RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6450
(139 letters)
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 85.8 bits (213), Expect = 2e-23
Identities = 17/63 (26%), Positives = 39/63 (61%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGER 83
L + LY+++ + E+ +K G +T++++++++WWK + R G+ P+ YV K+ P +
Sbjct: 6 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQS 65
Query: 84 PLQ 86
+
Sbjct: 66 ASR 68
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 84.4 bits (209), Expect = 1e-22
Identities = 16/59 (27%), Positives = 36/59 (61%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
L + LY+++ + E+ +K G +T++++++++WWK + R G+ P+ YV K+
Sbjct: 18 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAAAW 76
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 84.0 bits (208), Expect = 1e-22
Identities = 17/61 (27%), Positives = 38/61 (62%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGER 83
L + LY+++ + E+ +K G +T++++++++WWK + R G+ P+ YV K+ P +
Sbjct: 3 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQS 62
Query: 84 P 84
Sbjct: 63 A 63
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 82.8 bits (205), Expect = 3e-22
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQ 79
+ LF LY++++R D+L G K ++++S+ +WW+ + + G GY PS Y+ V
Sbjct: 4 ISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVD 63
Query: 80 PGE 82
+
Sbjct: 64 RLD 66
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 82.8 bits (205), Expect = 3e-22
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQ----NWWKGKCMGRVGYFPSNYVIK 77
++ +Y FK+R+ +EL + K+ +++ D WW + G+ GY PSNY+ K
Sbjct: 12 GNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRK 71
Query: 78 VQPGERP 84
+ G
Sbjct: 72 TESGPSS 78
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 81.5 bits (202), Expect = 8e-22
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKVQP 80
V LY++ +A++L L+ G + +++ S+ WW+ + G+ GY PSNYV + +
Sbjct: 7 ELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED 66
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 81.7 bits (202), Expect = 1e-21
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIKVQP 80
+ + LY++++ EL L+ + ++D+S+ +WW+ + G GY PS+Y+++ P
Sbjct: 18 EETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSP 77
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 81.1 bits (201), Expect = 1e-21
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
VL+ F +EL + PG V V+ + NW G+ G P NY+ V
Sbjct: 10 HRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVSG 64
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3
domain, phosphorylation; NMR {Mus musculus} SCOP:
b.34.2.1
Length = 67
Score = 80.7 bits (200), Expect = 2e-21
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKVQPG 81
+ + V +Y+F++ A +L L+ G + +++ +D +WW+ + G GY PSNYV +
Sbjct: 2 SEIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSN 61
Query: 82 E 82
Sbjct: 62 N 62
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 81.4 bits (201), Expect = 2e-21
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQ 86
V +N+ + DEL L G KV V++ WW+G G+VG+FPSNYV +
Sbjct: 21 YVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSPLGDH 80
Query: 87 V 87
V
Sbjct: 81 V 81
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 81.7 bits (202), Expect = 2e-21
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQ 79
+FV LY++++R ++L K G + +I+ ++ +WW+ + + G+ GY PSNYV+
Sbjct: 26 GVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPAD 85
Query: 80 PGERPLQVTHNLQIADGESGLS 101
+ + D ESG S
Sbjct: 86 SIQAEEWYFGKMGRKDAESGPS 107
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 80.3 bits (199), Expect = 2e-21
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQ 79
N+FV L+ + + +ELDL+ G + V+ W KG + GR G FPS+YVI V
Sbjct: 8 NMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVS 65
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics,
SH3 domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 80.4 bits (199), Expect = 3e-21
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
+NFK + DEL + G + V + WW+G GR G+FPSNYV +++ ER
Sbjct: 15 ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSERS 71
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 80.5 bits (199), Expect = 3e-21
Identities = 14/59 (23%), Positives = 27/59 (45%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPL 85
V + + R A EL + G + + + + +WW+G+ G G P Y+ E+ +
Sbjct: 14 VACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTEKQV 72
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein;
1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A
1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A
1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A
...
Length = 62
Score = 80.0 bits (198), Expect = 3e-21
Identities = 18/55 (32%), Positives = 38/55 (69%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L +VLY+++ + EL +K G +T++++++++WWK + GR G+ P+ Y+ K+
Sbjct: 7 ELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL 61
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C
4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A
1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C
1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 80.1 bits (198), Expect = 5e-21
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPG 81
LFV LY++ + +L G K +++ +WW+ + + G GY PSNYV V
Sbjct: 7 TLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSI 66
Query: 82 E 82
+
Sbjct: 67 Q 67
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 79.2 bits (196), Expect = 7e-21
Identities = 25/50 (50%), Positives = 29/50 (58%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
F LY F+ R DEL + G + + D SD NWWKG GR G PSNYV
Sbjct: 10 FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 59
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 78.3 bits (194), Expect = 9e-21
Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
+F LY F+ R DEL + G + + D SD NWWKG GR G PSNYV
Sbjct: 5 VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 55
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins,
CIN85, PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 78.4 bits (194), Expect = 1e-20
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
+NF+ + DEL G + V + WW+G GR G+FPSNYV +++P
Sbjct: 10 RAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIKP 63
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 71
Score = 78.5 bits (194), Expect = 1e-20
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
+V + + S+ DE+ + G V VI + + WW + +G+ G+ P++Y+ K +
Sbjct: 11 YVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDSG 67
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 78.4 bits (194), Expect = 1e-20
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
FV + ++ + +L G K+ ++ + +WW G+ G GY P+N+V K
Sbjct: 10 FVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHS 63
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 78.5 bits (194), Expect = 1e-20
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
LY+F++R DEL+L+ G V + + ++ WW G G+ G+FP+ YV ++
Sbjct: 11 KALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAGN 68
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 79.0 bits (195), Expect = 1e-20
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 21 LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
+ + V LY++ S D+L + G ++ V++ S WWK + + + GY PSNYV +V
Sbjct: 1 MEDIIVVALYDYVSWSPDDLSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYVARV 59
Query: 79 QPGERP 84
G
Sbjct: 60 DSGGGT 65
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 78.5 bits (194), Expect = 2e-20
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
LFV LY++++ D+L G K ++++S+ +WW+ + + G GY PSNYV V
Sbjct: 14 GVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 78.6 bits (194), Expect = 2e-20
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
LY+F++ +EL K G + V+D SD NWWKG+ +G FPSN+V E
Sbjct: 21 RALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETE 78
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 78.6 bits (194), Expect = 2e-20
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQ 86
V +++ ++ DEL+LK G + V+ ++ WW+G G+ G FPSN++ ++ L
Sbjct: 22 QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELG 81
Query: 87 VTHNLQ 92
++ +
Sbjct: 82 ISQDEH 87
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 77.7 bits (192), Expect = 3e-20
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
+ +++ R A EL K G + + + +WW+G+ G G P Y+ VQ P
Sbjct: 13 IAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYI-VVQDTSGP 69
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels,
signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP:
b.34.2.1 PDB: 1h92_A 1kik_A
Length = 62
Score = 77.3 bits (191), Expect = 3e-20
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 21 LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIK 77
L NL + L++++ H +L + G ++ +++ S WWK + + G+ G+ P N+V K
Sbjct: 4 LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKAQSLTTGQEGFIPFNFVAK 61
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 78.2 bits (193), Expect = 3e-20
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQ 86
+ +Y++ + + DEL G + V++ D +WW+G+ G G FPSNYV P
Sbjct: 38 IAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSSGPSS 97
Score = 31.2 bits (71), Expect = 0.033
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 24/91 (26%)
Query: 65 GRVGYFPSNYVIKVQP-GERPLQVTHNLQIA----------DGESGLSLLRDQIVIQIGD 113
G+ G+FP+++V + P ER H + + E LS + Q+ I + +
Sbjct: 7 GQKGWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDE--LSFSKGQL-INVMN 63
Query: 114 EVD-----GMVMIRNGENRQGVCPLKYLQEV 139
+ D G + NG G+ P Y++
Sbjct: 64 KDDPDWWQGEI---NG--VTGLFPSNYVKMT 89
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 77.3 bits (191), Expect = 3e-20
Identities = 20/54 (37%), Positives = 39/54 (72%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
V LY F + ++L+++PG +T+++ S+++WWKGK R+G+FP+N+V ++
Sbjct: 11 VALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLSG 64
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 77.0 bits (190), Expect = 6e-20
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVID--TSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
V YNF +R EL L+ G V + DQ WWKG+ GR+G+FPS YV + P
Sbjct: 11 VARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGIQSGP 70
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 76.5 bits (189), Expect = 6e-20
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
VL+ + ++ DEL+LK G + + + ++ WW G ++G FPSN+V +++
Sbjct: 5 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELEHHH 62
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 76.5 bits (189), Expect = 7e-20
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
++FK++ EL L+ G V + DQNW++G+ GRVG FP Y+
Sbjct: 11 RAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYI 59
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 76.5 bits (189), Expect = 7e-20
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQ 79
++ V LY + H D+L K G K+ V++ WWK K + + G+ PSNYV K+
Sbjct: 6 QGDIVVALYPYDGIHPDDLSFKKGEKMKVLE-EHGEWWKAKSLLTKKEGFIPSNYVAKLN 64
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 76.1 bits (188), Expect = 1e-19
Identities = 17/54 (31%), Positives = 33/54 (61%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
VL+ + ++ DEL+LK G + + + ++ WW G ++G FPSN+V +++
Sbjct: 11 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELEV 64
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 75.7 bits (187), Expect = 1e-19
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
+V ++++++H DEL + G +T I D WW+G+ GR G FP N+V +++
Sbjct: 5 IVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIK 57
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 76.2 bits (188), Expect = 1e-19
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQV 87
L +F+ DEL + +T+I D++ W G+ G G+FP+ +V + + +
Sbjct: 13 LLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSI 71
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 75.8 bits (187), Expect = 1e-19
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG 81
+VV+ N+K + EL L+ G V VI+ ++ WW G+ P+ Y+ G
Sbjct: 11 YVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSG 66
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain
protein 2A, endophilin 1, EEN-B1, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 75.8 bits (187), Expect = 1e-19
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
LY+F+ + EL K G +T+ + D+NW++G G G+FP NYV +
Sbjct: 13 LYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHS 68
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 75.9 bits (187), Expect = 1e-19
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
L + + E+ +K G +T++++++++WWK + R G+ P+ YV K+ G
Sbjct: 4 PPLPPYSAG-GREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGK 60
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 68
Score = 75.7 bits (187), Expect = 2e-19
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
V +++ ++ DEL+LK G + V+ ++ WW+G G+ G FPSN++
Sbjct: 11 QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 59
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold
protein 1, islet-brain-1, IB-1, mitogen-activated P
kinase 8-interacting protein 1; 3.00A {Rattus
norvegicus}
Length = 71
Score = 75.8 bits (187), Expect = 2e-19
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPGER 83
++ F RH DEL+L+ + V ++ W++ M G G FP+ Y I+V
Sbjct: 9 HRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKEPE 68
Query: 84 PL 85
+
Sbjct: 69 HM 70
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like
protein; SH3, EPS8, EPS8L2, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 75.4 bits (186), Expect = 2e-19
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
+LY+F +R+A+EL + + V++ Q W G+ GY P N + +
Sbjct: 9 YVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGEASG 64
Score = 25.7 bits (57), Expect = 1.7
Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 94 ADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139
A + LS+L+D++ +++ ++ +R+ + G P L E
Sbjct: 18 ARNANELSVLKDEV-LEVLEDGRQWWKLRSRSGQAGYVPCNILGEA 62
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 75.6 bits (186), Expect = 3e-19
Identities = 10/64 (15%), Positives = 26/64 (40%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG 81
++ ++ E+ G +V V++ + WW + G+ PS+Y++ +
Sbjct: 7 GATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENE 66
Query: 82 ERPL 85
+
Sbjct: 67 QPDP 70
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 75.0 bits (185), Expect = 3e-19
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
+NF+ + DEL G + V + WW+G GR G+FPSNYV
Sbjct: 8 RAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 56
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2
domain, signaling protein; NMR {Homo sapiens}
Length = 72
Score = 75.0 bits (185), Expect = 3e-19
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIKVQP 80
+ V +++ ++ ELD+K ++ ++D S +WW+ + M + G+ PSNYV +
Sbjct: 6 EEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSK-SWWRVRNSMNKTGFVPSNYVERKNS 64
Query: 81 GERP 84
Sbjct: 65 ARAA 68
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C*
2o88_A 1bbz_A 1awo_A
Length = 63
Score = 74.9 bits (185), Expect = 3e-19
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
NLFV LY+F + + L + G K+ V+ + W + + G+ PS Y+ V
Sbjct: 6 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN 62
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 75.5 bits (186), Expect = 3e-19
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYV 75
L + LY++++ EL L+ + ++D+S+ +WW+ + G GY PS+Y+
Sbjct: 19 EETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYL 73
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 74.9 bits (185), Expect = 3e-19
Identities = 12/49 (24%), Positives = 29/49 (59%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
L+++++ ++L+ + G + V+ ++ W +G+ G+VG FP +V
Sbjct: 9 EALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFV 57
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif)
2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 74.9 bits (185), Expect = 3e-19
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
LY+F++ +EL K G +TV+D SD NWW+G+ G FPSN+V
Sbjct: 9 RALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 75.1 bits (185), Expect = 3e-19
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
V LY++++ DE+ P +T I+ D WW+G C GR G FP+NYV Q G
Sbjct: 21 VALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGP 76
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 78.5 bits (193), Expect = 3e-19
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 11/123 (8%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQ 86
+ +++ E+ L G V V++ S+ WW + + G+ P++++ + +
Sbjct: 15 RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETED 74
Query: 87 VTHNLQI----------ADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYL 136
N A +SLL + V I +DG +IR + G P YL
Sbjct: 75 PEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD-DVTGYFPSMYL 133
Query: 137 QEV 139
Q+
Sbjct: 134 QKS 136
Score = 72.3 bits (177), Expect = 6e-17
Identities = 20/82 (24%), Positives = 29/82 (35%)
Query: 7 LITLHDLTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGR 66
+ D T+ +V + + + DE+ L G V VI WW +
Sbjct: 65 PLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDV 124
Query: 67 VGYFPSNYVIKVQPGERPLQVT 88
GYFPS Y+ K Q
Sbjct: 125 TGYFPSMYLQKSGQDVSQAQRQ 146
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 74.5 bits (184), Expect = 3e-19
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
L++F + EL + G + V+D SD NWWKG C G+ G FP NYV
Sbjct: 8 LFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 75.0 bits (185), Expect = 3e-19
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
LY++ +++ DELDL G + VI + WW + G+ G+ P +Y+ K+
Sbjct: 12 RALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKL 63
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 74.5 bits (184), Expect = 3e-19
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
LY F + +L LKPG KV +++ W+KG C GR G FP+NYV
Sbjct: 6 EALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYV 54
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling
protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 74.6 bits (184), Expect = 4e-19
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
V++ +++++ DEL +K G VT+I D D WW+G+ GR G FP N+V + P E
Sbjct: 6 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPLEHH 65
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 76.1 bits (187), Expect = 4e-19
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGR---VGYFPSNYV-IKVQPGE 82
V LY FK+ DELD+ PG +++ D W+ K + R G P +YV I
Sbjct: 7 VTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLMDP 66
Query: 83 RPLQVTHNLQIADGESGLS 101
+
Sbjct: 67 AKYASVDTYDREQVMKIID 85
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 75.2 bits (185), Expect = 4e-19
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPG 81
+ V LY++++ H ++L + G ++ V++ S WWK + + + GY PSNYV +V
Sbjct: 26 IIVVALYDYEAIHHEDLSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYVARVDSL 84
Query: 82 E 82
E
Sbjct: 85 E 85
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 74.2 bits (183), Expect = 5e-19
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
+ ++F+++ EL L+ G V + D+NW +G+ GR+G FP+NYV
Sbjct: 6 LKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYV 53
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural
genomics, northeast structural genomics consortiu
PSI-2, protein structure initiative; NMR {Homo sapiens}
Length = 72
Score = 74.3 bits (183), Expect = 5e-19
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
+Y+F++ +EL K G +TV+D SD NWWKG+ +G FPSN+V
Sbjct: 21 RAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 75.6 bits (186), Expect = 6e-19
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRV---GYFPSNYV-IKVQPGE 82
+VLY+FK+ ADEL G + + + W+ K +GR+ G P +V I
Sbjct: 9 IVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIATG 68
Query: 83 RPLQ 86
Sbjct: 69 YATG 72
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 74.4 bits (183), Expect = 6e-19
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM---------GRVGYFPS 72
FV L+++++R A++L + G K+ V+DTS + WW + + GY PS
Sbjct: 6 SGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPS 65
Query: 73 NYVIKVQ 79
NYV +
Sbjct: 66 NYVAEDS 72
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein
3, protein-protein interaction, structural genomics;
NMR {Homo sapiens}
Length = 68
Score = 74.2 bits (183), Expect = 6e-19
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
VLY F++R+ EL + G K+ V+D S + W GR GY PSN + +
Sbjct: 10 MQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPLSGPS 66
Score = 26.4 bits (59), Expect = 0.97
Identities = 8/46 (17%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 94 ADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139
A L++++ + +++ D +++N R G P L+ +
Sbjct: 18 ARNPRELTVVQGEK-LEVLDHSKRWWLVKNEAGRSGYIPSNILEPL 62
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 73.7 bits (182), Expect = 8e-19
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
LY+F++ DEL + G V V+D+S+ +WW G+ ++G FP+NYV
Sbjct: 5 RALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 53
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42
guanine nucleotide exchange factor (GEF) 9, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 74.4 bits (183), Expect = 8e-19
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQ 86
+++ + EL K G + V+D S+++WW G+ G+FP+++V E ++
Sbjct: 16 VWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQEDEVE 73
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein;
2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB:
2sem_A 3sem_A 1k76_A 1kfz_A
Length = 58
Score = 73.3 bits (181), Expect = 8e-19
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
L++F + + EL K G +T+I+ D NWW+G+ R G FPSNYV
Sbjct: 6 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 73.8 bits (182), Expect = 9e-19
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
++ LY + S +L G ++ V D WW G R G FPSNYV G
Sbjct: 11 YIALYPYSSVEPGDLTFTEGEEILVTQ-KDGEWWTGSIGDRSGIFPSNYVKPKDSGP 66
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 74.5 bits (183), Expect = 9e-19
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 14 TQKAHRLLPTNLFVVLYNFKSRHA--------DELDLKPGYKVTVIDTSDQN-WWKGKCM 64
T LP +FV L+++ +EL K G + V D + +++G+
Sbjct: 8 TDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETC 67
Query: 65 GRVGYFPSNYVIKVQPGERPLQVTH 89
R+G P N V ++Q + +
Sbjct: 68 ARLGLIPCNMVSEIQADDEEMMDQS 92
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 73.8 bits (182), Expect = 9e-19
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIKVQ 79
++ + +F ++ +L K G + VI+ WW K G G P Y+
Sbjct: 13 YIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYS 67
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 73.4 bits (181), Expect = 1e-18
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
LY++ ++ DEL K G + V WW+G+ G+ G+ P+NYV
Sbjct: 7 KALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 55
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil,
cytoplasm, SH3 domain, signaling protein; NMR {Homo
sapiens} PDB: 2rol_A
Length = 68
Score = 73.1 bits (180), Expect = 1e-18
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIKVQP 80
+ Y+F++R++ EL +K + V+D S WWK + G+ GY P N +
Sbjct: 7 ALKWVLCNYDFQARNSSELSVKQRDVLEVLDDSR-KWWKVRDPAGQEGYVPYNILTPYPA 65
Query: 81 GE 82
Sbjct: 66 AA 67
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 73.6 bits (181), Expect = 2e-18
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 21 LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
L ++ VL ++ S + G K+ VI + WWK + GR Y P V +V
Sbjct: 15 LDSDFLAVLSDYPSPDISPPIFRRGEKLRVIS-DEGGWWKAISLSTGRESYIPGICVARV 73
Query: 79 QPGE 82
Sbjct: 74 SGPS 77
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton,
phosphorylation, SH3 domain, DNA damage, DNA repair,
nucleus; NMR {Saccharomyces cerevisiae}
Length = 71
Score = 73.1 bits (180), Expect = 2e-18
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVI-DTSDQNWWKGKCM--GRVGYFPSNYVIKVQPGE 82
+V Y+F + DEL +K G KV ++ D ++WW + + G+ G P+ ++ V+ +
Sbjct: 9 GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDKK 68
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 73.2 bits (180), Expect = 2e-18
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
V +Y++ DEL + G + VI +D W++G G G FP NYV +
Sbjct: 21 VAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESISG 74
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 72.6 bits (179), Expect = 2e-18
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
LY + ++ DEL + +I WW G+ G+ G FP+NYV
Sbjct: 9 KALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYV 57
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 72.6 bits (179), Expect = 2e-18
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
+ +++ R A EL K G + + + ++WW+G+ G G P Y+
Sbjct: 10 IAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYI 58
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 72.5 bits (179), Expect = 2e-18
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
L++F EL+ K G + ++ +++W +G G G FP ++V
Sbjct: 8 EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 56
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 72.7 bits (179), Expect = 2e-18
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
+ +Y ++ ++ DEL+L+ G +V V+ D W+ G + G FP NYV V
Sbjct: 8 TPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPV 64
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 72.9 bits (179), Expect = 2e-18
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 35 RHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQVTHNLQIA 94
E+ +K G +T++++++++WWK + R G+ P+ YV K+ G V
Sbjct: 3 MGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDYQ 62
Query: 95 D 95
+
Sbjct: 63 E 63
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 72.6 bits (179), Expect = 3e-18
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
L N++ ++ +L G + + D+NW++G+ G G FP++ V +
Sbjct: 11 KALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVISG 64
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 72.7 bits (179), Expect = 3e-18
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
LY+F+ + EL + G +T+ + D+NW++G G+ G+FP +YV + P
Sbjct: 17 KALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLVP 70
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 72.2 bits (178), Expect = 3e-18
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYV 75
L++F ++L K G + + D ++ WW + G+ G P YV
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 72.3 bits (178), Expect = 3e-18
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
LY+F+ + EL K G +T+ + D+NW++G G G+FP NYV + P E
Sbjct: 7 RGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPLEHH 64
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 72.4 bits (178), Expect = 4e-18
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
V++ +++++ DEL +K G VT+I D D WW+G+ GR G FP N+V + P
Sbjct: 13 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFEK 72
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 71.9 bits (177), Expect = 4e-18
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKVQPGE 82
+ + +++ ++ ELD+K ++ ++D S WW+ + R GY PSNYV +
Sbjct: 5 VIVIAKWDYTAQQDQELDIKKNERLWLLDDSK-TWWRVRNAANRTGYVPSNYVERKLEHH 63
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 72.3 bits (178), Expect = 4e-18
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVI-DTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPL 85
+ Y+FK+ DEL K G + V+ + DQNW+K + G+ G+ P NY+ E +
Sbjct: 13 IAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPEFIV 72
Query: 86 Q 86
Sbjct: 73 T 73
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 72.5 bits (178), Expect = 4e-18
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPL 85
LY F++R+ DE+ G + V + W G G G+FP NYV K+ E
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENEK 69
Query: 86 QVT 88
V+
Sbjct: 70 AVS 72
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 85
Score = 72.5 bits (178), Expect = 5e-18
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 22 PTNLFVV-LYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYVIKV 78
+ +V+ L ++ + + L G + ++ T + W G GR G FP++ V
Sbjct: 6 SGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPA 65
Query: 79 QPGERPL 85
+
Sbjct: 66 AAPDFSF 72
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 74.0 bits (181), Expect = 5e-18
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPL 85
Y+F +R EL LK G + +++ Q WW+G+ GR+G+FPSNYV + P
Sbjct: 9 KARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSEYLPE 68
Query: 86 QVTHN 90
+
Sbjct: 69 TGGGS 73
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 71.9 bits (177), Expect = 5e-18
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
L++F EL+ K G + ++ +++W +G G G FP ++V ++
Sbjct: 22 EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKD 75
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 71.4 bits (176), Expect = 6e-18
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVI-DTSDQNWWKGKCM--GRVGYFPSNYV 75
+V Y+F + DEL +K G KV ++ D ++WW + + G+ G P+ ++
Sbjct: 5 GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFI 57
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 71.5 bits (176), Expect = 7e-18
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
+ LY++++ DE+ P +T I+ D WW+G C GR G FP+NYV
Sbjct: 13 IALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 61
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 71.6 bits (176), Expect = 7e-18
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPGERP 84
V LY+F+ + +EL L G V + Q W + + G P +V +QP
Sbjct: 9 VALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPELEH 68
Query: 85 LQVTH 89
H
Sbjct: 69 HHHHH 73
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 72.1 bits (177), Expect = 8e-18
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVID--TSDQNWWKGK-CMGRVGYFPSNYVIKV 78
++ LY F S +EL+ + G + VI+ +D WWK K G+VG P NYV+ +
Sbjct: 16 VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVL 75
Query: 79 QPGE 82
G
Sbjct: 76 SDGP 79
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 71.1 bits (175), Expect = 9e-18
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIKVQP 80
L++F ++L K G + + D ++ WW + G+ G P YV K
Sbjct: 7 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHH 61
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 70.8 bits (174), Expect = 9e-18
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 38 DELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQV 87
E+ +K G +T++++++++WWK + R G+ P+ YV K+ G V
Sbjct: 4 REVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELV 53
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 81
Score = 71.3 bits (175), Expect = 1e-17
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVID--TSDQNWWKGKCMGRVGYFPSNYVIKVQPG 81
VLY++ + ++ EL L +TV D +W G+ + G P Y+ + G
Sbjct: 21 RVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNSG 77
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 70.8 bits (174), Expect = 1e-17
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVI---DTSDQNWWKGKCMGRVGYFPSNYVIKVQPG 81
LY+++ + DEL G + ++ + D +W+G+ GR+G FPS V ++ G
Sbjct: 12 KALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSG 69
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 70.7 bits (174), Expect = 1e-17
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYVIKV 78
L+ + + DEL + G + +I +T + WWKG+ G+ G FP N+ +++
Sbjct: 10 RTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI 63
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 70.8 bits (174), Expect = 1e-17
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYV 75
V++ +++++ DEL +K G VT+I D D WW+G+ GR G FP N+V
Sbjct: 11 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 61
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 70.8 bits (174), Expect = 1e-17
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
L ++ ++ + L+ +TV++ +NWW G+ G G+FP +YV + E
Sbjct: 14 QALCSWTAKKDNHLNFSKHDIITVLE-QQENWWFGEVHGGRGWFPKSYVKIIPGSE 68
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3,
SH3-containing adapter molecule 1, SCAM-1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 90
Score = 71.3 bits (175), Expect = 1e-17
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPGERP 84
V Y FK EL + G + +I ++NW++G+ GR G FP++YV +
Sbjct: 21 VAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREPRLR 80
Query: 85 LQVTH 89
L
Sbjct: 81 LCDDS 85
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 70.8 bits (174), Expect = 1e-17
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKVQPGE 82
V LY++ + +DEL + G + V +++WW G G+ GYFP+N+V +
Sbjct: 9 VVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASETLYQ 66
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 70.9 bits (174), Expect = 2e-17
Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGR-----VGYFPSNYVI 76
+ V + + +++L L PG + ++ + WW+G+ R G+FP+++V
Sbjct: 6 SGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65
Query: 77 KVQPGERP 84
+ P
Sbjct: 66 LLGPSSER 73
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 70.3 bits (173), Expect = 2e-17
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
++ F RH DEL+L+ + V ++ W++ M G G FP+ Y I+V
Sbjct: 6 HRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEV 60
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 70.0 bits (172), Expect = 2e-17
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYVIKVQPGERP 84
+ +NF E+ + G ++T++ D+NW++G+ G R G FP Y V +RP
Sbjct: 10 IAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITY---VDVIKRP 66
Query: 85 L 85
L
Sbjct: 67 L 67
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR
{Homo sapiens}
Length = 88
Score = 70.6 bits (173), Expect = 2e-17
Identities = 14/56 (25%), Positives = 21/56 (37%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
+ + L L+ G V V + W+G+ GR G FP +V P
Sbjct: 22 IQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQN 77
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 70.5 bits (173), Expect = 3e-17
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSD--QNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
LY+F+ + +L+ + G ++TVI +D +WW+GK G+ G FP+NYV + G
Sbjct: 21 TALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYV-TMNSGPSS 79
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 70.1 bits (172), Expect = 3e-17
Identities = 14/56 (25%), Positives = 19/56 (33%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
+ D L LK G + +I W G +VG F YV + G
Sbjct: 15 HTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSGP 70
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 69.5 bits (171), Expect = 3e-17
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQN-WWKGKCMGRVGYFPSNYV 75
+Y ++++ DE+ + PG +TVI D + W G+C G G FP++Y
Sbjct: 5 AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYC 53
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A
2kr3_A
Length = 65
Score = 69.7 bits (171), Expect = 3e-17
Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--------GRVGYFPSNYV 75
L + LY+++ + E+ +K G +T++++++++WWK + R G+ P+ YV
Sbjct: 2 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61
Query: 76 IKV 78
K+
Sbjct: 62 KKL 64
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 70.1 bits (172), Expect = 3e-17
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG---RVGYFPSNYVIKVQP 80
+Y+ ++ + DEL G + V DQ WW G G R G FP ++V +
Sbjct: 14 KTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSD 70
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein,
membrane, nuclear protein, phosphorylation,
polymorphism, transport, structural genomics; NMR {Homo
sapiens}
Length = 70
Score = 69.6 bits (171), Expect = 4e-17
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYV 75
+ +NF E+ + G ++T++ D+NW++G+ G R G FP YV
Sbjct: 11 IAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 61
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 69.6 bits (171), Expect = 4e-17
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRV-GYFPSNYVIKVQP 80
LY++K++ +DEL G + + WWKG R+ YFPSNYV +
Sbjct: 11 KALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISG 65
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 69.1 bits (170), Expect = 4e-17
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
+V Y++ + H DEL ++ G + + ++ W +G+ GR G FP N+V +++
Sbjct: 5 IVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKR 59
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 69.2 bits (170), Expect = 6e-17
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVG-YFPSNYVIKVQPGE 82
L+++K++ DEL + ++ + WW+G G+ +FPSNYV ++ E
Sbjct: 10 KALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNPE 66
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 68.7 bits (168), Expect = 6e-17
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
V + + + DEL L G +VTV++ WW+G G++G+FPSNYV
Sbjct: 5 FVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYV 53
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 72.4 bits (177), Expect = 8e-17
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
L++F + EL + G + V+D SD NWWKG C G+ G FP NYV V
Sbjct: 164 LFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNR 215
Score = 65.5 bits (159), Expect = 4e-14
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYVIKVQPGERPL 85
+ Y+FK+ DEL K G + V++ DQNW+K + G+ G+ P NY+
Sbjct: 4 IAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFG 63
Query: 86 QVT----HNLQIADGESGLSLLRD 105
++ + G L+R+
Sbjct: 64 KIPRAKAEEMLSKQRHDGAFLIRE 87
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 72
Score = 68.8 bits (169), Expect = 8e-17
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 29 LYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYV 75
LY K+ H EL G + S + W +G G+ G P NYV
Sbjct: 16 LYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYV 63
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 68.9 bits (169), Expect = 9e-17
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDT--SDQNWWKGKCM-GRVGYFPSNYVIKVQPGE 82
LY F S +EL+ + G + VI+ +D WWK K G+VG P NYV+ + G
Sbjct: 10 QTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGP 68
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic
protein NCK2; T-cell receptor, SH3 domain, immunology,
SH2 domain; NMR {Homo sapiens}
Length = 86
Score = 69.1 bits (169), Expect = 1e-16
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 16 KAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNY 74
K + + + +++ ++ ELD+K ++ ++D S WW+ + R GY PSNY
Sbjct: 24 KNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSK-TWWRVRNAANRTGYVPSNY 82
Query: 75 V 75
V
Sbjct: 83 V 83
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 68.0 bits (167), Expect = 1e-16
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSD--QNWWKGKCMGRVGYFPSNYV 75
V LY+F + +L + G +T++ SD +WW G+ GR G FP+NYV
Sbjct: 7 VALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 57
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 68.5 bits (168), Expect = 1e-16
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVID---TSDQNWWKGKCMGRVGYFPSNYV 75
LY+ +DEL G +T+++ + WWK GR G P+N +
Sbjct: 11 RALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRL 62
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 68.6 bits (168), Expect = 1e-16
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 19 RLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCM--GRVGYFPSNYV 75
R P + EL + G VT+++ +++W++ K G+ G + +
Sbjct: 13 RWAPGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGAL 72
Query: 76 IKVQPGE 82
+
Sbjct: 73 RERSGPS 79
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma
1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus}
PDB: 1ywp_A 1ywo_A
Length = 61
Score = 68.0 bits (167), Expect = 1e-16
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVG-YFPSNYV 75
L+++K++ DEL + ++ D WW+G G+ +FPSNYV
Sbjct: 7 KALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYV 56
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 67.8 bits (166), Expect = 2e-16
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-----MGRVGYFPSNYVI 76
+V L++FKSR +EL + G V +Q WW GY P NY+
Sbjct: 9 LGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLA 68
Query: 77 KVQ 79
+ +
Sbjct: 69 ERE 71
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 67.7 bits (166), Expect = 2e-16
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKVQPGE 82
Y+F +R++ EL + + ++D WWK + G G+ P+N + ++ E
Sbjct: 5 KSKYDFVARNSSELSVMKDDVLEILDDRR-QWWKVRNASGDSGFVPNNILDIMRTPE 60
Score = 25.3 bits (56), Expect = 2.4
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 94 ADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139
A S LS+++D ++ + D +RN G P L +
Sbjct: 12 ARNSSELSVMKDDVLEILDDR-RQWWKVRNASGDSGFVPNNILDIM 56
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 67.7 bits (166), Expect = 2e-16
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 22 PTNLFVV--LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG-----RVGYFPSNY 74
P F V + +KS + D+L+ + ++ V D W+ G+ G FP ++
Sbjct: 4 PEVPFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSF 63
Query: 75 V 75
V
Sbjct: 64 V 64
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 72.6 bits (177), Expect = 3e-16
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYV 75
V + F +L + G ++ ++ ++Q+WW+ + G G P+NYV
Sbjct: 150 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYV 200
Score = 68.7 bits (167), Expect = 5e-15
Identities = 11/53 (20%), Positives = 19/53 (35%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
+ +L +K G V V +K + G++G P Y+ E
Sbjct: 256 RVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAVSE 308
Score = 54.8 bits (131), Expect = 6e-10
Identities = 19/125 (15%), Positives = 33/125 (26%), Gaps = 16/125 (12%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQVTH 89
Y+ R ADE + Y + + + FP + R L
Sbjct: 78 YSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEAS 137
Query: 90 NLQI----------------ADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPL 133
L + E+ L + + + + RN G+ P
Sbjct: 138 LLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPA 197
Query: 134 KYLQE 138
Y+Q
Sbjct: 198 NYVQI 202
Score = 27.1 bits (59), Expect = 2.3
Identities = 1/21 (4%), Positives = 4/21 (19%)
Query: 55 DQNWWKGKCMGRVGYFPSNYV 75
+ G + +
Sbjct: 16 PRGSHMASMTGGQQMTTNGFD 36
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 67.8 bits (166), Expect = 3e-16
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQN-WWKGKCMGRVGYFPSNYVIKVQPGERPL 85
L ++ L K +T+ +N W+ G+ G+ G FP ++V + P
Sbjct: 14 RALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSDVPPP 73
Query: 86 QVTH 89
Q H
Sbjct: 74 QPVH 77
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 67.3 bits (165), Expect = 3e-16
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 23 TNLFVV-LYNFKSRHADELDLKPGYKVTVIDTSDQN---WWKGKCMGRVGYFPSNYV--I 76
N+ LY+ + DEL + G +TV++ Q WW GR G P N + +
Sbjct: 2 LNVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKIL 61
Query: 77 KVQPGERP 84
++P
Sbjct: 62 VGMYDKKP 69
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 66.8 bits (164), Expect = 3e-16
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKG--KCMGRVGYFPSNYV 75
V LY+F+ + +EL L G V + Q W + + G P +V
Sbjct: 5 VALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 55
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 67.3 bits (165), Expect = 3e-16
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKC-MGRVGYFPSNYVIKVQ 79
+ YNF +L G +T++ T D NW+K K +GR G P+NYV K +
Sbjct: 15 IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 69
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding
protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A
1neb_A 3i35_A
Length = 64
Score = 66.9 bits (164), Expect = 4e-16
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
+ +Y++ ++ DE+ + G + + D W G GR G P+NY+
Sbjct: 9 YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYI 60
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 66.6 bits (163), Expect = 5e-16
Identities = 14/56 (25%), Positives = 21/56 (37%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
+ + L L+ G V V + W+G+ GR G FP +V P
Sbjct: 7 IQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQN 62
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 67.1 bits (164), Expect = 6e-16
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 19 RLLPTNLFVVLYNFKSRHADELDLKPGYKVTVI----DTSDQNWWKGKCM--GRVGYFPS 72
R V+Y + ++ DEL+L PG + + ++ + W G + G G P
Sbjct: 12 RFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPE 71
Query: 73 NYVIKV 78
NY+ K
Sbjct: 72 NYITKA 77
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 66.2 bits (162), Expect = 7e-16
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 26 FVVLYNFK-SRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPGE 82
F Y+F S + EL LK G V + W K + + G+ P+ Y+ +
Sbjct: 5 FEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTR 64
Query: 83 RPLQV 87
+ V
Sbjct: 65 NTVPV 69
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN
structural genomics consortium, SGC; 2.00A {Homo
sapiens}
Length = 89
Score = 66.8 bits (163), Expect = 7e-16
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVID-----TSDQNWWKGKCM-GRVGYFPSNYV 75
++ ++++++ +EL L+ G +V V+ + D+ WW G+ GRVG FPSNYV
Sbjct: 31 VWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYV 87
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 65.7 bits (161), Expect = 9e-16
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
Y++ + +EL K+ I+ D +WW G+ G G FPSNYV
Sbjct: 4 TAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 67.9 bits (165), Expect = 2e-15
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYV 75
V + F +L + G ++ ++ ++Q+WW+ + G G P+NYV
Sbjct: 121 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYV 171
Score = 44.4 bits (104), Expect = 2e-06
Identities = 19/125 (15%), Positives = 33/125 (26%), Gaps = 16/125 (12%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQVTH 89
Y+ R ADE + Y + + + FP + R L
Sbjct: 49 YSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEAS 108
Query: 90 NLQ----------------IADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPL 133
L + E+ L + + + + RN G+ P
Sbjct: 109 LLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPA 168
Query: 134 KYLQE 138
Y+Q
Sbjct: 169 NYVQI 173
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 65.1 bits (159), Expect = 3e-15
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGK-CMGRVGYFPSNYV 75
V+Y++K+ DEL ++ + VI+ D ++W K + +G+VGY P Y+
Sbjct: 17 KVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYL 67
Score = 25.4 bits (56), Expect = 3.4
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 94 ADGESGLSLLRDQIVIQIG-DEVDGMVMIRNGENRQGVCPLKYLQEV 139
A L++ +++ I +++ V RN + G P KYLQ
Sbjct: 24 ASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFP 70
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 69.3 bits (168), Expect = 4e-15
Identities = 14/57 (24%), Positives = 21/57 (36%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
+ + L L+ G V V + W+G+ GR G FP +V P
Sbjct: 242 AIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQN 298
Score = 60.8 bits (146), Expect = 4e-12
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 11 HDLTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGY 69
LY+F A++L K G + +I+ ++ WW + GRVG
Sbjct: 113 VSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGM 172
Query: 70 FPSNYV 75
P YV
Sbjct: 173 IPVPYV 178
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 69.2 bits (168), Expect = 4e-15
Identities = 13/69 (18%), Positives = 23/69 (33%)
Query: 14 TQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSN 73
+ + L L+ G V V + W+G+C G+ G+FP
Sbjct: 230 LPNLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFT 289
Query: 74 YVIKVQPGE 82
+V +
Sbjct: 290 HVRLLDQQN 298
Score = 61.9 bits (149), Expect = 2e-12
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 1 MNLIPPLITLHDLTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWK 60
LI P+ + R L++F ++L K G + + D ++ WW
Sbjct: 112 TTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWN 171
Query: 61 GK-CMGRVGYFPSNYVIKVQP 80
+ G+ G P YV K +P
Sbjct: 172 AEDSEGKRGMIPVPYVEKYRP 192
Score = 25.3 bits (54), Expect = 7.5
Identities = 7/46 (15%), Positives = 19/46 (41%)
Query: 94 ADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139
+ E L + I+ + + E ++G+ P+ Y+++
Sbjct: 145 GNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 190
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 69.3 bits (168), Expect = 4e-15
Identities = 19/84 (22%), Positives = 39/84 (46%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQ 86
L++F EL+ K G + ++ +++W +G G G FP ++V ++
Sbjct: 178 EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEEDD 237
Query: 87 VTHNLQIADGESGLSLLRDQIVIQ 110
T+ L+ E +S ++D V +
Sbjct: 238 PTNWLRCYYYEDTISTIKDIAVEE 261
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 63.8 bits (156), Expect = 6e-15
Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVI-DTSDQNWWKGK-CMGRVGYFPSNYV 75
V +Y+F+ + + G ++++ + W + + G GY P++Y+
Sbjct: 11 VAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYL 61
Score = 27.2 bits (61), Expect = 0.56
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 94 ADGESGLSLLRDQIVIQIG-DEVDGMVMIRNGENRQGVCPLKYLQEV 139
E +S+ + + + D+ DG +R E +G P YL+
Sbjct: 18 GSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVT 64
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 63.0 bits (154), Expect = 1e-14
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGKC-MGRVGYFPSNYV 75
LY++ + DEL K G ++T + D Q W +G+ G++G +P+NYV
Sbjct: 7 RALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYV 57
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3,
signaling protein; NMR {Homo sapiens}
Length = 67
Score = 63.1 bits (154), Expect = 1e-14
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 28 VLYNFKSRHAD--ELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
V+ D L L+ G V V + W+G+C G+ G+FP +V
Sbjct: 11 VIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHV 60
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 63.2 bits (154), Expect = 1e-14
Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM----GRVGYFPSNYVIK 77
+++V + +++ + + G + V++ + WW + + G+ PSNY+ K
Sbjct: 9 LKDVYVSIADYEG-DEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEK 67
Query: 78 VQPGE 82
G
Sbjct: 68 KNSGP 72
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 62.8 bits (153), Expect = 2e-14
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
+ F ++ ADE+ L+ V V+ D W G+ + G G+FP ++ +
Sbjct: 21 EITKAFFAKQADEVTLQQADVVLVLQQED-GWLYGERLRDGETGWFPEDFARFI 73
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel
beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP:
b.34.2.1 PDB: 1n5z_A
Length = 92
Score = 63.3 bits (154), Expect = 2e-14
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 22 PTNLFVV--LYNFKSRHAD-ELDLKPGYKVTVIDTSDQ-----NWWKGKCM-GRVGYFPS 72
P+ L LY+F + + E+ LK G + ++ D +WWK + G +GY P
Sbjct: 11 PSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPY 70
Query: 73 NYVIKVQPGER 83
NY+ ++ ++
Sbjct: 71 NYIEIIKRRKK 81
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 61.9 bits (151), Expect = 3e-14
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 25 LFVVLYNFK-SRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
+F Y+F S EL LK G + + W GK + + G+ P+ Y+
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYM 55
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 66.1 bits (160), Expect = 3e-14
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 1 MNLIPPLITLHDLTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWK 60
LI P+ + R L++F ++L K G + + D ++ WW
Sbjct: 114 TTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWN 173
Query: 61 GKCM-GRVGYFPSNYVIKVQPGE 82
+ G+ G P YV K +P
Sbjct: 174 AEDSEGKRGMIPVPYVEKYRPAS 196
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 62.0 bits (151), Expect = 5e-14
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 26 FVVLYNFKSRHA-------DELDLKPGYKVTVIDTSD-QNWWKGKCMGRVGYFPSNYVIK 77
V LY++ R + EL G +TV D ++ G+ G+ G PSN++ +
Sbjct: 10 MVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEE 69
Query: 78 VQP 80
V
Sbjct: 70 VSG 72
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 62.1 bits (151), Expect = 6e-14
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQN----WWKGKCMGR-VGYFPSNYV 75
Y+F + +E+ + G + + Q W G+ G P+NYV
Sbjct: 21 RAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYV 74
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 65.9 bits (161), Expect = 9e-14
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPGE 82
FV LY+++SR +L K G ++ +++ ++ +WW + G+ GY PSNYV +
Sbjct: 4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQ 63
Query: 83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQG 129
+ + E LL + + G ++R E +G
Sbjct: 64 AEEWYFGKITRRESE---RLLLNA------ENPRGTFLVRESETTKG 101
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 61.5 bits (149), Expect = 1e-13
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 14 TQKAHRLLPTNLFVVLYNFKSRHA------DELDLKPGYKVTVIDTSDQN-WWKGKCM-G 65
T K +L V Y++ EL L G + V D++ +++G+ + G
Sbjct: 8 TSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDG 67
Query: 66 RVGYFPSNYVIKVQPGERPLQVTHN 90
+ G PSN+V VQ E L T
Sbjct: 68 QRGLVPSNFVDFVQDNESRLASTSG 92
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 61.4 bits (149), Expect = 1e-13
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 11 HDLTQKAHRLLPTNLFVV--LYNFKSRH-ADELDLKPGYKVTVIDTSDQNWWKGKCMG-- 65
H + L+P V L +F + H L+++ G +TV++ WKG
Sbjct: 4 HHHHHHSSGLVPRGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQ 63
Query: 66 ----RVGYFPSNYV 75
R+GYFP V
Sbjct: 64 RGTDRIGYFPPGIV 77
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane;
2.05A {Saccharomyces cerevisiae}
Length = 70
Score = 60.8 bits (148), Expect = 1e-13
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 22 PTNLFVV--LYNFKSRHAD--ELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVI 76
++ LY + + D E+ + + V D WWK + G G PSNYV
Sbjct: 2 DNFIYKAKALYPYDADDDDAYEISFEQNEILQVSDIEG-RWWKARRANGETGIIPSNYVQ 60
Query: 77 KVQPGE 82
+ E
Sbjct: 61 LIDGPE 66
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 60.5 bits (147), Expect = 2e-13
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 22 PTNLFVV--LYNFKSRHAD-ELDLKPGYKVTVIDTSDQ-----NWWKGK-CMGRVGYFPS 72
P+ L LY+F + + E+ LK G + ++ D +WWK + G +GY P
Sbjct: 11 PSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPY 70
Query: 73 NYVIKVQPGE 82
NY+ ++ +
Sbjct: 71 NYIEIIKRRK 80
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 59.5 bits (145), Expect = 3e-13
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWW---KGKCMGRVGYFPSNYV 75
VLY + + DE+ + PG K++++ + W G G P+ Y+
Sbjct: 6 VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYI 56
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 64.0 bits (154), Expect = 5e-13
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGKCM-GRVGYFPSNYVIKVQ 79
LY+++ + DEL K G ++T ++ D Q W KG+ G+VG +P+NYV +Q
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAIQ 486
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 60.5 bits (146), Expect = 5e-13
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM---GRVGYFPSNYV 75
V +YNF+ A +L L+ G V + +T +W++G + G FP +++
Sbjct: 63 VAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFI 113
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 77
Score = 58.9 bits (143), Expect = 6e-13
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 28 VLYNFK-SRHADELDLKPGYKVTVID-TSDQNWWKGK-CMGRVGYFPSNYV-IKVQPGER 83
V+Y+F +EL + G +TV + W +GK G G P++YV I G+
Sbjct: 14 VMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDGKD 73
Query: 84 PLQ 86
P
Sbjct: 74 PFS 76
Score = 27.7 bits (62), Expect = 0.49
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 92 QIADGESGLSLLRDQIVIQIGDEVD-GMVMIRNGENRQGVCPLKYLQEV 139
+ + E L++ +I+ V G + +N + QG+ P Y++ +
Sbjct: 21 EPGNNE--LTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEIL 67
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 58.5 bits (142), Expect = 7e-13
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 27 VVLYNFKSRHAD-ELDLKPGYKVTVIDTSDQ-----NWWKGKCM-GRVGYFPSNYV 75
LY+F + + E+ LK G + ++ D +WWK + G +GY P NY+
Sbjct: 11 RALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 66
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 58.5 bits (142), Expect = 8e-13
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 3/53 (5%)
Query: 26 FVVLYNF-KSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
+ + K DE+ G V + + W + G + V
Sbjct: 10 VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLV 62
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor
complex, DOWN-regulated kinase, ordered activation
loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A*
2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 62.8 bits (153), Expect = 1e-12
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQ 79
+ V LY++++ H ++L + G ++ V++ S + WWK + + + GY PSNYV +V
Sbjct: 7 IRIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 65
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 62.6 bits (152), Expect = 1e-12
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQ 79
FV LY+++SR +L K G ++ +++ ++ +WW + G+ GY PSNYV
Sbjct: 84 GVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 143
Query: 80 PGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQG 129
+ + + E L + G ++R E +G
Sbjct: 144 SIQAEEWYFGKITRRESERLLLNAENP---------RGTFLVRESETTKG 184
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 62.1 bits (151), Expect = 2e-12
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWK-GKCMGRVGYFPSNYVIKVQP 80
NLFV LY+F + + L + G K+ V+ + W + G+ PSNY+ V
Sbjct: 42 DPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNS 101
Query: 81 GER 83
E+
Sbjct: 102 LEK 104
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 58.6 bits (141), Expect = 2e-12
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 15/68 (22%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVI-----DTSDQNWWKG----------KCMGRVGYFP 71
+++ + DEL LK G V VI + D+ W G + G FP
Sbjct: 48 QAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFP 107
Query: 72 SNYVIKVQ 79
N+ +VQ
Sbjct: 108 ENFTERVQ 115
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 56.6 bits (137), Expect = 5e-12
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 25 LFVVLYNFKSR-------HADELDLKPGYKVTVI-DTSDQNWWKGKCMGRVGYFPSNYVI 76
+ + ++ L L+ G V V DQ ++ G+ G G P++ +
Sbjct: 9 IMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLD 68
Query: 77 KVQP 80
+
Sbjct: 69 HMSL 72
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 60.1 bits (146), Expect = 1e-11
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCM-GRVGYFPSNYVIKVQ 79
+ YNF +L G +T++ + D NW+K K GR G P+NYV K +
Sbjct: 10 SGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 69
Query: 80 PGERP 84
+
Sbjct: 70 GVKAG 74
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural
genomics/proteomics initiative RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 92
Score = 56.1 bits (135), Expect = 1e-11
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSD----QNWWKGKCMGRVGYFPSNYVIK 77
P LF NF + ++ L G V VI D QN W G+ S+++
Sbjct: 16 PEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKP 75
Query: 78 VQPGERPLQVT 88
P +
Sbjct: 76 YNPRRSHSDAS 86
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 57.0 bits (137), Expect = 3e-11
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 12/115 (10%)
Query: 21 LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKV 78
L NL + L++++ H +L + G ++ +++ WWK + G+ G+ P N+V K
Sbjct: 10 LQDNLVIALHSYEPSHDGDLGFEKGEQLRILE-QSGEWWKAQSLTTGQEGFIPFNFVAKA 68
Query: 79 QPGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPL 133
E NL D E L G +IR E+ G L
Sbjct: 69 NSLEPEPWFFKNLSRKDAERQL---------LAPGNTHGSFLIRESESTAGSFSL 114
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 56.9 bits (137), Expect = 1e-10
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQV 87
L++ + EL K G + V+D +++ WW G+ G+FP+++V + P
Sbjct: 35 ALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADD 94
Query: 88 THNL--------QIADGESGLSLLRDQIV 108
L A+ +S +R ++
Sbjct: 95 DAPLAGNSGAEDGGAEAQSSKDQMRTNVI 123
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 53.1 bits (128), Expect = 1e-10
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 28 VLYNF-KSRHADELDLKPGYKVTVIDTSDQN-WWKGKCM--GRVGYFPSNYV 75
++ + L G +T++ +++ W G+ G+FPS+Y
Sbjct: 12 TIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYT 63
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 53.1 bits (127), Expect = 2e-10
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 17/72 (23%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQN---------------WWKGKCM--GRVG 68
+ LY F+ ++L+L PG + V + Q W G + G
Sbjct: 14 YRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRG 73
Query: 69 YFPSNYVIKVQP 80
FP YV + P
Sbjct: 74 DFPGTYVEFLGP 85
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 55.5 bits (134), Expect = 2e-10
Identities = 24/80 (30%), Positives = 41/80 (51%)
Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQVT 88
+Y++ +++ DEL G + V++ D +WWKG+ G+VG FPSNYV + Q
Sbjct: 8 MYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPSQQWC 67
Query: 89 HNLQIADGESGLSLLRDQIV 108
+L + D + R +
Sbjct: 68 SDLHLLDMLTPTERKRQGYI 87
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain,
SH2 domain, SRC homology 3, RAS signaling pathway,
proto- oncogene, phosphorylation; 1.5A {Homo sapiens}
PDB: 2j06_A
Length = 65
Score = 51.7 bits (124), Expect = 4e-10
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 3/53 (5%)
Query: 26 FVVLYNF-KSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
+ + K DE+ G V + + W + G + V
Sbjct: 8 VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLV 60
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 50.5 bits (121), Expect = 1e-09
Identities = 10/42 (23%), Positives = 27/42 (64%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC 63
L + LY+++ + E+ +K G +T++++++++WWK +
Sbjct: 20 GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV 61
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein
1; IRTKS-SH3, espfu, complex structure, protein
binding; NMR {Homo sapiens}
Length = 67
Score = 50.4 bits (121), Expect = 1e-09
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 28 VLYNFK-SRHADELDLKPGYKVTVIDTSDQN-WWKGKCM--GRVGYFPSNYV 75
++ + L G +T++ +++ W G+ G+FPS+Y
Sbjct: 11 TIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYT 62
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein
complex, DOCK2, ELMO1, SH3 domain, PH domain bundle,
proline-rich sequence, cytoskeleton; 2.10A {Homo
sapiens}
Length = 184
Score = 52.4 bits (125), Expect = 2e-09
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKG---KCMGRVGYFPSNYV-IKVQPGE 82
V +YNF+ A +L L+ G V + +T +W++G K G FP +++ IK E
Sbjct: 21 VAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIHIKEVTVE 79
Query: 83 RPLQVTHNLQIAD 95
+ + +
Sbjct: 80 KRRNTENIIPAEI 92
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 49.6 bits (119), Expect = 2e-09
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 29 LYNFKS-RHADELDLKPGYKVTVIDTS-DQNWWKGKCM--GRVGYFPSNYV 75
+++ + ++ L K G +T++ W G+ G+FP +Y
Sbjct: 13 IFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYT 63
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 53.3 bits (127), Expect = 3e-09
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
+ + +Y + R ADE+ ++PG + V + KG GR G +PS V
Sbjct: 441 NAHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKV 496
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 48.5 bits (115), Expect = 8e-09
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 21 LPTNLFVVLYN----FKSRHADELDLKPGYKVTVIDT-SDQNWWKGKCM--GRVGYFPSN 73
LP Y L L PG V + ++ NWW+G+ VG+FP N
Sbjct: 12 LPKMEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCN 71
Query: 74 YV 75
V
Sbjct: 72 RV 73
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex,
GRB2,VAV, signaling protein/signaling protein complex;
1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 46.5 bits (110), Expect = 4e-08
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 38 DELDLKPGYKVTVIDTS-DQNWWKGKCM--GRVGYFPSNYV 75
L L PG V + + NWW+G+ VG+FP N V
Sbjct: 25 PFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 65
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 46.5 bits (110), Expect = 8e-08
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Query: 29 LYNFKSRHADELDLKPGYKVTV---IDTSDQNWWKG--------KCMGRVGYFPSNYVIK 77
L ++ + L + G V V + + +W G R+GYFPS+ V +
Sbjct: 28 LQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVRE 87
Query: 78 VQ-PGERPLQV 87
Q + V
Sbjct: 88 DQTLKPGKVDV 98
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 48.2 bits (113), Expect = 9e-08
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 15/67 (22%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTS-----DQNWWKG----------KCMGRVGYFP 71
+++ + DEL LK G V VI D+ W G K G FP
Sbjct: 146 QAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFP 205
Query: 72 SNYVIKV 78
N+ +V
Sbjct: 206 ENFTERV 212
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3
domain, peptide complex, alternative splicing, disease
mutation, HOST-virus interaction, phosphoprotein,
polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A
1pnj_A 2pni_A 1pks_A 1pkt_A
Length = 83
Score = 43.9 bits (103), Expect = 5e-07
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 17/72 (23%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQN---------------WWKGKCM--GRVG 68
+ LY++K +++DL G +TV S W G G G
Sbjct: 8 YRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERG 67
Query: 69 YFPSNYVIKVQP 80
FP YV +
Sbjct: 68 DFPGTYVEYIGR 79
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo
sapiens} PDB: 2gto_A
Length = 96
Score = 37.0 bits (85), Expect = 2e-04
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSD--QNWWKGKCM-GRVGYFPSNYV 75
+L + K +EL K G ++ +I +D + W G+ G GY + V
Sbjct: 27 VIHLAKACCDVKGG-KNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAV 82
>1u3o_A Huntingtin-associated protein-interacting protein; SH3,
CIS-proline,, signaling protein; NMR {Rattus
norvegicus}
Length = 82
Score = 35.0 bits (80), Expect = 0.001
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVID--TSDQNWWKGK----CMGRVGYFPSNYV 75
VVL +F + H+ EL ++ G V +++ + W + + G PS+ +
Sbjct: 21 VVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL 75
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606,
structural genomics, PSI-2, protein structure
initiative; NMR {Clostridium perfringens}
Length = 74
Score = 32.3 bits (74), Expect = 0.009
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 42 LKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG 81
L+ KV +I D W++ + G+VGY +Y+ V G
Sbjct: 27 LRNNDKVEIIKEVD-GWYEIRFNGKVGYASKSYITIVNEG 65
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; NMR {Clostridium perfringens} PDB:
2kyb_A
Length = 76
Score = 32.3 bits (74), Expect = 0.009
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 42 LKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
L KVT++ ++K + G GY Y+ ++
Sbjct: 29 LSGNTKVTIVGEEG-AFYKIEYKGSHGYVAKEYIKDIKD 66
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 33.4 bits (77), Expect = 0.012
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQN---WWKGKCMGRVGYFPSNYV---IKVQPGE 82
L++++ ++ DEL +K G +T+I D++ WW + + GY P N + +++P +
Sbjct: 176 LWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRIKPRQ 235
Query: 83 RPL 85
R L
Sbjct: 236 RSL 238
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3
domain, structural genomics, protein structure
initiative; NMR {Bacillus thuringiensis
serovarkonkukian}
Length = 70
Score = 31.1 bits (71), Expect = 0.022
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 42 LKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
L G KV VI + W K G+ GY + Y+ K++
Sbjct: 28 LPQGQKVQVISENS-GWSKINYNGQTGYIGTRYLSKLE 64
>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 74
Score = 29.4 bits (65), Expect = 0.12
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWW------KGKCMGRVGYFPSN 73
+ V+ ++ + +E+ + G V V+ + QN G+ P +
Sbjct: 6 SGSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGS 63
>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling
protein; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 102
Score = 28.1 bits (62), Expect = 0.48
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 39 ELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVI 76
+L +KPG + VI T+D + G+ GY +Y+
Sbjct: 57 DLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYLA 95
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 28.2 bits (62), Expect = 0.75
Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 16/67 (23%)
Query: 24 NLFV-VLYNFKSRHADELDLKPGYKVTVIDTSDQN---------WWKGKCMGR------V 67
+ ++ + + L G V+DT W MGR
Sbjct: 4 SFYIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQER 63
Query: 68 GYFPSNY 74
G P+
Sbjct: 64 GIIPNQS 70
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains,
cyclic nucleotide protein transferase, PKG; HET: CMP;
2.50A {Bos taurus}
Length = 299
Score = 28.0 bits (62), Expect = 0.94
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 1/76 (1%)
Query: 50 VIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQVTHNLQIADGESGLSLLRDQIVI 109
ID + ++ V P + L ++AD + +I
Sbjct: 134 AIDRQCFQTIMMRTGLIKHTEYMEFLKSV-PTFQSLPEEILSKLADVLEETHYENGEYII 192
Query: 110 QIGDEVDGMVMIRNGE 125
+ G D +I G+
Sbjct: 193 RQGARGDTFFIISKGK 208
>3m1u_A Putative gamma-D-glutamyl-L-diamino acid endopept; structural
genomics, joint center for structural genomics; HET: MSE
MES; 1.75A {Desulfovibrio vulgaris}
Length = 434
Score = 28.2 bits (62), Expect = 1.1
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 19 RLLPTNLFVVLYNFKSRHADELD------LKPGYKVTVIDTS-DQNWWKGKCMGRVGYFP 71
R +PT + ++ D + G V V + D+ W + G+ P
Sbjct: 127 REVPTLRPMFTAPTRAGQGYPFDMFQRTAVWMGTPVFVGHATADRAWLYVETAFAAGWMP 186
Query: 72 SNYVIKVQPGE 82
+ V +V
Sbjct: 187 AADVARVDDAF 197
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 1.3
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 15/63 (23%)
Query: 72 SNY-VIKVQPGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMI--RNGENRQ 128
SNY +I + PG ++A S +L +V ++G +V I N EN+Q
Sbjct: 1805 SNYGMIAINPG----------RVAASFSQEAL--QYVVERVGKRTGWLVEIVNYNVENQQ 1852
Query: 129 GVC 131
V
Sbjct: 1853 YVA 1855
Score = 26.6 bits (58), Expect = 4.2
Identities = 30/123 (24%), Positives = 42/123 (34%), Gaps = 38/123 (30%)
Query: 11 H-DLTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRV-- 67
H L A L+ +L +F ++ D++ + V DT D G + RV
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAK-----DIQ----IPVYDTFD-----GSDL-RVLS 472
Query: 68 GYFPSNYV--IKVQP----GERPLQVTHNLQIAD----GESGLSLLRDQI-------VIQ 110
G V I P + TH I D G SGL +L + VI
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATH---ILDFGPGGASGLGVLTHRNKDGTGVRVIV 529
Query: 111 IGD 113
G
Sbjct: 530 AGT 532
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 27.4 bits (61), Expect = 1.8
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 39 ELDLKPGYKVTVIDTSDQNWW------KGKCMGRVGYFPSNY 74
L + G + VID D+ WW +G+ PS
Sbjct: 22 ALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKR 63
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 27.0 bits (60), Expect = 2.4
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 40 LDLKPGYKVTVIDTSDQNWWKGK------CMGRVGYFPSN 73
L K G + V + SD WW+ + ++G PS
Sbjct: 27 LPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSK 66
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: ATP;
2.20A {Chlorobium tepidum}
Length = 245
Score = 26.8 bits (60), Expect = 2.4
Identities = 9/75 (12%), Positives = 23/75 (30%), Gaps = 21/75 (28%)
Query: 1 MNLIPPLITLHDLTQKAHRL-----------LPTNLFVV--------LYNFKSRHADEL- 40
++ L D++ + RL + +L ++ + N + +L
Sbjct: 53 LSGNTHSQDLADISNASDRLDKSLLDTMVQHISPSLDLIPSPATFEKIVNIEPERVSDLI 112
Query: 41 -DLKPGYKVTVIDTS 54
Y ++D
Sbjct: 113 HIAASFYDYIIVDFG 127
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199,
PSI-2, PR structure initiative 2; 1.86A {Agrobacterium
tumefaciens str}
Length = 317
Score = 26.4 bits (59), Expect = 3.9
Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 12/55 (21%)
Query: 8 ITLHDLTQKAHRLL---PTNLFV------VLYNFKSRHADELDLKPGYKVTVIDT 53
T ++ + L + V V+ ++ L P V D
Sbjct: 199 ETAENVRDWPNILRKAGLSGGVVTRGASEVVA---FNGTEKAILHPPLIREVKDV 250
>2fv7_A Ribokinase; structural genomics, structural genomics consort
transferase; HET: ADP; 2.10A {Homo sapiens} SCOP:
c.72.1.1
Length = 331
Score = 26.0 bits (58), Expect = 4.3
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 32 FKSRHADELDLKPGYKVTVIDT 53
S+ E P KV +DT
Sbjct: 252 VLSQTEPEPKHIPTEKVKAVDT 273
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure
initiative, modified lysin, structural genomics; HET:
BGC; 2.45A {Clostridium perfringens}
Length = 328
Score = 26.0 bits (58), Expect = 4.9
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 13/57 (22%)
Query: 6 PLITLHDLTQKAHRLL---PTNLFV------VLYNFKSRHADELDLKPGYKVTVIDT 53
P+ DL + ++ L +F+ + YN +V V +
Sbjct: 200 PITDTDDLIKASNYFLGLGIKKVFISLDADGIFYN----DGVSCGKIKATEVDVKNV 252
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding,
transferase; HET: RIB ADP; 1.84A {Escherichia coli}
SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*
Length = 309
Score = 25.5 bits (57), Expect = 5.9
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 36 HADELDLKPGYKVTVIDT 53
E PG++V +DT
Sbjct: 233 VNGEGQRVPGFRVQAVDT 250
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A
1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 25.6 bits (55), Expect = 6.3
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 50 VIDTSDQNWWKGKCMG---RVGYFPS 72
V + + +WW G+ + +G+ PS
Sbjct: 72 VKEKFNNDWWIGRLVKEGCEIGFIPS 97
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc
initiative, PSI, joint center for structural genomics,
TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1
Length = 311
Score = 25.5 bits (57), Expect = 6.4
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 37 ADELDLKPGYKVTVIDT 53
+E P +KV +DT
Sbjct: 237 KNEKKHFPTFKVKAVDT 253
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB
tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A
{Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Length = 416
Score = 25.9 bits (56), Expect = 6.7
Identities = 12/57 (21%), Positives = 23/57 (40%)
Query: 69 YFPSNYVIKVQPGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGE 125
I+ P + L+V+ L++ D + +I GD D ++ +GE
Sbjct: 262 RKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGE 318
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 25.6 bits (56), Expect = 7.3
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 31 NFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPS 72
FK +H D++D+ I + + K G Y P
Sbjct: 944 QFKHQHGDKVDIFE------IPETGEYSVKLLK-GATLYIPK 978
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase,
structural genomics, joint center for structural
genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 296
Score = 25.2 bits (56), Expect = 7.5
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 35 RHADELDLKPGYKVTVIDT 53
+ + KV V DT
Sbjct: 224 FTPGVVSFQETPKVPVADT 242
>3cnv_A Putative GNTR-family transcriptional regulator; structural
genomics, bordet bronchiseptica, PSI-2, protein
structure initiative; HET: MSE FLC; 2.00A {Bordetella
bronchiseptica RB50} SCOP: d.190.1.2
Length = 162
Score = 24.9 bits (55), Expect = 7.9
Identities = 6/41 (14%), Positives = 19/41 (46%)
Query: 64 MGRVGYFPSNYVIKVQPGERPLQVTHNLQIADGESGLSLLR 104
G + +++ + P ++ L++ GE+ +++ R
Sbjct: 12 EEGEGGRAESRILECRRLRAPAEIARALELRAGETVVTIRR 52
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}
Length = 304
Score = 25.1 bits (56), Expect = 7.9
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 37 ADELDLKPGYKVTVIDT 53
++ YKV IDT
Sbjct: 233 KNQSQHIEAYKVNAIDT 249
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose
metabolic process,ATP ribokinase, PFKB
family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A
{Klebsiella pneumoniae subsp} PDB: 3i3y_A*
Length = 299
Score = 25.2 bits (56), Expect = 8.6
Identities = 3/18 (16%), Positives = 5/18 (27%)
Query: 36 HADELDLKPGYKVTVIDT 53
+ P +DT
Sbjct: 212 QEGQRQFCPAVPAEALDT 229
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase,
transferase; HET: RIB ADP; 1.98A {Mycobacterium
tuberculosis} PDB: 3go7_A*
Length = 310
Score = 25.2 bits (56), Expect = 8.7
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 36 HADELDLKPGYKVTVIDT 53
AD + P VT +DT
Sbjct: 226 GADGVFEVPAPTVTPVDT 243
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A
3kso_A 3kss_A
Length = 1054
Score = 25.2 bits (56), Expect = 8.9
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 67 VGYFPS-----NYVIKVQPGERPLQVTHNLQIADGESGLSLLRDQIVIQ--IGDEVDGMV 119
GY + + V+K P+ + +A + G +R I G+ G+V
Sbjct: 241 SGYLQTLDDFNHIVLKASENGVPVYLR---DVAKVQIG-PEMRRGIAELNGEGEVAGGVV 296
Query: 120 MIRNGENRQGV 130
++R+G+N + V
Sbjct: 297 ILRSGKNAREV 307
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH
oxidoreductase-oxidoreductase inhibitor complex; HET:
FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Length = 352
Score = 25.2 bits (56), Expect = 9.3
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 6 PLITLHDLTQKAHRLLPTNLF 26
PL+ L D A + L +
Sbjct: 1 PLVCLADFKAHAQKQLSKTSW 21
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase,
denitrification, electron transport, periplasmic; HET:
HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2
b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A*
1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Length = 567
Score = 25.1 bits (55), Expect = 9.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 41 DLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVI 76
++K G + I+TS W+ K Y+P YVI
Sbjct: 235 EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVI 270
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone;
phosphotransferase, transferase, kinase, sugar
transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB:
1vrv_A* 2few_B*
Length = 125
Score = 24.5 bits (53), Expect = 9.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 8 ITLHDLTQKAHRLLPTNLFVVLYNF 32
IT DLT++A R +P + L NF
Sbjct: 64 ITHRDLTERAMRQVPQAQHISLTNF 88
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide
binding domain, evolution, PKA signaling, transfer; HET:
CMP; 2.21A {Saccharomyces cerevisiae}
Length = 246
Score = 25.2 bits (55), Expect = 9.8
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 92 QIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGE 125
++AD + +I+ GD+ + +I G
Sbjct: 143 KLADALDTKIYQPGETIIREGDQGENFYLIEYGA 176
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.141 0.429
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,164,288
Number of extensions: 121497
Number of successful extensions: 733
Number of sequences better than 10.0: 1
Number of HSP's gapped: 591
Number of HSP's successfully gapped: 245
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.7 bits)