BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6451
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DBC|A Chain A, Solution Structure Of The Thioredoxin-Like Domain Of
Phosducin-Like Protein 2(Pdcl2)
Length = 135
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212
+V+H Y+ C ++++H+ L +K ET+F+K V E +PT+ + K+
Sbjct: 33 VVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSC---IEHYHDNCLPTIFVYKN 89
Query: 213 SVTKDYIVGFTELGNCADFSTEMLEWRIAQAGVID 247
+ +G E G + E LEW++++ G I
Sbjct: 90 GQIEGKFIGIIECGG-INLKLEELEWKLSEVGAIQ 123
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 83 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIK 116
+V+H Y+ C ++++H+ L +K ET+F+K
Sbjct: 33 VVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVK 66
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 143 FFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIK 202
F +L K++ +V+ FY CK++ H+ L + + + RF+K +V+ +P + + +
Sbjct: 23 FRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVT 82
Query: 203 VIPTLTLVKDSVTKDYIVG 221
+PT L KD I+G
Sbjct: 83 AMPTFVLGKDGQLIGKIIG 101
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 73 FFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP 123
F +L K++ +V+ FY CK++ H+ L + + + RF+K +V+ +P
Sbjct: 23 FRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESP 73
>pdb|3EVI|A Chain A, Crystal Structure Of The Thioredoxin-Fold Domain Of Human
Phosducin- Like Protein 2
pdb|3EVI|B Chain B, Crystal Structure Of The Thioredoxin-Fold Domain Of Human
Phosducin- Like Protein 2
Length = 118
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212
+++H Y+ C ++++H+ L +K ET+F+K V + +PT+ + K+
Sbjct: 26 VIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC---IQHYHDNCLPTIFVYKN 82
Query: 213 SVTKDYIVGFTELGNCADFSTEMLEWRIAQAGVID 247
+ +G E G + E LEW++A+ G I
Sbjct: 83 GQIEAKFIGIIECGG-INLKLEELEWKLAEVGAIQ 116
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 83 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIK 116
+++H Y+ C ++++H+ L +K ET+F+K
Sbjct: 26 VIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVK 59
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212
+VVHF+ + C ++E M L K+ + F+KL E P ++E+ I +PT K+
Sbjct: 41 LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKN 100
Query: 213 SVTKDYIVG 221
S D + G
Sbjct: 101 SQKIDRLDG 109
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 83 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP 123
+VVHF+ + C ++E M L K+ + F+KL E P
Sbjct: 41 LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVP 81
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212
+VVHF+ + C ++E M L K+ + F+KL E P ++E+ I +PT K+
Sbjct: 35 LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKN 94
Query: 213 SVTKDYIVG 221
S D + G
Sbjct: 95 SQKIDRLDG 103
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 83 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP 123
+VVHF+ + C ++E M L K+ + F+KL E P
Sbjct: 35 LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVP 75
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 139 DEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTE 197
DEK F +P +V F+ C+++ ++ L + H + +K+NV+ P L
Sbjct: 39 DEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAA 98
Query: 198 RLRIKVIPTLTLVKDSVTKDYIVGFT 223
R ++ +PTL L + VG +
Sbjct: 99 RYGVRSVPTLVLFRRGAPVATWVGAS 124
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 69 DEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTG 127
DEK F +P +V F+ C+++ ++ L + H + +K+NV+ P L
Sbjct: 39 DEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAA 98
Query: 128 QQG 130
+ G
Sbjct: 99 RYG 101
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 154 VVHFYKDGSVNCKILDE-HMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212
V+ F+ C+ +T ++ + RF+K+N E P L+ R RI+ IPT+ L ++
Sbjct: 59 VIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIXLYRN 118
Query: 213 SVTKDYIVG 221
D + G
Sbjct: 119 GKXIDXLNG 127
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%)
Query: 139 DEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTER 198
+ K F + K+ +VV F+ + C IL ++ L + + F KLN E + + R
Sbjct: 12 NSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEESQDIAMR 71
Query: 199 LRIKVIPTLTLVKDSVTKDYIVG 221
I +PT+ K+ D I+G
Sbjct: 72 YGIMSLPTIMFFKNGELVDQILG 94
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 36/83 (43%)
Query: 139 DEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTER 198
D K F VV F+ + C IL ++ L + + + F KLN + P + R
Sbjct: 5 DSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAAR 64
Query: 199 LRIKVIPTLTLVKDSVTKDYIVG 221
+ +PT+ KD D I+G
Sbjct: 65 YGVMSLPTVIFFKDGEPVDEIIG 87
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212
+V+ F C+I+ L KK F+K++V+ + E+ ++ +PT +K+
Sbjct: 37 VVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKE 96
Query: 213 SVTKDYIVG 221
KD +VG
Sbjct: 97 GDVKDRVVG 105
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFI-KLNVERAPFLTERLRIKVIPTLTLV 210
+V FY D CK++ ++ L K++ +I K+NV++ P L I+ IPT+ V
Sbjct: 55 IVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFV 112
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212
+VV F CK++ L KK F+K++V+ + E ++ +PT +KD
Sbjct: 29 IVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTFIFLKD 88
Query: 213 SVTKDYIVG 221
D VG
Sbjct: 89 GKLVDKTVG 97
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 34.7 bits (78), Expect = 0.073, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 144 FDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIK 202
FD +S +V F+ +CK++ ++ L + + +KL+V+ P + +
Sbjct: 13 FDSKVESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVM 72
Query: 203 VIPTLTLVKDSVTKDYIVGFTELGNCAD 230
IPTL + KD D +VGF N A+
Sbjct: 73 SIPTLIVFKDGQPVDKVVGFQPKENLAE 100
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFI-KLNVERAPFLTERLRIKVIPTLTLV 210
+V FY D CK++ ++ L K++ +I K+NV++ P L I+ IPT+ V
Sbjct: 55 IVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTIWFV 112
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 34.7 bits (78), Expect = 0.084, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 144 FDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIK 202
FD +S +V F+ CK++ ++ L + + +KL+V+ P + +
Sbjct: 13 FDSKVESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVM 72
Query: 203 VIPTLTLVKDSVTKDYIVGFTELGNCAD 230
IPTL + KD D +VGF N A+
Sbjct: 73 SIPTLIVFKDGQPVDKVVGFQPKENLAE 100
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 34.7 bits (78), Expect = 0.085, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 144 FDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIK 202
FD +S +V F+ CK++ ++ L + + +KL+V+ P + +
Sbjct: 14 FDSKVESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVM 73
Query: 203 VIPTLTLVKDSVTKDYIVGFTELGNCAD 230
IPTL + KD D +VGF N A+
Sbjct: 74 SIPTLIVFKDGQPVDKVVGFQPKENLAE 101
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 34.3 bits (77), Expect = 0.088, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 140 EKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFI-KLNVERAPFLTER 198
++ F + + P ++V F+ + C+ + ++ + K++ + KL+V+ P R
Sbjct: 9 DQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXR 68
Query: 199 LRIKVIPTLTLVKDSVTKDYIVG 221
R+ IPT+ L KD + +VG
Sbjct: 69 YRVXSIPTVILFKDGQPVEVLVG 91
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 34.3 bits (77), Expect = 0.088, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 140 EKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFI-KLNVERAPFLTER 198
++ F + + P ++V F+ + C+ + ++ + K++ + KL+V+ P R
Sbjct: 8 DQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXR 67
Query: 199 LRIKVIPTLTLVKDSVTKDYIVG 221
R+ IPT+ L KD + +VG
Sbjct: 68 YRVXSIPTVILFKDGQPVEVLVG 90
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 33.5 bits (75), Expect = 0.15, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 144 FDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIK 202
FD +S +V F+ CK++ ++ L + + +KL+V+ P + +
Sbjct: 14 FDSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVM 73
Query: 203 VIPTLTLVKDSVTKDYIVGFTELGNCAD 230
IPTL + KD D +VGF N A+
Sbjct: 74 SIPTLIVFKDGQPVDKVVGFQPKENLAE 101
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 43/85 (50%)
Query: 137 IPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLT 196
+ + +F + ++ ++V F+ + CK + + K + + FIK++V+ +T
Sbjct: 13 VTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVT 72
Query: 197 ERLRIKVIPTLTLVKDSVTKDYIVG 221
E+ I +PT + K+ + D ++G
Sbjct: 73 EKENITSMPTFKVYKNGSSVDTLLG 97
>pdb|1A0R|P Chain P, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 245
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 148 KKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTL 207
+K +VVH Y+DG C L+ + L ++ +F K+ +R V+PTL
Sbjct: 131 QKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASNTG-AGDRFSSDVLPTL 189
Query: 208 TLVKDSVTKDYIVGFTE 224
+ K + TE
Sbjct: 190 LVYKGGELLSNFISVTE 206
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 31/69 (44%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212
+++ F C+ + KK F+K++V+ + E+ ++ +PT +KD
Sbjct: 39 VIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKD 98
Query: 213 SVTKDYIVG 221
D +VG
Sbjct: 99 GAEADKVVG 107
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 32.7 bits (73), Expect = 0.29, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 133 EYEEIPDEK-KFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVE 190
E +++ D K F L + P MV F+ CK++ + L K++ + KLN +
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMV-DFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTD 59
Query: 191 RAPFLTERLRIKVIPTLTLVKDSVTKDYIVG 221
AP + + I+ IPT+ K+ K+ I+G
Sbjct: 60 EAPGIATQYNIRSIPTVLFFKNGERKESIIG 90
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKV 203
D+ K ++V F+ + CK++ + + ++ + KLN+++ P + I+
Sbjct: 25 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 84
Query: 204 IPTLTLVKDSVTKDYIVGFTELGNCADF 231
IPTL L K+ VG G +F
Sbjct: 85 IPTLLLFKNGEVAATKVGALSKGQLKEF 112
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 152 NMVVHFYKDGSVNCKILDEHMKTLCK--KHLETRFIKLNVERAPFLTERLRIKVIPTLTL 209
+ ++ FY C+ L ++ + + LE K++V P L+ R I +PT+
Sbjct: 24 DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYH 83
Query: 210 VKDSVTKDY 218
KD + Y
Sbjct: 84 CKDGEFRRY 92
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 32.3 bits (72), Expect = 0.38, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKV 203
D+ K S ++V F+ + CK++ + + K+ + K+N++ P +++
Sbjct: 15 DVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRS 74
Query: 204 IPTLTLVKDSVTKDYIVG 221
IPTL LV+D D VG
Sbjct: 75 IPTLMLVRDGKVIDKKVG 92
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212
+V+ F +I+ L KK F+K++V+ + E+ ++ +PT +K+
Sbjct: 40 VVIDFTASWCGPSRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKE 99
Query: 213 SVTKDYIVG 221
KD +VG
Sbjct: 100 GDVKDRVVG 108
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 32.0 bits (71), Expect = 0.44, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 142 KFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLR 200
K F L + P MV F+ CK++ + L K++ + KLN + AP + +
Sbjct: 10 KEFVLESEVPVMV-DFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYN 68
Query: 201 IKVIPTLTLVKDSVTKDYIVG 221
I+ IPT+ K+ K+ I+G
Sbjct: 69 IRSIPTVLFFKNGERKESIIG 89
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 32.0 bits (71), Expect = 0.49, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 35/69 (50%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212
+VV FY CK++ ++ +++ + F KL+V+ + ++ + +PTL L K+
Sbjct: 21 VVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKN 80
Query: 213 SVTKDYIVG 221
+VG
Sbjct: 81 GKEVAKVVG 89
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 32.0 bits (71), Expect = 0.49, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 35/69 (50%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212
+VV FY CK++ ++ +++ + F KL+V+ + ++ + +PTL L K+
Sbjct: 27 VVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKN 86
Query: 213 SVTKDYIVG 221
+VG
Sbjct: 87 GKEVAKVVG 95
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 32.0 bits (71), Expect = 0.56, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 185 IKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELGNCAD 230
+KL+V+ P + + IPTL + KD D +VGF N A+
Sbjct: 56 LKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAE 101
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 31.6 bits (70), Expect = 0.67, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKV 203
D+ K ++V F+ + V CK++ + + ++ + KLN+++ P + I+
Sbjct: 15 DVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 204 IPTLTLVKDSVTKDYIVGFTELGNCADF 231
IPTL L K+ VG G +F
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212
+VV F+ C+ + ++ L K+ E F K++V++ + + +PT +KD
Sbjct: 22 IVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKD 81
Query: 213 SVTKDYIVGFTE 224
D G E
Sbjct: 82 GKEVDRFSGANE 93
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 34/69 (49%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212
+V+ FY CK++ ++ L + + F+K++V+ + + +I +PT +K+
Sbjct: 23 VVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFLFMKN 82
Query: 213 SVTKDYIVG 221
D + G
Sbjct: 83 GQKLDSLSG 91
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 33/69 (47%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212
+VV F+ CK++ ++ +++ + F KL+V+ + ++ + +PTL K
Sbjct: 29 VVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKG 88
Query: 213 SVTKDYIVG 221
+VG
Sbjct: 89 GKEVTRVVG 97
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 31/69 (44%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212
+++ F C+++ KK F+K++V+ + E ++ +PT +KD
Sbjct: 31 VIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTFLFIKD 90
Query: 213 SVTKDYIVG 221
D +VG
Sbjct: 91 GEKVDSVVG 99
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/91 (19%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 132 GEYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVE 190
G + + D+ D+ K ++V F+ C+ + ++ + ++ + +KLN++
Sbjct: 5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNID 64
Query: 191 RAPFLTERLRIKVIPTLTLVKDSVTKDYIVG 221
P + + IPTL + + IVG
Sbjct: 65 ENPGTAAKYGVMSIPTLNVYQGGEVAKTIVG 95
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKV 203
D+ K ++V F+ + +CK++ + + ++ + KLN+++ P + I+
Sbjct: 15 DVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 204 IPTLTLVKDSVTKDYIVGFTELGNCADF 231
IPTL L K+ VG G +F
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKV 203
D+ K ++V F+ + CK++ + + ++ + KLN+++ P + I+
Sbjct: 16 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 75
Query: 204 IPTLTLVKDSVTKDYIVGFTELGNCADF 231
PTL L K+ VG G +F
Sbjct: 76 TPTLLLFKNGEVAATKVGALSKGQLKEF 103
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 137 IPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFL 195
+ DE D+ K ++V F+ + CK++ + + ++ + KLN+++ P
Sbjct: 7 LTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 196 TERLRIKVIPTLTLVKDSVTKDYIVGFTELGNCADF 231
+ I+ IPTL L K+ VG G +F
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 33/69 (47%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212
+VV F+ CK++ ++ +++ + F KL+V+ + ++ + +PTL K
Sbjct: 22 VVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKG 81
Query: 213 SVTKDYIVG 221
+VG
Sbjct: 82 GKEVTRVVG 90
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 186 KLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVG 221
KLN + AP + + I+ IPT+ K+ K+ I+G
Sbjct: 55 KLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIG 90
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKV 203
D+ K ++V F+ + CK++ + + ++ + KLN+++ P + I+
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 204 IPTLTLVKDSVTKDYIVGFTELGNCADF 231
IPTL L K+ VG G +F
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 148 KKSPNMV-VHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPT 206
K++P +V V F+ C+ L + + ++ + + + FIK++V++ + + IP
Sbjct: 20 KEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPA 79
Query: 207 LTLVK 211
L VK
Sbjct: 80 LFFVK 84
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 5 LQDTVLNVAKN--VEKQIDEEIYRLENLDLDSIEKLREDHLKKLKAKAKR--------NQ 54
+ D LN+ K+ ++K ID +Y +D ++ R D+L KL AKA N+
Sbjct: 103 INDMALNIIKSFLLDKTIDVLLY------VDRLDAYRVDNLDKLVAKAITDSFGKGIWNK 156
Query: 55 ELKALGHGEYEEIPDEKKFFDLCKKSPNMVVHFYKDGS 92
+ AL H ++ PD + + K ++ + G+
Sbjct: 157 AIVALTHAQFSP-PDGLPYDEFFSKRSEALLQVVRSGA 193
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 29.6 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKV 203
D+ K ++V F+ + CK++ + + +++ + KLN+++ P + I+
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 204 IPTLTLVKDSVTKDYIVGFTELGNCADF 231
IPTL L K+ VG G +F
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 29.6 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKV 203
D+ K ++V F+ + CK++ ++ + ++ + KLN+++ P + I+
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 204 IPTLTLVKDSVTKDYIVGFTELGNCADF 231
IPTL L K+ VG G +F
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 29.6 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKV 203
D+ K ++V F+ + CK++ + + ++ + KLN+++ P + I+
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRS 74
Query: 204 IPTLTLVKDSVTKDYIVGFTELGNCADF 231
IPTL L K+ VG G +F
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFI-KLNVERAPFLTERLRIKVIPTLTLVK 211
++V F+ C+++ ++ + H + + KLNV+ P T + I IPTL L K
Sbjct: 20 VLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFK 79
Query: 212 DSVTKDYIVGF 222
++G+
Sbjct: 80 GGEPVKQLIGY 90
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFI-KLNVERAPFLTERLRIKVIPTLTLVK 211
++V F+ C+++ ++ + H + + KLNV+ P T + I IPTL L K
Sbjct: 20 VLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFK 79
Query: 212 DSVTKDYIVGF 222
++G+
Sbjct: 80 GGRPVKQLIGY 90
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFI-KLNVERAPFLTERLRIKVIPTLTLVK 211
++V F+ C+++ ++ + H + + KLNV+ P T + I IPTL L K
Sbjct: 20 VLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFK 79
Query: 212 DSVTKDYIVGF 222
++G+
Sbjct: 80 GGRPVKQLIGY 90
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFI-KLNVERAPFLTERLRIKVIPTLTLVK 211
++V F+ C+++ ++ + H + + KLNV+ P T + I IPTL L K
Sbjct: 20 VLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFK 79
Query: 212 DSVTKDYIVGF 222
++G+
Sbjct: 80 GGEPVKQLIGY 90
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 5 LQDTVLNVAKN--VEKQIDEEIYRLENLDLDSIEKLREDHLKKLKAKAKR--------NQ 54
+ D LN+ K+ ++K ID +Y +D ++ R D+L KL AKA N+
Sbjct: 103 INDXALNIIKSFLLDKTIDVLLY------VDRLDAYRVDNLDKLVAKAITDSFGKGIWNK 156
Query: 55 ELKALGHGEYEEIPDEKKFFDLCKKSPNMVVHFYKDGS 92
+ AL H ++ PD + + K ++ + G+
Sbjct: 157 AIVALTHAQFSP-PDGLPYDEFFSKRSEALLQVVRSGA 193
>pdb|3KHD|A Chain A, Crystal Structure Of Pff1300w.
pdb|3KHD|B Chain B, Crystal Structure Of Pff1300w.
pdb|3KHD|C Chain C, Crystal Structure Of Pff1300w.
pdb|3KHD|D Chain D, Crystal Structure Of Pff1300w
Length = 520
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 37 KLREDHLKKLKAKAKRNQELKALGHGEYEEIPDEKKFFDLCKKSPNMV----VHFYKDGS 92
++R LK + K +LK + +YE + DE KK P V + DGS
Sbjct: 116 EIRTGFLKNKEVHLKEGSKLKLVT--DYEFLGDETCIACSYKKLPQSVKPGNIILIADGS 173
Query: 93 VNCKILDEH 101
V+CK+L+ H
Sbjct: 174 VSCKVLETH 182
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 133 EYEEIPDEKKFFDLCKKSPNMV----VHFYKDGSVNCKILDEH 171
+YE + DE KK P V + DGSV+CK+L+ H
Sbjct: 140 DYEFLGDETCIACSYKKLPQSVKPGNIILIADGSVSCKVLETH 182
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKV 203
D+ K ++V F+ + CK++ + + ++ + KLN+++ P + I+
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 204 IPTLTLVKDSVTKDYIVGFTELGNCADF 231
IPTL L K+ VG G +F
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKV 203
D+ K ++V F+ + CK++ + + ++ + KLN+++ P + I+
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 204 IPTLTLVKDSVTKDYIVGFTELGNCADF 231
IPTL L K+ VG G +F
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 29.3 bits (64), Expect = 3.3, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKV 203
D+ K ++V F+ + CK++ + + ++ + KLN+++ P + I+
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 204 IPTLTLVKDSVTKDYIVGFTELGNCADF 231
IPTL L K+ VG G +F
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 29.3 bits (64), Expect = 3.3, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKV 203
D+ K ++V F+ + CK++ + + ++ + KLN+++ P + I+
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 204 IPTLTLVKDSVTKDYIVGFTELGNCADF 231
IPTL L K+ VG G +F
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 29.3 bits (64), Expect = 3.3, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKV 203
D+ K ++V F+ + CK++ + + ++ + KLN+++ P + I+
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 204 IPTLTLVKDSVTKDYIVGFTELGNCADF 231
IPTL L K+ VG G +F
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 29.3 bits (64), Expect = 3.3, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKV 203
D+ K ++V F+ + CK++ + + ++ + KLN+++ P + I+
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 204 IPTLTLVKDSVTKDYIVGFTELGNCADF 231
IPTL L K+ VG G +F
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKV 203
D+ K ++V F+ + CK++ + + ++ + KLN+++ P + I+
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 204 IPTLTLVKDSVTKDYIVGFTELGNCADF 231
IPTL L K+ VG G +F
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKV 203
D+ K ++V F+ + K++ + + ++ + KLN+++ P + I+
Sbjct: 35 DVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 94
Query: 204 IPTLTLVKDSVTKDYIVGFTELGNCADF 231
IPTL L K+ VG G +F
Sbjct: 95 IPTLLLFKNGEVAATKVGALSKGQLKEF 122
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 153 MVVHFYKDGSVNCKILDEHM-KTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVK 211
+VV F+ CKIL + K + K+H + K++++ L + +PT+ +K
Sbjct: 34 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93
Query: 212 DSVTKDYIVGF 222
+ D VG
Sbjct: 94 NGDVVDKFVGI 104
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 28.9 bits (63), Expect = 3.9, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKV 203
D+ K ++V F+ + CK++ + + ++ + KLN+++ P + I+
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 204 IPTLTLVKDSVTKDYIVGFTELGNCADF 231
IPTL L K+ VG G +F
Sbjct: 75 IPTLLLFKNGDVAATKVGALSKGQLKEF 102
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKV 203
D+ K ++V F+ + CK++ + + ++ + KLN+++ P + I+
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 204 IPTLTLVKDSVTKDYIVGFTELGNCADF 231
IPTL L K+ VG G +F
Sbjct: 75 IPTLLLFKNGEVAACKVGALSKGQLKEF 102
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 29/69 (42%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212
+VV F C+ + L KK F+K++ + + I+ +PT +K+
Sbjct: 41 VVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKE 100
Query: 213 SVTKDYIVG 221
D +VG
Sbjct: 101 GKILDKVVG 109
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 28.5 bits (62), Expect = 4.8, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKV 203
D+ K ++V F+ + CK++ + + + + KLN+++ P + I+
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 204 IPTLTLVKDSVTKDYIVGFTELGNCADF 231
IPTL L K+ VG G +F
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 136 EIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLC-KKHLETRFIKLNVERAPF 194
++ D D+ + ++V F+ CK++ ++ + ++ + KL+V+ P
Sbjct: 16 KVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPE 75
Query: 195 LTERLRIKVIPTLTLVKDSVTKDYIVG 221
++ IPTL L KD IVG
Sbjct: 76 TARNFQVVSIPTLILFKDGQPVKRIVG 102
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 28.1 bits (61), Expect = 7.6, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 34/69 (49%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212
+VV FY K++ ++ +++ + F KL+V+ + ++ + +PTL L K+
Sbjct: 27 VVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKN 86
Query: 213 SVTKDYIVG 221
+VG
Sbjct: 87 GKEVAKVVG 95
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 27.7 bits (60), Expect = 8.2, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 152 NMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVK 211
+ +V F+K+ +CK +++ + + + ++ E P L + L + +PTL ++
Sbjct: 21 DAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGFERVPTLVFIR 80
Query: 212 D 212
D
Sbjct: 81 D 81
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 136 EIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLC-KKHLETRFIKLNVERAPF 194
++ D D+ + ++V F+ CK++ ++ + ++ + KL+V+ P
Sbjct: 11 KVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPE 70
Query: 195 LTERLRIKVIPTLTLVKDSVTKDYIVG 221
++ IPTL L KD IVG
Sbjct: 71 TARNFQVVSIPTLILFKDGQPVKRIVG 97
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 27.7 bits (60), Expect = 9.6, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKV 203
D+ K ++V F+ + C+++ + + ++ + KLN+++ P + I+
Sbjct: 15 DVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 204 IPTLTLVKDSVTKDYIVGFTELGNCADF 231
IPTL L K+ VG G +F
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,197,170
Number of Sequences: 62578
Number of extensions: 372459
Number of successful extensions: 947
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 116
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)