ss_pred cchhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCcccccCcCCCCcccccccccccc
Confidence 3448999999999999999999999999999999999999999999999999998875 11 13566
Q ss_pred ccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC-CCeEEeeecCCEEeC
Q psy6450 88 THNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG-ENRQGVCPLKYLQEV 139 (139)
Q Consensus 88 ~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~-~~~~G~~P~~~v~~~ 139 (139)
.++|. +...-|+++.+|+.|.+....+..|+..+.. .+++|+||.+||+.+
T Consensus 310 ~y~F~-~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~ 361 (489)
T KOG4225|consen 310 KYNFN-ADSPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVI 361 (489)
T ss_pred cCCCC-CCCchhcccccCceEEEEEeccCceeeccccccccccccchhHhhhh
Confidence 77775 7788899999999999888888899988876 458899999999863
No 3
>KOG4348|consensus
Probab=99.81 E-value=1.3e-20 Score=142.59 Aligned_cols=115 Identities=28% Similarity=0.492 Sum_probs=94.7
Q ss_pred ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCCCc-------------------
Q psy6450 23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGER------------------- 83 (139)
Q Consensus 23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~------------------- 83 (139)
.+.|++.|.|.+++++||.|+.||+|.+++....|||.|..+|..|+||.||+..+.....
T Consensus 100 ~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~~sde~~~aqd~~~S~stlagst 179 (627)
T KOG4348|consen 100 ARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPTPSDESAAAQDPAASASTLAGST 179 (627)
T ss_pred ceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCCCCcchhhhcCcccchhhhcCcC
Confidence 4569999999999999999999999999999999999999999999999999987652110
Q ss_pred --------------------------------------------------------------------------------
Q psy6450 84 -------------------------------------------------------------------------------- 83 (139)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (139)
T Consensus 180 ~~~ps~s~~SE~a~gsv~qPKkI~g~gfgdIfk~~pVklr~rt~~sete~~p~~~~i~~~l~asT~s~d~tktd~~~~tK 259 (627)
T KOG4348|consen 180 ARTPSKSIGSEVAMGSVTQPKKIDGTGFGDIFKPAPVKLRLRTKFSETEKKPEKPFISSALSASTQSVDITKTDTAETTK 259 (627)
T ss_pred CCCCcccccchhhcccccCcccccCCCcccccCCccceecccccccccccccccchhhhccCccccCccccccccccchh
Confidence
Q ss_pred ---cceeccccccccCCCceeeecCcEEEE--EcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450 84 ---PLQVTHNLQIADGESGLSLLRDQIVIQ--IGDEVDGMVMIRNGENRQGVCPLKYLQEV 139 (139)
Q Consensus 84 ---~~~~~~~~~~~~~~~~l~~~~g~~v~~--~~~~~~g~~~~~~~~~~~G~~P~~~v~~~ 139 (139)
..++.+.| .+++++||.+++||+++. ..+.+.|||.++ .+|+.|+||.|||+.|
T Consensus 260 tKeycrv~F~Y-e~qndDELt~KEgdil~lItK~cgdaGWweGE-LnGk~GvFPDNFv~lv 318 (627)
T KOG4348|consen 260 TKEYCRVKFVY-EPQNDDELTLKEGDILILITKNCGDAGWWEGE-LNGKKGVFPDNFVELV 318 (627)
T ss_pred hhhheeeeeee-cCCCccceeeccccEEEEecccccccceeeee-ecCccccCCchhhhhc
Confidence 12344555 488899999999998844 466677999555 4559999999999764
No 4
>KOG4226|consensus
Probab=99.78 E-value=3e-19 Score=128.47 Aligned_cols=111 Identities=28% Similarity=0.527 Sum_probs=93.0
Q ss_pred EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCCCC---------------------
Q psy6450 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQPGE--------------------- 82 (139)
Q Consensus 25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~~--------------------- 82 (139)
.++|.|||.++.++||.+++.+.+-+++. ...||+.++ ..++|++|++||+.-....
T Consensus 6 ~vvak~dy~aq~~qeldikkner~~lldd-sk~wwrvrns~n~tgyvpsnyverkn~~~~~si~knlkd~~g~kt~~k~s 84 (379)
T KOG4226|consen 6 IVVAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNSANRTGYVPSNYVERKNSLKKGSIVKNLKDTLGLKTRRKTS 84 (379)
T ss_pred EEEEEechhcccchhccccccceEEEEcC-CccceeeecccccCCcccchhhhcccchhhhHHHHhhhhccccccccCCC
Confidence 47899999999999999999999988875 458999999 6789999999998543110
Q ss_pred -----------------------ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450 83 -----------------------RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE 138 (139)
Q Consensus 83 -----------------------~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~ 138 (139)
.++.+.+.| .++.++||++.+|..|++.+...+|||++.. +|+.||||+|||++
T Consensus 85 ~~~~~~sp~~d~~~ppd~~~~~~t~AvVKf~Y-~a~~eDELsLtKGtrv~vmEKssDGWWrG~~-ng~VGWFPSNYv~E 161 (379)
T KOG4226|consen 85 ARDASPSPSTDAEYPPDRIYDLNTPAVVKFNY-VAEREDELSLTKGTRVTVMEKSSDGWWRGSY-NGQVGWFPSNYVTE 161 (379)
T ss_pred ccccCCCCCccccCCcchhhhcCCceEEEEee-ccccccccccccCcEEEEEEeccCcceeccc-CCeeccccccceeh
Confidence 023345666 4888999999999999999999999998777 66999999999986
No 5
>KOG4225|consensus
Probab=99.78 E-value=2.4e-19 Score=135.57 Aligned_cols=126 Identities=24% Similarity=0.424 Sum_probs=104.6
Q ss_pred CCccccCCCCccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCCCCc-------
Q psy6450 13 LTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQPGER------- 83 (139)
Q Consensus 13 ~~~~~~~~~~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~~~------- 83 (139)
..++++..++...++|+|+|.+..+.||++++|+.|.++...+..|.+|.+ .++.|+||.+||+.+.....
T Consensus 294 ~~~~P~q~~~~g~a~A~y~F~~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~~~~~~~~~~~~~ 373 (489)
T KOG4225|consen 294 ARPPPQQVLEQGEAIAKYNFNADSPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVIKSPKLELPLDYP 373 (489)
T ss_pred CCCCcccccccccccccCCCCCCCchhcccccCceEEEEEeccCceeeccccccccccccchhHhhhhhccccccccccC
Confidence 334555666666699999999999999999999999999999999999999 47899999999987652100
Q ss_pred ------------------------------------------------------------cceeccccccccCCCceeee
Q psy6450 84 ------------------------------------------------------------PLQVTHNLQIADGESGLSLL 103 (139)
Q Consensus 84 ------------------------------------------------------------~~~~~~~~~~~~~~~~l~~~ 103 (139)
..+|.+.|. +++++||-|.
T Consensus 374 ~~p~~p~~s~~~~~~~~~s~~~~~~~~~t~~~~q~~~n~~qepr~~~~~~~~~qt~~~~l~yrAly~Y~-pqnedeLEl~ 452 (489)
T KOG4225|consen 374 DLPIPPRSSNELRPLSEDSMKNAWPQTHTQSSTQPPENFPQEPRVTEKNDAHSQTSSEPLKYRALYSYR-PQNEDELELR 452 (489)
T ss_pred CCCCCcccchhhcccccchhhhcccccccccccCCCCCcccccccccccCcccCCCCCcccceeccccC-CCCchhheec
Confidence 236777884 8899999999
Q ss_pred cCcEEEEEcceeCCEEEEE-eCCCeEEeeecCCEEeC
Q psy6450 104 RDQIVIQIGDEVDGMVMIR-NGENRQGVCPLKYLQEV 139 (139)
Q Consensus 104 ~g~~v~~~~~~~~g~~~~~-~~~~~~G~~P~~~v~~~ 139 (139)
+||+|.+...+++|||.+. ...|+.|+||-|||+++
T Consensus 453 egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~~ 489 (489)
T KOG4225|consen 453 EGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKRL 489 (489)
T ss_pred cCCEEeeeecccCcceeccceecccccccCccccccC
Confidence 9999999999999999653 44568899999999874
No 6
>KOG1029|consensus
Probab=99.77 E-value=1.6e-19 Score=144.19 Aligned_cols=110 Identities=22% Similarity=0.527 Sum_probs=96.2
Q ss_pred EEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CC---eEEEEcCCcEEecCCCCc----------cceeccc
Q psy6450 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MG---RVGYFPSNYVIKVQPGER----------PLQVTHN 90 (139)
Q Consensus 26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g---~~G~~P~~~v~~~~~~~~----------~~~~~~~ 90 (139)
+.++-+|.+..+..|++..|++|.|..+..+|||.|.. +| +.||||++||..+.+... .+.++|+
T Consensus 982 AqVia~yvAs~peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s~raTPa~~~v~qviamYd 1061 (1118)
T KOG1029|consen 982 AQVIADYVASGPEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEPGSGRATPATRPVCQVIAMYD 1061 (1118)
T ss_pred hhhhhhhhccCchhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccCCCCcCCCCCCccceeEEeec
Confidence 56688999999999999999999999999999999987 44 469999999998876532 2347899
Q ss_pred cccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEE
Q psy6450 91 LQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQ 137 (139)
Q Consensus 91 ~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~ 137 (139)
|. +++++||+|..||+|.+..+....||.+... |+.|+||+|||+
T Consensus 1062 Y~-AqndDELsF~kgdiI~VlnkdepeWW~Ge~n-g~sGLFPSNYV~ 1106 (1118)
T KOG1029|consen 1062 YE-AQNDDELSFKKGDIINVLNKDEPEWWSGERN-GKSGLFPSNYVQ 1106 (1118)
T ss_pred cc-cCCcccccccCCCEEEecCCCChhhhccccc-CccccCcccccc
Confidence 95 9999999999999999999999999976665 599999999995
No 7
>KOG4348|consensus
Probab=99.69 E-value=1.6e-18 Score=131.44 Aligned_cols=112 Identities=24% Similarity=0.500 Sum_probs=94.4
Q ss_pred EEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC------------------------
Q psy6450 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG------------------------ 81 (139)
Q Consensus 26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~------------------------ 81 (139)
+++-|||.++.++||+++.|++|+-+.+.+.|||.|..+|+.|+||-++|.++...
T Consensus 4 ~ive~dy~a~hddelti~vgeii~nvkk~e~gw~egelngrrg~fpdnfV~eik~e~k~d~l~nk~~r~~l~q~~s~n~l 83 (627)
T KOG4348|consen 4 YIVEYDYDAVHDDELTIRVGEIIRNVKKLEEGWLEGELNGRRGQFPDNFVVEIKVEFKDDDLVNKLSRDSLVQMTSRNPL 83 (627)
T ss_pred eeeecccccccCceeeEeHHHHHHhhhhhccceeeceeccccccCCchhhhhhhhhcccccccccccccchhhcccCCCc
Confidence 56789999999999999999999988888899999999999999999998766411
Q ss_pred ----------------CccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450 82 ----------------ERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139 (139)
Q Consensus 82 ----------------~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~ 139 (139)
....++.+.| ..++++||.|+-||+|-+..+..+|||.+.-. |++|.||+|||.++
T Consensus 84 ~~~q~v~rtn~~~q~~~r~c~v~f~Y-~pqndDELelkVGDiIeli~eVEeGWw~G~Ln-gk~GmFPsNFVkel 155 (627)
T KOG4348|consen 84 TVHQQVERTNPPPQPQARICVVTFAY-SPQNDDELELKVGDIIELISEVEEGWWKGKLN-GKVGMFPSNFVKEL 155 (627)
T ss_pred cccCcccccCCCCCccceeEEEEEee-cCCCCceeeeeeccHHHhhhHhhhhhhhceec-Ccccccchhhceec
Confidence 0023345666 58899999999999998888888999966655 59999999999874
No 8
>KOG1029|consensus
Probab=99.68 E-value=1.5e-17 Score=133.03 Aligned_cols=112 Identities=26% Similarity=0.473 Sum_probs=87.6
Q ss_pred EEEEEeeecCCCCCCcccCCCCEEEEEEC--CCCCeeEEEECCeEEEEcCCcEEecCCCCc-------------------
Q psy6450 25 LFVVLYNFKSRHADELDLKPGYKVTVIDT--SDQNWWKGKCMGRVGYFPSNYVIKVQPGER------------------- 83 (139)
Q Consensus 25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~--~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~------------------- 83 (139)
.|+|+|.|.+.+.+|++|..||+|.|.+. ..+||..|..+|..||||.+||+.+...+.
T Consensus 695 kyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~~~e~p~~v~Pv~~l~~~~~psas 774 (1118)
T KOG1029|consen 695 KYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIPAVETPGGVPPVQNLPPTMTPSAS 774 (1118)
T ss_pred EEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcccCCCCCCCCchhcCCCCCCcccc
Confidence 48999999999999999999999988764 467999999999999999999997763320
Q ss_pred ----------------------------------------cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEe
Q psy6450 84 ----------------------------------------PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRN 123 (139)
Q Consensus 84 ----------------------------------------~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~ 123 (139)
...+.+.+ .+.+++.|+|.+||+|.+.+. .+-||.+ +
T Consensus 775 ~nq~a~~ad~~~~~~n~~~~t~~aA~p~~tapg~~eve~lq~iA~y~w-rakke~dLsFskgd~I~Vlek-qemwW~G-~ 851 (1118)
T KOG1029|consen 775 VNQIAVVADTKNESANAMGLTEGAAPPALTAPGQGEVEILQAIALYPW-RAKKENDLSFSKGDTITVLEK-QEMWWFG-E 851 (1118)
T ss_pred cccceeecccccchhhccCCCCCCCCccccCCCchhhhhhhHHhhccc-cccccccccccCCCeeeeehh-ccceecc-c
Confidence 01122333 255677899999999987766 2445545 6
Q ss_pred CCCeEEeeecCCEEeC
Q psy6450 124 GENRQGVCPLKYLQEV 139 (139)
Q Consensus 124 ~~~~~G~~P~~~v~~~ 139 (139)
..|++||||.+||+++
T Consensus 852 v~g~~GwFPksYVk~~ 867 (1118)
T KOG1029|consen 852 VAGEIGWFPKSYVKEV 867 (1118)
T ss_pred ccCccCcCcHHhhhhc
Confidence 6679999999999853
No 9
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.65 E-value=3e-16 Score=86.97 Aligned_cols=49 Identities=45% Similarity=0.986 Sum_probs=44.9
Q ss_pred EEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEE
Q psy6450 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVI 76 (139)
Q Consensus 28 al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~ 76 (139)
|+|+|.++.++||+|++||+|.|+++.+++||+++++|+.|+||++||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence 6899999999999999999999999988999999999999999999985
No 10
>KOG4792|consensus
Probab=99.64 E-value=1.6e-16 Score=111.66 Aligned_cols=113 Identities=22% Similarity=0.441 Sum_probs=88.6
Q ss_pred EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCCCCc--------------------
Q psy6450 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQPGER-------------------- 83 (139)
Q Consensus 25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~~~-------------------- 83 (139)
+++++|+|.+...++|.|++|+++.|+++.+..||..++ .|+.|++|..||+.......
T Consensus 126 ~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~~~~~~~~ga~e~si~q~~~g 205 (293)
T KOG4792|consen 126 YVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPASASVSALIGGASESSIPQSGGG 205 (293)
T ss_pred heeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhhcccccccCCcccccCCCCCCC
Confidence 478899999999999999999999999999999999999 89999999999986542110
Q ss_pred ---------------------c--ceeccc-cccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450 84 ---------------------P--LQVTHN-LQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE 138 (139)
Q Consensus 84 ---------------------~--~~~~~~-~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~ 138 (139)
+ +++... .-.+.....|.+..||+|.++....+|.|.. +.+|+.|.||.+||+-
T Consensus 206 ~e~~s~a~~s~~~~l~l~~~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqweg-ElnGk~G~fPfThvrf 283 (293)
T KOG4792|consen 206 AERFSSASTSSDTPLPLQQNLPAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEG-ELNGKIGHFPFTHVRF 283 (293)
T ss_pred CCCCCCCCcccCCcCccccCCChheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeee-eecCccccccceeEEe
Confidence 0 001000 0012234459999999999999999999955 4566999999999974
No 11
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.55 E-value=1.4e-14 Score=82.20 Aligned_cols=54 Identities=33% Similarity=0.848 Sum_probs=48.0
Q ss_pred EEEEEeeecCCCCCCcccCCCCEEEEE-ECCCCCeeEEEECCeEEEEcCCcEEec
Q psy6450 25 LFVVLYNFKSRHADELDLKPGYKVTVI-DTSDQNWWKGKCMGRVGYFPSNYVIKV 78 (139)
Q Consensus 25 ~~~al~~~~~~~~~eLs~~~gd~i~v~-~~~~~~w~~~~~~g~~G~~P~~~v~~~ 78 (139)
+++|+++|.+..+++|+|++||+|.|+ +...++||.++.+|+.||||.+|++++
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI 55 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence 478999999999999999999999999 777789999999999999999999863
No 12
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.47 E-value=1.3e-13 Score=76.27 Aligned_cols=49 Identities=22% Similarity=0.405 Sum_probs=41.2
Q ss_pred eccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEE
Q psy6450 87 VTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQ 137 (139)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~ 137 (139)
|.++|. ++.+++|+|.+||+|.+..+..+|||.+++ +|+.|+||++|||
T Consensus 1 Al~~y~-~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~-~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYE-AQDPDELSFKKGDVITVLEKSDDGWWYGRN-TGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBC-SSSTTB-EB-TTEEEEEEEESSTSEEEEEE-TTEEEEEEGGGEE
T ss_pred CCccCC-CCCcCEeeEcCCCEEEEEEeCCCCEEEEEE-CCEEEEECHHhCC
Confidence 457785 778889999999999888878899999998 7799999999997
No 13
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.45 E-value=1.9e-13 Score=75.39 Aligned_cols=46 Identities=39% Similarity=0.853 Sum_probs=42.1
Q ss_pred EEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcC
Q psy6450 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPS 72 (139)
Q Consensus 27 ~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~ 72 (139)
+|+|+|.++.+++|+|++||.+.|++..+++||.++. ++++|+||+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 5899999999999999999999999998889999999 479999995
No 14
>KOG2070|consensus
Probab=99.36 E-value=2.9e-13 Score=104.46 Aligned_cols=56 Identities=36% Similarity=0.801 Sum_probs=53.3
Q ss_pred EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80 (139)
Q Consensus 25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~ 80 (139)
.++|.|.|.+.+.|||+|.+||+|+|++..++|||.|+.+|++||||.+||..+..
T Consensus 19 vvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik~ 74 (661)
T KOG2070|consen 19 VVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIKS 74 (661)
T ss_pred EEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHhh
Confidence 48999999999999999999999999999999999999999999999999998763
No 15
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.36 E-value=5.2e-12 Score=71.37 Aligned_cols=54 Identities=43% Similarity=0.866 Sum_probs=49.9
Q ss_pred cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEEC-CeEEEEcCCcEEe
Q psy6450 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIK 77 (139)
Q Consensus 24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~-g~~G~~P~~~v~~ 77 (139)
..++|+++|.+..+++|+|++||.+.++....++||.+++. ++.|+||.+|++.
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~ 57 (58)
T smart00326 3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEE 57 (58)
T ss_pred cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEE
Confidence 45899999999999999999999999999888899999995 9999999999875
No 16
>KOG0162|consensus
Probab=99.33 E-value=1.5e-12 Score=104.50 Aligned_cols=54 Identities=33% Similarity=0.765 Sum_probs=51.6
Q ss_pred cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEe
Q psy6450 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77 (139)
Q Consensus 24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~ 77 (139)
..|.|+|+|.++..+||+|++||+|.|+.++.+|||.|+.+|++||||.+|+.+
T Consensus 1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCcccccccccccc
Confidence 469999999999999999999999999999999999999999999999999975
No 17
>KOG1118|consensus
Probab=99.32 E-value=1.2e-12 Score=95.89 Aligned_cols=57 Identities=37% Similarity=0.719 Sum_probs=53.8
Q ss_pred cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80 (139)
Q Consensus 24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~ 80 (139)
..|+|+|||++++..||.|+.||+|.++...+.+||.|...|..|+||.+||+.+.+
T Consensus 307 p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlvp 363 (366)
T KOG1118|consen 307 PCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLVP 363 (366)
T ss_pred hhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEecc
Confidence 349999999999999999999999999999999999999999999999999998765
No 18
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.31 E-value=9.2e-12 Score=69.46 Aligned_cols=51 Identities=43% Similarity=0.959 Sum_probs=47.2
Q ss_pred EEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECC-eEEEEcCCcEE
Q psy6450 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG-RVGYFPSNYVI 76 (139)
Q Consensus 26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g-~~G~~P~~~v~ 76 (139)
++++|+|.+..+++|+|++||.+.+++...++||.+++.+ +.|+||.+|++
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence 6899999999999999999999999998788999999955 99999999975
No 19
>KOG2199|consensus
Probab=99.29 E-value=6e-13 Score=100.30 Aligned_cols=58 Identities=40% Similarity=0.744 Sum_probs=53.3
Q ss_pred CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecC
Q psy6450 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79 (139)
Q Consensus 22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~ 79 (139)
..+.++|||||.+..++||+|++||+|.|++..+..||.|.+.+..|+||.+||...-
T Consensus 214 ~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 214 VVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTADL 271 (462)
T ss_pred cchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhhh
Confidence 3445999999999999999999999999999999999999999999999999997644
No 20
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.27 E-value=9.7e-12 Score=70.39 Aligned_cols=53 Identities=21% Similarity=0.408 Sum_probs=43.3
Q ss_pred ceeccccccccCCCceeeecCcEEEEE-cceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450 85 LQVTHNLQIADGESGLSLLRDQIVIQI-GDEVDGMVMIRNGENRQGVCPLKYLQEV 139 (139)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~g~~v~~~-~~~~~g~~~~~~~~~~~G~~P~~~v~~~ 139 (139)
.++..+|. +..+++|++.+||+|.+. ....+|||+++. +|+.|+||.+||+.+
T Consensus 2 ~~a~~d~~-~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~-~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 2 YRAIFDYV-AEDPDELSFKKGDVIEVLGEKDDDGWWLGEN-NGRRGWFPSSYVEEI 55 (55)
T ss_dssp EEESSSBE-SSSTTB-EB-TTEEEEEEEEECSTSEEEEEE-TTEEEEEEGGGEEEH
T ss_pred EEEeEEEC-CCCCCceEEecCCEEEEEEeecCCCEEEEEE-CCcEEEEcHHHEEEC
Confidence 46778885 678889999999999776 667789999999 779999999999863
No 21
>KOG3632|consensus
Probab=99.19 E-value=3.4e-11 Score=99.13 Aligned_cols=120 Identities=21% Similarity=0.444 Sum_probs=92.4
Q ss_pred CCCCccEEEEEeeecCC--------CCCCcccCCCCEEEEEEC-CCCCeeEEEECCeEEEEcCCcEEecCCCC-------
Q psy6450 19 RLLPTNLFVVLYNFKSR--------HADELDLKPGYKVTVIDT-SDQNWWKGKCMGRVGYFPSNYVIKVQPGE------- 82 (139)
Q Consensus 19 ~~~~~~~~~al~~~~~~--------~~~eLs~~~gd~i~v~~~-~~~~w~~~~~~g~~G~~P~~~v~~~~~~~------- 82 (139)
..++...++|+|||.+- ...||.|++|++|.|+.. +.++++.|..+|+.|+||.++|.++.-..
T Consensus 1134 ~~lparifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~eq~~~r~ 1213 (1335)
T KOG3632|consen 1134 AALPARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPVDNEQTDRRW 1213 (1335)
T ss_pred ccCcceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccccCCcHHHHHHH
Confidence 45677789999999873 356799999999999864 45789999999999999999998765221
Q ss_pred -----c--------------------------cceecccccccc------CCCceeeecCcEEEEEcceeCCEEEEEeCC
Q psy6450 83 -----R--------------------------PLQVTHNLQIAD------GESGLSLLRDQIVIQIGDEVDGMVMIRNGE 125 (139)
Q Consensus 83 -----~--------------------------~~~~~~~~~~~~------~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~ 125 (139)
+ ...+.++|...+ .+.++.|..||||.+.+..+++-|..+..+
T Consensus 1214 rqG~lPsv~~~e~~~gs~~s~g~~k~vp~~p~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGeln 1293 (1335)
T KOG3632|consen 1214 RQGLLPSVPTEEMRKGSAFSDGQQKMVPWPPRQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGELN 1293 (1335)
T ss_pred HhccCCCCCchhhhcccccCCCCccccCCchhhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCcccccccC
Confidence 0 112344553211 145699999999988877777776678888
Q ss_pred CeEEeeecCCEEe
Q psy6450 126 NRQGVCPLKYLQE 138 (139)
Q Consensus 126 ~~~G~~P~~~v~~ 138 (139)
|++|++|++|++.
T Consensus 1294 gqkglvpsnfle~ 1306 (1335)
T KOG3632|consen 1294 GQKGLVPSNFLEA 1306 (1335)
T ss_pred CccCccccccccC
Confidence 8999999999985
No 22
>KOG2996|consensus
Probab=99.09 E-value=5.5e-11 Score=93.72 Aligned_cols=49 Identities=24% Similarity=0.215 Sum_probs=37.1
Q ss_pred ccccccccCCCceeeecCcEEEEE--cceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450 88 THNLQIADGESGLSLLRDQIVIQI--GDEVDGMVMIRNGENRQGVCPLKYLQE 138 (139)
Q Consensus 88 ~~~~~~~~~~~~l~~~~g~~v~~~--~~~~~g~~~~~~~~~~~G~~P~~~v~~ 138 (139)
.++| .++...+|++++||+|.+. ...+.|||.++..+ +.||||++|||+
T Consensus 811 rYdf-~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevng-rvGwFPstYVee 861 (865)
T KOG2996|consen 811 RYDF-CARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNG-RVGWFPSTYVEE 861 (865)
T ss_pred cccc-CCCchhhcccccCCEEEEehhccccCceecceecC-cccccccccccc
Confidence 3444 2555667999999998443 34558999777665 999999999985
No 23
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.04 E-value=6.4e-10 Score=61.12 Aligned_cols=47 Identities=21% Similarity=0.368 Sum_probs=39.9
Q ss_pred eeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCC-CeEEeeec
Q psy6450 86 QVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGE-NRQGVCPL 133 (139)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~-~~~G~~P~ 133 (139)
+|.++|. +...++|++.+||.+.+.....+|||.++..+ ++.|+||+
T Consensus 1 ~Alydf~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFD-AEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBE-TSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeC-CCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 4678886 77788999999999988888888999999887 59999996
No 24
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=98.98 E-value=1.1e-09 Score=61.57 Aligned_cols=55 Identities=22% Similarity=0.403 Sum_probs=46.4
Q ss_pred cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450 84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139 (139)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~ 139 (139)
...+.++|. +...++|++.+||.+.+.....+|||.++..+++.|+||.+|++.+
T Consensus 4 ~~~a~~~~~-~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~~ 58 (58)
T smart00326 4 QVRALYDYT-AQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEEI 58 (58)
T ss_pred EEEEeeeeC-CCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEEC
Confidence 356777885 6777889999999997777768999999988789999999999864
No 25
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=98.94 E-value=1.6e-09 Score=60.20 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=44.0
Q ss_pred eeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450 86 QVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE 138 (139)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~ 138 (139)
.+.++|. +..++++++.+||.+.+.....+|||.++...++.|+||.+||+.
T Consensus 3 ~a~~~~~-~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~ 54 (54)
T cd00174 3 RALYDYD-ARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVEE 54 (54)
T ss_pred EEEEeeC-CCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCcC
Confidence 4667775 666789999999999777777899999998888999999999863
No 26
>KOG3601|consensus
Probab=98.84 E-value=5.4e-10 Score=78.16 Aligned_cols=50 Identities=28% Similarity=0.551 Sum_probs=42.9
Q ss_pred EEEEeeecCCCCCCcccCCCCEEEEEECCC-CCeeEEEECCeEEEEcCCcE
Q psy6450 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGKCMGRVGYFPSNYV 75 (139)
Q Consensus 26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v 75 (139)
++++++|.+...+||+|.+|+.+.++...+ -.|......|..|++|.++.
T Consensus 3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai 53 (222)
T KOG3601|consen 3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAI 53 (222)
T ss_pred hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCccccc
Confidence 567899999999999999999998887653 36888788888999998887
No 27
>KOG2199|consensus
Probab=98.83 E-value=8.6e-10 Score=83.50 Aligned_cols=55 Identities=16% Similarity=0.243 Sum_probs=49.3
Q ss_pred CccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450 82 ERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE 138 (139)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~ 138 (139)
.+++++.|+|. +..++||+|.+||||++.++....||.++... ..|+||+|||..
T Consensus 215 ~rkVRALYDFe-AaE~nELsFkaGdIItVLd~s~~~WWKG~~~~-~~GlFPsnfVT~ 269 (462)
T KOG2199|consen 215 VRKVRALYDFE-AAEDNELSFKAGDIITVLDDSDPNWWKGENHR-GIGLFPSNFVTA 269 (462)
T ss_pred chhhhhhhccc-ccCCCccceecCcEEEEcccCCcchhccccCC-cccccchhhhhh
Confidence 35789999996 77888999999999999999999999888777 899999999975
No 28
>KOG2996|consensus
Probab=98.81 E-value=3.1e-09 Score=84.02 Aligned_cols=53 Identities=49% Similarity=0.877 Sum_probs=47.5
Q ss_pred EEEEeeecCCCCCCcccCCCCEEEEEECC--CCCeeEEEECCeEEEEcCCcEEec
Q psy6450 26 FVVLYNFKSRHADELDLKPGYKVTVIDTS--DQNWWKGKCMGRVGYFPSNYVIKV 78 (139)
Q Consensus 26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~ 78 (139)
++|-|||-+.+-.+|||+.||++.|+.+. +.|||+|..+|+.||||++||++-
T Consensus 808 AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~ 862 (865)
T KOG2996|consen 808 AVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEED 862 (865)
T ss_pred eeeccccCCCchhhcccccCCEEEEehhccccCceecceecCccccccccccccc
Confidence 67778888999999999999999998865 369999999999999999999864
No 29
>KOG0515|consensus
Probab=98.79 E-value=2.8e-09 Score=83.55 Aligned_cols=59 Identities=29% Similarity=0.623 Sum_probs=51.6
Q ss_pred cEEEEEeeecCCCCCCcccCCCCEEEEEECCC---CCeeEEEECCeEEEEcCCcEEecCCCC
Q psy6450 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSD---QNWWKGKCMGRVGYFPSNYVIKVQPGE 82 (139)
Q Consensus 24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~---~~w~~~~~~g~~G~~P~~~v~~~~~~~ 82 (139)
..+-|+|||+++..+||+|+.||.++|+.+++ ..||+++++|++|+||.+|+..+....
T Consensus 684 G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPriK 745 (752)
T KOG0515|consen 684 GVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPRIK 745 (752)
T ss_pred ceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCcccc
Confidence 34789999999999999999999999998754 479999999999999999997665443
No 30
>KOG2856|consensus
Probab=98.76 E-value=1.5e-09 Score=81.58 Aligned_cols=54 Identities=35% Similarity=0.759 Sum_probs=47.9
Q ss_pred EEEEEeeecCCCCCCcccCCCCEEEEEEC-CCCCeeEEEE-CCeEEEEcCCcEEec
Q psy6450 25 LFVVLYNFKSRHADELDLKPGYKVTVIDT-SDQNWWKGKC-MGRVGYFPSNYVIKV 78 (139)
Q Consensus 25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~-~~~~w~~~~~-~g~~G~~P~~~v~~~ 78 (139)
.++|||||.++..+||+|++||.+..+.. +..||-.|+. .|+.|++|++||+.+
T Consensus 416 ~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 416 RVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence 48999999999999999999999987765 4569999999 599999999999754
No 31
>KOG2070|consensus
Probab=98.76 E-value=3.7e-09 Score=82.09 Aligned_cols=54 Identities=20% Similarity=0.310 Sum_probs=45.8
Q ss_pred cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450 84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139 (139)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~ 139 (139)
.++|.+.|. +.+.+||+|.+||+|.+......|||.+.. +|++||||++||.++
T Consensus 19 vvrAkf~F~-gsNnDELsf~KgDvItVTq~eeGGWWEGTl-ng~TGWFPsnYV~ei 72 (661)
T KOG2070|consen 19 VVRAKFNFQ-GSNNDELSFSKGDVITVTQVEEGGWWEGTL-NGRTGWFPSNYVREI 72 (661)
T ss_pred EEEEEeecc-cCCCceeccccCCEEEEEEeccCcceeccc-cCccCccchHHHHHH
Confidence 567888886 888999999999999888888899995554 459999999999653
No 32
>KOG1264|consensus
Probab=98.75 E-value=3e-09 Score=86.78 Aligned_cols=57 Identities=32% Similarity=0.712 Sum_probs=52.6
Q ss_pred cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECC-eEEEEcCCcEEecCC
Q psy6450 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG-RVGYFPSNYVIKVQP 80 (139)
Q Consensus 24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g-~~G~~P~~~v~~~~~ 80 (139)
..++|||+|.++.++||+|-++-+|..+++..++||+|..+| ..+|||++||+++.+
T Consensus 775 vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~ 832 (1267)
T KOG1264|consen 775 VTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEIST 832 (1267)
T ss_pred hhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhcc
Confidence 458999999999999999999999999999999999999975 489999999998875
No 33
>KOG2546|consensus
Probab=98.73 E-value=5.4e-09 Score=79.79 Aligned_cols=54 Identities=31% Similarity=0.696 Sum_probs=51.5
Q ss_pred EEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecC
Q psy6450 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79 (139)
Q Consensus 26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~ 79 (139)
++++|||.+..++||+|.+|-+|.|+.+.+++||+|...|.+|+||.+|++.+.
T Consensus 426 Vv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~ 479 (483)
T KOG2546|consen 426 VVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK 479 (483)
T ss_pred HHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence 789999999999999999999999999999999999999999999999998764
No 34
>KOG1702|consensus
Probab=98.72 E-value=1.2e-08 Score=71.22 Aligned_cols=56 Identities=21% Similarity=0.551 Sum_probs=50.8
Q ss_pred CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEe
Q psy6450 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIK 77 (139)
Q Consensus 22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~ 77 (139)
+...++|+|||.++..++++|.-||.|.-.+..++||.+|+. +|.+|+.|++|++.
T Consensus 206 ~gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~ 263 (264)
T KOG1702|consen 206 TGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEF 263 (264)
T ss_pred CCccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheee
Confidence 345689999999999999999999999888888889999988 89999999999975
No 35
>KOG1118|consensus
Probab=98.64 E-value=1.1e-08 Score=75.28 Aligned_cols=55 Identities=9% Similarity=0.199 Sum_probs=48.7
Q ss_pred ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450 83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139 (139)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~ 139 (139)
+..++.++|. +++++||.|.+||+|.+...-+++||+++..+ ++|+||.|||+.+
T Consensus 307 p~cralYdFe-penEgEL~fkeGDlI~l~~QIdenWyeG~~~g-~sG~FPvnYv~vl 361 (366)
T KOG1118|consen 307 PCCRALYDFE-PENEGELDFKEGDLITLTNQIDENWYEGEKHG-ESGMFPVNYVEVL 361 (366)
T ss_pred hhheeeeccC-CCCCCccCcccCceeeehhhcCcchhhheecC-ccCccccceeEEe
Confidence 3567889996 99999999999999999999999999777666 8999999999974
No 36
>KOG1843|consensus
Probab=98.57 E-value=3.8e-08 Score=74.93 Aligned_cols=58 Identities=34% Similarity=0.750 Sum_probs=51.7
Q ss_pred CCCccEEEEEeeecCCCCCCcccCCCCEEEEEECCC--CCeeEEEECCeEEEEcCCcEEe
Q psy6450 20 LLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSD--QNWWKGKCMGRVGYFPSNYVIK 77 (139)
Q Consensus 20 ~~~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~--~~w~~~~~~g~~G~~P~~~v~~ 77 (139)
.+..+.+.|+|+|.++.+.+|+|++||+|.++.+.+ ..||.++.++.+|+||++|+..
T Consensus 413 Sl~~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 413 SLEPNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL 472 (473)
T ss_pred ccCcceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence 344667999999999999999999999999998765 4799999999999999999863
No 37
>KOG2546|consensus
Probab=98.55 E-value=1.4e-08 Score=77.55 Aligned_cols=65 Identities=18% Similarity=0.325 Sum_probs=54.0
Q ss_pred eEEEEcCCcEEecCCCCccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450 66 RVGYFPSNYVIKVQPGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139 (139)
Q Consensus 66 ~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~ 139 (139)
..+|+|.+|++ .+.+.++|+ +..++||+|.+|.+|.+.++.++|||.+ ..++.+|+||-|||+.+
T Consensus 414 sp~w~p~syLE-------kVv~iydy~-~~KddeLsf~E~ailyv~kknddgw~Eg-V~~~VTglFpgnyve~~ 478 (483)
T KOG2546|consen 414 SPAWVPTSYLE-------KVVAIYDYT-ADKDDELSFAEGAILYVLKKNDDGWYEG-VQDGVTGLFPGNYVEPL 478 (483)
T ss_pred CcccccHHHHH-------HHHhhcccc-cccccccccccccEEEEEEecCCcchhh-eecCcceeccCcccccc
Confidence 45899999885 466778996 8999999999999998888899999954 44558999999999864
No 38
>KOG4278|consensus
Probab=98.55 E-value=7.9e-08 Score=77.57 Aligned_cols=100 Identities=24% Similarity=0.488 Sum_probs=67.5
Q ss_pred CCccEEEEEeeecCCCCCCcccCCCCEEEEEECC-CCCeeEEEECCeEEEEcCCcEEecCCCCccceeccccccccCCCc
Q psy6450 21 LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQVTHNLQIADGESG 99 (139)
Q Consensus 21 ~~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 99 (139)
...+.++|||||.+.++..|++.+||.+.|+.-. ++.|-+.+....+||||++|+.++...+. ..+|| +.
T Consensus 88 ndpNLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGqGWVPSNyItPvNSLeK----hsWYH-Gp---- 158 (1157)
T KOG4278|consen 88 NDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQGWVPSNYITPVNSLEK----HSWYH-GP---- 158 (1157)
T ss_pred CCCceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCCccccccccccccchhh----ccccc-Cc----
Confidence 3456799999999999999999999999999755 45687777733349999999998775432 23554 11
Q ss_pred eeeecCcEEEEEcceeCCEEEEEeCCCeEEee
Q psy6450 100 LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVC 131 (139)
Q Consensus 100 l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~ 131 (139)
.+..+.+-+ ....++|.|+||++....|.+
T Consensus 159 vSRsaaEy~--LsSgInGSFLVRESEsSpgQ~ 188 (1157)
T KOG4278|consen 159 VSRSAAEYI--LSSGINGSFLVRESESSPGQY 188 (1157)
T ss_pred cccchhhhh--hhcCcccceEEeeccCCCcce
Confidence 111111111 223347777777776555543
No 39
>KOG3601|consensus
Probab=98.53 E-value=6.5e-08 Score=67.86 Aligned_cols=56 Identities=32% Similarity=0.734 Sum_probs=51.8
Q ss_pred ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEec
Q psy6450 23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78 (139)
Q Consensus 23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~ 78 (139)
..+..++|+|+++.+.++.|++|+.+.++...+..||.|+..|+.|+||++|+...
T Consensus 163 ~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~ 218 (222)
T KOG3601|consen 163 NYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPS 218 (222)
T ss_pred chhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCcccccc
Confidence 44589999999999999999999999999999999999999999999999998654
No 40
>KOG3875|consensus
Probab=98.45 E-value=2.4e-08 Score=73.65 Aligned_cols=58 Identities=29% Similarity=0.455 Sum_probs=49.0
Q ss_pred ccEEEEEeeecCCCCCCcccCCCCEEEEEECCC-----CCeeEEEE--CCeEEEEcCCcEEecCC
Q psy6450 23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSD-----QNWWKGKC--MGRVGYFPSNYVIKVQP 80 (139)
Q Consensus 23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~-----~~w~~~~~--~g~~G~~P~~~v~~~~~ 80 (139)
...++|+|||.+.++.||+|++||.+.|..+.+ +.||..+. .+..|+||.+||+.+..
T Consensus 268 ~~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 268 HEFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HHHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence 345899999999999999999999999876533 46888776 56789999999998775
No 41
>KOG3655|consensus
Probab=98.42 E-value=1.2e-07 Score=73.38 Aligned_cols=54 Identities=35% Similarity=0.786 Sum_probs=50.5
Q ss_pred EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEec
Q psy6450 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKV 78 (139)
Q Consensus 25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~ 78 (139)
.++|+|+|++-.+.|++|..++.|.++...+.+||.|.. +|..|+||+|||+.+
T Consensus 429 ~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 429 TARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred CccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence 489999999999999999999999999999999999998 899999999999754
No 42
>KOG1264|consensus
Probab=98.24 E-value=5.4e-07 Score=74.07 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=48.6
Q ss_pred ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450 83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139 (139)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~ 139 (139)
...+|.++|. +..++||+|.++.+|....+...|||.+..++..+++||++|||+|
T Consensus 775 vt~kAL~~Yk-a~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei 830 (1267)
T KOG1264|consen 775 VTVKALYDYK-AKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEI 830 (1267)
T ss_pred hhhhhhhccc-cCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhh
Confidence 3567888995 8889999999999998787777889988888878899999999975
No 43
>KOG3523|consensus
Probab=98.24 E-value=9.7e-08 Score=75.90 Aligned_cols=61 Identities=26% Similarity=0.519 Sum_probs=55.0
Q ss_pred CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCCCC
Q psy6450 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQPGE 82 (139)
Q Consensus 22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~~ 82 (139)
.+.++.++.+|.+..+++|++..+|++.|+++..+||++|.. +|..||||.+|++.|....
T Consensus 607 dcpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~~ 669 (695)
T KOG3523|consen 607 DCPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNPH 669 (695)
T ss_pred CCChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCHH
Confidence 345688999999999999999999999999999999999987 8899999999999887543
No 44
>KOG2856|consensus
Probab=98.16 E-value=3.6e-07 Score=68.99 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=46.5
Q ss_pred ccceeccccccccCCCceeeecCcEEEEE-cceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450 83 RPLQVTHNLQIADGESGLSLLRDQIVIQI-GDEVDGMVMIRNGENRQGVCPLKYLQEV 139 (139)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~-~~~~~g~~~~~~~~~~~G~~P~~~v~~~ 139 (139)
.++++.++|. ++..+||+|.+||.+... +....||..+|-..|+.|+||+||||-+
T Consensus 415 v~vraLYDY~-gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYA-GQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccC-cccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence 4678899995 777889999999988544 4445699999988889999999999853
No 45
>KOG3655|consensus
Probab=98.14 E-value=7.6e-07 Score=69.07 Aligned_cols=57 Identities=14% Similarity=0.238 Sum_probs=50.1
Q ss_pred CccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450 82 ERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139 (139)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~ 139 (139)
....++.++|. +..+.++++..+++|+.+...++|||.+.--+|..|+||+|||+.+
T Consensus 427 ~q~A~A~~dyq-AAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 427 PQTARALYDYQ-AADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred CCCcccccccc-ccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence 34577889997 5668899999999999999999999999989999999999999864
No 46
>KOG0162|consensus
Probab=98.11 E-value=1.6e-06 Score=70.60 Aligned_cols=55 Identities=15% Similarity=0.263 Sum_probs=47.1
Q ss_pred ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450 83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139 (139)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~ 139 (139)
+...+.++|. ++..+||++.+||+|.+..++..|||..+.. |+.||||.+||+.+
T Consensus 1052 p~~~A~Y~y~-gq~~dEls~~~~diIei~~edpSGWw~gk~~-~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1052 PVCEALYDYP-GQDVDELSFKKGDIIEIMREDPSGWWLGKLN-GKEGLFPGNYVTEY 1106 (1106)
T ss_pred cceeeeccCC-CCCcccccccCCCEEEEeccCCCcchhhccC-CccccccccccccC
Confidence 3567888994 8888999999999998888989999988854 49999999999863
No 47
>KOG0197|consensus
Probab=98.10 E-value=1.2e-06 Score=68.65 Aligned_cols=56 Identities=32% Similarity=0.879 Sum_probs=49.7
Q ss_pred ccEEEEEeeecCCCCCCcccCCCCE-EEEEECCCCCeeEEEE--CCeEEEEcCCcEEec
Q psy6450 23 TNLFVVLYNFKSRHADELDLKPGYK-VTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKV 78 (139)
Q Consensus 23 ~~~~~al~~~~~~~~~eLs~~~gd~-i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~ 78 (139)
...++|+|+|.+..+.+|+|.+||+ ..+++..+..||+.+. .+..|++|.||+...
T Consensus 11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN 69 (468)
T ss_pred cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence 3469999999999999999999999 7777777789999877 688999999999875
No 48
>KOG3875|consensus
Probab=97.90 E-value=2.7e-06 Score=62.99 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=41.1
Q ss_pred cceeccccccccCCCceeeecCcEEEEEc-----ceeCCEEEEEeC-CCeEEeeecCCEEeC
Q psy6450 84 PLQVTHNLQIADGESGLSLLRDQIVIQIG-----DEVDGMVMIRNG-ENRQGVCPLKYLQEV 139 (139)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~-----~~~~g~~~~~~~-~~~~G~~P~~~v~~~ 139 (139)
..++.++|. ++++.|++|.+||++.+.. ..+..||.++.- ++.+|+||.|||+.|
T Consensus 270 ~arA~YdF~-a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi 330 (362)
T KOG3875|consen 270 FARALYDFV-ARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKII 330 (362)
T ss_pred HHHHHhhhh-cCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhh
Confidence 467888994 7788999999999884432 222357777766 557799999999864
No 49
>KOG4792|consensus
Probab=97.90 E-value=2.7e-06 Score=60.60 Aligned_cols=53 Identities=17% Similarity=0.381 Sum_probs=45.6
Q ss_pred ceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450 85 LQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE 138 (139)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~ 138 (139)
.++.++|. +..+..|-|++||++.+.++..+-||..|++.|++|.+|..|||.
T Consensus 127 vr~~fdF~-G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~ 179 (293)
T KOG4792|consen 127 VRALFDFN-GNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEK 179 (293)
T ss_pred eeeeeccC-CCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHh
Confidence 44567774 666667999999999888888899999999999999999999984
No 50
>KOG3557|consensus
Probab=97.86 E-value=4.5e-06 Score=67.05 Aligned_cols=59 Identities=41% Similarity=0.811 Sum_probs=51.7
Q ss_pred CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCCC
Q psy6450 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQPG 81 (139)
Q Consensus 22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~ 81 (139)
...++.++|||.+.+..||+..+||++.|+.. ...||.+++ .|+.|++|.+.+..+...
T Consensus 499 ~~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~~ 558 (721)
T KOG3557|consen 499 GKKWVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQPE 558 (721)
T ss_pred cceeeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCCc
Confidence 34478999999999999999999999999885 358999999 789999999999877644
No 51
>KOG0515|consensus
Probab=97.82 E-value=5.2e-06 Score=65.65 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=40.7
Q ss_pred cceeccccccccCCCceeeecCcEEEEEcc---eeCCEEEEEeCCCeEEeeecCCEE
Q psy6450 84 PLQVTHNLQIADGESGLSLLRDQIVIQIGD---EVDGMVMIRNGENRQGVCPLKYLQ 137 (139)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~---~~~g~~~~~~~~~~~G~~P~~~v~ 137 (139)
.+.+.++|. ++.++||+|.+||-+.+.++ ....||+++..+ +.|+||.||+-
T Consensus 685 ~vYAlwdYe-aqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng-~eGyVPRnylg 739 (752)
T KOG0515|consen 685 VVYALWDYE-AQFEDELSFDEGDELTVIRRDDEVETEWWWARLNG-EEGYVPRNYLG 739 (752)
T ss_pred eeEEeeccc-ccccccccccCCceeEEEecCCcchhhhhhHhhcC-cccccchhhhh
Confidence 455777885 99999999999997755443 334899999555 99999999973
No 52
>KOG4429|consensus
Probab=97.78 E-value=1.1e-05 Score=59.56 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=49.4
Q ss_pred cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEe
Q psy6450 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77 (139)
Q Consensus 24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~ 77 (139)
..|.++|+|++..+++|...+|+++.+.+....+||.|+..|.-|-||+.+++.
T Consensus 364 ~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEe 417 (421)
T KOG4429|consen 364 ILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEE 417 (421)
T ss_pred HHhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHH
Confidence 348999999999999999999999988888889999999999989999988865
No 53
>KOG2222|consensus
Probab=97.76 E-value=3.5e-06 Score=66.05 Aligned_cols=56 Identities=27% Similarity=0.529 Sum_probs=51.3
Q ss_pred EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80 (139)
Q Consensus 25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~ 80 (139)
.++|+.||....++||.|++.|+|++++..+..-|-|..+|-+||||+.+|+.+..
T Consensus 550 rakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvellde 605 (848)
T KOG2222|consen 550 RAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLDE 605 (848)
T ss_pred HHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHHh
Confidence 37889999999999999999999999998888999999999999999999976653
No 54
>KOG1702|consensus
Probab=97.69 E-value=6.3e-05 Score=52.89 Aligned_cols=56 Identities=16% Similarity=0.281 Sum_probs=44.5
Q ss_pred ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEE-eCCCeEEeeecCCEEeC
Q psy6450 83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIR-NGENRQGVCPLKYLQEV 139 (139)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~-~~~~~~G~~P~~~v~~~ 139 (139)
...++.++| .++.+++.+|.-||-|+....-++||.... .-.|.+|.+|+||||-|
T Consensus 208 ktyra~ydy-saqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 208 KTYRAFYDY-SAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred ccchhhccC-cccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence 568899999 488889999999998876777778985433 33457999999999965
No 55
>KOG2528|consensus
Probab=97.64 E-value=1.6e-05 Score=61.49 Aligned_cols=55 Identities=25% Similarity=0.512 Sum_probs=49.9
Q ss_pred EEEEEeeecCCCCCCcccCCCCEEEEEECC-CCCeeEEEE-CCeEEEEcCCcEEecC
Q psy6450 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKC-MGRVGYFPSNYVIKVQ 79 (139)
Q Consensus 25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~-~~~w~~~~~-~g~~G~~P~~~v~~~~ 79 (139)
..+++|+|.++...+++...||++.+.... ..+||.+.+ .|..|.||++|++.+.
T Consensus 4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~ 60 (490)
T KOG2528|consen 4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTR 60 (490)
T ss_pred chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeec
Confidence 478999999999999999999999998765 568999999 8999999999999876
No 56
>KOG3775|consensus
Probab=97.62 E-value=3.1e-05 Score=58.91 Aligned_cols=56 Identities=34% Similarity=0.598 Sum_probs=50.9
Q ss_pred EEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCCC
Q psy6450 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQPG 81 (139)
Q Consensus 26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~ 81 (139)
-++++.|.+..++||.|..||-|.|....++.|.+|.+ +|++|+||+.|..++...
T Consensus 265 HR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~ 322 (482)
T KOG3775|consen 265 HRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGP 322 (482)
T ss_pred hhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCc
Confidence 57889999999999999999999999888889999998 899999999999887643
No 57
>KOG4773|consensus
Probab=97.62 E-value=5.7e-06 Score=62.11 Aligned_cols=54 Identities=24% Similarity=0.527 Sum_probs=51.1
Q ss_pred EEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecC
Q psy6450 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79 (139)
Q Consensus 26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~ 79 (139)
+.++++|.+....||.|.+||++.++.+++.+||.|+.++.+||+|.+|+..+.
T Consensus 178 ~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld 231 (386)
T KOG4773|consen 178 AEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLD 231 (386)
T ss_pred HHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhc
Confidence 678999999999999999999999999999999999999999999999998774
No 58
>KOG1451|consensus
Probab=97.62 E-value=8.7e-05 Score=59.51 Aligned_cols=68 Identities=26% Similarity=0.451 Sum_probs=53.0
Q ss_pred CCCCCccccCCCCccEEEEEeeecCCCCCCcccCCCCEEEEEE-CCCCCeeEEEECCeEEEEcCCcEEe
Q psy6450 10 LHDLTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKCMGRVGYFPSNYVIK 77 (139)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~-~~~~~w~~~~~~g~~G~~P~~~v~~ 77 (139)
.++++....-......+.++|...+..+.+++|..|.++.-.. ...+||..|+.+|.+|++|.+||+.
T Consensus 743 ~ps~~~~~~~~~~~rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~ 811 (812)
T KOG1451|consen 743 LPSSSMGTTYKYLSRRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEP 811 (812)
T ss_pred CCcccccCCCccccccccceeccCCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCc
Confidence 3334443333333344888999999999999999999987544 5678999999999999999999975
No 59
>KOG3523|consensus
Probab=97.47 E-value=1.1e-05 Score=64.56 Aligned_cols=56 Identities=21% Similarity=0.325 Sum_probs=47.5
Q ss_pred ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEE-eCCCeEEeeecCCEEeC
Q psy6450 83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIR-NGENRQGVCPLKYLQEV 139 (139)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~-~~~~~~G~~P~~~v~~~ 139 (139)
+.+.+++.|. +...+++.+..+|++.+.....+||+.+. -.||..||||..|+++|
T Consensus 609 pQv~~~~sy~-a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI 665 (695)
T KOG3523|consen 609 PQVQCVHSYK-AKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEI 665 (695)
T ss_pred Chhheeeccc-cCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHh
Confidence 3577888885 77788999999999988888899998755 56899999999999865
No 60
>KOG0609|consensus
Probab=97.29 E-value=7e-05 Score=59.30 Aligned_cols=53 Identities=23% Similarity=0.625 Sum_probs=44.1
Q ss_pred cEEEEEeeecCCCCC-------CcccCCCCEEEEEECCCCCeeEEEEC-----CeEEEEcCCcEE
Q psy6450 24 NLFVVLYNFKSRHAD-------ELDLKPGYKVTVIDTSDQNWWKGKCM-----GRVGYFPSNYVI 76 (139)
Q Consensus 24 ~~~~al~~~~~~~~~-------eLs~~~gd~i~v~~~~~~~w~~~~~~-----g~~G~~P~~~v~ 76 (139)
.+++|+|||.+..++ .|.|++||++.|+++++..||.++.. +..|.+|+....
T Consensus 215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~q 279 (542)
T KOG0609|consen 215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQ 279 (542)
T ss_pred eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHH
Confidence 468999999987654 49999999999999999999999873 346899986654
No 61
>KOG4575|consensus
Probab=97.24 E-value=0.00051 Score=55.64 Aligned_cols=56 Identities=23% Similarity=0.468 Sum_probs=45.5
Q ss_pred cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecC
Q psy6450 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQ 79 (139)
Q Consensus 24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~ 79 (139)
-+++|+|.+.++..++|.|..||++.++...++-||-+.. ....|+||.+++..+.
T Consensus 9 ~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcLd 66 (874)
T KOG4575|consen 9 CMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCLD 66 (874)
T ss_pred ceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeecc
Confidence 3589999999999999999999999999876554554444 4567999999996554
No 62
>KOG2528|consensus
Probab=97.19 E-value=0.00014 Score=56.38 Aligned_cols=55 Identities=22% Similarity=0.441 Sum_probs=47.3
Q ss_pred cceeccccccccCCCceeeecCcEE-EEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450 84 PLQVTHNLQIADGESGLSLLRDQIV-IQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139 (139)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~g~~v-~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~ 139 (139)
..++.++|+ .+...+++.-.+|++ +...+..+||+...+..|.+|+||+.|||.+
T Consensus 4 k~RamyDf~-~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~ 59 (490)
T KOG2528|consen 4 KARAMYDFQ-SEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVT 59 (490)
T ss_pred chhhhcchh-hcccccccccccceeeecCcccccccccCCCccCccCCCcccceeee
Confidence 467888997 448888999999987 5578888999999999999999999999964
No 63
>KOG3771|consensus
Probab=97.15 E-value=0.00041 Score=54.25 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=42.9
Q ss_pred EEEEEeeecCCCCCCcccCCCCEEEEEECC-CCCeeEEEECCeEEEEcCCcEE
Q psy6450 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYVI 76 (139)
Q Consensus 25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~ 76 (139)
.+.++|+|.++..++|+|+.||+|.|+... .+.||.|...|..+-++.+|+.
T Consensus 402 ~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~ 454 (460)
T KOG3771|consen 402 KVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFP 454 (460)
T ss_pred ceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhccccccccee
Confidence 489999999999999999999999998754 4579999887766666666653
No 64
>KOG3557|consensus
Probab=96.90 E-value=0.00016 Score=58.35 Aligned_cols=53 Identities=25% Similarity=0.322 Sum_probs=43.4
Q ss_pred cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450 84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE 138 (139)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~ 138 (139)
...+.|+|. +++..||++.+||++.+..+ ..+||.|++..|+.|++|.|.+..
T Consensus 502 ~~~~~Ydf~-arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~ 554 (721)
T KOG3557|consen 502 WVLVLYDFQ-ARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAP 554 (721)
T ss_pred eeeeehhhh-cccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhcc
Confidence 455677884 88999999999999854433 378999999999999999998764
No 65
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=96.76 E-value=0.0043 Score=34.37 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=29.1
Q ss_pred eeeecCcEEEEEcceeCC-EEEEEeCCCeEEeeecCCEE
Q psy6450 100 LSLLRDQIVIQIGDEVDG-MVMIRNGENRQGVCPLKYLQ 137 (139)
Q Consensus 100 l~~~~g~~v~~~~~~~~g-~~~~~~~~~~~G~~P~~~v~ 137 (139)
-.+..|+.|.+.....++ |+.++..+++.||+..+||+
T Consensus 17 ~~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 17 GQLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred EEEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 556788887655554444 99998888899999999985
No 66
>KOG2222|consensus
Probab=96.72 E-value=0.00012 Score=57.64 Aligned_cols=55 Identities=13% Similarity=0.311 Sum_probs=45.1
Q ss_pred CccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450 82 ERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE 138 (139)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~ 138 (139)
..++++..+|. ...++++.|.+.|+|......++..| +++.+|-.||||+.|||.
T Consensus 548 ~krakal~df~-r~dddelgfrkndiitiisekdehcw-vgelnglrgwfpakfvel 602 (848)
T KOG2222|consen 548 AKRAKALHDFA-REDDDELGFRKNDIITIISEKDEHCW-VGELNGLRGWFPAKFVEL 602 (848)
T ss_pred hHHHHHHhhhh-hccccccccccccEEEEeecCCccee-eeccccccccchHHHHHH
Confidence 44677888884 67788999999999977777777778 777777999999999874
No 67
>KOG3725|consensus
Probab=96.72 E-value=0.00039 Score=50.72 Aligned_cols=55 Identities=25% Similarity=0.424 Sum_probs=48.1
Q ss_pred cEEEEEeeecCCCCCCcccCCCCEEEEEEC--CCCCeeEEEECCeEEEEcCCcEEec
Q psy6450 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDT--SDQNWWKGKCMGRVGYFPSNYVIKV 78 (139)
Q Consensus 24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~--~~~~w~~~~~~g~~G~~P~~~v~~~ 78 (139)
..++++|||.+..+.||++-..++|.|.+- .+.+|..+..+++.|-+|..|++.+
T Consensus 318 rkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 318 RKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL 374 (375)
T ss_pred cceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence 458999999999999999999999998874 3668999999999999999998643
No 68
>KOG3632|consensus
Probab=96.70 E-value=0.0012 Score=55.88 Aligned_cols=55 Identities=20% Similarity=0.325 Sum_probs=39.1
Q ss_pred cceeccccc-------cccCCCceeeecCcEEEEEcceeC-CEEEEEeCCCeEEeeecCCEEeC
Q psy6450 84 PLQVTHNLQ-------IADGESGLSLLRDQIVIQIGDEVD-GMVMIRNGENRQGVCPLKYLQEV 139 (139)
Q Consensus 84 ~~~~~~~~~-------~~~~~~~l~~~~g~~v~~~~~~~~-g~~~~~~~~~~~G~~P~~~v~~~ 139 (139)
.+.+.+||. ....+.||.|.+|+||++.++.+. |+| -.+.+|++|++|+|+|.++
T Consensus 1140 ifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY-~GE~ngr~GlIPcNmvae~ 1202 (1335)
T KOG3632|consen 1140 IFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFY-MGELNGRRGLIPCNMVAEQ 1202 (1335)
T ss_pred eeEeeeccCccccCCCCChhhhccccccCcEEEEecccccccee-ecccccccccccccccccc
Confidence 345666774 223355799999999988765554 666 4555669999999999764
No 69
>KOG3725|consensus
Probab=96.48 E-value=0.00034 Score=51.02 Aligned_cols=56 Identities=27% Similarity=0.392 Sum_probs=45.1
Q ss_pred CccceeccccccccCCCceeeecCcEEEE--EcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450 82 ERPLQVTHNLQIADGESGLSLLRDQIVIQ--IGDEVDGMVMIRNGENRQGVCPLKYLQEV 139 (139)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~g~~v~~--~~~~~~g~~~~~~~~~~~G~~P~~~v~~~ 139 (139)
....++.++|. +....|+++..++++++ ....+..|.+.+.++ +.|-+|.+|+|.+
T Consensus 317 trkArVlyDYd-Aa~s~ElslladeiitVyslpGMD~dwlmgErGn-kkGKvPvtYlELL 374 (375)
T KOG3725|consen 317 TRKARVLYDYD-AALSQELSLLADEIITVYSLPGMDADWLMGERGN-KKGKVPVTYLELL 374 (375)
T ss_pred ccceeeeeccc-ccchhhhhhhhcceEEEEecCCCChHHhhhhhcC-CCCCcchhHHHhc
Confidence 45788899996 66777899999999865 356667888777777 9999999999854
No 70
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=96.36 E-value=0.0056 Score=37.37 Aligned_cols=44 Identities=25% Similarity=0.410 Sum_probs=30.7
Q ss_pred CCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecC
Q psy6450 36 HADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQ 79 (139)
Q Consensus 36 ~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~ 79 (139)
+.-+|.+++|+.+.|++..+..-|.|++ .|+-|+|+.+++-...
T Consensus 29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~d 73 (89)
T PF14603_consen 29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPLD 73 (89)
T ss_dssp -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS----
T ss_pred CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCCC
Confidence 4678999999999999998889999999 8999999999985543
No 71
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=96.36 E-value=0.0043 Score=37.88 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=28.4
Q ss_pred CceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCE
Q psy6450 98 SGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYL 136 (139)
Q Consensus 98 ~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v 136 (139)
..|.+.+||++-+.....++-|+||+++|+-|+||.++|
T Consensus 31 kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L 69 (89)
T PF14603_consen 31 KDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHL 69 (89)
T ss_dssp TB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS
T ss_pred ccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHc
Confidence 459999999986666667888999999999999999987
No 72
>KOG4773|consensus
Probab=96.29 E-value=0.00072 Score=51.10 Aligned_cols=53 Identities=8% Similarity=0.225 Sum_probs=42.6
Q ss_pred ceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450 85 LQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139 (139)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~ 139 (139)
.++..+|. +....||.+.+|+++.+..+...+||++..-+ .+||+|..|++.+
T Consensus 178 ~~a~~df~-gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~-~~g~yp~sF~~~l 230 (386)
T KOG4773|consen 178 AEASFDFP-GNSKLELNLVAGDVEFLLSRDEKYWLLGKVRG-LTGYYPDSFVKQL 230 (386)
T ss_pred HHhhccCC-CCccceeeeehhhHHHHHhhcccceeeeeecc-ccccccHHhhhhh
Confidence 44556663 66778899999999988888889999876665 8999999998753
No 73
>KOG3565|consensus
Probab=96.10 E-value=0.0019 Score=53.16 Aligned_cols=61 Identities=25% Similarity=0.549 Sum_probs=51.6
Q ss_pred CCCCccEEEEEeeecCCCCCCcccCCCCEEEEEECC-CCCeeEEE--ECCeEEEEcCCcEEecC
Q psy6450 19 RLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGK--CMGRVGYFPSNYVIKVQ 79 (139)
Q Consensus 19 ~~~~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~-~~~w~~~~--~~g~~G~~P~~~v~~~~ 79 (139)
...+...+.|+|.|.++.++++++..|+++.+++.+ .++|-+++ ..+..|.+|.+|+....
T Consensus 574 ~~p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~ 637 (640)
T KOG3565|consen 574 PSPPIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE 637 (640)
T ss_pred CCCCccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence 344556799999999999999999999999988765 56899998 47889999999997654
No 74
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=96.08 E-value=0.015 Score=32.93 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=29.4
Q ss_pred eeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEE
Q psy6450 100 LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQ 137 (139)
Q Consensus 100 l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~ 137 (139)
..+..|+.+.+.....++|+.++..+|+.||++..++.
T Consensus 25 ~~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~~ 62 (63)
T smart00287 25 GTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVVN 62 (63)
T ss_pred EEecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeeec
Confidence 45678888765555444999999998899999888764
No 75
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=95.82 E-value=0.024 Score=31.25 Aligned_cols=36 Identities=36% Similarity=0.697 Sum_probs=28.7
Q ss_pred ccCCCCEEEEEECCCCC-eeEEEE-CCeEEEEcCCcEE
Q psy6450 41 DLKPGYKVTVIDTSDQN-WWKGKC-MGRVGYFPSNYVI 76 (139)
Q Consensus 41 s~~~gd~i~v~~~~~~~-w~~~~~-~g~~G~~P~~~v~ 76 (139)
.+..|+.+.++.....+ |++.+. ++..||+...|+.
T Consensus 18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 46789999998876544 999944 8999999999874
No 76
>KOG4429|consensus
Probab=95.75 E-value=0.0027 Score=47.21 Aligned_cols=51 Identities=16% Similarity=0.012 Sum_probs=43.6
Q ss_pred eccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450 87 VTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139 (139)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~ 139 (139)
+.+.|+ ++.+++|....|++++......+|||.|+-.+ ..|-||+.|||++
T Consensus 368 afYSfq-arqddel~~e~gditif~Ekkeeg~~f~rl~g-d~~hf~Aa~iEea 418 (421)
T KOG4429|consen 368 AFYSFQ-ARQDDELGGEIGDITIFDEKKEEGPTFCRLLG-DFEHFHAAEIEEA 418 (421)
T ss_pred hhhccc-cccccccCCcccceeeecCcccCCCceeeecc-ccCCCcHHHHHHh
Confidence 456664 77888999999999999999899999888776 8999999998863
No 77
>KOG1843|consensus
Probab=95.70 E-value=0.0048 Score=47.72 Aligned_cols=53 Identities=15% Similarity=0.279 Sum_probs=38.3
Q ss_pred cceeccccccccCCCceeeecCcEEEEEc--ceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450 84 PLQVTHNLQIADGESGLSLLRDQIVIQIG--DEVDGMVMIRNGENRQGVCPLKYLQE 138 (139)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~--~~~~g~~~~~~~~~~~G~~P~~~v~~ 138 (139)
.+.+.+.|. .+....++|.+||+|.... +..+.||.. ..+++.|+||+|||+.
T Consensus 418 ~a~a~ysfa-ge~~GDl~f~kgDii~il~ks~s~~dwwtg-r~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 418 IATALYSFA-GEQPGDLSFQKGDIITILKKSDSANDWWTG-RGNGYEGIFPANYVSL 472 (473)
T ss_pred eeeeeehhc-cCCCCCcccccCceEEEecCCcchhhHHHh-hccccccccccceecc
Confidence 455666663 6666679999999985543 445678844 4555999999999974
No 78
>KOG0199|consensus
Probab=95.60 E-value=0.018 Score=48.03 Aligned_cols=51 Identities=29% Similarity=0.423 Sum_probs=43.1
Q ss_pred EEEEeeecCCCCCCcccCCCCEEEEEECCC-CCeeEEEE--CCeEEEEcCCcEE
Q psy6450 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGKC--MGRVGYFPSNYVI 76 (139)
Q Consensus 26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~-~~w~~~~~--~g~~G~~P~~~v~ 76 (139)
++|..+|....++.|-|++||.|.|++... +.||+|.+ +++.|-||.+-+.
T Consensus 377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 377 AVARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred ceeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence 456667777889999999999999998753 57999987 6789999998887
No 79
>KOG3775|consensus
Probab=95.56 E-value=0.01 Score=45.60 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=43.2
Q ss_pred ceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC-CCeEEeeecCCEEeC
Q psy6450 85 LQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG-ENRQGVCPLKYLQEV 139 (139)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~-~~~~G~~P~~~v~~~ 139 (139)
-++...|. .+..+||.+..||.|.+....++-|+..-+. .|+.|+||+.|+-+|
T Consensus 265 HR~~~rFv-PRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~ev 319 (482)
T KOG3775|consen 265 HRAVFRFV-PRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEV 319 (482)
T ss_pred hhhhhhcc-CCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEec
Confidence 35666774 7888899999999999888888889765544 468899999998654
No 80
>KOG4278|consensus
Probab=95.26 E-value=0.016 Score=47.82 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=40.3
Q ss_pred cceeccccccccCCCceeeecCcEEEEEcceeC-CEEEEEeCCCeEEeeecCCEEe
Q psy6450 84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVD-GMVMIRNGENRQGVCPLKYLQE 138 (139)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~-g~~~~~~~~~~~G~~P~~~v~~ 138 (139)
.+.+.|+|. +..++-|++.+||-+-+.+-..+ .|..++.-+|+ ||||+||+.-
T Consensus 92 LFVALYDFv-asGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItP 145 (1157)
T KOG4278|consen 92 LFVALYDFV-ASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITP 145 (1157)
T ss_pred eeEeeeeee-ccccceeeeecCceEEEeeecCCCcceeecccCCC-cccccccccc
Confidence 577889995 88888899999998865554444 55566665544 9999999863
No 81
>KOG4575|consensus
Probab=94.71 E-value=0.031 Score=45.71 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=36.4
Q ss_pred cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC--CCeEEeeecCCEE
Q psy6450 84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG--ENRQGVCPLKYLQ 137 (139)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~--~~~~G~~P~~~v~ 137 (139)
.++|.+.. .++.++.+.|.+||++.+.+- .+|||++... ....|+||.|||-
T Consensus 10 ~vrA~y~w-~ge~eGdl~f~egDlie~trI-~dgkwwi~lhrNk~~~g~fpsNFvh 63 (874)
T KOG4575|consen 10 MVRALYAW-PGEREGDLKFTEGDLIEQTRI-EDGKWWILLHRNKDEDGLFPSNFVH 63 (874)
T ss_pred eEEeeccC-CCCcccccceecccceeEEee-ccceeeeeeeecccccccCccccee
Confidence 34556666 477888899999999865544 3566665522 2366999999983
No 82
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.48 E-value=0.049 Score=38.84 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=30.7
Q ss_pred eeeecCcEEEEEccee-CCEEEEEeCCCeEEeeecCCEEe
Q psy6450 100 LSLLRDQIVIQIGDEV-DGMVMIRNGENRQGVCPLKYLQE 138 (139)
Q Consensus 100 l~~~~g~~v~~~~~~~-~g~~~~~~~~~~~G~~P~~~v~~ 138 (139)
-.+..|+.|.+..... .||..|+..+|+.||++..||..
T Consensus 48 ~~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~ 87 (206)
T PRK10884 48 GTLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLST 87 (206)
T ss_pred EEEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcC
Confidence 4567888886555433 58999999999999999999863
No 83
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=94.40 E-value=0.12 Score=29.12 Aligned_cols=36 Identities=39% Similarity=0.570 Sum_probs=28.8
Q ss_pred cccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcE
Q psy6450 40 LDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYV 75 (139)
Q Consensus 40 Ls~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v 75 (139)
-.+..|+.+.++.....+|.+.+. .|..||++..++
T Consensus 25 ~~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~ 61 (63)
T smart00287 25 GTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV 61 (63)
T ss_pred EEecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence 347789999999876548999988 599999976654
No 84
>KOG1451|consensus
Probab=94.10 E-value=0.046 Score=44.49 Aligned_cols=45 Identities=24% Similarity=0.412 Sum_probs=33.1
Q ss_pred ccCCCceeeecCcEEEEEc-ceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450 94 ADGESGLSLLRDQIVIQIG-DEVDGMVMIRNGENRQGVCPLKYLQEV 139 (139)
Q Consensus 94 ~~~~~~l~~~~g~~v~~~~-~~~~g~~~~~~~~~~~G~~P~~~v~~~ 139 (139)
+....++++..|.+..-.- ...+||. ++..+|++|++|.||||-+
T Consensus 767 a~h~selsf~~gt~f~nv~~S~e~Gwl-~GtLnGktglip~nyve~l 812 (812)
T KOG1451|consen 767 ADHHSELSFEPGTIFTNVYESNEDGWL-VGTLNGKTGLIPSNYVEPL 812 (812)
T ss_pred CCCcccccccCcceeeeecccCCCCce-eeecCCCcccCcccccCcC
Confidence 4455579999999885443 3345766 6667779999999999853
No 85
>KOG3812|consensus
Probab=93.96 E-value=0.024 Score=43.21 Aligned_cols=47 Identities=13% Similarity=0.473 Sum_probs=37.7
Q ss_pred EEEEeeecCCCCCC-------cccCCCCEEEEEECCCCCeeEEEE---CCeEEEEcC
Q psy6450 26 FVVLYNFKSRHADE-------LDLKPGYKVTVIDTSDQNWWKGKC---MGRVGYFPS 72 (139)
Q Consensus 26 ~~al~~~~~~~~~e-------Ls~~~gd~i~v~~~~~~~w~~~~~---~g~~G~~P~ 72 (139)
+++.-+|.+.-+++ ++|...|.+.|.++-+++||.|+. .+..||+|.
T Consensus 61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred EEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 44556787765544 889999999999999999999997 456799986
No 86
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.84 E-value=0.09 Score=37.53 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=33.5
Q ss_pred cccCCCCEEEEEECCC-CCeeEEEE-CCeEEEEcCCcEEecC
Q psy6450 40 LDLKPGYKVTVIDTSD-QNWWKGKC-MGRVGYFPSNYVIKVQ 79 (139)
Q Consensus 40 Ls~~~gd~i~v~~~~~-~~w~~~~~-~g~~G~~P~~~v~~~~ 79 (139)
-++.+|+.+.+++..+ .+|.+.+. +|++||++..|+....
T Consensus 48 ~~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~p 89 (206)
T PRK10884 48 GTLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTTP 89 (206)
T ss_pred EEEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCCc
Confidence 4678999999998664 68999987 8899999999987654
No 87
>KOG3771|consensus
Probab=93.79 E-value=0.031 Score=44.05 Aligned_cols=51 Identities=20% Similarity=0.426 Sum_probs=36.7
Q ss_pred cceeccccccccCCCceeeecCcEEEEE-----cceeCCEEEEEeCCCeEEeeecCC
Q psy6450 84 PLQVTHNLQIADGESGLSLLRDQIVIQI-----GDEVDGMVMIRNGENRQGVCPLKY 135 (139)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~-----~~~~~g~~~~~~~~~~~G~~P~~~ 135 (139)
.+.+.++|. +...++|++..|++|.+. .++++||.|+...+...|+||+++
T Consensus 402 ~v~a~~dy~-a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~~~~ 457 (460)
T KOG3771|consen 402 KVKALHDYA-AQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFPLNF 457 (460)
T ss_pred ceecccccc-ccccccccccCCCEEEEecCCCccchhhHHHhhhcccccccceeccc
Confidence 567888995 777778999999988443 344557776665554567888775
No 88
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=93.71 E-value=0.19 Score=27.72 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=26.5
Q ss_pred eeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCE
Q psy6450 100 LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYL 136 (139)
Q Consensus 100 l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v 136 (139)
..+.+|..+.+. ...++|..++ .+|.+||++.+.|
T Consensus 19 ~~l~~g~~v~v~-~~~~~W~~V~-~~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVI-ECRGGWCKVR-ADGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEE-EccCCeEEEE-ECCeEEeEEeeec
Confidence 556666666544 5568999999 8889999998765
No 89
>KOG0197|consensus
Probab=93.41 E-value=0.017 Score=45.83 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=42.4
Q ss_pred cceeccccccccCCCceeeecCcE-EEEEcceeCCEEEEEeC-CCeEEeeecCCEEe
Q psy6450 84 PLQVTHNLQIADGESGLSLLRDQI-VIQIGDEVDGMVMIRNG-ENRQGVCPLKYLQE 138 (139)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~g~~-v~~~~~~~~g~~~~~~~-~~~~G~~P~~~v~~ 138 (139)
...+.++|. +....+|++..|+. ..+..+....||+++.. .+..|++|.|||.+
T Consensus 13 ~~valyd~~-s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~ 68 (468)
T KOG0197|consen 13 IVVALYDYA-SRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVAR 68 (468)
T ss_pred eEEEecccc-CCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeec
Confidence 455667775 55677899999999 56677777899988866 56889999999974
No 90
>KOG3705|consensus
Probab=92.65 E-value=0.15 Score=39.94 Aligned_cols=53 Identities=32% Similarity=0.368 Sum_probs=44.4
Q ss_pred EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEe
Q psy6450 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIK 77 (139)
Q Consensus 25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~ 77 (139)
..++++++.++..+|+.++.||.+.|-...-+|.-.|.+ .++.|.||+--+++
T Consensus 511 n~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred ceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence 378999999999999999999999888766566667776 67899999877764
No 91
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=92.57 E-value=0.35 Score=26.63 Aligned_cols=35 Identities=31% Similarity=0.621 Sum_probs=28.6
Q ss_pred cccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcE
Q psy6450 40 LDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75 (139)
Q Consensus 40 Ls~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v 75 (139)
..+.+|..+.+.+. ..+|.+.+.+|..||++.+.+
T Consensus 19 ~~l~~g~~v~v~~~-~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVIEC-RGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEEEc-cCCeEEEEECCeEEeEEeeec
Confidence 45778888888865 578999998999999987765
No 92
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=92.05 E-value=0.28 Score=35.01 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=31.0
Q ss_pred eeeecCcEEEEEcc-eeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450 100 LSLLRDQIVIQIGD-EVDGMVMIRNGENRQGVCPLKYLQE 138 (139)
Q Consensus 100 l~~~~g~~v~~~~~-~~~g~~~~~~~~~~~G~~P~~~v~~ 138 (139)
-++..||.+.+... ...||..++..+|+.|+|+..++..
T Consensus 48 ~~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~ 87 (205)
T COG3103 48 GSIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTS 87 (205)
T ss_pred eEecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhcc
Confidence 56788898855544 3448999999999999999998764
No 93
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=91.11 E-value=0.37 Score=38.62 Aligned_cols=39 Identities=23% Similarity=0.265 Sum_probs=32.0
Q ss_pred eeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450 100 LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE 138 (139)
Q Consensus 100 l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~ 138 (139)
-.+..|+.|.+.....+||+.++..+|+.||+-..||..
T Consensus 103 gsl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~ 141 (481)
T PRK13914 103 TSIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTD 141 (481)
T ss_pred eeecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccC
Confidence 567788888665445689999999999999999999864
No 94
>KOG0609|consensus
Probab=90.60 E-value=0.06 Score=43.20 Aligned_cols=54 Identities=22% Similarity=0.264 Sum_probs=38.6
Q ss_pred cceeccccc------cccCCCceeeecCcEEEEEcceeCCEEEEEeCC----CeEEeeecCCEE
Q psy6450 84 PLQVTHNLQ------IADGESGLSLLRDQIVIQIGDEVDGMVMIRNGE----NRQGVCPLKYLQ 137 (139)
Q Consensus 84 ~~~~~~~~~------~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~----~~~G~~P~~~v~ 137 (139)
..++.++|. ....+.++.|.+|||+-+....+..||-.+..+ +..|++|+..++
T Consensus 216 ~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~q 279 (542)
T KOG0609|consen 216 FVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQ 279 (542)
T ss_pred eehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHH
Confidence 345666665 233456699999999987888888998665432 567999997554
No 95
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=90.43 E-value=0.56 Score=33.46 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=55.0
Q ss_pred cccCCCCEEEEEECCCC-CeeEEEE-CCeEEEEcCCcEEecCCCCccceeccccccccCCC-----ceeeecCcEEEEEc
Q psy6450 40 LDLKPGYKVTVIDTSDQ-NWWKGKC-MGRVGYFPSNYVIKVQPGERPLQVTHNLQIADGES-----GLSLLRDQIVIQIG 112 (139)
Q Consensus 40 Ls~~~gd~i~v~~~~~~-~w~~~~~-~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~g~~v~~~~ 112 (139)
=++++|+.+.|+..... +|.+.+. .|..|||+..++........+... -......... --.+..|..+.+..
T Consensus 48 ~~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e~s~~~~~p~-~~~nVr~~t~t~~~v~g~~~~~t~~~~~s 126 (205)
T COG3103 48 GSIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSEPSSNERVPD-LELNVRELTKTLSNVDGTWKQGTAVMQIS 126 (205)
T ss_pred eEecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhccccccceecCc-hhhhhhhcccchhhhhhhhhcCcEEEEEe
Confidence 46889999999987644 7999888 789999999888654432110000 0000011000 02334444555555
Q ss_pred ceeCCEEEEEeCCCeEEeeecCCEE
Q psy6450 113 DEVDGMVMIRNGENRQGVCPLKYLQ 137 (139)
Q Consensus 113 ~~~~g~~~~~~~~~~~G~~P~~~v~ 137 (139)
...++|+... ..++.|++-..|+.
T Consensus 127 k~~~~w~~~~-~~~k~~~vs~q~~~ 150 (205)
T COG3103 127 KTQNNWYIIT-LKGKNGYVSGQLVT 150 (205)
T ss_pred eccccchhhh-hhcccchhhhhhee
Confidence 5557887433 34477777666653
No 96
>KOG0040|consensus
Probab=88.81 E-value=0.0074 Score=53.50 Aligned_cols=56 Identities=29% Similarity=0.800 Sum_probs=50.1
Q ss_pred EEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG 81 (139)
Q Consensus 26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~ 81 (139)
+.|+|+|....+-+.+.++||+++++....-.||.+++.-+.|++|+.|++.+...
T Consensus 971 v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 971 VLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred HHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhccC
Confidence 56899999999999999999999988877789999999888899999999876544
No 97
>KOG3565|consensus
Probab=87.09 E-value=0.14 Score=42.43 Aligned_cols=53 Identities=21% Similarity=0.322 Sum_probs=41.1
Q ss_pred eeccccccccCCCceeeecCcEE-EEEcceeCCEEEEE-eCCCeEEeeecCCEEeC
Q psy6450 86 QVTHNLQIADGESGLSLLRDQIV-IQIGDEVDGMVMIR-NGENRQGVCPLKYLQEV 139 (139)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~g~~v-~~~~~~~~g~~~~~-~~~~~~G~~P~~~v~~~ 139 (139)
.+.+.|. +.+++.+.+.+|+++ ....+..+||=.++ ..++..|+||.+||+.+
T Consensus 582 ~a~~~~~-~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~ 636 (640)
T KOG3565|consen 582 KALYAFE-GQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVT 636 (640)
T ss_pred ecccCcC-CCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccc
Confidence 3455563 677788999999988 44566678998777 77779999999999853
No 98
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=86.01 E-value=1.4 Score=35.39 Aligned_cols=39 Identities=31% Similarity=0.516 Sum_probs=32.5
Q ss_pred cccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEec
Q psy6450 40 LDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKV 78 (139)
Q Consensus 40 Ls~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~ 78 (139)
-++.+|+.|.|+.....+|++.+. +|+.||+-..|+..-
T Consensus 103 gsl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~~ 142 (481)
T PRK13914 103 TSIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTDK 142 (481)
T ss_pred eeecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccCC
Confidence 468899999998645678999998 699999999998753
No 99
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=83.55 E-value=2.3 Score=23.73 Aligned_cols=23 Identities=30% Similarity=0.829 Sum_probs=20.0
Q ss_pred ccCCCCEEEEEECCCCCeeEEEE
Q psy6450 41 DLKPGYKVTVIDTSDQNWWKGKC 63 (139)
Q Consensus 41 s~~~gd~i~v~~~~~~~w~~~~~ 63 (139)
.|++|+.+.+....++.||.+..
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V 24 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVV 24 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEE
Confidence 57899999999877789999987
No 100
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=79.21 E-value=2.4 Score=25.23 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=16.5
Q ss_pred eeeecCcEEEEEcce------eCCEEEEE
Q psy6450 100 LSLLRDQIVIQIGDE------VDGMVMIR 122 (139)
Q Consensus 100 l~~~~g~~v~~~~~~------~~g~~~~~ 122 (139)
|++++|+.|++.... .+.|||+.
T Consensus 4 L~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~ 32 (75)
T PF11302_consen 4 LSVKPGDTVIVQDEQEVGQKQDKDWWMGQ 32 (75)
T ss_pred cccCCCCEEEEecCccccccCCCCcEEEE
Confidence 778889988776543 45788765
No 101
>KOG0199|consensus
Probab=78.00 E-value=2.8 Score=35.73 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=30.9
Q ss_pred cCCCceeeecCcEEEEEcceeCC-EEEEE-eCCCeEEeeecCCEE
Q psy6450 95 DGESGLSLLRDQIVIQIGDEVDG-MVMIR-NGENRQGVCPLKYLQ 137 (139)
Q Consensus 95 ~~~~~l~~~~g~~v~~~~~~~~g-~~~~~-~~~~~~G~~P~~~v~ 137 (139)
...+.|.+..||.|++++....| ||... .-+++.|.||.+.|.
T Consensus 386 ~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 386 IEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred cCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence 34456999999999877765544 45553 444678999999775
No 102
>KOG0040|consensus
Probab=77.18 E-value=0.061 Score=48.14 Aligned_cols=54 Identities=11% Similarity=0.252 Sum_probs=43.5
Q ss_pred cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450 84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139 (139)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~ 139 (139)
...+.++|+ ..+..+.+.+.||++....-....||.++..+ +.|++|+.|++.+
T Consensus 970 ~v~alyd~q-~kSprev~mKkgDvltll~s~nkdwwkve~~d-~qg~vpa~yvk~~ 1023 (2399)
T KOG0040|consen 970 CVLALYDYQ-EKSPREVTMKKGDVLTLLNSINKDWWKVEVND-RQGFVPAAYVKRL 1023 (2399)
T ss_pred HHHHHHHHH-hcCHHHHHHhhhhHHHHHhhcccccccchhhh-hcCcchHHHHHHh
Confidence 345677776 44555799999999877777778999999999 9999999998753
No 103
>KOG3812|consensus
Probab=77.14 E-value=1.1 Score=34.45 Aligned_cols=36 Identities=11% Similarity=0.046 Sum_probs=29.2
Q ss_pred ceeeecCcEEEEEcceeCCEEEEE--eCCCeEEeeecC
Q psy6450 99 GLSLLRDQIVIQIGDEVDGMVMIR--NGENRQGVCPLK 134 (139)
Q Consensus 99 ~l~~~~g~~v~~~~~~~~g~~~~~--~~~~~~G~~P~~ 134 (139)
.++|..-|++.+..+..+.||.+| ..++..|++|+-
T Consensus 81 aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPsp 118 (475)
T KOG3812|consen 81 AISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSP 118 (475)
T ss_pred eeeeccccceeehhhcccchhHHHHhhcCCccccccch
Confidence 388999999988889999999766 455588999973
No 104
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=73.05 E-value=10 Score=21.08 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=22.3
Q ss_pred CcccCCCCEEEEEECC-CCCeeEEEECCeEEEEcC
Q psy6450 39 ELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPS 72 (139)
Q Consensus 39 eLs~~~gd~i~v~~~~-~~~w~~~~~~g~~G~~P~ 72 (139)
+-.+..|+-|.|++.. +..|..+......||+++
T Consensus 20 ~s~l~~gtPv~i~H~S~D~~W~fV~t~~~~GWV~s 54 (54)
T PF12913_consen 20 NSALHPGTPVYILHTSRDGAWAFVQTPFYSGWVKS 54 (54)
T ss_dssp EEEE-TT-EEEEEEE-TTSSEEEEE-SS-EEEEEG
T ss_pred hcccCCCCCEEEEEECCCCCEEEEecCCeeEeeeC
Confidence 3467788888887765 567989888888899863
No 105
>KOG3705|consensus
Probab=63.06 E-value=5.1 Score=31.71 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=35.4
Q ss_pred cccCCCceeeecCcEEEEEcceeCCEEEEEe-CCCeEEeeecCCEEe
Q psy6450 93 IADGESGLSLLRDQIVIQIGDEVDGMVMIRN-GENRQGVCPLKYLQE 138 (139)
Q Consensus 93 ~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~-~~~~~G~~P~~~v~~ 138 (139)
.++...++.+..||+|-+-+..++|.-.+.+ -.++.|+||+--|++
T Consensus 519 ~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 519 IPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred CCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence 4666778999999999888888888865553 335779999976653
No 106
>KOG3580|consensus
Probab=53.51 E-value=30 Score=29.06 Aligned_cols=50 Identities=18% Similarity=0.285 Sum_probs=36.7
Q ss_pred EEEEEeeecCCCCCCcccCCCCEEEEEECC----CCCeeEEEECC-----eEEEEcCCc
Q psy6450 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTS----DQNWWKGKCMG-----RVGYFPSNY 74 (139)
Q Consensus 25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~----~~~w~~~~~~g-----~~G~~P~~~ 74 (139)
+.+.-|.++...+..|.|.+|+++.++... .+.|...+.+. ..|++|...
T Consensus 506 yIRtHFE~Eke~P~gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPNks 564 (1027)
T KOG3580|consen 506 YIRTHFECEKETPQGLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPNKS 564 (1027)
T ss_pred EEeeeeeecCCCCccccccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCCcc
Confidence 356678899999999999999999987642 23566666522 368888643
No 107
>KOG4384|consensus
Probab=51.13 E-value=8.7 Score=29.66 Aligned_cols=54 Identities=26% Similarity=0.391 Sum_probs=44.0
Q ss_pred EEEEeeecC--CCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecC
Q psy6450 26 FVVLYNFKS--RHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79 (139)
Q Consensus 26 ~~al~~~~~--~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~ 79 (139)
+++.-+|.. ...++|.+++|+++.++....-+-|.+-..++.|-|+.-|+..+.
T Consensus 139 ~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~s 194 (361)
T KOG4384|consen 139 ARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVIS 194 (361)
T ss_pred ccccccCCCCcccccchhhcccchhhccccCccccccccccCcccccccceecccc
Confidence 445555654 467889999999999999887888999999999999998887665
No 108
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=45.17 E-value=51 Score=19.09 Aligned_cols=30 Identities=13% Similarity=0.127 Sum_probs=19.9
Q ss_pred ecCcEE--EEEcceeCCEEEEEeCCCeEEeeec
Q psy6450 103 LRDQIV--IQIGDEVDGMVMIRNGENRQGVCPL 133 (139)
Q Consensus 103 ~~g~~v--~~~~~~~~g~~~~~~~~~~~G~~P~ 133 (139)
..|+++ .+.+-...|.| +.-+.+..|++|.
T Consensus 2 k~G~~V~g~V~~i~~~G~f-V~l~~~v~G~v~~ 33 (74)
T cd05705 2 KEGQLLRGYVSSVTKQGVF-FRLSSSIVGRVLF 33 (74)
T ss_pred CCCCEEEEEEEEEeCCcEE-EEeCCCCEEEEEH
Confidence 467766 34444456777 6766678899983
No 109
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=43.23 E-value=33 Score=19.60 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=11.6
Q ss_pred cCCCCEEEEEECCC---CCeeEEEE
Q psy6450 42 LKPGYKVTVIDTSD---QNWWKGKC 63 (139)
Q Consensus 42 ~~~gd~i~v~~~~~---~~w~~~~~ 63 (139)
|++|+.+.|....+ ..|+.+..
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V 25 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATV 25 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEE
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEE
Confidence 68899999987643 24555544
No 110
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=37.86 E-value=51 Score=19.40 Aligned_cols=32 Identities=13% Similarity=0.011 Sum_probs=19.6
Q ss_pred ecCcEE--EEEcceeCCEEEEEeCCCeEEeeecCC
Q psy6450 103 LRDQIV--IQIGDEVDGMVMIRNGENRQGVCPLKY 135 (139)
Q Consensus 103 ~~g~~v--~~~~~~~~g~~~~~~~~~~~G~~P~~~ 135 (139)
..|++| .+..-...||+ +.-..+..|++|.+-
T Consensus 5 ~~GdiV~g~V~~i~~~g~~-v~i~~~~~G~l~~se 38 (86)
T cd05789 5 EVGDVVIGRVTEVGFKRWK-VDINSPYDAVLPLSE 38 (86)
T ss_pred CCCCEEEEEEEEECCCEEE-EECCCCeEEEEEHHH
Confidence 467766 33333334544 676666889999763
No 111
>COG3807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.57 E-value=91 Score=21.35 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=25.4
Q ss_pred cccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcE
Q psy6450 40 LDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYV 75 (139)
Q Consensus 40 Ls~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v 75 (139)
+.+++|.-+.|+++. ..|-+.+- +|.+||+-.+.+
T Consensus 59 ~y~k~GlPVEIvqEy-~~WRrirDadG~egWv~qsll 94 (171)
T COG3807 59 VYLKKGLPVEIVQEY-DNWRRIRDADGTEGWVHQSLL 94 (171)
T ss_pred eeeccCCceehhhhh-hhhhheeCCCCCceeeeeecc
Confidence 556788888888865 35666665 889999866554
No 112
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=31.54 E-value=1e+02 Score=17.30 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=20.4
Q ss_pred ecCcEE--EEEcceeCCEEEEEeCCCeEEeeecCCE
Q psy6450 103 LRDQIV--IQIGDEVDGMVMIRNGENRQGVCPLKYL 136 (139)
Q Consensus 103 ~~g~~v--~~~~~~~~g~~~~~~~~~~~G~~P~~~v 136 (139)
..|+++ .+..-...|.| +.-.++..|++|.+-+
T Consensus 3 ~~G~iv~g~V~~v~~~g~~-V~l~~~~~g~ip~~~l 37 (74)
T PF00575_consen 3 KEGDIVEGKVTSVEDFGVF-VDLGNGIEGFIPISEL 37 (74)
T ss_dssp STTSEEEEEEEEEETTEEE-EEESTSSEEEEEGGGS
T ss_pred CCCCEEEEEEEEEECCEEE-EEECCcEEEEEEeehh
Confidence 456766 22333334555 7777778999998754
No 113
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain.
Probab=27.96 E-value=1.1e+02 Score=16.46 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=12.3
Q ss_pred CCEEEEEeCCCeEEeeecCC
Q psy6450 116 DGMVMIRNGENRQGVCPLKY 135 (139)
Q Consensus 116 ~g~~~~~~~~~~~G~~P~~~ 135 (139)
.|++ +.-..+..|++|.+.
T Consensus 16 ~g~~-v~i~~~~~g~l~~~~ 34 (72)
T smart00316 16 FGAF-VDLGNGVEGLIPISE 34 (72)
T ss_pred cEEE-EEeCCCCEEEEEHHH
Confidence 4444 666656788888653
No 114
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=26.84 E-value=85 Score=17.79 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=10.6
Q ss_pred eeecCcEEEEEcceeCCEEEEE
Q psy6450 101 SLLRDQIVIQIGDEVDGMVMIR 122 (139)
Q Consensus 101 ~~~~g~~v~~~~~~~~g~~~~~ 122 (139)
.+.+|+.|+..++..++.|.+.
T Consensus 3 ~~~~g~~i~~~g~~~~~~~~i~ 24 (91)
T PF00027_consen 3 TYKKGEVIYRQGDPCDHIYIIL 24 (91)
T ss_dssp EESTTEEEEETTSBESEEEEEE
T ss_pred EECCCCEEEeCCCcCCEEEEEE
Confidence 3445555554555445444443
No 115
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=25.06 E-value=1.2e+02 Score=16.05 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=16.3
Q ss_pred ccCCCCEEEEEECCCCCeeEEEE
Q psy6450 41 DLKPGYKVTVIDTSDQNWWKGKC 63 (139)
Q Consensus 41 s~~~gd~i~v~~~~~~~w~~~~~ 63 (139)
.++.|+.+.+.- .++.|++++.
T Consensus 2 ~~~~G~~~~a~~-~d~~wyra~I 23 (57)
T smart00333 2 TFKVGDKVAARW-EDGEWYRARI 23 (57)
T ss_pred CCCCCCEEEEEe-CCCCEEEEEE
Confidence 467787777666 5778988876
No 116
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=22.76 E-value=1.2e+02 Score=25.19 Aligned_cols=37 Identities=19% Similarity=0.491 Sum_probs=28.4
Q ss_pred CCEEEEEECC-----CCCeeEEEE-CCeEEEEcCCcEEecCCC
Q psy6450 45 GYKVTVIDTS-----DQNWWKGKC-MGRVGYFPSNYVIKVQPG 81 (139)
Q Consensus 45 gd~i~v~~~~-----~~~w~~~~~-~g~~G~~P~~~v~~~~~~ 81 (139)
|+.+.|.+.. +-.|..... +|..||+-..++.++...
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (549)
T PRK13545 375 GDIFTISDSNKNEKKDVEWIQITLSNGEIGWISTKFIEPFKSN 417 (549)
T ss_pred CceEEEcccccccccCcceEEEEecCCccceeeeeeeeecccC
Confidence 7777776542 347999888 899999999999887643
No 117
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=22.68 E-value=1.7e+02 Score=16.93 Aligned_cols=34 Identities=6% Similarity=-0.209 Sum_probs=20.7
Q ss_pred ecCcEE-EEEcceeCCEEEEEeCCCeEEeeecCCE
Q psy6450 103 LRDQIV-IQIGDEVDGMVMIRNGENRQGVCPLKYL 136 (139)
Q Consensus 103 ~~g~~v-~~~~~~~~g~~~~~~~~~~~G~~P~~~v 136 (139)
..|++| .......+.+|.+.-.....|++|.+-+
T Consensus 5 ~~GdiV~G~V~~v~~~~~~V~i~~~~~g~l~~~~~ 39 (82)
T cd04454 5 DVGDIVIGIVTEVNSRFWKVDILSRGTARLEDSSA 39 (82)
T ss_pred CCCCEEEEEEEEEcCCEEEEEeCCCceEEeechhc
Confidence 467776 2223333445557777667899887654
No 118
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=21.82 E-value=1.6e+02 Score=16.41 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=11.1
Q ss_pred CCEEEEEeCCCeEEeeecCC
Q psy6450 116 DGMVMIRNGENRQGVCPLKY 135 (139)
Q Consensus 116 ~g~~~~~~~~~~~G~~P~~~ 135 (139)
.|.+ ++-.++..|+++.+-
T Consensus 17 ~gi~-v~l~~~~~g~v~~s~ 35 (73)
T cd05706 17 RYVL-VQLGNKVTGPSFITD 35 (73)
T ss_pred CeEE-EEeCCCcEEEEEhhh
Confidence 3444 555555777777653
No 119
>KOG2130|consensus
Probab=20.32 E-value=1.7e+02 Score=22.79 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=18.7
Q ss_pred CCCCcccCCCCEEEEEECCCCCeeEEEEC
Q psy6450 36 HADELDLKPGYKVTVIDTSDQNWWKGKCM 64 (139)
Q Consensus 36 ~~~eLs~~~gd~i~v~~~~~~~w~~~~~~ 64 (139)
.+-|.....|+.+.| .+|||++..+
T Consensus 261 kPIEc~q~pGEt~fV----P~GWWHvVlN 285 (407)
T KOG2130|consen 261 KPIECLQKPGETMFV----PSGWWHVVLN 285 (407)
T ss_pred CCceeeecCCceEEe----cCCeEEEEec
Confidence 456678888888865 4599999873
Done!