Query psy6451
Match_columns 332
No_of_seqs 362 out of 1923
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 18:14:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1672|consensus 100.0 2.2E-44 4.8E-49 308.6 16.7 199 1-276 5-203 (211)
2 cd02987 Phd_like_Phd Phosducin 100.0 7.3E-33 1.6E-37 242.0 16.0 162 8-244 11-175 (175)
3 cd02988 Phd_like_VIAF Phosduci 100.0 4E-31 8.8E-36 234.0 16.8 154 13-244 37-192 (192)
4 PF02114 Phosducin: Phosducin; 99.9 4.9E-27 1.1E-31 217.0 15.6 147 24-247 90-241 (265)
5 cd02989 Phd_like_TxnDC9 Phosdu 99.9 1.4E-24 3E-29 176.7 13.3 112 129-240 1-112 (113)
6 KOG3170|consensus 99.9 3.5E-22 7.6E-27 172.4 15.9 146 28-251 62-208 (240)
7 cd02957 Phd_like Phosducin (Ph 99.9 8.9E-23 1.9E-27 165.7 10.8 108 130-240 2-112 (113)
8 KOG0910|consensus 99.9 1.7E-21 3.7E-26 162.9 10.9 95 138-232 48-144 (150)
9 PHA02278 thioredoxin-like prot 99.8 1.2E-20 2.5E-25 151.0 12.3 91 138-228 2-97 (103)
10 cd02954 DIM1 Dim1 family; Dim1 99.8 1.8E-20 3.8E-25 151.9 12.1 88 141-228 3-93 (114)
11 KOG0907|consensus 99.8 5.2E-20 1.1E-24 147.7 11.6 85 140-224 10-95 (106)
12 TIGR02187 GlrX_arch Glutaredox 99.8 1.6E-19 3.5E-24 162.8 15.0 153 72-228 12-208 (215)
13 KOG0190|consensus 99.8 3.7E-20 8E-25 182.0 10.4 93 143-245 376-474 (493)
14 cd02985 TRX_CDSP32 TRX family, 99.8 5.4E-19 1.2E-23 141.2 12.7 86 139-224 2-92 (103)
15 cd03006 PDI_a_EFP1_N PDIa fami 99.8 3.1E-19 6.6E-24 145.1 11.4 98 132-230 9-111 (113)
16 cd02948 TRX_NDPK TRX domain, T 99.8 5.6E-19 1.2E-23 140.8 12.7 87 135-222 2-90 (102)
17 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 2.8E-19 6.2E-24 141.8 10.1 95 135-230 4-99 (101)
18 cd03065 PDI_b_Calsequestrin_N 99.8 6E-19 1.3E-23 144.7 10.9 105 130-236 7-119 (120)
19 PLN00410 U5 snRNP protein, DIM 99.8 1.2E-18 2.7E-23 146.3 12.6 89 134-222 5-98 (142)
20 PF00085 Thioredoxin: Thioredo 99.8 2.1E-18 4.5E-23 135.9 12.8 95 139-233 5-101 (103)
21 cd02999 PDI_a_ERp44_like PDIa 99.8 1.3E-18 2.8E-23 138.4 10.0 83 148-231 16-99 (100)
22 PTZ00051 thioredoxin; Provisio 99.8 2.8E-18 6.2E-23 134.9 11.5 90 134-223 2-91 (98)
23 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 1.8E-18 3.9E-23 137.7 10.3 91 140-230 8-102 (104)
24 COG3118 Thioredoxin domain-con 99.8 1.1E-18 2.3E-23 160.5 9.7 104 134-238 25-132 (304)
25 PRK10996 thioredoxin 2; Provis 99.8 7.3E-18 1.6E-22 142.0 14.0 101 132-233 35-136 (139)
26 cd02965 HyaE HyaE family; HyaE 99.8 2.7E-18 5.9E-23 138.3 10.7 88 140-227 17-107 (111)
27 cd02956 ybbN ybbN protein fami 99.8 3.7E-18 7.9E-23 133.9 11.1 89 143-231 3-94 (96)
28 cd02963 TRX_DnaJ TRX domain, D 99.8 5.4E-18 1.2E-22 137.3 11.3 94 139-232 10-108 (111)
29 PRK09381 trxA thioredoxin; Pro 99.8 9.2E-18 2E-22 134.8 12.4 100 134-234 5-106 (109)
30 cd02996 PDI_a_ERp44 PDIa famil 99.8 4.5E-18 9.7E-23 136.6 10.5 97 134-231 3-107 (108)
31 KOG0191|consensus 99.7 4.8E-18 1E-22 165.9 11.3 174 61-234 28-250 (383)
32 KOG0908|consensus 99.7 3.9E-18 8.5E-23 152.3 9.3 92 134-225 3-96 (288)
33 cd02986 DLP Dim1 family, Dim1- 99.7 1.6E-17 3.4E-22 133.9 11.2 82 141-222 3-87 (114)
34 cd02994 PDI_a_TMX PDIa family, 99.7 2.3E-17 5.1E-22 130.6 11.0 95 134-232 3-99 (101)
35 KOG3171|consensus 99.7 1.8E-17 3.9E-22 144.7 10.7 147 28-248 109-255 (273)
36 cd02984 TRX_PICOT TRX domain, 99.7 3.8E-17 8.3E-22 128.1 11.3 84 140-223 2-88 (97)
37 cd03005 PDI_a_ERp46 PDIa famil 99.7 3E-17 6.4E-22 129.6 10.5 93 136-230 4-100 (102)
38 cd02962 TMX2 TMX2 family; comp 99.7 6.7E-17 1.4E-21 137.9 12.4 93 131-224 27-129 (152)
39 KOG0190|consensus 99.7 3.4E-17 7.4E-22 161.2 9.0 131 140-283 32-167 (493)
40 cd02997 PDI_a_PDIR PDIa family 99.7 1.1E-16 2.4E-21 126.6 10.4 91 140-230 7-102 (104)
41 TIGR01068 thioredoxin thioredo 99.7 1.8E-16 4E-21 124.2 11.4 94 140-233 3-98 (101)
42 cd03002 PDI_a_MPD1_like PDI fa 99.7 1.7E-16 3.6E-21 127.1 10.1 92 140-231 7-107 (109)
43 cd02950 TxlA TRX-like protein 99.7 2.5E-16 5.5E-21 133.1 11.3 96 141-240 11-110 (142)
44 cd02975 PfPDO_like_N Pyrococcu 99.7 3.7E-16 7.9E-21 127.0 11.4 92 143-234 15-108 (113)
45 PTZ00443 Thioredoxin domain-co 99.7 4.5E-16 9.8E-21 140.8 12.5 105 133-238 31-141 (224)
46 cd02953 DsbDgamma DsbD gamma f 99.7 2.1E-16 4.7E-21 125.9 8.7 88 141-228 2-99 (104)
47 cd02949 TRX_NTR TRX domain, no 99.7 7.7E-16 1.7E-20 121.3 11.4 82 147-228 10-92 (97)
48 cd03000 PDI_a_TMX3 PDIa family 99.7 4.6E-16 1E-20 124.1 10.2 89 141-231 7-99 (104)
49 cd03001 PDI_a_P5 PDIa family, 99.7 7.8E-16 1.7E-20 121.7 10.8 89 140-228 7-98 (103)
50 TIGR01126 pdi_dom protein disu 99.7 6.5E-16 1.4E-20 121.5 9.9 92 140-231 3-97 (102)
51 PTZ00062 glutaredoxin; Provisi 99.6 3.6E-15 7.7E-20 133.0 13.9 148 138-294 4-166 (204)
52 TIGR01295 PedC_BrcD bacterioci 99.6 3.4E-15 7.4E-20 123.0 11.9 83 139-222 12-109 (122)
53 cd02961 PDI_a_family Protein D 99.6 2.4E-15 5.2E-20 117.0 9.7 88 139-226 4-95 (101)
54 cd02947 TRX_family TRX family; 99.6 6.4E-15 1.4E-19 112.3 11.4 90 142-231 2-91 (93)
55 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 4.5E-15 9.7E-20 117.3 9.4 89 141-230 8-102 (104)
56 cd02993 PDI_a_APS_reductase PD 99.6 5.9E-15 1.3E-19 118.9 10.0 87 134-221 3-97 (109)
57 cd03007 PDI_a_ERp29_N PDIa fam 99.6 7.3E-15 1.6E-19 119.4 8.6 91 139-232 7-112 (116)
58 cd02998 PDI_a_ERp38 PDIa famil 99.6 9.1E-15 2E-19 115.6 9.0 85 141-225 8-98 (105)
59 PTZ00102 disulphide isomerase; 99.6 4.1E-14 8.8E-19 141.5 15.8 164 61-228 231-457 (477)
60 cd02952 TRP14_like Human TRX-r 99.6 1.9E-14 4.1E-19 117.8 9.5 79 136-214 5-101 (119)
61 cd02951 SoxW SoxW family; SoxW 99.6 3.8E-14 8.3E-19 116.7 11.4 88 141-228 4-111 (125)
62 cd02992 PDI_a_QSOX PDIa family 99.5 7.7E-14 1.7E-18 113.5 10.2 86 135-222 4-96 (114)
63 PTZ00102 disulphide isomerase; 99.5 1.2E-13 2.6E-18 138.0 12.1 100 134-235 34-137 (477)
64 TIGR01130 ER_PDI_fam protein d 99.5 1.1E-13 2.5E-18 137.1 11.8 97 139-235 7-108 (462)
65 TIGR02187 GlrX_arch Glutaredox 99.5 3.6E-13 7.9E-18 121.5 10.5 89 144-233 14-108 (215)
66 TIGR00424 APS_reduc 5'-adenyly 99.4 5.1E-13 1.1E-17 132.3 11.6 93 140-232 358-459 (463)
67 TIGR00411 redox_disulf_1 small 99.4 6.8E-13 1.5E-17 100.6 9.7 74 153-230 2-76 (82)
68 cd02982 PDI_b'_family Protein 99.4 4.5E-13 9.7E-18 106.0 9.0 72 150-221 12-88 (103)
69 KOG0912|consensus 99.4 1.5E-13 3.2E-18 126.2 6.8 102 142-243 5-113 (375)
70 cd02959 ERp19 Endoplasmic reti 99.4 3.8E-13 8.1E-18 110.0 8.3 87 141-227 10-101 (117)
71 PLN02309 5'-adenylylsulfate re 99.4 7.1E-13 1.5E-17 131.2 11.6 98 134-232 347-453 (457)
72 PHA02125 thioredoxin-like prot 99.4 1.1E-12 2.3E-17 98.8 8.9 63 154-224 2-64 (75)
73 cd02989 Phd_like_TxnDC9 Phosdu 99.4 2.4E-13 5.3E-18 110.4 5.7 76 59-134 1-76 (113)
74 TIGR01130 ER_PDI_fam protein d 99.4 2.9E-12 6.4E-17 127.0 14.1 162 61-226 216-444 (462)
75 KOG4277|consensus 99.4 5.6E-13 1.2E-17 122.3 5.1 80 148-228 41-124 (468)
76 KOG1672|consensus 99.3 7.3E-13 1.6E-17 114.6 4.8 138 127-326 61-210 (211)
77 TIGR00412 redox_disulf_2 small 99.3 1.2E-11 2.6E-16 93.3 9.0 62 154-222 2-64 (76)
78 cd02957 Phd_like Phosducin (Ph 99.3 2.4E-12 5.2E-17 104.4 5.3 74 60-135 2-78 (113)
79 cd02955 SSP411 TRX domain, SSP 99.3 3.6E-11 7.9E-16 99.2 12.0 85 140-224 5-102 (124)
80 cd02988 Phd_like_VIAF Phosduci 99.3 8.3E-13 1.8E-17 117.1 2.3 106 4-122 39-144 (192)
81 cd02973 TRX_GRX_like Thioredox 99.3 1.7E-11 3.7E-16 89.6 8.4 61 154-216 3-63 (67)
82 PRK00293 dipZ thiol:disulfide 99.3 3.1E-11 6.7E-16 123.6 11.2 95 133-227 453-561 (571)
83 PRK11509 hydrogenase-1 operon 99.2 8.9E-11 1.9E-15 97.4 11.5 97 141-237 25-125 (132)
84 PTZ00062 glutaredoxin; Provisi 99.2 1.4E-10 3.1E-15 103.5 13.4 142 68-216 4-179 (204)
85 PRK15412 thiol:disulfide inter 99.2 1.1E-10 2.4E-15 102.9 12.3 91 148-240 66-180 (185)
86 cd03010 TlpA_like_DsbE TlpA-li 99.2 5E-11 1.1E-15 98.1 9.3 77 149-226 24-124 (127)
87 TIGR02738 TrbB type-F conjugat 99.2 7.3E-11 1.6E-15 101.0 10.2 80 147-227 47-144 (153)
88 KOG0191|consensus 99.2 3.2E-11 7E-16 117.9 8.6 103 139-241 36-139 (383)
89 PRK14018 trifunctional thiored 99.2 9.3E-11 2E-15 117.8 10.6 86 148-233 54-170 (521)
90 PF13098 Thioredoxin_2: Thiore 99.2 6.6E-11 1.4E-15 95.0 6.9 81 148-228 3-108 (112)
91 TIGR02740 TraF-like TraF-like 99.2 2.1E-10 4.6E-15 107.0 11.2 78 149-227 165-255 (271)
92 cd03026 AhpF_NTD_C TRX-GRX-lik 99.2 2.2E-10 4.7E-15 89.2 9.0 67 150-218 12-78 (89)
93 cd02987 Phd_like_Phd Phosducin 99.1 2E-11 4.4E-16 106.7 3.5 97 31-135 39-137 (175)
94 TIGR00385 dsbE periplasmic pro 99.1 2.6E-10 5.7E-15 99.3 10.2 87 147-235 60-170 (173)
95 cd03009 TryX_like_TryX_NRX Try 99.1 2.3E-10 5E-15 94.7 8.9 70 149-218 17-115 (131)
96 cd03006 PDI_a_EFP1_N PDIa fami 99.1 1.4E-10 3E-15 94.3 6.0 77 60-137 7-88 (113)
97 cd03008 TryX_like_RdCVF Trypar 99.1 4.7E-10 1E-14 95.2 9.4 70 149-218 24-128 (146)
98 cd02964 TryX_like_family Trypa 99.1 4E-10 8.6E-15 93.6 8.8 71 149-219 16-116 (132)
99 KOG0914|consensus 99.1 5.2E-11 1.1E-15 104.9 3.0 144 85-228 75-230 (265)
100 PF13905 Thioredoxin_8: Thiore 99.1 1E-09 2.3E-14 85.4 9.5 65 150-214 1-94 (95)
101 cd02966 TlpA_like_family TlpA- 99.1 9.6E-10 2.1E-14 86.8 9.2 73 149-221 18-116 (116)
102 PLN02919 haloacid dehalogenase 99.0 1.2E-09 2.6E-14 119.1 11.2 90 149-238 419-538 (1057)
103 PRK03147 thiol-disulfide oxido 99.0 2.7E-09 5.9E-14 92.1 10.5 80 149-228 60-164 (173)
104 cd03003 PDI_a_ERdj5_N PDIa fam 99.0 5.7E-10 1.2E-14 88.1 5.6 74 63-137 2-76 (101)
105 cd02954 DIM1 Dim1 family; Dim1 99.0 4.4E-10 9.5E-15 91.2 4.9 67 71-137 3-72 (114)
106 PTZ00051 thioredoxin; Provisio 99.0 5.4E-10 1.2E-14 87.5 4.9 72 64-135 2-73 (98)
107 cd03011 TlpA_like_ScsD_MtbDsbE 99.0 2.4E-09 5.3E-14 87.2 8.9 80 148-228 18-118 (123)
108 KOG0907|consensus 98.9 9.4E-10 2E-14 88.3 4.9 65 72-136 12-77 (106)
109 cd02967 mauD Methylamine utili 98.9 5E-09 1.1E-13 84.2 8.7 69 149-217 20-110 (114)
110 cd03012 TlpA_like_DipZ_like Tl 98.9 6E-09 1.3E-13 85.8 9.3 74 149-222 22-125 (126)
111 KOG0910|consensus 98.9 1.4E-09 3E-14 91.4 5.1 75 62-137 43-119 (150)
112 cd02999 PDI_a_ERp44_like PDIa 98.9 1.5E-09 3.3E-14 86.1 4.8 66 72-137 8-76 (100)
113 cd02986 DLP Dim1 family, Dim1- 98.9 1.7E-09 3.6E-14 87.4 5.0 62 71-132 3-67 (114)
114 PRK13728 conjugal transfer pro 98.9 1.2E-08 2.7E-13 89.2 10.9 74 154-228 73-163 (181)
115 PHA02278 thioredoxin-like prot 98.9 1.6E-09 3.4E-14 86.7 4.7 54 69-122 3-57 (103)
116 cd02996 PDI_a_ERp44 PDIa famil 98.9 2.5E-09 5.3E-14 85.6 5.5 74 63-137 2-82 (108)
117 PF00085 Thioredoxin: Thioredo 98.9 2.3E-09 5.1E-14 84.0 5.3 72 65-137 2-75 (103)
118 cd03004 PDI_a_ERdj5_C PDIa fam 98.9 2.3E-09 5E-14 85.0 5.0 73 64-137 3-77 (104)
119 cd02948 TRX_NDPK TRX domain, T 98.9 2.8E-09 6.1E-14 84.7 5.2 68 65-133 2-71 (102)
120 cd02958 UAS UAS family; UAS is 98.9 2.9E-08 6.2E-13 80.4 10.8 84 144-227 11-102 (114)
121 KOG3170|consensus 98.9 2.2E-09 4.9E-14 93.4 4.4 109 2-122 44-153 (240)
122 KOG4277|consensus 98.9 1.2E-08 2.6E-13 94.1 9.3 149 77-234 40-229 (468)
123 cd02985 TRX_CDSP32 TRX family, 98.8 2.9E-09 6.2E-14 84.8 4.5 53 70-122 3-57 (103)
124 PLN00410 U5 snRNP protein, DIM 98.8 2.7E-09 5.9E-14 89.8 4.4 67 64-130 5-74 (142)
125 PF08534 Redoxin: Redoxin; In 98.8 3.1E-08 6.8E-13 83.2 10.1 76 149-224 27-136 (146)
126 cd03005 PDI_a_ERp46 PDIa famil 98.8 9.9E-09 2.2E-13 80.6 5.6 71 64-136 2-76 (102)
127 COG4232 Thiol:disulfide interc 98.8 2.6E-08 5.5E-13 99.9 9.6 101 127-227 448-559 (569)
128 cd02962 TMX2 TMX2 family; comp 98.8 9.7E-09 2.1E-13 87.7 5.4 72 59-131 25-100 (152)
129 KOG0908|consensus 98.8 7.4E-09 1.6E-13 93.2 4.8 73 63-135 2-76 (288)
130 cd02960 AGR Anterior Gradient 98.8 3.2E-08 6.8E-13 82.1 7.9 83 140-224 13-101 (130)
131 cd02984 TRX_PICOT TRX domain, 98.8 1E-08 2.2E-13 79.9 4.8 66 70-135 2-70 (97)
132 COG0526 TrxA Thiol-disulfide i 98.7 2.3E-08 4.9E-13 78.1 6.7 72 150-221 32-107 (127)
133 cd02994 PDI_a_TMX PDIa family, 98.7 1.4E-08 3.1E-13 79.9 5.5 72 63-137 2-75 (101)
134 cd03002 PDI_a_MPD1_like PDI fa 98.7 1.5E-08 3.3E-13 80.7 5.2 70 64-134 2-75 (109)
135 cd02956 ybbN ybbN protein fami 98.7 1.3E-08 2.8E-13 79.4 4.4 66 72-137 2-70 (96)
136 KOG1731|consensus 98.7 2.5E-08 5.4E-13 99.1 6.2 100 139-238 45-155 (606)
137 cd02963 TRX_DnaJ TRX domain, D 98.7 2.2E-08 4.8E-13 80.8 4.3 69 69-137 10-83 (111)
138 PF13899 Thioredoxin_7: Thiore 98.7 7.3E-08 1.6E-12 73.4 6.8 69 142-211 9-81 (82)
139 cd02993 PDI_a_APS_reductase PD 98.6 4.5E-08 9.8E-13 78.6 5.7 58 63-121 2-64 (109)
140 PTZ00056 glutathione peroxidas 98.6 1.8E-07 3.8E-12 83.5 9.2 41 149-189 38-80 (199)
141 TIGR01626 ytfJ_HI0045 conserve 98.6 2E-07 4.4E-12 82.0 8.7 81 148-230 57-174 (184)
142 PRK09381 trxA thioredoxin; Pro 98.6 8.6E-08 1.9E-12 76.6 5.8 73 63-136 4-78 (109)
143 cd02995 PDI_a_PDI_a'_C PDIa fa 98.6 1E-07 2.2E-12 74.9 5.9 58 64-122 2-63 (104)
144 cd02992 PDI_a_QSOX PDIa family 98.6 8.2E-08 1.8E-12 78.0 5.5 71 63-134 2-79 (114)
145 cd03000 PDI_a_TMX3 PDIa family 98.6 6.7E-08 1.5E-12 76.8 4.6 67 70-137 6-76 (104)
146 cd02997 PDI_a_PDIR PDIa family 98.6 8.9E-08 1.9E-12 75.3 5.3 73 64-137 2-79 (104)
147 cd03001 PDI_a_P5 PDIa family, 98.6 9.6E-08 2.1E-12 75.1 5.3 72 64-136 2-75 (103)
148 PLN02399 phospholipid hydroper 98.6 3.3E-07 7.1E-12 83.8 9.4 42 149-190 98-141 (236)
149 TIGR02661 MauD methylamine deh 98.6 3.9E-07 8.4E-12 80.6 9.7 69 149-218 73-162 (189)
150 PRK10996 thioredoxin 2; Provis 98.5 1.1E-07 2.4E-12 80.0 5.4 75 62-137 35-110 (139)
151 COG3118 Thioredoxin domain-con 98.5 9.7E-08 2.1E-12 88.6 5.3 73 64-137 25-101 (304)
152 PLN02412 probable glutathione 98.5 4.8E-07 1E-11 78.4 9.3 80 149-228 28-156 (167)
153 PTZ00443 Thioredoxin domain-co 98.5 8.8E-08 1.9E-12 86.9 4.9 75 62-137 30-110 (224)
154 TIGR02196 GlrX_YruB Glutaredox 98.5 4.7E-07 1E-11 66.2 7.9 59 154-222 2-64 (74)
155 cd01659 TRX_superfamily Thiore 98.5 5E-07 1.1E-11 62.5 7.5 60 154-213 1-63 (69)
156 cd03065 PDI_b_Calsequestrin_N 98.5 1.2E-07 2.6E-12 77.8 4.8 78 60-138 7-92 (120)
157 TIGR01126 pdi_dom protein disu 98.5 1.1E-07 2.4E-12 74.2 4.2 68 70-137 3-73 (102)
158 cd02961 PDI_a_family Protein D 98.5 1.6E-07 3.5E-12 72.5 4.9 65 69-133 4-71 (101)
159 KOG0911|consensus 98.5 5.7E-08 1.2E-12 86.5 2.6 89 135-225 4-92 (227)
160 cd02965 HyaE HyaE family; HyaE 98.5 1.3E-07 2.8E-12 76.4 4.4 74 63-137 11-87 (111)
161 cd02998 PDI_a_ERp38 PDIa famil 98.5 2.5E-07 5.5E-12 72.6 5.7 69 64-133 2-75 (105)
162 cd02953 DsbDgamma DsbD gamma f 98.5 1.2E-07 2.6E-12 75.2 3.7 52 70-121 1-56 (104)
163 smart00594 UAS UAS domain. 98.5 1.7E-06 3.8E-11 71.0 10.4 84 143-226 20-115 (122)
164 TIGR01068 thioredoxin thioredo 98.4 2.2E-07 4.8E-12 72.2 4.6 67 70-136 3-71 (101)
165 cd02952 TRP14_like Human TRX-r 98.4 2.4E-07 5.3E-12 75.9 4.8 57 67-123 6-72 (119)
166 TIGR02200 GlrX_actino Glutared 98.4 6.5E-07 1.4E-11 66.5 6.7 59 154-218 2-65 (77)
167 cd02975 PfPDO_like_N Pyrococcu 98.4 2E-07 4.4E-12 75.6 4.2 65 73-137 15-79 (113)
168 cd02969 PRX_like1 Peroxiredoxi 98.4 2.2E-06 4.8E-11 74.2 10.7 70 149-218 24-125 (171)
169 TIGR00424 APS_reduc 5'-adenyly 98.4 3.3E-07 7.2E-12 91.2 6.1 61 61-122 350-415 (463)
170 TIGR03143 AhpF_homolog putativ 98.4 6.3E-06 1.4E-10 84.5 15.6 140 82-225 368-547 (555)
171 cd03007 PDI_a_ERp29_N PDIa fam 98.4 2.6E-07 5.5E-12 75.3 3.8 70 64-137 3-84 (116)
172 PRK15317 alkyl hydroperoxide r 98.4 1E-05 2.2E-10 82.3 15.7 134 81-216 19-180 (517)
173 cd00340 GSH_Peroxidase Glutath 98.4 1E-06 2.2E-11 74.9 7.0 40 149-189 21-62 (152)
174 PF13728 TraF: F plasmid trans 98.3 5.5E-06 1.2E-10 74.8 11.3 78 150-228 120-210 (215)
175 PLN02309 5'-adenylylsulfate re 98.3 7.6E-07 1.6E-11 88.6 5.9 76 60-136 343-425 (457)
176 cd02950 TxlA TRX-like protein 98.3 7.7E-07 1.7E-11 75.1 5.0 53 69-121 9-62 (142)
177 cd03017 PRX_BCP Peroxiredoxin 98.3 4.3E-06 9.2E-11 69.4 9.3 80 149-228 22-135 (140)
178 TIGR01295 PedC_BrcD bacterioci 98.3 3.7E-06 7.9E-11 69.2 8.4 56 64-121 8-63 (122)
179 PF00578 AhpC-TSA: AhpC/TSA fa 98.2 6.3E-06 1.4E-10 66.8 8.9 69 149-217 24-123 (124)
180 cd02947 TRX_family TRX family; 98.2 1.7E-06 3.6E-11 65.3 5.1 64 72-135 2-65 (93)
181 TIGR02540 gpx7 putative glutat 98.2 5.7E-06 1.2E-10 70.4 8.3 41 149-189 21-63 (153)
182 TIGR02180 GRX_euk Glutaredoxin 98.2 4.7E-06 1E-10 63.0 6.9 60 154-216 1-65 (84)
183 KOG0913|consensus 98.2 5.1E-07 1.1E-11 80.9 0.9 110 140-258 31-142 (248)
184 TIGR03140 AhpF alkyl hydropero 98.1 7.3E-05 1.6E-09 76.1 15.7 134 81-216 19-181 (515)
185 cd03014 PRX_Atyp2cys Peroxired 98.1 2.5E-05 5.4E-10 65.3 9.8 76 149-224 25-131 (143)
186 cd02949 TRX_NTR TRX domain, no 98.1 3.7E-06 8.1E-11 65.8 4.2 57 78-134 11-68 (97)
187 PF13192 Thioredoxin_3: Thiore 98.1 2.7E-05 5.8E-10 58.4 8.6 61 155-221 3-63 (76)
188 PRK00522 tpx lipid hydroperoxi 98.1 2E-05 4.4E-10 68.2 9.0 74 149-222 43-150 (167)
189 PF14595 Thioredoxin_9: Thiore 98.1 1E-05 2.2E-10 67.3 6.8 73 150-222 41-117 (129)
190 cd02970 PRX_like2 Peroxiredoxi 98.1 3.1E-05 6.7E-10 64.7 9.9 43 150-192 24-68 (149)
191 PRK11200 grxA glutaredoxin 1; 98.1 1.8E-05 3.8E-10 60.6 7.6 62 153-216 2-69 (85)
192 PTZ00256 glutathione peroxidas 98.1 2.1E-05 4.5E-10 69.1 8.9 41 149-189 39-82 (183)
193 PRK09437 bcp thioredoxin-depen 98.0 3E-05 6.5E-10 65.8 9.3 79 149-227 29-144 (154)
194 cd03015 PRX_Typ2cys Peroxiredo 98.0 3.7E-05 8.1E-10 66.7 10.0 78 149-226 28-143 (173)
195 TIGR03137 AhpC peroxiredoxin. 98.0 6.4E-05 1.4E-09 66.3 10.6 76 149-224 30-140 (187)
196 cd03018 PRX_AhpE_like Peroxire 98.0 8.5E-05 1.8E-09 62.3 10.8 74 150-223 28-134 (149)
197 KOG2501|consensus 98.0 1.5E-05 3.2E-10 67.8 5.9 71 148-218 31-131 (157)
198 KOG3414|consensus 98.0 7.5E-05 1.6E-09 60.8 9.6 87 135-221 6-95 (142)
199 PHA02125 thioredoxin-like prot 98.0 5.9E-06 1.3E-10 61.8 3.0 51 83-138 1-51 (75)
200 cd02959 ERp19 Endoplasmic reti 97.9 1.2E-05 2.5E-10 65.7 4.8 50 71-120 10-60 (117)
201 PF06110 DUF953: Eukaryotic pr 97.9 0.00019 4.1E-09 58.8 11.2 66 148-213 17-99 (119)
202 cd02951 SoxW SoxW family; SoxW 97.9 1.2E-05 2.5E-10 65.9 4.1 52 71-122 4-60 (125)
203 cd02973 TRX_GRX_like Thioredox 97.9 1.1E-05 2.5E-10 58.5 3.4 54 84-137 3-56 (67)
204 PF07449 HyaE: Hydrogenase-1 e 97.9 3.4E-05 7.4E-10 61.8 6.1 91 135-226 12-105 (107)
205 TIGR02739 TraF type-F conjugat 97.8 0.00015 3.3E-09 67.0 10.5 78 150-227 150-239 (256)
206 PRK13703 conjugal pilus assemb 97.8 0.00013 2.8E-09 67.1 9.4 78 150-227 143-232 (248)
207 cd02976 NrdH NrdH-redoxin (Nrd 97.8 0.00012 2.6E-09 53.1 7.6 51 154-209 2-56 (73)
208 PF03190 Thioredox_DsbH: Prote 97.8 0.00024 5.2E-09 61.2 10.3 83 140-222 27-122 (163)
209 COG2143 Thioredoxin-related pr 97.8 0.00023 4.9E-09 60.3 9.5 85 143-227 35-140 (182)
210 PRK15000 peroxidase; Provision 97.7 0.00042 9.1E-09 61.9 11.7 79 149-227 33-149 (200)
211 PF00462 Glutaredoxin: Glutare 97.7 0.00019 4E-09 51.0 7.5 55 154-215 1-59 (60)
212 cd02971 PRX_family Peroxiredox 97.7 0.00016 3.5E-09 59.8 8.3 76 149-224 21-131 (140)
213 cd02968 SCO SCO (an acronym fo 97.7 0.00013 2.7E-09 60.6 7.6 42 149-190 21-68 (142)
214 TIGR02183 GRXA Glutaredoxin, G 97.7 0.00014 3.1E-09 55.9 7.0 60 154-215 2-67 (86)
215 cd03419 GRX_GRXh_1_2_like Glut 97.7 0.00015 3.2E-09 54.5 7.0 58 154-216 2-64 (82)
216 TIGR00411 redox_disulf_1 small 97.7 4.1E-05 8.8E-10 57.5 3.7 55 83-137 2-57 (82)
217 PRK10877 protein disulfide iso 97.7 4.3E-05 9.2E-10 69.9 4.5 118 79-230 106-225 (232)
218 PRK10382 alkyl hydroperoxide r 97.7 0.00056 1.2E-08 60.4 11.3 77 149-225 30-141 (187)
219 cd02982 PDI_b'_family Protein 97.6 5.4E-05 1.2E-09 59.3 3.9 53 80-132 12-65 (103)
220 PF02966 DIM1: Mitosis protein 97.6 0.00094 2E-08 55.1 10.8 87 135-222 3-93 (133)
221 KOG0912|consensus 97.6 0.00042 9E-09 64.7 9.7 65 71-135 4-74 (375)
222 cd02991 UAS_ETEA UAS family, E 97.6 0.0008 1.7E-08 54.8 10.2 80 147-228 14-105 (116)
223 PRK13190 putative peroxiredoxi 97.5 0.0014 2.9E-08 58.7 11.6 77 149-225 26-139 (202)
224 PF13848 Thioredoxin_6: Thiore 97.5 0.0011 2.4E-08 57.3 10.7 82 129-211 74-159 (184)
225 cd02983 P5_C P5 family, C-term 97.5 0.0015 3.2E-08 54.3 10.6 82 133-214 3-92 (130)
226 PHA03050 glutaredoxin; Provisi 97.5 0.0004 8.7E-09 55.9 6.9 83 154-246 15-105 (108)
227 cd02066 GRX_family Glutaredoxi 97.5 0.00057 1.2E-08 49.1 7.0 57 154-217 2-62 (72)
228 cd02955 SSP411 TRX domain, SSP 97.5 0.00015 3.3E-09 59.8 4.4 54 70-123 5-62 (124)
229 cd03020 DsbA_DsbC_DsbG DsbA fa 97.4 0.00014 2.9E-09 64.6 4.3 112 80-226 77-191 (197)
230 KOG3425|consensus 97.4 0.0012 2.6E-08 53.5 8.9 73 140-212 12-104 (128)
231 TIGR02738 TrbB type-F conjugat 97.4 0.00023 5E-09 60.9 4.7 45 75-120 45-89 (153)
232 PRK13599 putative peroxiredoxi 97.4 0.0013 2.8E-08 59.5 9.8 75 150-224 28-140 (215)
233 cd02967 mauD Methylamine utili 97.4 0.00026 5.6E-09 56.5 4.6 37 79-115 20-57 (114)
234 PF11009 DUF2847: Protein of u 97.3 0.0019 4E-08 51.6 9.2 86 135-220 2-95 (105)
235 PF01216 Calsequestrin: Calseq 97.3 0.0016 3.6E-08 61.8 10.4 98 139-237 40-145 (383)
236 PTZ00137 2-Cys peroxiredoxin; 97.3 0.0026 5.6E-08 59.1 11.2 74 149-222 97-207 (261)
237 TIGR02190 GlrX-dom Glutaredoxi 97.3 0.0012 2.6E-08 49.8 7.4 60 150-216 6-68 (79)
238 PRK10606 btuE putative glutath 97.3 0.0011 2.5E-08 58.3 8.4 41 149-190 24-66 (183)
239 TIGR02189 GlrX-like_plant Glut 97.3 0.00059 1.3E-08 54.0 5.5 80 154-246 10-97 (99)
240 PRK00293 dipZ thiol:disulfide 97.2 0.00031 6.8E-09 72.3 4.8 59 63-121 453-518 (571)
241 cd03016 PRX_1cys Peroxiredoxin 97.2 0.0032 6.9E-08 56.3 10.5 75 152-226 28-140 (203)
242 TIGR00412 redox_disulf_2 small 97.2 0.00044 9.5E-09 51.8 3.7 35 84-118 2-37 (76)
243 cd03019 DsbA_DsbA DsbA family, 97.1 0.0044 9.5E-08 53.3 10.1 37 149-185 14-51 (178)
244 cd02981 PDI_b_family Protein D 97.1 0.0044 9.5E-08 48.0 9.2 72 135-213 2-74 (97)
245 PRK13189 peroxiredoxin; Provis 97.1 0.004 8.7E-08 56.5 10.2 77 149-225 34-148 (222)
246 PTZ00253 tryparedoxin peroxida 97.1 0.0057 1.2E-07 54.4 10.5 78 149-226 35-150 (199)
247 PF13905 Thioredoxin_8: Thiore 97.1 0.00094 2E-08 51.5 4.7 41 80-120 1-44 (95)
248 PRK13191 putative peroxiredoxi 97.0 0.0062 1.4E-07 55.0 10.4 78 149-226 32-147 (215)
249 cd03010 TlpA_like_DsbE TlpA-li 97.0 0.00089 1.9E-08 54.6 4.5 40 79-119 24-63 (127)
250 TIGR02194 GlrX_NrdH Glutaredox 97.0 0.0023 5.1E-08 47.1 6.2 61 154-223 1-64 (72)
251 cd03026 AhpF_NTD_C TRX-GRX-lik 97.0 0.00068 1.5E-08 52.5 3.3 58 80-137 12-69 (89)
252 cd02964 TryX_like_family Trypa 97.0 0.0011 2.5E-08 54.6 4.7 32 79-110 16-47 (132)
253 cd03027 GRX_DEP Glutaredoxin ( 96.9 0.0056 1.2E-07 45.1 7.9 57 154-217 3-63 (73)
254 TIGR02181 GRX_bact Glutaredoxi 96.9 0.0031 6.7E-08 47.1 6.3 56 154-216 1-60 (79)
255 PF13899 Thioredoxin_7: Thiore 96.9 0.0012 2.5E-08 50.1 4.0 31 72-102 9-39 (82)
256 KOG0911|consensus 96.9 0.0045 9.7E-08 55.6 8.0 147 63-216 2-205 (227)
257 cd03418 GRX_GRXb_1_3_like Glut 96.9 0.0064 1.4E-07 44.7 7.7 56 154-216 2-62 (75)
258 cd03009 TryX_like_TryX_NRX Try 96.9 0.0015 3.3E-08 53.6 4.6 32 79-110 17-48 (131)
259 KOG1731|consensus 96.9 0.00029 6.4E-09 70.7 0.4 59 62-121 39-102 (606)
260 TIGR02740 TraF-like TraF-like 96.8 0.0014 3E-08 61.3 4.5 41 80-120 166-207 (271)
261 cd02960 AGR Anterior Gradient 96.8 0.0034 7.3E-08 52.2 5.9 33 70-102 13-45 (130)
262 PRK15412 thiol:disulfide inter 96.8 0.0017 3.7E-08 57.0 4.5 40 78-119 66-105 (185)
263 cd02972 DsbA_family DsbA famil 96.7 0.005 1.1E-07 46.6 6.4 58 154-211 1-91 (98)
264 PRK10329 glutaredoxin-like pro 96.7 0.0078 1.7E-07 45.7 7.3 60 154-223 3-65 (81)
265 cd03008 TryX_like_RdCVF Trypar 96.7 0.0026 5.7E-08 54.0 4.8 31 79-109 24-54 (146)
266 COG0526 TrxA Thiol-disulfide i 96.7 0.0021 4.6E-08 49.4 4.0 41 80-120 32-73 (127)
267 cd02966 TlpA_like_family TlpA- 96.6 0.0026 5.5E-08 49.5 4.2 41 80-120 19-61 (116)
268 cd03029 GRX_hybridPRX5 Glutare 96.6 0.012 2.5E-07 43.2 7.4 56 154-216 3-61 (72)
269 KOG0914|consensus 96.6 0.0019 4.2E-08 57.6 3.5 73 59-131 121-197 (265)
270 TIGR00385 dsbE periplasmic pro 96.6 0.0033 7.1E-08 54.5 4.7 39 78-118 61-99 (173)
271 TIGR00365 monothiol glutaredox 96.5 0.023 4.9E-07 44.7 9.0 62 148-216 9-78 (97)
272 PRK14018 trifunctional thiored 96.5 0.0031 6.7E-08 64.0 4.5 40 79-118 55-96 (521)
273 cd03028 GRX_PICOT_like Glutare 96.3 0.019 4.1E-07 44.4 7.3 60 150-216 7-74 (90)
274 KOG2603|consensus 96.3 0.027 5.9E-07 52.9 9.5 63 149-211 59-134 (331)
275 COG4232 Thiol:disulfide interc 96.3 0.0063 1.4E-07 61.7 5.4 63 59-121 450-518 (569)
276 PRK11657 dsbG disulfide isomer 96.2 0.033 7.3E-07 51.5 9.8 77 149-227 116-243 (251)
277 PRK13728 conjugal transfer pro 96.2 0.0052 1.1E-07 54.0 4.1 36 84-120 73-108 (181)
278 COG1651 DsbG Protein-disulfide 96.2 0.024 5.1E-07 51.7 8.5 82 60-177 63-145 (244)
279 cd03023 DsbA_Com1_like DsbA fa 96.2 0.012 2.5E-07 49.0 5.8 41 149-189 4-44 (154)
280 cd03012 TlpA_like_DipZ_like Tl 96.1 0.0071 1.5E-07 49.4 4.3 40 79-118 22-63 (126)
281 PRK10638 glutaredoxin 3; Provi 96.0 0.036 7.8E-07 41.9 7.5 56 154-216 4-63 (83)
282 PRK03147 thiol-disulfide oxido 96.0 0.01 2.2E-07 50.9 4.7 42 79-120 60-103 (173)
283 PF05768 DUF836: Glutaredoxin- 96.0 0.024 5.2E-07 42.9 6.2 54 154-209 2-55 (81)
284 PRK10824 glutaredoxin-4; Provi 95.9 0.021 4.5E-07 46.5 5.9 91 144-246 8-106 (115)
285 cd03011 TlpA_like_ScsD_MtbDsbE 95.9 0.0072 1.6E-07 48.7 3.3 31 78-108 18-48 (123)
286 COG0695 GrxC Glutaredoxin and 95.8 0.037 8E-07 41.9 6.4 54 154-214 3-62 (80)
287 PF13098 Thioredoxin_2: Thiore 95.8 0.011 2.4E-07 46.9 3.7 30 78-107 3-32 (112)
288 PF08534 Redoxin: Redoxin; In 95.7 0.017 3.7E-07 48.1 4.8 42 79-120 27-71 (146)
289 cd00340 GSH_Peroxidase Glutath 95.7 0.015 3.2E-07 49.3 4.3 38 80-118 22-61 (152)
290 PRK12759 bifunctional gluaredo 95.6 0.037 8E-07 54.9 7.4 80 154-247 4-95 (410)
291 cd01659 TRX_superfamily Thiore 95.5 0.017 3.8E-07 38.9 3.4 40 84-123 1-40 (69)
292 TIGR03143 AhpF_homolog putativ 95.5 0.092 2E-06 54.0 10.1 74 151-224 367-442 (555)
293 cd03072 PDI_b'_ERp44 PDIb' fam 95.4 0.13 2.7E-06 41.5 8.8 66 145-212 11-82 (111)
294 PF07912 ERp29_N: ERp29, N-ter 95.2 0.47 1E-05 38.9 11.3 97 141-245 12-120 (126)
295 TIGR02540 gpx7 putative glutat 95.2 0.028 6E-07 47.5 4.4 40 80-119 22-63 (153)
296 cd03073 PDI_b'_ERp72_ERp57 PDI 95.1 0.11 2.3E-06 42.0 7.3 54 159-212 27-86 (111)
297 TIGR02661 MauD methylamine deh 95.1 0.024 5.2E-07 49.9 3.8 31 79-109 73-103 (189)
298 PTZ00056 glutathione peroxidas 95.0 0.031 6.8E-07 49.8 4.4 41 79-119 38-80 (199)
299 PF00578 AhpC-TSA: AhpC/TSA fa 95.0 0.045 9.8E-07 43.8 5.0 42 79-120 24-68 (124)
300 cd02969 PRX_like1 Peroxiredoxi 94.9 0.038 8.2E-07 47.5 4.6 42 79-120 24-67 (171)
301 PLN02919 haloacid dehalogenase 94.7 0.028 6E-07 62.2 4.0 39 79-117 419-459 (1057)
302 PLN02399 phospholipid hydroper 94.7 0.041 8.8E-07 50.5 4.5 41 79-119 98-140 (236)
303 cd03014 PRX_Atyp2cys Peroxired 94.7 0.044 9.5E-07 45.5 4.3 42 79-120 25-67 (143)
304 COG1225 Bcp Peroxiredoxin [Pos 94.6 0.44 9.6E-06 40.9 10.1 99 121-227 9-144 (157)
305 TIGR02196 GlrX_YruB Glutaredox 94.5 0.035 7.6E-07 39.9 2.9 33 84-121 2-34 (74)
306 PLN02412 probable glutathione 94.3 0.065 1.4E-06 46.2 4.5 41 79-119 28-70 (167)
307 PF01216 Calsequestrin: Calseq 93.9 0.98 2.1E-05 43.4 11.8 166 60-243 32-246 (383)
308 cd03023 DsbA_Com1_like DsbA fa 93.8 0.082 1.8E-06 43.8 4.2 38 79-116 4-41 (154)
309 cd02968 SCO SCO (an acronym fo 93.8 0.086 1.9E-06 43.4 4.3 33 79-111 21-54 (142)
310 PF13462 Thioredoxin_4: Thiore 93.8 0.17 3.6E-06 42.6 6.1 43 149-191 11-56 (162)
311 TIGR02180 GRX_euk Glutaredoxin 93.8 0.045 9.8E-07 40.8 2.2 35 84-119 1-35 (84)
312 PRK00522 tpx lipid hydroperoxi 93.7 0.092 2E-06 45.2 4.4 41 80-120 44-85 (167)
313 cd03067 PDI_b_PDIR_N PDIb fami 93.7 0.39 8.6E-06 38.0 7.3 86 135-221 4-97 (112)
314 cd03066 PDI_b_Calsequestrin_mi 93.6 0.75 1.6E-05 36.1 9.2 72 134-212 2-75 (102)
315 PF02114 Phosducin: Phosducin; 93.6 0.065 1.4E-06 50.0 3.5 34 130-163 123-159 (265)
316 cd03018 PRX_AhpE_like Peroxire 92.9 0.17 3.7E-06 42.0 4.6 39 81-119 29-70 (149)
317 PF13728 TraF: F plasmid trans 92.8 0.19 4.2E-06 45.4 5.2 44 80-123 120-164 (215)
318 PRK11200 grxA glutaredoxin 1; 92.5 0.14 3.1E-06 38.7 3.3 39 83-121 2-40 (85)
319 KOG0913|consensus 92.4 0.025 5.5E-07 51.1 -1.1 112 63-177 25-155 (248)
320 PRK10954 periplasmic protein d 92.2 0.19 4.2E-06 44.8 4.4 40 150-189 37-80 (207)
321 cd02970 PRX_like2 Peroxiredoxi 91.9 0.31 6.8E-06 40.1 5.1 40 80-119 23-65 (149)
322 PRK13703 conjugal pilus assemb 91.9 1.4 3E-05 40.7 9.7 45 80-124 143-188 (248)
323 KOG3171|consensus 91.6 0.17 3.6E-06 45.3 3.2 81 34-121 118-200 (273)
324 cd02958 UAS UAS family; UAS is 91.4 0.18 3.9E-06 40.3 2.9 27 76-102 13-39 (114)
325 TIGR02739 TraF type-F conjugat 91.2 0.4 8.6E-06 44.5 5.3 45 80-124 150-195 (256)
326 TIGR02200 GlrX_actino Glutared 91.1 0.14 3E-06 37.4 1.8 24 84-107 2-25 (77)
327 KOG1752|consensus 91.0 0.74 1.6E-05 36.7 6.0 58 154-216 16-78 (104)
328 cd03017 PRX_BCP Peroxiredoxin 90.8 0.43 9.2E-06 39.1 4.7 39 80-118 23-64 (140)
329 TIGR02183 GRXA Glutaredoxin, G 90.7 0.23 4.9E-06 37.9 2.8 37 84-120 2-38 (86)
330 cd02978 KaiB_like KaiB-like fa 90.7 0.99 2.1E-05 33.5 6.0 56 153-208 3-60 (72)
331 cd03015 PRX_Typ2cys Peroxiredo 90.7 0.37 8E-06 41.5 4.4 40 80-119 29-71 (173)
332 PF13848 Thioredoxin_6: Thiore 90.4 1.7 3.7E-05 37.1 8.4 66 168-244 8-75 (184)
333 PF13743 Thioredoxin_5: Thiore 90.4 1.3 2.9E-05 38.5 7.7 26 156-181 2-27 (176)
334 TIGR03137 AhpC peroxiredoxin. 90.4 0.38 8.2E-06 42.3 4.3 41 80-120 31-74 (187)
335 cd02971 PRX_family Peroxiredox 90.4 0.44 9.6E-06 38.9 4.5 41 79-119 21-64 (140)
336 cd03069 PDI_b_ERp57 PDIb famil 90.3 2.8 6.2E-05 32.9 8.9 70 134-211 2-72 (104)
337 PTZ00256 glutathione peroxidas 90.1 0.51 1.1E-05 41.2 4.8 40 80-119 40-82 (183)
338 KOG2640|consensus 89.9 0.085 1.8E-06 49.7 -0.3 87 149-237 75-163 (319)
339 PF02966 DIM1: Mitosis protein 89.0 1.3 2.8E-05 36.8 6.0 59 65-123 3-64 (133)
340 TIGR01626 ytfJ_HI0045 conserve 88.9 0.47 1E-05 41.8 3.6 30 79-108 58-87 (184)
341 PRK10606 btuE putative glutath 88.9 0.98 2.1E-05 39.7 5.7 39 80-119 25-65 (183)
342 cd03019 DsbA_DsbA DsbA family, 88.5 0.53 1.1E-05 40.2 3.7 33 79-111 14-46 (178)
343 PF03190 Thioredox_DsbH: Prote 88.4 0.34 7.4E-06 41.8 2.4 31 70-100 27-57 (163)
344 smart00594 UAS UAS domain. 87.9 0.53 1.1E-05 38.3 3.2 26 77-102 24-49 (122)
345 TIGR02654 circ_KaiB circadian 87.6 1.8 3.8E-05 33.4 5.6 71 151-222 3-75 (87)
346 PRK09301 circadian clock prote 87.5 1.7 3.7E-05 34.5 5.6 87 149-246 4-92 (103)
347 KOG3414|consensus 87.4 2.1 4.5E-05 35.3 6.2 47 65-111 6-54 (142)
348 COG1331 Highly conserved prote 86.7 1.4 2.9E-05 46.0 5.9 80 139-218 32-124 (667)
349 cd03020 DsbA_DsbC_DsbG DsbA fa 86.5 1.1 2.4E-05 39.4 4.7 25 150-174 77-101 (197)
350 PHA03075 glutaredoxin-like pro 86.3 1.2 2.7E-05 36.0 4.3 30 151-180 2-31 (123)
351 PRK09437 bcp thioredoxin-depen 86.2 1.3 2.8E-05 37.1 4.7 41 79-119 29-72 (154)
352 cd03031 GRX_GRX_like Glutaredo 86.1 2.8 6.1E-05 35.6 6.7 56 154-216 2-71 (147)
353 PF13462 Thioredoxin_4: Thiore 85.6 1.3 2.8E-05 37.0 4.5 31 79-109 11-41 (162)
354 KOG2501|consensus 85.0 1.7 3.7E-05 37.2 4.8 72 80-180 33-112 (157)
355 PRK10877 protein disulfide iso 84.9 1.2 2.6E-05 40.7 4.1 29 149-177 106-134 (232)
356 PRK10954 periplasmic protein d 84.9 0.91 2E-05 40.5 3.3 39 80-118 37-79 (207)
357 cd03419 GRX_GRXh_1_2_like Glut 84.2 0.67 1.5E-05 34.2 1.8 25 84-108 2-26 (82)
358 PF14595 Thioredoxin_9: Thiore 83.7 5.2 0.00011 33.0 7.1 38 81-118 42-81 (129)
359 cd03060 GST_N_Omega_like GST_N 83.6 5.8 0.00013 28.4 6.7 57 155-215 2-59 (71)
360 PF06491 Disulph_isomer: Disul 83.4 25 0.00053 29.2 11.3 108 133-241 17-133 (136)
361 PRK10382 alkyl hydroperoxide r 83.3 1.8 3.9E-05 38.2 4.4 41 80-120 31-74 (187)
362 cd02976 NrdH NrdH-redoxin (Nrd 82.7 1.7 3.7E-05 30.7 3.5 22 84-105 2-23 (73)
363 cd02974 AhpF_NTD_N Alkyl hydro 82.4 14 0.0003 28.8 8.7 63 150-223 18-81 (94)
364 PRK15317 alkyl hydroperoxide r 81.4 1.6 3.5E-05 44.5 3.9 55 81-135 117-171 (517)
365 PRK15000 peroxidase; Provision 81.2 2.3 5E-05 37.8 4.4 42 79-120 33-77 (200)
366 cd02066 GRX_family Glutaredoxi 81.2 1.6 3.5E-05 30.6 2.8 23 84-106 2-24 (72)
367 PF00837 T4_deiodinase: Iodoth 80.4 32 0.00068 31.6 11.4 149 63-243 83-236 (237)
368 PF13192 Thioredoxin_3: Thiore 80.4 2 4.4E-05 31.7 3.2 34 85-119 3-36 (76)
369 cd02972 DsbA_family DsbA famil 79.9 1.6 3.5E-05 32.5 2.6 26 84-109 1-26 (98)
370 PF07689 KaiB: KaiB domain; I 79.4 1 2.3E-05 34.3 1.3 52 157-208 3-56 (82)
371 COG2118 DNA-binding protein [G 79.3 2.1 4.6E-05 34.4 3.1 21 30-50 1-21 (116)
372 KOG3425|consensus 79.3 4.8 0.0001 32.9 5.1 49 79-127 24-81 (128)
373 KOG2507|consensus 79.1 15 0.00033 36.3 9.4 84 145-228 13-103 (506)
374 cd03035 ArsC_Yffb Arsenate Red 78.8 4.5 9.8E-05 32.1 4.9 35 154-193 1-35 (105)
375 cd03051 GST_N_GTT2_like GST_N 78.8 9.7 0.00021 26.9 6.4 52 155-209 2-57 (74)
376 PHA03050 glutaredoxin; Provisi 78.4 2.7 5.8E-05 33.7 3.5 27 83-109 14-40 (108)
377 PTZ00253 tryparedoxin peroxida 77.8 3.4 7.4E-05 36.5 4.4 41 80-120 36-79 (199)
378 cd03037 GST_N_GRX2 GST_N famil 76.9 9.7 0.00021 27.1 5.9 53 156-214 3-57 (71)
379 cd02977 ArsC_family Arsenate R 76.6 3.2 6.9E-05 32.6 3.5 34 154-192 1-34 (105)
380 cd03027 GRX_DEP Glutaredoxin ( 76.6 2.5 5.5E-05 30.7 2.7 32 84-120 3-34 (73)
381 cd03013 PRX5_like Peroxiredoxi 76.3 7 0.00015 33.1 5.7 52 150-201 29-88 (155)
382 cd03036 ArsC_like Arsenate Red 75.8 2 4.4E-05 34.4 2.1 34 155-193 2-35 (111)
383 cd03068 PDI_b_ERp72 PDIb famil 75.2 23 0.0005 28.0 8.1 73 134-213 2-76 (107)
384 COG0278 Glutaredoxin-related p 74.8 12 0.00027 29.6 6.1 55 159-217 27-83 (105)
385 cd02981 PDI_b_family Protein D 74.4 7.4 0.00016 29.5 5.0 50 65-117 2-52 (97)
386 PRK11657 dsbG disulfide isomer 73.5 4.1 8.8E-05 37.6 3.8 30 79-108 116-145 (251)
387 cd00570 GST_N_family Glutathio 73.1 3.8 8.2E-05 28.1 2.8 51 156-209 3-55 (71)
388 PF00462 Glutaredoxin: Glutare 72.9 4.1 8.9E-05 28.3 2.9 22 84-105 1-22 (60)
389 TIGR03140 AhpF alkyl hydropero 72.5 3.9 8.4E-05 41.7 3.8 55 81-135 118-172 (515)
390 PF00837 T4_deiodinase: Iodoth 72.0 6.3 0.00014 36.1 4.5 51 142-192 94-145 (237)
391 TIGR02190 GlrX-dom Glutaredoxi 71.7 4.1 8.9E-05 30.2 2.8 26 80-105 6-31 (79)
392 cd03040 GST_N_mPGES2 GST_N fam 71.7 12 0.00026 27.1 5.3 51 154-210 2-54 (77)
393 TIGR01617 arsC_related transcr 71.2 7.8 0.00017 31.1 4.6 35 155-194 2-36 (117)
394 PRK13599 putative peroxiredoxi 70.8 7.9 0.00017 34.8 5.0 41 80-120 28-71 (215)
395 cd03032 ArsC_Spx Arsenate Redu 70.5 17 0.00037 29.0 6.4 34 154-192 2-35 (115)
396 cd03045 GST_N_Delta_Epsilon GS 70.2 20 0.00044 25.4 6.3 51 155-208 2-56 (74)
397 cd03041 GST_N_2GST_N GST_N fam 70.1 21 0.00045 26.0 6.4 54 155-213 3-60 (77)
398 PF06053 DUF929: Domain of unk 69.1 12 0.00026 34.6 5.7 60 146-211 54-113 (249)
399 PRK12559 transcriptional regul 68.9 15 0.00032 30.4 5.8 35 154-193 2-36 (131)
400 cd03016 PRX_1cys Peroxiredoxin 68.2 7.6 0.00017 34.4 4.3 39 82-120 28-68 (203)
401 PTZ00137 2-Cys peroxiredoxin; 67.5 8.3 0.00018 35.9 4.5 42 79-120 97-141 (261)
402 PRK01655 spxA transcriptional 67.2 9.6 0.00021 31.5 4.4 35 154-193 2-36 (131)
403 PF01323 DSBA: DSBA-like thior 66.7 10 0.00022 32.5 4.8 37 153-189 1-37 (193)
404 cd03059 GST_N_SspA GST_N famil 66.5 24 0.00053 24.9 6.0 51 155-208 2-53 (73)
405 PF06110 DUF953: Eukaryotic pr 66.0 14 0.0003 30.2 4.9 42 79-120 18-67 (119)
406 TIGR02189 GlrX-like_plant Glut 64.8 5.9 0.00013 31.0 2.5 25 82-106 8-32 (99)
407 PRK13190 putative peroxiredoxi 63.9 11 0.00024 33.4 4.4 41 80-120 27-70 (202)
408 PF13417 GST_N_3: Glutathione 63.9 49 0.0011 23.8 7.3 56 156-216 1-57 (75)
409 cd03055 GST_N_Omega GST_N fami 63.5 35 0.00075 25.7 6.6 53 154-209 19-72 (89)
410 COG3634 AhpF Alkyl hydroperoxi 63.4 1.3E+02 0.0029 29.5 11.7 134 82-217 20-181 (520)
411 PF02630 SCO1-SenC: SCO1/SenC; 63.3 55 0.0012 28.1 8.6 113 79-221 51-173 (174)
412 COG1651 DsbG Protein-disulfide 62.1 14 0.0003 33.4 4.8 38 151-188 85-122 (244)
413 KOG2640|consensus 61.7 2.2 4.7E-05 40.4 -0.6 126 79-221 75-204 (319)
414 COG2143 Thioredoxin-related pr 61.7 35 0.00076 29.4 6.7 84 72-157 34-122 (182)
415 PRK10329 glutaredoxin-like pro 58.8 14 0.00029 27.8 3.5 33 84-121 3-35 (81)
416 cd03056 GST_N_4 GST_N family, 58.1 62 0.0013 22.6 7.4 56 155-215 2-61 (73)
417 PF01323 DSBA: DSBA-like thior 57.9 13 0.00029 31.8 3.8 30 84-113 2-31 (193)
418 PRK13189 peroxiredoxin; Provis 56.7 20 0.00043 32.4 4.9 41 80-120 35-78 (222)
419 PRK13191 putative peroxiredoxi 56.5 22 0.00049 31.9 5.1 41 80-120 33-76 (215)
420 COG3019 Predicted metal-bindin 56.4 28 0.00061 29.3 5.2 74 151-242 25-102 (149)
421 COG3531 Predicted protein-disu 56.3 16 0.00035 32.5 3.9 25 84-108 4-28 (212)
422 PF09673 TrbC_Ftype: Type-F co 55.3 76 0.0016 25.4 7.5 41 168-212 40-80 (113)
423 TIGR02194 GlrX_NrdH Glutaredox 54.7 9.5 0.00021 27.5 2.0 20 85-104 2-21 (72)
424 KOG4752|consensus 54.3 26 0.00056 20.0 3.2 18 36-53 3-20 (26)
425 PRK13344 spxA transcriptional 54.0 38 0.00082 28.0 5.7 35 154-193 2-36 (132)
426 PRK11509 hydrogenase-1 operon 53.3 24 0.00052 29.3 4.4 66 71-137 25-95 (132)
427 TIGR02742 TrbC_Ftype type-F co 52.9 36 0.00077 28.3 5.3 27 188-214 56-82 (130)
428 TIGR00365 monothiol glutaredox 52.3 20 0.00044 27.8 3.6 17 89-105 24-40 (97)
429 cd03418 GRX_GRXb_1_3_like Glut 52.2 9.1 0.0002 27.5 1.5 22 84-105 2-23 (75)
430 PF09822 ABC_transp_aux: ABC-t 51.9 1.9E+02 0.0042 26.5 11.1 90 151-241 25-143 (271)
431 cd03029 GRX_hybridPRX5 Glutare 51.4 15 0.00032 26.4 2.6 22 84-105 3-24 (72)
432 TIGR02181 GRX_bact Glutaredoxi 50.5 8.9 0.00019 28.1 1.3 22 85-106 2-23 (79)
433 PF08806 Sep15_SelM: Sep15/Sel 50.0 10 0.00023 28.5 1.6 35 203-244 41-76 (78)
434 COG0695 GrxC Glutaredoxin and 50.0 5.7 0.00012 29.8 0.2 21 84-104 3-23 (80)
435 PF10587 EF-1_beta_acid: Eukar 49.6 18 0.00039 21.7 2.2 18 31-48 9-26 (28)
436 PRK04239 hypothetical protein; 49.1 15 0.00032 29.7 2.3 18 34-51 2-19 (110)
437 cd02983 P5_C P5 family, C-term 47.9 44 0.00095 27.5 5.2 67 63-129 3-75 (130)
438 cd03022 DsbA_HCCA_Iso DsbA fam 47.4 21 0.00045 30.6 3.3 27 194-225 158-184 (192)
439 TIGR00014 arsC arsenate reduct 46.8 48 0.001 26.5 5.1 33 155-192 2-34 (114)
440 PHA03075 glutaredoxin-like pro 46.0 71 0.0015 26.1 5.8 31 81-111 2-32 (123)
441 KOG3431|consensus 45.3 17 0.00036 29.7 2.1 19 32-50 2-20 (129)
442 cd03052 GST_N_GDAP1 GST_N fami 42.7 1.3E+02 0.0027 21.7 7.3 56 155-215 2-61 (73)
443 COG0386 BtuE Glutathione perox 42.6 1.9E+02 0.0042 24.8 8.2 123 79-228 24-152 (162)
444 cd03033 ArsC_15kD Arsenate Red 41.8 62 0.0014 25.9 5.1 34 154-192 2-35 (113)
445 cd03025 DsbA_FrnE_like DsbA fa 41.7 30 0.00066 29.6 3.5 27 154-180 3-29 (193)
446 PRK10638 glutaredoxin 3; Provi 41.4 28 0.0006 25.8 2.8 22 84-105 4-25 (83)
447 COG2761 FrnE Predicted dithiol 41.0 37 0.00081 30.9 3.9 28 84-111 8-35 (225)
448 COG1519 KdtA 3-deoxy-D-manno-o 40.9 2.3E+02 0.0051 28.2 9.7 112 81-218 48-159 (419)
449 PRK10824 glutaredoxin-4; Provi 40.3 28 0.0006 28.2 2.8 17 90-106 28-44 (115)
450 cd03034 ArsC_ArsC Arsenate Red 40.2 67 0.0015 25.5 5.0 33 155-192 2-34 (112)
451 cd03024 DsbA_FrnE DsbA family, 39.7 37 0.0008 29.3 3.7 25 86-110 3-27 (201)
452 PF02630 SCO1-SenC: SCO1/SenC; 38.7 56 0.0012 28.1 4.7 51 149-199 51-109 (174)
453 PF05768 DUF836: Glutaredoxin- 38.5 17 0.00037 27.0 1.2 39 84-123 2-40 (81)
454 PF04592 SelP_N: Selenoprotein 38.0 44 0.00095 30.6 3.9 43 149-191 25-72 (238)
455 cd03028 GRX_PICOT_like Glutare 37.7 30 0.00066 26.2 2.5 17 90-106 21-37 (90)
456 PF05988 DUF899: Bacterial pro 35.9 3.3E+02 0.0072 24.6 10.4 82 96-188 24-113 (211)
457 PF04134 DUF393: Protein of un 35.7 46 0.001 26.1 3.4 57 157-214 2-61 (114)
458 PF11287 DUF3088: Protein of u 33.9 69 0.0015 25.9 4.0 51 162-212 24-77 (112)
459 PF11009 DUF2847: Protein of u 32.8 76 0.0016 25.3 4.1 55 66-120 3-60 (105)
460 PRK12759 bifunctional gluaredo 31.0 46 0.001 33.0 3.2 32 84-120 4-35 (410)
461 KOG2603|consensus 30.6 1.4E+02 0.0029 28.7 6.0 66 63-129 41-122 (331)
462 cd03066 PDI_b_Calsequestrin_mi 29.5 1.3E+02 0.0028 23.1 5.0 49 64-115 2-52 (102)
463 COG1579 Zn-ribbon protein, pos 29.0 4.6E+02 0.01 24.1 9.2 27 73-99 180-207 (239)
464 PF03960 ArsC: ArsC family; I 28.3 2E+02 0.0043 22.5 6.0 31 157-192 1-31 (110)
465 COG1999 Uncharacterized protei 27.9 4.1E+02 0.0089 23.5 8.5 125 72-224 59-192 (207)
466 cd03053 GST_N_Phi GST_N family 27.1 2.3E+02 0.0049 19.9 7.4 56 154-214 2-61 (76)
467 cd02977 ArsC_family Arsenate R 27.1 51 0.0011 25.6 2.3 20 85-104 2-21 (105)
468 cd03069 PDI_b_ERp57 PDIb famil 26.9 1.3E+02 0.0029 23.2 4.7 49 64-115 2-51 (104)
469 PRK13730 conjugal transfer pil 26.2 90 0.0019 28.0 3.8 34 191-225 150-183 (212)
470 PRK10853 putative reductase; P 26.0 1.5E+02 0.0032 23.9 4.8 34 154-192 2-35 (118)
471 cd03025 DsbA_FrnE_like DsbA fa 25.9 67 0.0015 27.4 3.0 26 84-109 3-28 (193)
472 PF04413 Glycos_transf_N: 3-De 25.5 2.2E+02 0.0049 24.7 6.3 104 83-210 22-125 (186)
473 KOG1752|consensus 25.0 67 0.0015 25.5 2.6 23 82-104 14-36 (104)
474 COG4545 Glutaredoxin-related p 24.9 64 0.0014 24.3 2.2 56 155-216 5-76 (85)
475 COG1422 Predicted membrane pro 24.7 2.8E+02 0.006 24.8 6.5 45 8-52 72-117 (201)
476 COG4575 ElaB Uncharacterized c 24.1 3.6E+02 0.0079 21.5 6.4 46 7-52 11-56 (104)
477 cd03013 PRX5_like Peroxiredoxi 23.8 4.3E+02 0.0093 22.0 10.8 32 79-110 29-61 (155)
478 cd02990 UAS_FAF1 UAS family, F 23.7 4.3E+02 0.0094 22.0 11.1 79 148-228 19-125 (136)
479 PF14812 PBP1_TM: Transmembran 23.5 27 0.00058 26.5 0.0 13 299-311 8-20 (81)
480 PRK10026 arsenate reductase; P 23.4 2.1E+02 0.0045 24.0 5.4 34 154-192 4-37 (141)
481 COG1999 Uncharacterized protei 23.3 3.3E+02 0.0072 24.2 7.0 54 148-201 65-127 (207)
482 KOG2767|consensus 22.9 71 0.0015 31.0 2.7 26 221-246 78-103 (400)
483 cd03058 GST_N_Tau GST_N family 22.2 2E+02 0.0044 20.2 4.6 54 156-214 3-58 (74)
484 cd03035 ArsC_Yffb Arsenate Red 21.8 75 0.0016 25.0 2.3 20 85-104 2-21 (105)
485 PF10234 Cluap1: Clusterin-ass 21.6 3E+02 0.0065 25.8 6.5 54 4-57 162-217 (267)
486 cd03068 PDI_b_ERp72 PDIb famil 21.2 2.2E+02 0.0048 22.3 4.9 49 64-115 2-52 (107)
487 COG1382 GimC Prefoldin, chaper 21.2 4.2E+02 0.0092 21.6 6.5 19 36-54 93-111 (119)
488 PF13743 Thioredoxin_5: Thiore 21.2 89 0.0019 26.9 2.8 26 86-111 2-27 (176)
489 PF03670 UPF0184: Uncharacteri 20.9 2.3E+02 0.005 21.6 4.6 27 13-43 42-68 (83)
490 KOG2792|consensus 20.8 5.5E+02 0.012 24.1 7.8 43 149-191 138-188 (280)
491 TIGR01616 nitro_assoc nitrogen 20.6 2.5E+02 0.0053 23.0 5.2 34 154-192 3-36 (126)
No 1
>KOG1672|consensus
Probab=100.00 E-value=2.2e-44 Score=308.65 Aligned_cols=199 Identities=49% Similarity=0.845 Sum_probs=184.0
Q ss_pred ChhhHHHHHHHHHHHHHHhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCCchhhhhhhcCC
Q psy6451 1 MESVLQDTVLNVAKNVEKQIDEEIYRLENLDLDSIEKLREDHLKKLKAKAKRNQELKALGHGEYEEIPDEKKFFDLCKKS 80 (332)
Q Consensus 1 ~~~~~~~~~~~~~~~~e~~~d~~~~~l~~~d~~~l~~~r~~Rl~el~~~~~~~~~~~~~g~G~~~ev~~e~~f~~~~~~~ 80 (332)
+++.++.+++.+++++++++|++++.|+++|+++++..|++||++|+..+++++.|...|||.|.+|.+|++|++.++++
T Consensus 5 ~~~~~~~qvl~~~ka~~~~~d~e~~~le~~d~~dle~lr~qRl~~lkk~~~kr~~~~~~GhG~y~ev~~Ekdf~~~~~kS 84 (211)
T KOG1672|consen 5 AAKILEKQVLTAAKAVEEQLDEELDKLENMDEDDLEVLREQRLEQLKKEQEKRKEWLSKGHGEYEEVASEKDFFEEVKKS 84 (211)
T ss_pred hhhhhhHHHHHHHHHHHHHHhHHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhhcC
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCcccccCChhHHHHHhccCCcEEEEEecC
Q psy6451 81 PNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYEEIPDEKKFFDLCKKSPNMVVHFYKD 160 (332)
Q Consensus 81 ~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ei~~e~~~~~~~~~~~~VvV~Fya~ 160 (332)
..||||||+|.+.+||+|+.||
T Consensus 85 ~kVVcHFY~~~f~RCKimDkhL---------------------------------------------------------- 106 (211)
T KOG1672|consen 85 EKVVCHFYRPEFFRCKIMDKHL---------------------------------------------------------- 106 (211)
T ss_pred ceEEEEEEcCCCcceehHHHHH----------------------------------------------------------
Confidence 9999999999999999999998
Q ss_pred CChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeeeeEecccCcchhhHhHHHHHHHHH
Q psy6451 161 GSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELGNCADFSTEMLEWRI 240 (332)
Q Consensus 161 wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G~~~~~~~~~f~~~~Le~~L 240 (332)
+.||++|.+++|++||++++|+|+.+++|..+||+.+|++|..+.+++||..+|+.++|.++.||++|
T Consensus 107 ------------e~LAk~h~eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL 174 (211)
T KOG1672|consen 107 ------------EILAKRHVETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRL 174 (211)
T ss_pred ------------HHHHHhcccceEEEEecccCceeeeeeeeeEeeeEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHH
Confidence 55555667778888888888888999999999999999999999999999999999999999999999
Q ss_pred HHcCCccccCCCCCCCchhhhhhhhhhhhcceEeec
Q psy6451 241 AQAGVIDYEGDLFNPPDIKKKQKKRMIEKKKIIRGR 276 (332)
Q Consensus 241 ~~~g~l~~~~~~~~~P~~~~~~~~~~~~~~~~i~g~ 276 (332)
..+|+|.+.+.+..+|.... ..++.+++.
T Consensus 175 ~~S~vi~~~~~~s~~~~~~~-------~~~~~ir~~ 203 (211)
T KOG1672|consen 175 AKSGVIDYTGELSKPKKVNT-------SIRRSVRSS 203 (211)
T ss_pred hhccceecccccccCccchh-------hHHHHhhcC
Confidence 99999999999988876653 456677764
No 2
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=100.00 E-value=7.3e-33 Score=241.98 Aligned_cols=162 Identities=23% Similarity=0.319 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHhhHHHHHHhcCCChH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCCchhhhhhhcCCCcEE
Q psy6451 8 TVLNVAKNVEKQIDEEIYRLENLDLD---SIEKLREDHLKKLKAKAKRNQELKALGHGEYEEIPDEKKFFDLCKKSPNMV 84 (332)
Q Consensus 8 ~~~~~~~~~e~~~d~~~~~l~~~d~~---~l~~~r~~Rl~el~~~~~~~~~~~~~g~G~~~ev~~e~~f~~~~~~~~~vv 84 (332)
.++.+.+.-++. +++++++|++|++ +|++||++||+||+++..++ ..||.|.+|+++.+|.+.+.++
T Consensus 11 gv~~d~~~~~~~-~~~~~~~d~~~~~~e~~l~~~R~~R~~el~~~~~~~-----~~~g~v~ei~~~~~f~~~v~~~---- 80 (175)
T cd02987 11 GVINDWRKFKQL-KESEQEDDDDDEDKEEFLQQYREQRMQEMHAKLPFG-----RRFGKVYELDSGEQFLDAIDKE---- 80 (175)
T ss_pred hhHHHHHHHHhh-hchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhcccc-----CCCCeEEEcCCHHHHHHHHHhc----
Confidence 355555554433 7777788887776 99999999999999975443 3599999998778888776532
Q ss_pred EEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCcccccCChhHHHHHhccCCcEEEEEecCCChh
Q psy6451 85 VHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVN 164 (332)
Q Consensus 85 VhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ei~~e~~~~~~~~~~~~VvV~Fya~wc~~ 164 (332)
.++.+|||+||+|||++
T Consensus 81 ---------------------------------------------------------------~~~~~VVV~Fya~wc~~ 97 (175)
T cd02987 81 ---------------------------------------------------------------GKDTTVVVHIYEPGIPG 97 (175)
T ss_pred ---------------------------------------------------------------CCCcEEEEEEECCCCch
Confidence 12357888889999999
Q ss_pred hHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeeeeEecccCcchhhHhHHHHHHHHHHHcC
Q psy6451 165 CKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELGNCADFSTEMLEWRIAQAG 244 (332)
Q Consensus 165 Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G~~~~~~~~~f~~~~Le~~L~~~g 244 (332)
|+.|.|+|+.||.+|+.++|++||++.+ .++.+|+|.++||+++|++|+.+.+++|+...++. +|+++.||++|.++|
T Consensus 98 Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~-~f~~~~le~~L~~~g 175 (175)
T cd02987 98 CAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPALLVYKGGELIGNFVRVTEDLGE-DFDAEDLESFLVEYG 175 (175)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCC-CCCHHHHHHHHHhcC
Confidence 9999999999999999999999999988 89999999999999999999999999999998775 999999999999876
No 3
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.97 E-value=4e-31 Score=234.01 Aligned_cols=154 Identities=27% Similarity=0.481 Sum_probs=128.3
Q ss_pred HHHHHHhhHHHHHHhcCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCCchhhhhhhcCCCcEEEEEccC
Q psy6451 13 AKNVEKQIDEEIYRLENLDLD--SIEKLREDHLKKLKAKAKRNQELKALGHGEYEEIPDEKKFFDLCKKSPNMVVHFYKD 90 (332)
Q Consensus 13 ~~~~e~~~d~~~~~l~~~d~~--~l~~~r~~Rl~el~~~~~~~~~~~~~g~G~~~ev~~e~~f~~~~~~~~~vvVhFy~p 90 (332)
.+.+|+..+++++.++++++| +|++||++||+||++..++ .+||.|.+|+ ..+|...|..+
T Consensus 37 ~~~~e~~~~~el~~~~d~~~d~~~Le~yR~kRl~el~~~~~~------~~~G~v~eis-~~~f~~eV~~a---------- 99 (192)
T cd02988 37 ENALEKKLLDELDEELDEEEDDRFLEEYRRKRLAEMKALAEK------SKFGEVYEIS-KPDYVREVTEA---------- 99 (192)
T ss_pred HhHhhhccHHHHHHhhcccccHHHHHHHHHHHHHHHHHhhhh------CCCCeEEEeC-HHHHHHHHHhc----------
Confidence 345666667777777665444 8999999999999996543 4799999996 45666444221
Q ss_pred CChhhhhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCcccccCChhHHHHHhccCCcEEEEEecCCChhhHHHHH
Q psy6451 91 GSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDE 170 (332)
Q Consensus 91 ~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ei~~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~ 170 (332)
.++.+||||||++||++|+.|+|
T Consensus 100 ---------------------------------------------------------s~~~~VVV~Fya~wc~~C~~m~~ 122 (192)
T cd02988 100 ---------------------------------------------------------SKDTWVVVHLYKDGIPLCRLLNQ 122 (192)
T ss_pred ---------------------------------------------------------CCCCEEEEEEECCCCchHHHHHH
Confidence 12357888888889999999999
Q ss_pred HHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeeeeEecccCcchhhHhHHHHHHHHHHHcC
Q psy6451 171 HMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELGNCADFSTEMLEWRIAQAG 244 (332)
Q Consensus 171 ~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G~~~~~~~~~f~~~~Le~~L~~~g 244 (332)
+|+.||.+|+.++|++||++.+ +.+|+|.++||+++|++|+.+.+++|+.++||. +|+.+.||++|.++|
T Consensus 123 ~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~-~~~~~~lE~~L~~~g 192 (192)
T cd02988 123 HLSELARKFPDTKFVKIISTQC---IPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGM-NTTMEDLEWLLVQVG 192 (192)
T ss_pred HHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCCEEEEEECCEEEEEEeCchhhCCC-CCCHHHHHHHHHhcC
Confidence 9999999999999999999976 689999999999999999999999999999986 999999999999876
No 4
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.95 E-value=4.9e-27 Score=217.03 Aligned_cols=147 Identities=32% Similarity=0.501 Sum_probs=106.6
Q ss_pred HHHhc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCCchhhhhhhcCC---CcEEEEEccCCChhhhhh
Q psy6451 24 IYRLE--NLDLDSIEKLREDHLKKLKAKAKRNQELKALGHGEYEEIPDEKKFFDLCKKS---PNMVVHFYKDGSVNCKIL 98 (332)
Q Consensus 24 ~~~l~--~~d~~~l~~~r~~Rl~el~~~~~~~~~~~~~g~G~~~ev~~e~~f~~~~~~~---~~vvVhFy~p~~~~Ck~~ 98 (332)
++.++ .+|+++|++||++||+||+++..+. ..||.|.+|++++.|.++|.+. .+||||||.|.++.|++
T Consensus 90 ~e~~~~d~eDeefL~~yR~qRm~El~~~~~~~-----~~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~- 163 (265)
T PF02114_consen 90 LEELEDDEEDEEFLEQYREQRMQELKQKLQKG-----PRFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEI- 163 (265)
T ss_dssp HHHHCC----HHHHHHHHHHHHHHHHHHH------------SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHH-
T ss_pred HhhhhcccccHHHHHHHHHHHHHHHHHHHHhC-----CcCceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHH-
Confidence 44443 3466799999999999998765442 2499999998888999988653 33666666665555555
Q ss_pred HHHHHHHHHhhhhceeeecccCCCCcccccCCCCcccccCChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHH
Q psy6451 99 DEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKK 178 (332)
Q Consensus 99 ~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ei~~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~ 178 (332)
|+.+|..||.+
T Consensus 164 ---------------------------------------------------------------------mn~~L~~LA~k 174 (265)
T PF02114_consen 164 ---------------------------------------------------------------------MNSCLECLARK 174 (265)
T ss_dssp ---------------------------------------------------------------------HHHHHHHHHHH
T ss_pred ---------------------------------------------------------------------HHHHHHHHHHh
Confidence 45555778888
Q ss_pred cCCceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeeeeEecccCcchhhHhHHHHHHHHHHHcCCcc
Q psy6451 179 HLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELGNCADFSTEMLEWRIAQAGVID 247 (332)
Q Consensus 179 ~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G~~~~~~~~~f~~~~Le~~L~~~g~l~ 247 (332)
||.++|++|.+..++ ++.+|++.++|||++|++|.++.+++|+...++ .+|.+..||++|.++|+|+
T Consensus 175 yp~vKFvkI~a~~~~-~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g-~df~~~dlE~~L~~~G~l~ 241 (265)
T PF02114_consen 175 YPEVKFVKIRASKCP-ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLG-DDFFTEDLEAFLIEYGVLP 241 (265)
T ss_dssp -TTSEEEEEEECGCC-TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT--TT--HHHHHHHHHTTTSSS
T ss_pred CCceEEEEEehhccC-cccCCcccCCCEEEEEECCEEEEeEEehHHhcC-CCCCHHHHHHHHHHcCCCC
Confidence 899999999999887 788999999999999999999999999998887 6899999999999999995
No 5
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.92 E-value=1.4e-24 Score=176.67 Aligned_cols=112 Identities=56% Similarity=0.956 Sum_probs=108.8
Q ss_pred CCCCcccccCChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEE
Q psy6451 129 QGHGEYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLT 208 (332)
Q Consensus 129 ~g~g~~~ei~~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~ 208 (332)
.|+|++.+|++.++|.+.+.++++|||+||+|||++|+.|.|.|++|+++|++++|++||+++.+.++++|+|.++||++
T Consensus 1 ~~~g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l 80 (113)
T cd02989 1 KGHGKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVI 80 (113)
T ss_pred CCCCCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeeeeeEecccCcchhhHhHHHHHHHHH
Q psy6451 209 LVKDSVTKDYIVGFTELGNCADFSTEMLEWRI 240 (332)
Q Consensus 209 ~~~~G~~v~~~~G~~~~~~~~~f~~~~Le~~L 240 (332)
+|++|+.+.++.|+.+.++.+++..+.||++|
T Consensus 81 ~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 81 LFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 99999999999999999998999999999987
No 6
>KOG3170|consensus
Probab=99.89 E-value=3.5e-22 Score=172.41 Aligned_cols=146 Identities=27% Similarity=0.425 Sum_probs=123.4
Q ss_pred cCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCCchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHH
Q psy6451 28 ENLDLD-SIEKLREDHLKKLKAKAKRNQELKALGHGEYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLC 106 (332)
Q Consensus 28 ~~~d~~-~l~~~r~~Rl~el~~~~~~~~~~~~~g~G~~~ev~~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA 106 (332)
++.|++ +|+.||.+||+|++....+.. ||+|.+|+ ..+|..-|+..
T Consensus 62 ed~dDerfLE~YR~kRl~E~r~~~~k~k------fG~V~~IS-g~dyv~EVT~A-------------------------- 108 (240)
T KOG3170|consen 62 EDSDDERFLEMYRIKRLAEWRATAEKAK------FGEVFPIS-GPDYVKEVTKA-------------------------- 108 (240)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhc------ccceeecc-chHHHHHHHhc--------------------------
Confidence 334566 899999999999999887754 99999995 45665444321
Q ss_pred HhhhhceeeecccCCCCcccccCCCCcccccCChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEE
Q psy6451 107 KKHLETRFIKLNVERAPFLTGQQGHGEYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIK 186 (332)
Q Consensus 107 ~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ei~~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~k 186 (332)
+.+-+||||+|...-+.|+.+..+|+.||.+||.++|++
T Consensus 109 -----------------------------------------s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVk 147 (240)
T KOG3170|consen 109 -----------------------------------------SEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVK 147 (240)
T ss_pred -----------------------------------------cCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEe
Confidence 346778888888888888888888899999999999999
Q ss_pred EECcCChHHHHhCCcccCcEEEEEeCCeeeeeEecccCcchhhHhHHHHHHHHHHHcCCccccCC
Q psy6451 187 LNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELGNCADFSTEMLEWRIAQAGVIDYEGD 251 (332)
Q Consensus 187 Vd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G~~~~~~~~~f~~~~Le~~L~~~g~l~~~~~ 251 (332)
+-++.| ..+|+-.++||+++|..|.+..+++|+..+||+ +.+.+.++++|.+.|++..+++
T Consensus 148 i~at~c---IpNYPe~nlPTl~VY~~G~lk~q~igll~lgG~-n~t~ed~e~~L~qaga~l~d~~ 208 (240)
T KOG3170|consen 148 IPATTC---IPNYPESNLPTLLVYHHGALKKQMIGLLELGGM-NLTMEDVEDFLVQAGAALTDGD 208 (240)
T ss_pred cccccc---cCCCcccCCCeEEEeecchHHhheehhhhhcCC-cCCHHHHHHHHHhccccccccc
Confidence 999998 789999999999999999999999999999995 9999999999999996644444
No 7
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.89 E-value=8.9e-23 Score=165.75 Aligned_cols=108 Identities=49% Similarity=0.778 Sum_probs=100.8
Q ss_pred CCCcccccCChhHHHHHhccC---CcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcE
Q psy6451 130 GHGEYEEIPDEKKFFDLCKKS---PNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPT 206 (332)
Q Consensus 130 g~g~~~ei~~e~~~~~~~~~~---~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PT 206 (332)
++|.+.++++ ++|.+.+... .+|||+||+|||++|+.|.|.|+.++.+|++++|++||++++ .++++|+|.++||
T Consensus 2 ~~g~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt 79 (113)
T cd02957 2 GFGEVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPT 79 (113)
T ss_pred CCceEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCE
Confidence 5788889988 7888887654 899999999999999999999999999999999999999999 9999999999999
Q ss_pred EEEEeCCeeeeeEecccCcchhhHhHHHHHHHHH
Q psy6451 207 LTLVKDSVTKDYIVGFTELGNCADFSTEMLEWRI 240 (332)
Q Consensus 207 l~~~~~G~~v~~~~G~~~~~~~~~f~~~~Le~~L 240 (332)
+++|++|+.+.++.|..+.++ ..|..+.|+.+|
T Consensus 80 ~~~f~~G~~v~~~~G~~~~~~-~~~~~~~l~~~l 112 (113)
T cd02957 80 LLVYKNGELIDNIVGFEELGG-DDFTTEDLEKFL 112 (113)
T ss_pred EEEEECCEEEEEEecHHHhCC-CCCCHHHHHHHh
Confidence 999999999999999999988 899999999886
No 8
>KOG0910|consensus
Probab=99.86 E-value=1.7e-21 Score=162.86 Aligned_cols=95 Identities=20% Similarity=0.316 Sum_probs=84.0
Q ss_pred CChhHHHHH-hccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcEEEEEeCCee
Q psy6451 138 PDEKKFFDL-CKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVT 215 (332)
Q Consensus 138 ~~e~~~~~~-~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~ 215 (332)
.+..+|.+. +++..||||.|||+||+||+.|.|.|++++..|.+ ++|++||.++.+.++.+|+|..+||+++|+||+.
T Consensus 48 ~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~ 127 (150)
T KOG0910|consen 48 QSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEK 127 (150)
T ss_pred cCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECCEE
Confidence 344555555 57889999999999999999999999999999988 9999999999999999999999999999999999
Q ss_pred eeeEecccCcchhhHhH
Q psy6451 216 KDYIVGFTELGNCADFS 232 (332)
Q Consensus 216 v~~~~G~~~~~~~~~f~ 232 (332)
+++++|..+...+..++
T Consensus 128 ~d~~vG~~~~~~l~~~i 144 (150)
T KOG0910|consen 128 VDRFVGAVPKEQLRSLI 144 (150)
T ss_pred eeeecccCCHHHHHHHH
Confidence 99999988765443333
No 9
>PHA02278 thioredoxin-like protein
Probab=99.85 E-value=1.2e-20 Score=151.00 Aligned_cols=91 Identities=13% Similarity=0.109 Sum_probs=81.7
Q ss_pred CChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCC----hHHHHhCCcccCcEEEEEeC
Q psy6451 138 PDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERA----PFLTERLRIKVIPTLTLVKD 212 (332)
Q Consensus 138 ~~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~----~~l~~~~~I~~~PTl~~~~~ 212 (332)
++.++|.+.+.++++|||+||||||++|+.|.|.|++++.++.. +.|++||++.. +.++++|+|.++||+++|++
T Consensus 2 ~~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 2 NSLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred CCHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 45678889998999999999999999999999999999988544 78999999986 68999999999999999999
Q ss_pred CeeeeeEecccCcchh
Q psy6451 213 SVTKDYIVGFTELGNC 228 (332)
Q Consensus 213 G~~v~~~~G~~~~~~~ 228 (332)
|+.+.++.|..+...+
T Consensus 82 G~~v~~~~G~~~~~~l 97 (103)
T PHA02278 82 GQLVKKYEDQVTPMQL 97 (103)
T ss_pred CEEEEEEeCCCCHHHH
Confidence 9999999997665444
No 10
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.84 E-value=1.8e-20 Score=151.86 Aligned_cols=88 Identities=11% Similarity=0.132 Sum_probs=80.2
Q ss_pred hHHHHHhc--cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeee
Q psy6451 141 KKFFDLCK--KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKD 217 (332)
Q Consensus 141 ~~~~~~~~--~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~ 217 (332)
.+|.+.+. .+++|||+|||+||++|+.|.|.|++++.+|++ +.|++||+++++.++++|+|.++||+++|++|+.+.
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEE
Confidence 35666665 578999999999999999999999999999998 799999999999999999999999999999999999
Q ss_pred eEecccCcchh
Q psy6451 218 YIVGFTELGNC 228 (332)
Q Consensus 218 ~~~G~~~~~~~ 228 (332)
+..|..+...+
T Consensus 83 ~~~G~~~~~~~ 93 (114)
T cd02954 83 IDLGTGNNNKI 93 (114)
T ss_pred EEcCCCCCceE
Confidence 99998776554
No 11
>KOG0907|consensus
Probab=99.83 E-value=5.2e-20 Score=147.74 Aligned_cols=85 Identities=21% Similarity=0.375 Sum_probs=77.0
Q ss_pred hhHHHHHhcc-CCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeeee
Q psy6451 140 EKKFFDLCKK-SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDY 218 (332)
Q Consensus 140 e~~~~~~~~~-~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~ 218 (332)
.....+.... ++++||+|||+|||||+.|.|.+.+||.+|+++.|++||+++++.+++.|+|.++||+++|++|+.+.+
T Consensus 10 ~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~ 89 (106)
T KOG0907|consen 10 LDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDE 89 (106)
T ss_pred HHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEE
Confidence 3344444444 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccC
Q psy6451 219 IVGFTE 224 (332)
Q Consensus 219 ~~G~~~ 224 (332)
++|...
T Consensus 90 ~vGa~~ 95 (106)
T KOG0907|consen 90 VVGANK 95 (106)
T ss_pred EecCCH
Confidence 999654
No 12
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.82 E-value=1.6e-19 Score=162.85 Aligned_cols=153 Identities=15% Similarity=0.205 Sum_probs=107.2
Q ss_pred hhhhhhcCCCcEEEEEcc---CCChhhhhhHHHHHHHHHhhhhce--eeecccCCCCcccccCCCCc-------------
Q psy6451 72 KFFDLCKKSPNMVVHFYK---DGSVNCKILDEHMKTLCKKHLETR--FIKLNVERAPFLTGQQGHGE------------- 133 (332)
Q Consensus 72 ~f~~~~~~~~~vvVhFy~---p~~~~Ck~~~~~l~~LA~~~~~~~--f~kvd~~k~pfl~~k~g~g~------------- 133 (332)
.|++-++++.. ++-|++ |||++|+.|.+.|.++|..++.+. ++++|++..+-++.+.+...
T Consensus 12 ~~~~~~~~~~~-i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~ 90 (215)
T TIGR02187 12 LFLKELKNPVE-IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDG 90 (215)
T ss_pred HHHHhcCCCeE-EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeee
Confidence 34554544444 555888 999999999999999999997654 67777544332222211110
Q ss_pred ---ccccCChhHH---------------------HHHh-ccCCc-EEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEE
Q psy6451 134 ---YEEIPDEKKF---------------------FDLC-KKSPN-MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKL 187 (332)
Q Consensus 134 ---~~ei~~e~~~---------------------~~~~-~~~~~-VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kV 187 (332)
+.-+.+..++ .+.+ ...++ +|+.||++||++|+.+.|.++.++..++.+.|.++
T Consensus 91 ~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~v 170 (215)
T TIGR02187 91 GIRYTGIPAGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMI 170 (215)
T ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEE
Confidence 1111111111 1111 22344 45559999999999999999999999888999999
Q ss_pred ECcCChHHHHhCCcccCcEEEEEeCCeeeeeEecccCcchh
Q psy6451 188 NVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELGNC 228 (332)
Q Consensus 188 d~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G~~~~~~~ 228 (332)
|++..+.++.+|+|.++||++++++|+. +.|..+...+
T Consensus 171 D~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l 208 (215)
T TIGR02187 171 EANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQF 208 (215)
T ss_pred eCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHH
Confidence 9999999999999999999999988864 7786654443
No 13
>KOG0190|consensus
Probab=99.82 E-value=3.7e-20 Score=182.04 Aligned_cols=93 Identities=20% Similarity=0.289 Sum_probs=70.9
Q ss_pred HHHHh-ccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC---ceEEEEECcCChHHHHhCCcccCcEEEEEeCCeee--
Q psy6451 143 FFDLC-KKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE---TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTK-- 216 (332)
Q Consensus 143 ~~~~~-~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~---v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v-- 216 (332)
|.+++ ..++.|+|.||||||+||++++|.|++||.+|.+ +.++++|++.+. ...+.+.++|||++|+.|...
T Consensus 376 fd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~fPTI~~~pag~k~~p 453 (493)
T KOG0190|consen 376 FDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGFPTILFFPAGHKSNP 453 (493)
T ss_pred HHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--CccccccccceEEEecCCCCCCC
Confidence 44443 4668999999999999999999999999999865 899999999885 456788889999999987633
Q ss_pred eeEecccCcchhhHhHHHHHHHHHHHcCC
Q psy6451 217 DYIVGFTELGNCADFSTEMLEWRIAQAGV 245 (332)
Q Consensus 217 ~~~~G~~~~~~~~~f~~~~Le~~L~~~g~ 245 (332)
-.+.|.+.+ +.|..++..+|.
T Consensus 454 v~y~g~R~l--------e~~~~fi~~~a~ 474 (493)
T KOG0190|consen 454 VIYNGDRTL--------EDLKKFIKKSAT 474 (493)
T ss_pred cccCCCcch--------HHHHhhhccCCC
Confidence 233443333 345556655543
No 14
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.80 E-value=5.4e-19 Score=141.18 Aligned_cols=86 Identities=19% Similarity=0.165 Sum_probs=77.7
Q ss_pred ChhHHHHHhcc--CCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCCh---HHHHhCCcccCcEEEEEeCC
Q psy6451 139 DEKKFFDLCKK--SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP---FLTERLRIKVIPTLTLVKDS 213 (332)
Q Consensus 139 ~e~~~~~~~~~--~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~---~l~~~~~I~~~PTl~~~~~G 213 (332)
+.++|.+.+.+ +++|||+|||+||++|+.+.|.|+.++..++.+.|++||++.++ .++++|+|.++||+++|++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G 81 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG 81 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC
Confidence 34677777754 79999999999999999999999999999988999999999874 79999999999999999999
Q ss_pred eeeeeEecccC
Q psy6451 214 VTKDYIVGFTE 224 (332)
Q Consensus 214 ~~v~~~~G~~~ 224 (332)
+.+.++.|..+
T Consensus 82 ~~v~~~~G~~~ 92 (103)
T cd02985 82 EKIHEEEGIGP 92 (103)
T ss_pred eEEEEEeCCCH
Confidence 99999999654
No 15
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.80 E-value=3.1e-19 Score=145.12 Aligned_cols=98 Identities=9% Similarity=0.027 Sum_probs=84.0
Q ss_pred CcccccCChhHHHHH---hccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHH-HhCCcccCcE
Q psy6451 132 GEYEEIPDEKKFFDL---CKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLT-ERLRIKVIPT 206 (332)
Q Consensus 132 g~~~ei~~e~~~~~~---~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~-~~~~I~~~PT 206 (332)
+.+.++++. +|... +++++++||.||||||++|+.|.|.|+++|+++.+ +.|++||++.++.++ ++|+|.++||
T Consensus 9 ~~v~~l~~~-~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 9 SPVLDFYKG-QLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCeEEechh-hhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence 445566554 44443 68899999999999999999999999999999987 899999999999999 5899999999
Q ss_pred EEEEeCCeeeeeEecccCcchhhH
Q psy6451 207 LTLVKDSVTKDYIVGFTELGNCAD 230 (332)
Q Consensus 207 l~~~~~G~~v~~~~G~~~~~~~~~ 230 (332)
+++|++|+...++.|......+..
T Consensus 88 l~lf~~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 88 IHLYYRSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred EEEEECCccceEEeCCCCHHHHHh
Confidence 999999999899999777655533
No 16
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.80 E-value=5.6e-19 Score=140.79 Aligned_cols=87 Identities=21% Similarity=0.234 Sum_probs=81.3
Q ss_pred cccCChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC--ceEEEEECcCChHHHHhCCcccCcEEEEEeC
Q psy6451 135 EEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212 (332)
Q Consensus 135 ~ei~~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~ 212 (332)
+++.+.++|.+.++++++|||+||||||++|+.+.|.|+.++..+.+ +.|+++|++ ++.++++|+|+++||+++|++
T Consensus 2 ~~i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~ 80 (102)
T cd02948 2 VEINNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKN 80 (102)
T ss_pred eEccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEEC
Confidence 35678899999999999999999999999999999999999999874 789999999 889999999999999999999
Q ss_pred CeeeeeEecc
Q psy6451 213 SVTKDYIVGF 222 (332)
Q Consensus 213 G~~v~~~~G~ 222 (332)
|+.+.++.|.
T Consensus 81 g~~~~~~~G~ 90 (102)
T cd02948 81 GELVAVIRGA 90 (102)
T ss_pred CEEEEEEecC
Confidence 9999999995
No 17
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.80 E-value=2.8e-19 Score=141.79 Aligned_cols=95 Identities=14% Similarity=0.181 Sum_probs=84.4
Q ss_pred cccCChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcEEEEEeCC
Q psy6451 135 EEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLTLVKDS 213 (332)
Q Consensus 135 ~ei~~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G 213 (332)
.+++ .++|...+.++++++|.||+|||++|+.+.|.|+++|+++.+ +.|++||+++.+.++++|+|.++||+++|++|
T Consensus 4 ~~l~-~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 82 (101)
T cd03003 4 VTLD-RGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSG 82 (101)
T ss_pred EEcC-HhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCC
Confidence 4443 558888888889999999999999999999999999999987 89999999999999999999999999999999
Q ss_pred eeeeeEecccCcchhhH
Q psy6451 214 VTKDYIVGFTELGNCAD 230 (332)
Q Consensus 214 ~~v~~~~G~~~~~~~~~ 230 (332)
+.+.++.|..+...+..
T Consensus 83 ~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 83 MNPEKYYGDRSKESLVK 99 (101)
T ss_pred CCcccCCCCCCHHHHHh
Confidence 99988888766655433
No 18
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.79 E-value=6e-19 Score=144.67 Aligned_cols=105 Identities=14% Similarity=0.158 Sum_probs=87.4
Q ss_pred CCCcccccCChhHHHHHhccC-CcEEEEEecCCChh--hH--HHHHHHHHHHHHc--CC-ceEEEEECcCChHHHHhCCc
Q psy6451 130 GHGEYEEIPDEKKFFDLCKKS-PNMVVHFYKDGSVN--CK--ILDEHMKTLCKKH--LE-TRFIKLNVERAPFLTERLRI 201 (332)
Q Consensus 130 g~g~~~ei~~e~~~~~~~~~~-~~VvV~Fya~wc~~--Ck--~l~~~l~~La~~~--~~-v~f~kVd~~~~~~l~~~~~I 201 (332)
|...+.+++ +++|.+.+.++ .++|++||++||++ |+ .+.|.+.++|.++ .+ ++|++||++.++.++++|+|
T Consensus 7 ~~~~v~~lt-~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I 85 (120)
T cd03065 7 GKDRVIDLN-EKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL 85 (120)
T ss_pred CCcceeeCC-hhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC
Confidence 444455665 46788777655 57788888888977 99 8999999999998 54 99999999999999999999
Q ss_pred ccCcEEEEEeCCeeeeeEecccCcchhhHhHHHHH
Q psy6451 202 KVIPTLTLVKDSVTKDYIVGFTELGNCADFSTEML 236 (332)
Q Consensus 202 ~~~PTl~~~~~G~~v~~~~G~~~~~~~~~f~~~~L 236 (332)
+++||+++|++|+.+. +.|..+...+..|+.+.+
T Consensus 86 ~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 86 DEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 9999999999999998 999988877766665543
No 19
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.79 E-value=1.2e-18 Score=146.32 Aligned_cols=89 Identities=11% Similarity=0.118 Sum_probs=80.8
Q ss_pred ccccCChhHHHHHhc--cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcEEE-E
Q psy6451 134 YEEIPDEKKFFDLCK--KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLT-L 209 (332)
Q Consensus 134 ~~ei~~e~~~~~~~~--~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PTl~-~ 209 (332)
+.++.+..+|.+.+. .+++|||.|||+||++|+.|+|.|+++|.++++ +.|++||+++++++++.|+|++.||++ +
T Consensus 5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~f 84 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFF 84 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEE
Confidence 456788899999884 578999999999999999999999999999998 888999999999999999999776666 9
Q ss_pred EeCCe-eeeeEecc
Q psy6451 210 VKDSV-TKDYIVGF 222 (332)
Q Consensus 210 ~~~G~-~v~~~~G~ 222 (332)
|++|+ .+.+..|.
T Consensus 85 fk~g~~~vd~~tG~ 98 (142)
T PLN00410 85 FRNKHIMIDLGTGN 98 (142)
T ss_pred EECCeEEEEEeccc
Confidence 99999 99999994
No 20
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.79 E-value=2.1e-18 Score=135.91 Aligned_cols=95 Identities=19% Similarity=0.340 Sum_probs=86.4
Q ss_pred ChhHHHHHhcc-CCcEEEEEecCCChhhHHHHHHHHHHHHHcC-CceEEEEECcCChHHHHhCCcccCcEEEEEeCCeee
Q psy6451 139 DEKKFFDLCKK-SPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTK 216 (332)
Q Consensus 139 ~e~~~~~~~~~-~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~-~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v 216 (332)
+.++|.+.+.+ ++++||.||++||++|+.+.|.|+++++.+. ++.|+.||+++.+.++++|+|.++||+++|++|+.+
T Consensus 5 t~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 5 TDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEV 84 (103)
T ss_dssp STTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEE
T ss_pred CHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEE
Confidence 45578888876 8999999999999999999999999999999 699999999999999999999999999999999999
Q ss_pred eeEecccCcchhhHhHH
Q psy6451 217 DYIVGFTELGNCADFST 233 (332)
Q Consensus 217 ~~~~G~~~~~~~~~f~~ 233 (332)
.++.|..+...+.+|+.
T Consensus 85 ~~~~g~~~~~~l~~~i~ 101 (103)
T PF00085_consen 85 KRYNGPRNAESLIEFIE 101 (103)
T ss_dssp EEEESSSSHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHH
Confidence 99999877766655554
No 21
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.78 E-value=1.3e-18 Score=138.39 Aligned_cols=83 Identities=19% Similarity=0.264 Sum_probs=75.9
Q ss_pred ccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECc-CChHHHHhCCcccCcEEEEEeCCeeeeeEecccCcc
Q psy6451 148 KKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVE-RAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELG 226 (332)
Q Consensus 148 ~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~-~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G~~~~~ 226 (332)
.++++|||+||||||++|+.+.|.|+++++.++++.|++||.+ ..+.++++|+|.++||+++|++| .+.++.|..+..
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~~ 94 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTLD 94 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCHH
Confidence 4689999999999999999999999999999999999999999 89999999999999999999999 888999987766
Q ss_pred hhhHh
Q psy6451 227 NCADF 231 (332)
Q Consensus 227 ~~~~f 231 (332)
.+.+|
T Consensus 95 ~l~~f 99 (100)
T cd02999 95 SLAAF 99 (100)
T ss_pred HHHhh
Confidence 55444
No 22
>PTZ00051 thioredoxin; Provisional
Probab=99.77 E-value=2.8e-18 Score=134.87 Aligned_cols=90 Identities=19% Similarity=0.348 Sum_probs=85.3
Q ss_pred ccccCChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEeCC
Q psy6451 134 YEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDS 213 (332)
Q Consensus 134 ~~ei~~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G 213 (332)
+.++++.++|...++.+++++|+||++||++|+.+.|.|+.+++.++++.|+.||+++++.++.+|+|.++||+++|++|
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 81 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFKNG 81 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEeCC
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeEeccc
Q psy6451 214 VTKDYIVGFT 223 (332)
Q Consensus 214 ~~v~~~~G~~ 223 (332)
+.+.++.|..
T Consensus 82 ~~~~~~~G~~ 91 (98)
T PTZ00051 82 SVVDTLLGAN 91 (98)
T ss_pred eEEEEEeCCC
Confidence 9999999963
No 23
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.77 E-value=1.8e-18 Score=137.72 Aligned_cols=91 Identities=14% Similarity=0.259 Sum_probs=79.8
Q ss_pred hhHHHHHh-ccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcEEEEEeCC-eee
Q psy6451 140 EKKFFDLC-KKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLTLVKDS-VTK 216 (332)
Q Consensus 140 e~~~~~~~-~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G-~~v 216 (332)
..+|.+.+ .+++++||+||+|||++|+.+.|.+++++.++.+ +.|++||+++.+.++++|+|.++||+++|++| +.+
T Consensus 8 ~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 87 (104)
T cd03004 8 PEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGNASKY 87 (104)
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCCCCCc
Confidence 45777765 4567999999999999999999999999999876 89999999999999999999999999999988 999
Q ss_pred eeEecccC-cchhhH
Q psy6451 217 DYIVGFTE-LGNCAD 230 (332)
Q Consensus 217 ~~~~G~~~-~~~~~~ 230 (332)
.++.|... ..++..
T Consensus 88 ~~~~G~~~~~~~l~~ 102 (104)
T cd03004 88 HSYNGWHRDADSILE 102 (104)
T ss_pred eEccCCCCCHHHHHh
Confidence 99999765 544433
No 24
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.1e-18 Score=160.49 Aligned_cols=104 Identities=18% Similarity=0.312 Sum_probs=90.0
Q ss_pred ccccCChhHHHHH-h--ccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcEEEE
Q psy6451 134 YEEIPDEKKFFDL-C--KKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLTL 209 (332)
Q Consensus 134 ~~ei~~e~~~~~~-~--~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PTl~~ 209 (332)
+.++++. +|... + +...||||+||+|||++|+.+.|.|++++..|.+ +++++|||+..|.++..|||+++||+++
T Consensus 25 I~dvT~a-nfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~a 103 (304)
T COG3118 25 IKDVTEA-NFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYA 103 (304)
T ss_pred ceechHh-HHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEE
Confidence 4455544 44444 3 3347999999999999999999999999999999 9999999999999999999999999999
Q ss_pred EeCCeeeeeEecccCcchhhHhHHHHHHH
Q psy6451 210 VKDSVTKDYIVGFTELGNCADFSTEMLEW 238 (332)
Q Consensus 210 ~~~G~~v~~~~G~~~~~~~~~f~~~~Le~ 238 (332)
|++|++++.+.|..+...+.+|+...+-.
T Consensus 104 f~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 104 FKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred eeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 99999999999999988887777765444
No 25
>PRK10996 thioredoxin 2; Provisional
Probab=99.77 E-value=7.3e-18 Score=142.02 Aligned_cols=101 Identities=21% Similarity=0.349 Sum_probs=88.0
Q ss_pred CcccccCChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcEEEEE
Q psy6451 132 GEYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLTLV 210 (332)
Q Consensus 132 g~~~ei~~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PTl~~~ 210 (332)
|...++ +..+|.+.++++++|+|.||++||++|+.+.|.|..++.++.+ +.|++||++..+.++++|+|.++||+++|
T Consensus 35 ~~~i~~-~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~ 113 (139)
T PRK10996 35 GEVINA-TGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIF 113 (139)
T ss_pred CCCEEc-CHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEE
Confidence 344443 5678888888899999999999999999999999999998875 99999999999999999999999999999
Q ss_pred eCCeeeeeEecccCcchhhHhHH
Q psy6451 211 KDSVTKDYIVGFTELGNCADFST 233 (332)
Q Consensus 211 ~~G~~v~~~~G~~~~~~~~~f~~ 233 (332)
++|+.+.++.|..+...+..|+.
T Consensus 114 ~~G~~v~~~~G~~~~e~l~~~l~ 136 (139)
T PRK10996 114 KNGQVVDMLNGAVPKAPFDSWLN 136 (139)
T ss_pred ECCEEEEEEcCCCCHHHHHHHHH
Confidence 99999999999766555544443
No 26
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.77 E-value=2.7e-18 Score=138.26 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=81.4
Q ss_pred hhHHHHHhccCCcEEEEEecCC--ChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcEEEEEeCCeee
Q psy6451 140 EKKFFDLCKKSPNMVVHFYKDG--SVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTK 216 (332)
Q Consensus 140 e~~~~~~~~~~~~VvV~Fya~w--c~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v 216 (332)
..+|.+.+..+..+||.||++| ||+|+.+.|.|++++++|++ +.|++||++..+.++.+|+|+++||+++|++|+.+
T Consensus 17 ~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~v 96 (111)
T cd02965 17 AATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGRYV 96 (111)
T ss_pred cccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEEE
Confidence 3467788888999999999997 99999999999999999998 89999999999999999999999999999999999
Q ss_pred eeEecccCcch
Q psy6451 217 DYIVGFTELGN 227 (332)
Q Consensus 217 ~~~~G~~~~~~ 227 (332)
.++.|..+...
T Consensus 97 ~~~~G~~~~~e 107 (111)
T cd02965 97 GVLAGIRDWDE 107 (111)
T ss_pred EEEeCccCHHH
Confidence 99999776543
No 27
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.77 E-value=3.7e-18 Score=133.85 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=78.1
Q ss_pred HHHHhc-c-CCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeeeeE
Q psy6451 143 FFDLCK-K-SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYI 219 (332)
Q Consensus 143 ~~~~~~-~-~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~~ 219 (332)
|.+.+. . +++|||+||+|||++|+.+.|.|++++..+.+ +.|++||++..+.++++|+|.++||+++|++|+.+.++
T Consensus 3 f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~ 82 (96)
T cd02956 3 FQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDGF 82 (96)
T ss_pred hHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeeee
Confidence 444553 3 67999999999999999999999999999976 88999999999999999999999999999999999999
Q ss_pred ecccCcchhhHh
Q psy6451 220 VGFTELGNCADF 231 (332)
Q Consensus 220 ~G~~~~~~~~~f 231 (332)
.|..+...+..|
T Consensus 83 ~g~~~~~~l~~~ 94 (96)
T cd02956 83 QGAQPEEQLRQM 94 (96)
T ss_pred cCCCCHHHHHHH
Confidence 997666554443
No 28
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.76 E-value=5.4e-18 Score=137.28 Aligned_cols=94 Identities=11% Similarity=0.121 Sum_probs=81.1
Q ss_pred ChhHHHHHh---ccCCcEEEEEecCCChhhHHHHHHHHHHHHHcC--CceEEEEECcCChHHHHhCCcccCcEEEEEeCC
Q psy6451 139 DEKKFFDLC---KKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVERAPFLTERLRIKVIPTLTLVKDS 213 (332)
Q Consensus 139 ~e~~~~~~~---~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~--~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G 213 (332)
+...|.+.+ ..++++||+||+|||++|+.+.|.++++++++. ++.|++||++..+.++++|+|.++||+++|++|
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g 89 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING 89 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC
Confidence 445565443 367999999999999999999999999999996 489999999999999999999999999999999
Q ss_pred eeeeeEecccCcchhhHhH
Q psy6451 214 VTKDYIVGFTELGNCADFS 232 (332)
Q Consensus 214 ~~v~~~~G~~~~~~~~~f~ 232 (332)
+.+.++.|..+...+..|+
T Consensus 90 ~~~~~~~G~~~~~~l~~~i 108 (111)
T cd02963 90 QVTFYHDSSFTKQHVVDFV 108 (111)
T ss_pred EEEEEecCCCCHHHHHHHH
Confidence 9999999977665554444
No 29
>PRK09381 trxA thioredoxin; Provisional
Probab=99.76 E-value=9.2e-18 Score=134.83 Aligned_cols=100 Identities=22% Similarity=0.345 Sum_probs=84.7
Q ss_pred ccccCChhHHHH-HhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcEEEEEe
Q psy6451 134 YEEIPDEKKFFD-LCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLTLVK 211 (332)
Q Consensus 134 ~~ei~~e~~~~~-~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~ 211 (332)
+++++. ++|.+ ++..++++||+||+|||++|+.+.|.|+.++.++.+ +.|+++|++..+.++++|+|.++||+++|+
T Consensus 5 v~~~~~-~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 83 (109)
T PRK09381 5 IIHLTD-DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 83 (109)
T ss_pred ceeeCh-hhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEe
Confidence 445544 35554 456789999999999999999999999999999976 899999999999999999999999999999
Q ss_pred CCeeeeeEecccCcchhhHhHHH
Q psy6451 212 DSVTKDYIVGFTELGNCADFSTE 234 (332)
Q Consensus 212 ~G~~v~~~~G~~~~~~~~~f~~~ 234 (332)
+|+.+.++.|..+.+.+..|+.+
T Consensus 84 ~G~~~~~~~G~~~~~~l~~~i~~ 106 (109)
T PRK09381 84 NGEVAATKVGALSKGQLKEFLDA 106 (109)
T ss_pred CCeEEEEecCCCCHHHHHHHHHH
Confidence 99999999998665554444433
No 30
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.76 E-value=4.5e-18 Score=136.62 Aligned_cols=97 Identities=20% Similarity=0.305 Sum_probs=82.2
Q ss_pred ccccCChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHc----C---CceEEEEECcCChHHHHhCCcccCcE
Q psy6451 134 YEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKH----L---ETRFIKLNVERAPFLTERLRIKVIPT 206 (332)
Q Consensus 134 ~~ei~~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~----~---~v~f~kVd~~~~~~l~~~~~I~~~PT 206 (332)
+.+++ .++|.+.++.++++||+||||||++|+.+.|.|+.+++.+ + .+.|++||++.++.++++|+|.++||
T Consensus 3 v~~l~-~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 3 IVSLT-SGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred eEEcC-HhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 34554 5588888888999999999999999999999999999864 2 38999999999999999999999999
Q ss_pred EEEEeCCee-eeeEecccCcchhhHh
Q psy6451 207 LTLVKDSVT-KDYIVGFTELGNCADF 231 (332)
Q Consensus 207 l~~~~~G~~-v~~~~G~~~~~~~~~f 231 (332)
+++|++|+. ...+.|..+...+..|
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~~l~~f 107 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVEALAEF 107 (108)
T ss_pred EEEEeCCcCcceecCCCCCHHHHHhh
Confidence 999999994 4777787666555444
No 31
>KOG0191|consensus
Probab=99.75 E-value=4.8e-18 Score=165.89 Aligned_cols=174 Identities=21% Similarity=0.280 Sum_probs=132.5
Q ss_pred CcceEecCCchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh-ceeeecccCCCCcccccCCCCcccccC-
Q psy6451 61 HGEYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTGQQGHGEYEEIP- 138 (332)
Q Consensus 61 ~G~~~ev~~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~kvd~~k~pfl~~k~g~g~~~ei~- 138 (332)
.|....++....+.........++|+||+|||++|+.+.+.+.+++..+.+ +.++.+|+.....+|...+...++++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~ 107 (383)
T KOG0191|consen 28 SGVVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKV 107 (383)
T ss_pred ccchhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEE
Confidence 455555554444455556778899999999999999999999999999887 788999998876666555443322211
Q ss_pred ------------------------------------------ChhHHHH-HhccCCcEEEEEecCCChhhHHHHHHHHHH
Q psy6451 139 ------------------------------------------DEKKFFD-LCKKSPNMVVHFYKDGSVNCKILDEHMKTL 175 (332)
Q Consensus 139 ------------------------------------------~e~~~~~-~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~L 175 (332)
....|.. +......++|.||+|||++|+.+.|.++++
T Consensus 108 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~ 187 (383)
T KOG0191|consen 108 FRPGKKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKL 187 (383)
T ss_pred EcCCCceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHH
Confidence 1112222 224567889999999999999999999999
Q ss_pred HHHcC---CceEEEEECcCChHHHHhCCcccCcEEEEEeCCee-eeeEecccCcchhhHhHHH
Q psy6451 176 CKKHL---ETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVT-KDYIVGFTELGNCADFSTE 234 (332)
Q Consensus 176 a~~~~---~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~-v~~~~G~~~~~~~~~f~~~ 234 (332)
+..+. .+.++.+|++..+.++..++|.++||+++|++|.. .....|......+..|...
T Consensus 188 a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~ 250 (383)
T KOG0191|consen 188 AKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEK 250 (383)
T ss_pred HHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHh
Confidence 99874 38999999998999999999999999999999888 6666666666555444444
No 32
>KOG0908|consensus
Probab=99.75 E-value=3.9e-18 Score=152.32 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=85.7
Q ss_pred ccccCChhHHHHHhccC--CcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEe
Q psy6451 134 YEEIPDEKKFFDLCKKS--PNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVK 211 (332)
Q Consensus 134 ~~ei~~e~~~~~~~~~~--~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~ 211 (332)
+..+.++.+|...+... +.|+|+|||.||+||+.++|.++.|+.+||+..|++||+++|...+..+||..+||+++|+
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff~ 82 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFFR 82 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEEe
Confidence 45778888999988654 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeeEecccCc
Q psy6451 212 DSVTKDYIVGFTEL 225 (332)
Q Consensus 212 ~G~~v~~~~G~~~~ 225 (332)
||..++++.|....
T Consensus 83 ng~kid~~qGAd~~ 96 (288)
T KOG0908|consen 83 NGVKIDQIQGADAS 96 (288)
T ss_pred cCeEeeeecCCCHH
Confidence 99999999997653
No 33
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.74 E-value=1.6e-17 Score=133.91 Aligned_cols=82 Identities=18% Similarity=0.271 Sum_probs=73.7
Q ss_pred hHHHHHhc--cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeee
Q psy6451 141 KKFFDLCK--KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKD 217 (332)
Q Consensus 141 ~~~~~~~~--~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~ 217 (332)
++|.+.+. ++++|||+|||+||++|+.|+|.|++||.+|++ +.|++||+++.+++++.|+|...||+++|++|+.+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~ 82 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMK 82 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEE
Confidence 34555554 579999999999999999999999999999999 999999999999999999999999999999999876
Q ss_pred eEecc
Q psy6451 218 YIVGF 222 (332)
Q Consensus 218 ~~~G~ 222 (332)
--.|-
T Consensus 83 ~d~gt 87 (114)
T cd02986 83 VDYGS 87 (114)
T ss_pred EecCC
Confidence 65553
No 34
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.73 E-value=2.3e-17 Score=130.57 Aligned_cols=95 Identities=18% Similarity=0.271 Sum_probs=78.9
Q ss_pred ccccCChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcC--CceEEEEECcCChHHHHhCCcccCcEEEEEe
Q psy6451 134 YEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVERAPFLTERLRIKVIPTLTLVK 211 (332)
Q Consensus 134 ~~ei~~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~--~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~ 211 (332)
+.+++ ..+|.+.++. . +||.||||||++|+.+.|.|++++..+. ++.|++||++..+.++++|+|.++||+++|+
T Consensus 3 v~~l~-~~~f~~~~~~-~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02994 3 VVELT-DSNWTLVLEG-E-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAK 79 (101)
T ss_pred eEEcC-hhhHHHHhCC-C-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeC
Confidence 34454 4577777643 3 7899999999999999999999998875 3899999999999999999999999999999
Q ss_pred CCeeeeeEecccCcchhhHhH
Q psy6451 212 DSVTKDYIVGFTELGNCADFS 232 (332)
Q Consensus 212 ~G~~v~~~~G~~~~~~~~~f~ 232 (332)
+|+. .++.|......+..|+
T Consensus 80 ~g~~-~~~~G~~~~~~l~~~i 99 (101)
T cd02994 80 DGVF-RRYQGPRDKEDLISFI 99 (101)
T ss_pred CCCE-EEecCCCCHHHHHHHH
Confidence 9984 7888877665554444
No 35
>KOG3171|consensus
Probab=99.73 E-value=1.8e-17 Score=144.72 Aligned_cols=147 Identities=25% Similarity=0.379 Sum_probs=123.6
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCCchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHH
Q psy6451 28 ENLDLDSIEKLREDHLKKLKAKAKRNQELKALGHGEYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCK 107 (332)
Q Consensus 28 ~~~d~~~l~~~r~~Rl~el~~~~~~~~~~~~~g~G~~~ev~~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~ 107 (332)
+..|+..|+.||.|||++|+++..... .||.|.|+++.+.|.+.+.++
T Consensus 109 ~~~de~~L~~yr~qrm~eMrq~l~~gp-----~~~~V~El~~gkqfld~idke--------------------------- 156 (273)
T KOG3171|consen 109 EKEDENCLRKYRRQRMQEMRQKLSFGP-----RYGFVYELETGKQFLDTIDKE--------------------------- 156 (273)
T ss_pred hhchHHHHHHHHHHHHHHHHHHhhcCC-----ccceEEEeccchhHHHHHhcc---------------------------
Confidence 344777999999999999999887743 489999999999999888654
Q ss_pred hhhhceeeecccCCCCcccccCCCCcccccCChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEE
Q psy6451 108 KHLETRFIKLNVERAPFLTGQQGHGEYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKL 187 (332)
Q Consensus 108 ~~~~~~f~kvd~~k~pfl~~k~g~g~~~ei~~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kV 187 (332)
.+...++||+|.|..+.|..|+..+..||+.||-++|++|
T Consensus 157 ----------------------------------------~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFcki 196 (273)
T KOG3171|consen 157 ----------------------------------------LKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKI 196 (273)
T ss_pred ----------------------------------------cceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEe
Confidence 1345567788888888888888899999999999999999
Q ss_pred ECcCChHHHHhCCcccCcEEEEEeCCeeeeeEecccCcchhhHhHHHHHHHHHHHcCCccc
Q psy6451 188 NVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELGNCADFSTEMLEWRIAQAGVIDY 248 (332)
Q Consensus 188 d~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G~~~~~~~~~f~~~~Le~~L~~~g~l~~ 248 (332)
-.... ....+|...++||+++|++|+.+.+++.....-+ ++|....|+.+|..+|+++.
T Consensus 197 kss~~-gas~~F~~n~lP~LliYkgGeLIgNFv~va~qlg-edffa~dle~FL~e~gllpe 255 (273)
T KOG3171|consen 197 KSSNT-GASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLG-EDFFAGDLESFLNEYGLLPE 255 (273)
T ss_pred eeccc-cchhhhcccCCceEEEeeCCchhHHHHHHHHHHh-hhhhhhhHHHHHHHcCCCcc
Confidence 87765 3477999999999999999999999988755433 69999999999999999954
No 36
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.73 E-value=3.8e-17 Score=128.06 Aligned_cols=84 Identities=24% Similarity=0.495 Sum_probs=77.2
Q ss_pred hhHHHHHhccC--CcEEEEEecCCChhhHHHHHHHHHHHHH-cCCceEEEEECcCChHHHHhCCcccCcEEEEEeCCeee
Q psy6451 140 EKKFFDLCKKS--PNMVVHFYKDGSVNCKILDEHMKTLCKK-HLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTK 216 (332)
Q Consensus 140 e~~~~~~~~~~--~~VvV~Fya~wc~~Ck~l~~~l~~La~~-~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v 216 (332)
.++|.+.+... ++|+|+||+|||++|+.|.|.|++++.+ ++.+.|+++|+++.+.++.+|+|.++||+++|++|+.+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 45677777666 9999999999999999999999999999 56699999999999999999999999999999999999
Q ss_pred eeEeccc
Q psy6451 217 DYIVGFT 223 (332)
Q Consensus 217 ~~~~G~~ 223 (332)
.++.|..
T Consensus 82 ~~~~g~~ 88 (97)
T cd02984 82 DRVSGAD 88 (97)
T ss_pred EEEeCCC
Confidence 9999964
No 37
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.73 E-value=3e-17 Score=129.64 Aligned_cols=93 Identities=25% Similarity=0.353 Sum_probs=80.3
Q ss_pred ccCChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC----ceEEEEECcCChHHHHhCCcccCcEEEEEe
Q psy6451 136 EIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE----TRFIKLNVERAPFLTERLRIKVIPTLTLVK 211 (332)
Q Consensus 136 ei~~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~----v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~ 211 (332)
+++ .++|...+..+ +++|.||++||++|+.+.|.+..++.++.+ +.|++||++..+.++++|+|.++||+++|+
T Consensus 4 ~l~-~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 81 (102)
T cd03005 4 ELT-EDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFK 81 (102)
T ss_pred ECC-HHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEe
Confidence 343 34677777665 599999999999999999999999998853 899999999999999999999999999999
Q ss_pred CCeeeeeEecccCcchhhH
Q psy6451 212 DSVTKDYIVGFTELGNCAD 230 (332)
Q Consensus 212 ~G~~v~~~~G~~~~~~~~~ 230 (332)
+|+.+.++.|..+...+..
T Consensus 82 ~g~~~~~~~G~~~~~~l~~ 100 (102)
T cd03005 82 DGEKVDKYKGTRDLDSLKE 100 (102)
T ss_pred CCCeeeEeeCCCCHHHHHh
Confidence 9999999999876654433
No 38
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.72 E-value=6.7e-17 Score=137.94 Aligned_cols=93 Identities=18% Similarity=0.279 Sum_probs=81.4
Q ss_pred CCcccccCChhHHHHHhc--cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC--ceEEEEECcCChHHHHhCCccc---
Q psy6451 131 HGEYEEIPDEKKFFDLCK--KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNVERAPFLTERLRIKV--- 203 (332)
Q Consensus 131 ~g~~~ei~~e~~~~~~~~--~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~~~~~~l~~~~~I~~--- 203 (332)
++.+.+++. ++|.+.+. .+.+|||+||+|||++|+.+.|.|++++.++.+ ++|++||+++.+.++++|+|.+
T Consensus 27 ~~~v~~l~~-~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~ 105 (152)
T cd02962 27 PEHIKYFTP-KTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPL 105 (152)
T ss_pred CCccEEcCH-HHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCC
Confidence 455666664 56888774 357899999999999999999999999999863 9999999999999999999988
Q ss_pred ---CcEEEEEeCCeeeeeEecccC
Q psy6451 204 ---IPTLTLVKDSVTKDYIVGFTE 224 (332)
Q Consensus 204 ---~PTl~~~~~G~~v~~~~G~~~ 224 (332)
+||+++|++|+.+.++.|+..
T Consensus 106 v~~~PT~ilf~~Gk~v~r~~G~~~ 129 (152)
T cd02962 106 SKQLPTIILFQGGKEVARRPYYND 129 (152)
T ss_pred cCCCCEEEEEECCEEEEEEecccc
Confidence 999999999999999999643
No 39
>KOG0190|consensus
Probab=99.70 E-value=3.4e-17 Score=161.22 Aligned_cols=131 Identities=15% Similarity=0.261 Sum_probs=103.9
Q ss_pred hhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcC----CceEEEEECcCChHHHHhCCcccCcEEEEEeCCee
Q psy6451 140 EKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL----ETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVT 215 (332)
Q Consensus 140 e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~----~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~ 215 (332)
.++|.+.+..+..++|.||||||+||+.++|.|++.|.... .+++++||++....+|.+|+|+++||+.+|+||..
T Consensus 32 ~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~ 111 (493)
T KOG0190|consen 32 KDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGRS 111 (493)
T ss_pred cccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCCc
Confidence 44799999999999999999999999999999999998764 48999999999999999999999999999999999
Q ss_pred eeeEecccCcchhhHhHHHHHHHHHHHcCCccccCCCCCCCchhhhhhhhhhhhcceEee-cCCCCCcc
Q psy6451 216 KDYIVGFTELGNCADFSTEMLEWRIAQAGVIDYEGDLFNPPDIKKKQKKRMIEKKKIIRG-RNSTGVID 283 (332)
Q Consensus 216 v~~~~G~~~~~~~~~f~~~~Le~~L~~~g~l~~~~~~~~~P~~~~~~~~~~~~~~~~i~g-~~~~~~~d 283 (332)
...+.|....+++ +.|+-.+.|+-. ..+..-.... ..+.++..+|.| |..+++.+
T Consensus 112 ~~~Y~G~r~adgI-------v~wl~kq~gPa~--~~l~~~~~a~----~~l~~~~~~vig~F~d~~~~~ 167 (493)
T KOG0190|consen 112 AQDYNGPREADGI-------VKWLKKQSGPAS--KTLKTVDEAE----EFLSKKDVVVIGFFKDLESLA 167 (493)
T ss_pred ceeccCcccHHHH-------HHHHHhccCCCc--eecccHHHHH----hhccCCceEEEEEecccccch
Confidence 7788898887777 777777777652 2222212222 334456678888 55454444
No 40
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.70 E-value=1.1e-16 Score=126.63 Aligned_cols=91 Identities=15% Similarity=0.250 Sum_probs=80.7
Q ss_pred hhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcC--C-ceEEEEECcC--ChHHHHhCCcccCcEEEEEeCCe
Q psy6451 140 EKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL--E-TRFIKLNVER--APFLTERLRIKVIPTLTLVKDSV 214 (332)
Q Consensus 140 e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~--~-v~f~kVd~~~--~~~l~~~~~I~~~PTl~~~~~G~ 214 (332)
...|.+.++++++++|.||++||++|+.+.|.+..++..+. + +.|+++|++. ++.++.+|+|+++||+++|++|+
T Consensus 7 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 7 DEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred hHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCC
Confidence 44788888888999999999999999999999999998876 3 8899999998 99999999999999999999999
Q ss_pred eeeeEecccCcchhhH
Q psy6451 215 TKDYIVGFTELGNCAD 230 (332)
Q Consensus 215 ~v~~~~G~~~~~~~~~ 230 (332)
.+.++.|......+.+
T Consensus 87 ~~~~~~g~~~~~~l~~ 102 (104)
T cd02997 87 FVEKYEGERTAEDIIE 102 (104)
T ss_pred eeEEeCCCCCHHHHHh
Confidence 9999998776554433
No 41
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.70 E-value=1.8e-16 Score=124.16 Aligned_cols=94 Identities=24% Similarity=0.390 Sum_probs=81.4
Q ss_pred hhHHHHHhcc-CCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeee
Q psy6451 140 EKKFFDLCKK-SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKD 217 (332)
Q Consensus 140 e~~~~~~~~~-~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~ 217 (332)
.+.|...++. +++++|+||++||++|+.+.|.|+.+++.+++ +.|+++|++..+.+++.|+|.++||+++|++|+.+.
T Consensus 3 ~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 82 (101)
T TIGR01068 3 DANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEVD 82 (101)
T ss_pred HHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEee
Confidence 3466676655 46999999999999999999999999999885 999999999999999999999999999999999999
Q ss_pred eEecccCcchhhHhHH
Q psy6451 218 YIVGFTELGNCADFST 233 (332)
Q Consensus 218 ~~~G~~~~~~~~~f~~ 233 (332)
++.|..+...+..|+.
T Consensus 83 ~~~g~~~~~~l~~~l~ 98 (101)
T TIGR01068 83 RSVGALPKAALKQLIN 98 (101)
T ss_pred eecCCCCHHHHHHHHH
Confidence 9998766544444443
No 42
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.69 E-value=1.7e-16 Score=127.06 Aligned_cols=92 Identities=17% Similarity=0.240 Sum_probs=75.9
Q ss_pred hhHHHHHhc-cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcC--ChHHHHhCCcccCcEEEEEeCCe-
Q psy6451 140 EKKFFDLCK-KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVER--APFLTERLRIKVIPTLTLVKDSV- 214 (332)
Q Consensus 140 e~~~~~~~~-~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~--~~~l~~~~~I~~~PTl~~~~~G~- 214 (332)
..+|...+. .++++||.||+|||++|+.+.|.|+++++.+.+ +.|+.||++. .+.++.+|+|.++||+++|.+|.
T Consensus 7 ~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~ 86 (109)
T cd03002 7 PKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKK 86 (109)
T ss_pred hhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCc
Confidence 346666664 467799999999999999999999999999876 8999999998 88999999999999999999886
Q ss_pred ----eeeeEecccCcchhhHh
Q psy6451 215 ----TKDYIVGFTELGNCADF 231 (332)
Q Consensus 215 ----~v~~~~G~~~~~~~~~f 231 (332)
....+.|......+..|
T Consensus 87 ~~~~~~~~~~G~~~~~~l~~f 107 (109)
T cd03002 87 ASKHAVEDYNGERSAKAIVDF 107 (109)
T ss_pred ccccccccccCccCHHHHHHH
Confidence 44556665555444333
No 43
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.68 E-value=2.5e-16 Score=133.12 Aligned_cols=96 Identities=18% Similarity=0.256 Sum_probs=79.8
Q ss_pred hHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCC--hHHHHhCCcccCcEEEEE-eCCeee
Q psy6451 141 KKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERA--PFLTERLRIKVIPTLTLV-KDSVTK 216 (332)
Q Consensus 141 ~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~--~~l~~~~~I~~~PTl~~~-~~G~~v 216 (332)
..|.+.+.++++|||+||++||++|+.+.|.|.+++..|.+ +.|+.|+++.. +.++..|+|.++||+++| ++|+++
T Consensus 11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 35666778899999999999999999999999999999975 78888888754 578999999999999999 589999
Q ss_pred eeEecccCcchhhHhHHHHHHHHH
Q psy6451 217 DYIVGFTELGNCADFSTEMLEWRI 240 (332)
Q Consensus 217 ~~~~G~~~~~~~~~f~~~~Le~~L 240 (332)
.++.|......+ .+.|+.++
T Consensus 91 ~~~~G~~~~~~l----~~~l~~l~ 110 (142)
T cd02950 91 GQSIGLQPKQVL----AQNLDALV 110 (142)
T ss_pred EEEeCCCCHHHH----HHHHHHHH
Confidence 999997664333 34444444
No 44
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.68 E-value=3.7e-16 Score=127.05 Aligned_cols=92 Identities=16% Similarity=0.277 Sum_probs=78.6
Q ss_pred HHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeee--eEe
Q psy6451 143 FFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKD--YIV 220 (332)
Q Consensus 143 ~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~--~~~ 220 (332)
|.+.+.+...++|.||++||++|+.+.|.+++++..++.+.|.++|+++.+.++..|+|.++||+++|++|.... ++.
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~ 94 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYY 94 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEE
Confidence 666677788899999999999999999999999999877999999999999999999999999999999876655 677
Q ss_pred cccCcchhhHhHHH
Q psy6451 221 GFTELGNCADFSTE 234 (332)
Q Consensus 221 G~~~~~~~~~f~~~ 234 (332)
|..+...+..|+..
T Consensus 95 G~~~~~el~~~i~~ 108 (113)
T cd02975 95 GLPAGYEFASLIED 108 (113)
T ss_pred ecCchHHHHHHHHH
Confidence 87665555444433
No 45
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.67 E-value=4.5e-16 Score=140.83 Aligned_cols=105 Identities=23% Similarity=0.268 Sum_probs=90.4
Q ss_pred cccccCChhHHHHHhcc-----CCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcE
Q psy6451 133 EYEEIPDEKKFFDLCKK-----SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPT 206 (332)
Q Consensus 133 ~~~ei~~e~~~~~~~~~-----~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PT 206 (332)
.+.+++ +.+|.+.+.. +++++|.||||||++|+.+.|.|+++++.+.+ +.|+++|++.++.++++|+|.++||
T Consensus 31 ~Vv~Lt-~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PT 109 (224)
T PTZ00443 31 ALVLLN-DKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPT 109 (224)
T ss_pred CcEECC-HHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCE
Confidence 355554 5578877643 48999999999999999999999999999987 8999999999999999999999999
Q ss_pred EEEEeCCeeeeeEecccCcchhhHhHHHHHHH
Q psy6451 207 LTLVKDSVTKDYIVGFTELGNCADFSTEMLEW 238 (332)
Q Consensus 207 l~~~~~G~~v~~~~G~~~~~~~~~f~~~~Le~ 238 (332)
+++|++|+.+....|....+.+..|..+.+..
T Consensus 110 l~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 110 LLLFDKGKMYQYEGGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred EEEEECCEEEEeeCCCCCHHHHHHHHHHHHHh
Confidence 99999999998888877777777777666643
No 46
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.67 E-value=2.1e-16 Score=125.86 Aligned_cols=88 Identities=14% Similarity=0.179 Sum_probs=77.6
Q ss_pred hHHHHHhccCCcEEEEEecCCChhhHHHHHHH---HHHHHHcC-CceEEEEECcC----ChHHHHhCCcccCcEEEEEe-
Q psy6451 141 KKFFDLCKKSPNMVVHFYKDGSVNCKILDEHM---KTLCKKHL-ETRFIKLNVER----APFLTERLRIKVIPTLTLVK- 211 (332)
Q Consensus 141 ~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l---~~La~~~~-~v~f~kVd~~~----~~~l~~~~~I~~~PTl~~~~- 211 (332)
+.|.+.+.++++|||.||++||++|+.+.|.+ .+++..+. .+.|++||++. .+.++++|+|.++||+++|.
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 46778888999999999999999999999988 67888877 59999999987 57899999999999999998
Q ss_pred -CCeeeeeEecccCcchh
Q psy6451 212 -DSVTKDYIVGFTELGNC 228 (332)
Q Consensus 212 -~G~~v~~~~G~~~~~~~ 228 (332)
+|+.+.++.|+.+...+
T Consensus 82 ~~g~~~~~~~G~~~~~~l 99 (104)
T cd02953 82 GGEPEPLRLPGFLTADEF 99 (104)
T ss_pred CCCCCCcccccccCHHHH
Confidence 79999999998776544
No 47
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.66 E-value=7.7e-16 Score=121.35 Aligned_cols=82 Identities=15% Similarity=0.243 Sum_probs=75.9
Q ss_pred hccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeeeeEecccCc
Q psy6451 147 CKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTEL 225 (332)
Q Consensus 147 ~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G~~~~ 225 (332)
.+.+++|++.||++||+.|+.+.|.++.+++++.+ +.|+++|++..+.++.+|+|.++||+++|++|+.+.++.|..+.
T Consensus 10 ~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~ 89 (97)
T cd02949 10 HESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMK 89 (97)
T ss_pred HhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccH
Confidence 35778999999999999999999999999999875 99999999999999999999999999999999999999998776
Q ss_pred chh
Q psy6451 226 GNC 228 (332)
Q Consensus 226 ~~~ 228 (332)
..+
T Consensus 90 ~~~ 92 (97)
T cd02949 90 SEY 92 (97)
T ss_pred HHH
Confidence 544
No 48
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.66 E-value=4.6e-16 Score=124.10 Aligned_cols=89 Identities=20% Similarity=0.287 Sum_probs=73.7
Q ss_pred hHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcC----CceEEEEECcCChHHHHhCCcccCcEEEEEeCCeee
Q psy6451 141 KKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL----ETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTK 216 (332)
Q Consensus 141 ~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~----~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v 216 (332)
+.|.+ +.++++++|+||+|||++|+.+.|.|++++..+. .+.++++|++..+.++++|+|.++||+++|++|. +
T Consensus 7 ~~~~~-~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~-~ 84 (104)
T cd03000 7 DSFKD-VRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL-A 84 (104)
T ss_pred hhhhh-hccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-c
Confidence 45555 4567899999999999999999999999999873 2889999999999999999999999999998774 4
Q ss_pred eeEecccCcchhhHh
Q psy6451 217 DYIVGFTELGNCADF 231 (332)
Q Consensus 217 ~~~~G~~~~~~~~~f 231 (332)
..+.|..+...+..|
T Consensus 85 ~~~~G~~~~~~l~~~ 99 (104)
T cd03000 85 YNYRGPRTKDDIVEF 99 (104)
T ss_pred eeecCCCCHHHHHHH
Confidence 567776554444333
No 49
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.66 E-value=7.8e-16 Score=121.69 Aligned_cols=89 Identities=15% Similarity=0.164 Sum_probs=74.6
Q ss_pred hhHHHHHhcc-CCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcEEEEEeCC-eee
Q psy6451 140 EKKFFDLCKK-SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLTLVKDS-VTK 216 (332)
Q Consensus 140 e~~~~~~~~~-~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G-~~v 216 (332)
...|.+.+.+ +.+++|.||+|||++|+.+.|.|..+++++++ +.|+.+|++.++.++++|+|+++||+++|.+| ...
T Consensus 7 ~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~ 86 (103)
T cd03001 7 DSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKNSP 86 (103)
T ss_pred HHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCCcce
Confidence 4567776644 56699999999999999999999999999876 89999999999999999999999999999988 445
Q ss_pred eeEecccCcchh
Q psy6451 217 DYIVGFTELGNC 228 (332)
Q Consensus 217 ~~~~G~~~~~~~ 228 (332)
..+.|......+
T Consensus 87 ~~~~g~~~~~~l 98 (103)
T cd03001 87 QDYQGGRTAKAI 98 (103)
T ss_pred eecCCCCCHHHH
Confidence 556665444333
No 50
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.65 E-value=6.5e-16 Score=121.52 Aligned_cols=92 Identities=20% Similarity=0.287 Sum_probs=80.0
Q ss_pred hhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC---ceEEEEECcCChHHHHhCCcccCcEEEEEeCCeee
Q psy6451 140 EKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE---TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTK 216 (332)
Q Consensus 140 e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~---v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v 216 (332)
.+.|.+.+.++++++|.||++||++|+.+.|.++.++..+.+ +.|+.+|+++++.++++|+|.++||+++|++|+.+
T Consensus 3 ~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~~ 82 (102)
T TIGR01126 3 ASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKKP 82 (102)
T ss_pred hhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCcc
Confidence 456777888899999999999999999999999999998875 99999999999999999999999999999988877
Q ss_pred eeEecccCcchhhHh
Q psy6451 217 DYIVGFTELGNCADF 231 (332)
Q Consensus 217 ~~~~G~~~~~~~~~f 231 (332)
..+.|......+..|
T Consensus 83 ~~~~g~~~~~~l~~~ 97 (102)
T TIGR01126 83 VDYEGGRDLEAIVEF 97 (102)
T ss_pred eeecCCCCHHHHHHH
Confidence 778886554444333
No 51
>PTZ00062 glutaredoxin; Provisional
Probab=99.64 E-value=3.6e-15 Score=133.01 Aligned_cols=148 Identities=10% Similarity=0.012 Sum_probs=103.4
Q ss_pred CChhHHHHHhccC-CcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEeCCeee
Q psy6451 138 PDEKKFFDLCKKS-PNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTK 216 (332)
Q Consensus 138 ~~e~~~~~~~~~~-~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v 216 (332)
.+..+|.+.++++ +.+|++|||+||++|+.|.|.+.+|+++||.++|++||++ |+|.++||+++|++|+.+
T Consensus 4 ~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 4 IKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCEEE
Confidence 3556788887765 8899999999999999999999999999999999999988 999999999999999999
Q ss_pred eeEecccCcchhhH------------hHHHHHHHHHHHcCCccccCCCCCCCc--hhhhhhhhhhhhcceEeecCCCCCc
Q psy6451 217 DYIVGFTELGNCAD------------FSTEMLEWRIAQAGVIDYEGDLFNPPD--IKKKQKKRMIEKKKIIRGRNSTGVI 282 (332)
Q Consensus 217 ~~~~G~~~~~~~~~------------f~~~~Le~~L~~~g~l~~~~~~~~~P~--~~~~~~~~~~~~~~~i~g~~~~~~~ 282 (332)
.+++|.... .+.. -+.+.++.++..+.++-++.+....|. ............+-...-.+-+++.
T Consensus 76 ~r~~G~~~~-~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~ 154 (204)
T PTZ00062 76 NSLEGCNTS-TLVSFIRGWAQKGSSEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDP 154 (204)
T ss_pred eeeeCCCHH-HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCH
Confidence 999997542 1111 234467777778888877775443222 1111111111212112224444455
Q ss_pred ccccccccccCC
Q psy6451 283 DYEAGVIDYEGD 294 (332)
Q Consensus 283 d~~~~~~~~~~~ 294 (332)
+.+.++..|.|-
T Consensus 155 ~~~~~l~~~sg~ 166 (204)
T PTZ00062 155 DLREELKVYSNW 166 (204)
T ss_pred HHHHHHHHHhCC
Confidence 555566666554
No 52
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.63 E-value=3.4e-15 Score=123.03 Aligned_cols=83 Identities=10% Similarity=0.150 Sum_probs=70.8
Q ss_pred ChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCCh-----------HHHHhCC----ccc
Q psy6451 139 DEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP-----------FLTERLR----IKV 203 (332)
Q Consensus 139 ~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~-----------~l~~~~~----I~~ 203 (332)
+.++|.+.+.+++.++|+||++|||+|+.+.|.|.+++++ ....|++||++..+ .+.+.|+ |.+
T Consensus 12 t~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 90 (122)
T TIGR01295 12 TVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMG 90 (122)
T ss_pred CHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCC
Confidence 3457889999999999999999999999999999999998 45788899988543 4456665 556
Q ss_pred CcEEEEEeCCeeeeeEecc
Q psy6451 204 IPTLTLVKDSVTKDYIVGF 222 (332)
Q Consensus 204 ~PTl~~~~~G~~v~~~~G~ 222 (332)
+||+++|++|+.+.+++|.
T Consensus 91 ~PT~v~~k~Gk~v~~~~G~ 109 (122)
T TIGR01295 91 TPTFVHITDGKQVSVRCGS 109 (122)
T ss_pred CCEEEEEeCCeEEEEEeCC
Confidence 9999999999999999994
No 53
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.62 E-value=2.4e-15 Score=116.98 Aligned_cols=88 Identities=22% Similarity=0.289 Sum_probs=78.1
Q ss_pred ChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHc---CCceEEEEECcCChHHHHhCCcccCcEEEEEeCC-e
Q psy6451 139 DEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKH---LETRFIKLNVERAPFLTERLRIKVIPTLTLVKDS-V 214 (332)
Q Consensus 139 ~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~---~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G-~ 214 (332)
++++|.+.+.+++++||.||++||++|+.+.|.+..++..+ ..+.|+.+|++..+.+++.|+|.++||+++|.+| .
T Consensus 4 ~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~~ 83 (101)
T cd02961 4 TDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSK 83 (101)
T ss_pred cHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCCc
Confidence 34588888888889999999999999999999999999998 4499999999999999999999999999999977 7
Q ss_pred eeeeEecccCcc
Q psy6451 215 TKDYIVGFTELG 226 (332)
Q Consensus 215 ~v~~~~G~~~~~ 226 (332)
...++.|.....
T Consensus 84 ~~~~~~g~~~~~ 95 (101)
T cd02961 84 EPVKYEGPRTLE 95 (101)
T ss_pred ccccCCCCcCHH
Confidence 777777765443
No 54
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.62 E-value=6.4e-15 Score=112.33 Aligned_cols=90 Identities=26% Similarity=0.467 Sum_probs=79.8
Q ss_pred HHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeeeeEec
Q psy6451 142 KFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVG 221 (332)
Q Consensus 142 ~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G 221 (332)
+|...+..+++++|.||++||++|+.+.+.+.+++..++++.|+.+|++..+.++..|++.++||+++|++|+.+..+.|
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g 81 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVG 81 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEec
Confidence 35566777799999999999999999999999999997789999999999999999999999999999999999999999
Q ss_pred ccCcchhhHh
Q psy6451 222 FTELGNCADF 231 (332)
Q Consensus 222 ~~~~~~~~~f 231 (332)
......+..|
T Consensus 82 ~~~~~~l~~~ 91 (93)
T cd02947 82 ADPKEELEEF 91 (93)
T ss_pred CCCHHHHHHH
Confidence 7665444333
No 55
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.60 E-value=4.5e-15 Score=117.28 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=74.0
Q ss_pred hHHHHHhcc-CCcEEEEEecCCChhhHHHHHHHHHHHHHcCC---ceEEEEECcCChHHHHhCCcccCcEEEEEeCCe--
Q psy6451 141 KKFFDLCKK-SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE---TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSV-- 214 (332)
Q Consensus 141 ~~~~~~~~~-~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~---v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~-- 214 (332)
.+|.+.+.+ +++++|.||+|||++|+.+.|.+.++++.+.+ +.|+++|++.+ .++..+++.++||+++|++|+
T Consensus 8 ~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~~~~~~ 86 (104)
T cd02995 8 KNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFPAGDKS 86 (104)
T ss_pred hhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEcCCCcC
Confidence 366666644 58999999999999999999999999998865 89999999987 578899999999999999987
Q ss_pred eeeeEecccCcchhhH
Q psy6451 215 TKDYIVGFTELGNCAD 230 (332)
Q Consensus 215 ~v~~~~G~~~~~~~~~ 230 (332)
...++.|..+...+..
T Consensus 87 ~~~~~~g~~~~~~l~~ 102 (104)
T cd02995 87 NPIKYEGDRTLEDLIK 102 (104)
T ss_pred CceEccCCcCHHHHHh
Confidence 5666777655544433
No 56
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.60 E-value=5.9e-15 Score=118.89 Aligned_cols=87 Identities=14% Similarity=0.242 Sum_probs=70.7
Q ss_pred ccccCChhHHHHHh---ccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC--ceEEEEECcC-ChHHHH-hCCcccCcE
Q psy6451 134 YEEIPDEKKFFDLC---KKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNVER-APFLTE-RLRIKVIPT 206 (332)
Q Consensus 134 ~~ei~~e~~~~~~~---~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~~~-~~~l~~-~~~I~~~PT 206 (332)
+.+++.+ +|...+ +++++++|.||+|||++|+.+.|.|.+++..+.+ +.|++||++. ...++. .|+|.++||
T Consensus 3 v~~~~~~-~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 3 VVTLSRA-EIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred ceeccHH-HHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 3444443 666665 3578999999999999999999999999999864 8999999997 566776 599999999
Q ss_pred EEEEeCC-eeeeeEec
Q psy6451 207 LTLVKDS-VTKDYIVG 221 (332)
Q Consensus 207 l~~~~~G-~~v~~~~G 221 (332)
+++|.+| .....+.|
T Consensus 82 i~~f~~~~~~~~~y~g 97 (109)
T cd02993 82 ILFFPKNSRQPIKYPS 97 (109)
T ss_pred EEEEcCCCCCceeccC
Confidence 9999865 45566666
No 57
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.57 E-value=7.3e-15 Score=119.44 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=74.0
Q ss_pred ChhHHHHHhccCCcEEEEEec--CCCh---hhHHHHHHHHHHHHHcCCceEEEEEC-----cCChHHHHhCCcc--cCcE
Q psy6451 139 DEKKFFDLCKKSPNMVVHFYK--DGSV---NCKILDEHMKTLCKKHLETRFIKLNV-----ERAPFLTERLRIK--VIPT 206 (332)
Q Consensus 139 ~e~~~~~~~~~~~~VvV~Fya--~wc~---~Ck~l~~~l~~La~~~~~v~f~kVd~-----~~~~~l~~~~~I~--~~PT 206 (332)
+...|.+++++++.|||.||| |||+ +|+.|+|.+...+.. +.+++||+ ..+..||++|+|+ ++||
T Consensus 7 ~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~---v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPT 83 (116)
T cd03007 7 DTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD---LLVAEVGIKDYGEKLNMELGERYKLDKESYPV 83 (116)
T ss_pred ChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc---eEEEEEecccccchhhHHHHHHhCCCcCCCCE
Confidence 345788999999999999999 9999 888888888776653 89999999 4578899999999 9999
Q ss_pred EEEEeCCe--eeeeEecc-cCcchhhHhH
Q psy6451 207 LTLVKDSV--TKDYIVGF-TELGNCADFS 232 (332)
Q Consensus 207 l~~~~~G~--~v~~~~G~-~~~~~~~~f~ 232 (332)
|++|++|. ....+.|. ....++..|+
T Consensus 84 l~lF~~g~~~~~~~Y~G~~r~~~~lv~~v 112 (116)
T cd03007 84 IYLFHGGDFENPVPYSGADVTVDALQRFL 112 (116)
T ss_pred EEEEeCCCcCCCccCCCCcccHHHHHHHH
Confidence 99999995 33467775 5555554444
No 58
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.57 E-value=9.1e-15 Score=115.57 Aligned_cols=85 Identities=18% Similarity=0.277 Sum_probs=71.9
Q ss_pred hHHHHHhccC-CcEEEEEecCCChhhHHHHHHHHHHHHHcC---CceEEEEECcC-ChHHHHhCCcccCcEEEEEeCC-e
Q psy6451 141 KKFFDLCKKS-PNMVVHFYKDGSVNCKILDEHMKTLCKKHL---ETRFIKLNVER-APFLTERLRIKVIPTLTLVKDS-V 214 (332)
Q Consensus 141 ~~~~~~~~~~-~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~---~v~f~kVd~~~-~~~l~~~~~I~~~PTl~~~~~G-~ 214 (332)
++|...+.+. +++||+||++||++|+.+.|.+..++..+. .+.|+++|++. .+.++++|+|.++||+++|.+| +
T Consensus 8 ~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~~~ 87 (105)
T cd02998 8 SNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKGST 87 (105)
T ss_pred hcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCCCC
Confidence 4666666544 599999999999999999999999999986 38999999999 9999999999999999999877 5
Q ss_pred eeeeEecccCc
Q psy6451 215 TKDYIVGFTEL 225 (332)
Q Consensus 215 ~v~~~~G~~~~ 225 (332)
....+.|....
T Consensus 88 ~~~~~~g~~~~ 98 (105)
T cd02998 88 EPVKYEGGRDL 98 (105)
T ss_pred CccccCCccCH
Confidence 55556664443
No 59
>PTZ00102 disulphide isomerase; Provisional
Probab=99.57 E-value=4.1e-14 Score=141.46 Aligned_cols=164 Identities=16% Similarity=0.184 Sum_probs=115.5
Q ss_pred CcceEecCCchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh-ceeeecccCCCCc-------------cc
Q psy6451 61 HGEYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPF-------------LT 126 (332)
Q Consensus 61 ~G~~~ev~~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~kvd~~k~pf-------------l~ 126 (332)
+-.+.+++. .+|..+......+++.|+ .+.....+.+.+.++|+.+.+ +.|+.+|+...+. ++
T Consensus 231 ~P~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~~~~gi~~~P~~~ 307 (477)
T PTZ00102 231 FPLFAEINA-ENYRRYISSGKDLVWFCG--TTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFGSHAKEHLLIEEFPGLA 307 (477)
T ss_pred CCceeecCc-cchHHHhcCCccEEEEec--CHHHHHHHHHHHHHHHHhccCceEEEEEechhcchhHHHhcCcccCceEE
Confidence 455667753 567777766665554443 345566788999999998854 5666666655322 11
Q ss_pred ccCCCCc--------------------------------------------ccccCChhHHHHH-hccCCcEEEEEecCC
Q psy6451 127 GQQGHGE--------------------------------------------YEEIPDEKKFFDL-CKKSPNMVVHFYKDG 161 (332)
Q Consensus 127 ~k~g~g~--------------------------------------------~~ei~~e~~~~~~-~~~~~~VvV~Fya~w 161 (332)
-....+. +..+ ..+.|.+. ...+++|+|.|||||
T Consensus 308 i~~~~~~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l-~~~~f~~~v~~~~k~vlv~f~a~w 386 (477)
T PTZ00102 308 YQSPAGRYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVV-VGNTFEEIVFKSDKDVLLEIYAPW 386 (477)
T ss_pred EEcCCcccCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEe-cccchHHHHhcCCCCEEEEEECCC
Confidence 1000000 1111 12446655 467799999999999
Q ss_pred ChhhHHHHHHHHHHHHHcCC---ceEEEEECcCChHHHHhCCcccCcEEEEEeCCeee-eeEecccCcchh
Q psy6451 162 SVNCKILDEHMKTLCKKHLE---TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTK-DYIVGFTELGNC 228 (332)
Q Consensus 162 c~~Ck~l~~~l~~La~~~~~---v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v-~~~~G~~~~~~~ 228 (332)
|++|+.+.|.|+++|..+.+ +.|+++|++.+..+++.|+++++||+++|++|..+ .++.|..+..++
T Consensus 387 C~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l 457 (477)
T PTZ00102 387 CGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGF 457 (477)
T ss_pred CHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEecCcCCHHHH
Confidence 99999999999999998764 88999999999999999999999999999988765 467786555443
No 60
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.56 E-value=1.9e-14 Score=117.78 Aligned_cols=79 Identities=18% Similarity=0.256 Sum_probs=70.6
Q ss_pred ccCChhHHHHHhcc--CCcEEEEEec-------CCChhhHHHHHHHHHHHHHcC-CceEEEEECcC-------ChHHHHh
Q psy6451 136 EIPDEKKFFDLCKK--SPNMVVHFYK-------DGSVNCKILDEHMKTLCKKHL-ETRFIKLNVER-------APFLTER 198 (332)
Q Consensus 136 ei~~e~~~~~~~~~--~~~VvV~Fya-------~wc~~Ck~l~~~l~~La~~~~-~v~f~kVd~~~-------~~~l~~~ 198 (332)
++.+..+|.+.+.. +++|||.||| +||++|+.+.|.+++++.+++ .++|++||++. ++.++..
T Consensus 5 ~~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 5 AVRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred cccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhc
Confidence 45677888888875 6899999999 999999999999999999999 59999999976 4588999
Q ss_pred CCcc-cCcEEEEEeCCe
Q psy6451 199 LRIK-VIPTLTLVKDSV 214 (332)
Q Consensus 199 ~~I~-~~PTl~~~~~G~ 214 (332)
|+|. ++||+++|++|.
T Consensus 85 ~~I~~~iPT~~~~~~~~ 101 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQ 101 (119)
T ss_pred cCcccCCCEEEEEcCCc
Confidence 9999 999999998774
No 61
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.55 E-value=3.8e-14 Score=116.65 Aligned_cols=88 Identities=11% Similarity=0.235 Sum_probs=72.7
Q ss_pred hHHHHHhccC-CcEEEEEecCCChhhHHHHHHHH---HHHHHcCC-ceEEEEECcCC-------------hHHHHhCCcc
Q psy6451 141 KKFFDLCKKS-PNMVVHFYKDGSVNCKILDEHMK---TLCKKHLE-TRFIKLNVERA-------------PFLTERLRIK 202 (332)
Q Consensus 141 ~~~~~~~~~~-~~VvV~Fya~wc~~Ck~l~~~l~---~La~~~~~-v~f~kVd~~~~-------------~~l~~~~~I~ 202 (332)
+++.+..+.+ ++|||.||++||++|+.+.|.+. .+...+.. +.+++||++.. ..++.+|+|.
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 4566777888 99999999999999999999874 55555544 78899998864 6889999999
Q ss_pred cCcEEEEEeC--CeeeeeEecccCcchh
Q psy6451 203 VIPTLTLVKD--SVTKDYIVGFTELGNC 228 (332)
Q Consensus 203 ~~PTl~~~~~--G~~v~~~~G~~~~~~~ 228 (332)
++||+++|.+ |+++.++.|......+
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~ 111 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLPPDEF 111 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCCHHHH
Confidence 9999999975 6999999998665433
No 62
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.52 E-value=7.7e-14 Score=113.53 Aligned_cols=86 Identities=17% Similarity=0.220 Sum_probs=69.8
Q ss_pred cccCChhHHHHHhccC-CcEEEEEecCCChhhHHHHHHHHHHHHHcC---C-ceEEEEECc--CChHHHHhCCcccCcEE
Q psy6451 135 EEIPDEKKFFDLCKKS-PNMVVHFYKDGSVNCKILDEHMKTLCKKHL---E-TRFIKLNVE--RAPFLTERLRIKVIPTL 207 (332)
Q Consensus 135 ~ei~~e~~~~~~~~~~-~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~---~-v~f~kVd~~--~~~~l~~~~~I~~~PTl 207 (332)
.+++ ...|.+.+..+ ++|||.||+|||++|+.+.|.|++++..+. + +.|+++|++ ..+.+++.|+|+++||+
T Consensus 4 ~~l~-~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~ 82 (114)
T cd02992 4 IVLD-AASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTL 82 (114)
T ss_pred EECC-HHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEE
Confidence 3443 45677776544 699999999999999999999999999764 3 899999975 46789999999999999
Q ss_pred EEEeCCeeeeeEecc
Q psy6451 208 TLVKDSVTKDYIVGF 222 (332)
Q Consensus 208 ~~~~~G~~v~~~~G~ 222 (332)
++|++|. .....|.
T Consensus 83 ~lf~~~~-~~~~~~~ 96 (114)
T cd02992 83 RYFPPFS-KEATDGL 96 (114)
T ss_pred EEECCCC-ccCCCCC
Confidence 9999987 4444443
No 63
>PTZ00102 disulphide isomerase; Provisional
Probab=99.50 E-value=1.2e-13 Score=138.02 Aligned_cols=100 Identities=14% Similarity=0.209 Sum_probs=85.1
Q ss_pred ccccCChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHc----CCceEEEEECcCChHHHHhCCcccCcEEEE
Q psy6451 134 YEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKH----LETRFIKLNVERAPFLTERLRIKVIPTLTL 209 (332)
Q Consensus 134 ~~ei~~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~----~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~ 209 (332)
+..+ +.+.|...+++++.++|.||||||++|+.+.|.+.+++..+ +.+.|++||++.++.+|++|+|.++||+++
T Consensus 34 v~~l-~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 112 (477)
T PTZ00102 34 VTVL-TDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKF 112 (477)
T ss_pred cEEc-chhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEE
Confidence 3344 45688888889999999999999999999999999998765 349999999999999999999999999999
Q ss_pred EeCCeeeeeEecccCcchhhHhHHHH
Q psy6451 210 VKDSVTKDYIVGFTELGNCADFSTEM 235 (332)
Q Consensus 210 ~~~G~~v~~~~G~~~~~~~~~f~~~~ 235 (332)
|++|..+ ++.|......+..|+.+.
T Consensus 113 ~~~g~~~-~y~g~~~~~~l~~~l~~~ 137 (477)
T PTZ00102 113 FNKGNPV-NYSGGRTADGIVSWIKKL 137 (477)
T ss_pred EECCceE-EecCCCCHHHHHHHHHHh
Confidence 9999887 888877666665555443
No 64
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.50 E-value=1.1e-13 Score=137.06 Aligned_cols=97 Identities=15% Similarity=0.255 Sum_probs=84.7
Q ss_pred ChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcC----CceEEEEECcCChHHHHhCCcccCcEEEEEeCCe
Q psy6451 139 DEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL----ETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSV 214 (332)
Q Consensus 139 ~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~----~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~ 214 (332)
+.+.|...++++++++|.||||||++|+.+.|.+.+++..+. .+.|++||++..+.+|++|+|.++||+++|++|+
T Consensus 7 ~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 86 (462)
T TIGR01130 7 TKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGE 86 (462)
T ss_pred CHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCc
Confidence 456888889999999999999999999999999999988753 3899999999999999999999999999999999
Q ss_pred e-eeeEecccCcchhhHhHHHH
Q psy6451 215 T-KDYIVGFTELGNCADFSTEM 235 (332)
Q Consensus 215 ~-v~~~~G~~~~~~~~~f~~~~ 235 (332)
. +..+.|......+..|+.+.
T Consensus 87 ~~~~~~~g~~~~~~l~~~i~~~ 108 (462)
T TIGR01130 87 DSVSDYNGPRDADGIVKYMKKQ 108 (462)
T ss_pred cceeEecCCCCHHHHHHHHHHh
Confidence 8 88888977766665555443
No 65
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.45 E-value=3.6e-13 Score=121.47 Aligned_cols=89 Identities=15% Similarity=0.237 Sum_probs=72.5
Q ss_pred HHHhccCCcEEEEEec---CCChhhHHHHHHHHHHHHHcCCc--eEEEEECcCChHHHHhCCcccCcEEEEEeCCeeee-
Q psy6451 144 FDLCKKSPNMVVHFYK---DGSVNCKILDEHMKTLCKKHLET--RFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKD- 217 (332)
Q Consensus 144 ~~~~~~~~~VvV~Fya---~wc~~Ck~l~~~l~~La~~~~~v--~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~- 217 (332)
++.+++ ...|+.|++ +||++|+.|.|.+++++..++.+ .++++|+++.+.++++|+|.++||+++|++|+.+.
T Consensus 14 ~~~~~~-~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~ 92 (215)
T TIGR02187 14 LKELKN-PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGI 92 (215)
T ss_pred HHhcCC-CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEE
Confidence 444444 444556887 99999999999999999999874 57777777999999999999999999999999984
Q ss_pred eEecccCcchhhHhHH
Q psy6451 218 YIVGFTELGNCADFST 233 (332)
Q Consensus 218 ~~~G~~~~~~~~~f~~ 233 (332)
++.|..+...+..|+.
T Consensus 93 ~~~G~~~~~~l~~~i~ 108 (215)
T TIGR02187 93 RYTGIPAGYEFAALIE 108 (215)
T ss_pred EEeecCCHHHHHHHHH
Confidence 8999877655545544
No 66
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.45 E-value=5.1e-13 Score=132.31 Aligned_cols=93 Identities=13% Similarity=0.198 Sum_probs=72.7
Q ss_pred hhHHHHHhc---cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC--ceEEEEECcCCh-HH-HHhCCcccCcEEEEEeC
Q psy6451 140 EKKFFDLCK---KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNVERAP-FL-TERLRIKVIPTLTLVKD 212 (332)
Q Consensus 140 e~~~~~~~~---~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~~~~~-~l-~~~~~I~~~PTl~~~~~ 212 (332)
..+|...++ .+++|||+||||||++|+.|.|.|+++|.+|.+ ++|++||++..+ .+ +++|+|.++||+++|++
T Consensus 358 ~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk~ 437 (463)
T TIGR00424 358 RPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFPK 437 (463)
T ss_pred HHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEEEC
Confidence 346777775 789999999999999999999999999999865 899999998754 34 47899999999999999
Q ss_pred Cee-eeeEe-cccCcchhhHhH
Q psy6451 213 SVT-KDYIV-GFTELGNCADFS 232 (332)
Q Consensus 213 G~~-v~~~~-G~~~~~~~~~f~ 232 (332)
|.. ...+. |..+...+..|+
T Consensus 438 g~~~~~~Y~~g~R~~e~L~~Fv 459 (463)
T TIGR00424 438 HSSRPIKYPSEKRDVDSLMSFV 459 (463)
T ss_pred CCCCceeCCCCCCCHHHHHHHH
Confidence 853 22343 344444444443
No 67
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.44 E-value=6.8e-13 Score=100.56 Aligned_cols=74 Identities=12% Similarity=0.188 Sum_probs=63.5
Q ss_pred EEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeeeeEecccCcchhhH
Q psy6451 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELGNCAD 230 (332)
Q Consensus 153 VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G~~~~~~~~~ 230 (332)
.|..||+|||++|+.+.|.|++++..+.. +.+++||++..+.++++|++.++||+++ +|+. ++.|..+.+.+..
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l~~ 76 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKEELVE 76 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCCCHHHHHH
Confidence 46789999999999999999999999865 8999999999999999999999999986 7863 6778765544433
No 68
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.44 E-value=4.5e-13 Score=105.98 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=65.7
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcc--cCcEEEEEeC--CeeeeeEec
Q psy6451 150 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIK--VIPTLTLVKD--SVTKDYIVG 221 (332)
Q Consensus 150 ~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~--~~PTl~~~~~--G~~v~~~~G 221 (332)
+.++++.||++||++|+.+.|.++++|++|.+ +.|+.||+++.+.+++.|++. ++||++++++ |+......|
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~ 88 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEE 88 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCcc
Confidence 68999999999999999999999999999977 999999999999999999999 9999999998 665544444
No 69
>KOG0912|consensus
Probab=99.44 E-value=1.5e-13 Score=126.24 Aligned_cols=102 Identities=16% Similarity=0.217 Sum_probs=90.9
Q ss_pred HHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHH----cCC--ceEEEEECcCChHHHHhCCcccCcEEEEEeCCee
Q psy6451 142 KFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKK----HLE--TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVT 215 (332)
Q Consensus 142 ~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~----~~~--v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~ 215 (332)
++..++.++..|+|.|||+||+.++.+.|++++.|.+ +|+ +.+++|||++...|+.+|.|..+||+.+|+||.+
T Consensus 5 N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~ 84 (375)
T KOG0912|consen 5 NIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEM 84 (375)
T ss_pred cHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccch
Confidence 5667788899999999999999999999999999875 464 8999999999999999999999999999999999
Q ss_pred ee-eEecccCcchhhHhHHHHHHHHHHHc
Q psy6451 216 KD-YIVGFTELGNCADFSTEMLEWRIAQA 243 (332)
Q Consensus 216 v~-~~~G~~~~~~~~~f~~~~Le~~L~~~ 243 (332)
.. .+.|-++..++-+|+..+++-.+...
T Consensus 85 ~~rEYRg~RsVeaL~efi~kq~s~~i~Ef 113 (375)
T KOG0912|consen 85 MKREYRGQRSVEALIEFIEKQLSDPINEF 113 (375)
T ss_pred hhhhhccchhHHHHHHHHHHHhccHHHHH
Confidence 88 58888888888888888887766544
No 70
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.44 E-value=3.8e-13 Score=110.04 Aligned_cols=87 Identities=14% Similarity=0.130 Sum_probs=67.7
Q ss_pred hHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcC-CceEEEEECcCCh-HHHHhCCccc--CcEEEEEe-CCee
Q psy6451 141 KKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAP-FLTERLRIKV--IPTLTLVK-DSVT 215 (332)
Q Consensus 141 ~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~-~v~f~kVd~~~~~-~l~~~~~I~~--~PTl~~~~-~G~~ 215 (332)
+.+.....++++|||.|||+||++|+.|.|.+..++.... ...|+.|+++..+ .+...|++.+ +||+++|. +|++
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCC
Confidence 3445555778999999999999999999999999876543 3577777777654 3467899987 99999995 9999
Q ss_pred eeeEecccCcch
Q psy6451 216 KDYIVGFTELGN 227 (332)
Q Consensus 216 v~~~~G~~~~~~ 227 (332)
+.++++.....+
T Consensus 90 ~~~~~~~~~~~~ 101 (117)
T cd02959 90 HPEIINKKGNPN 101 (117)
T ss_pred chhhccCCCCcc
Confidence 997666554443
No 71
>PLN02309 5'-adenylylsulfate reductase
Probab=99.43 E-value=7.1e-13 Score=131.19 Aligned_cols=98 Identities=12% Similarity=0.213 Sum_probs=75.8
Q ss_pred ccccCChhHHHHHh---ccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC--ceEEEEECc-CChHHHH-hCCcccCcE
Q psy6451 134 YEEIPDEKKFFDLC---KKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNVE-RAPFLTE-RLRIKVIPT 206 (332)
Q Consensus 134 ~~ei~~e~~~~~~~---~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~~-~~~~l~~-~~~I~~~PT 206 (332)
+.+++. ++|.+.+ +.++++||.||||||++|+.|.|.|++++.++.+ +.|++||++ ....++. +|+|.++||
T Consensus 347 Vv~Lt~-~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PT 425 (457)
T PLN02309 347 VVALSR-AGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPT 425 (457)
T ss_pred cEECCH-HHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeE
Confidence 444443 4666665 4789999999999999999999999999999864 999999999 7778886 699999999
Q ss_pred EEEEeCCeee-eeEec-ccCcchhhHhH
Q psy6451 207 LTLVKDSVTK-DYIVG-FTELGNCADFS 232 (332)
Q Consensus 207 l~~~~~G~~v-~~~~G-~~~~~~~~~f~ 232 (332)
+++|++|... ..+.| -.+..++..|+
T Consensus 426 il~f~~g~~~~v~Y~~~~R~~~~L~~fv 453 (457)
T PLN02309 426 ILLFPKNSSRPIKYPSEKRDVDSLLSFV 453 (457)
T ss_pred EEEEeCCCCCeeecCCCCcCHHHHHHHH
Confidence 9999988632 23433 34444444444
No 72
>PHA02125 thioredoxin-like protein
Probab=99.41 E-value=1.1e-12 Score=98.77 Aligned_cols=63 Identities=21% Similarity=0.414 Sum_probs=56.9
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeeeeEecccC
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTE 224 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G~~~ 224 (332)
|+.||+|||++|+.+.|.|+.++ ..|++||++..+.++.+|+|.++||++ +|+.+.++.|+..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~ 64 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPR 64 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCC
Confidence 78999999999999999998764 568999999999999999999999987 7999999999733
No 73
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.41 E-value=2.4e-13 Score=110.43 Aligned_cols=76 Identities=49% Similarity=0.884 Sum_probs=68.8
Q ss_pred hcCcceEecCCchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCcc
Q psy6451 59 LGHGEYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEY 134 (332)
Q Consensus 59 ~g~G~~~ev~~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~ 134 (332)
.|||.+.+|++.++|.+.++++..|||+||+|||++|+.|.+.|.+||+.++.++|+++|+++.+.+..+.+...+
T Consensus 1 ~~~g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~v 76 (113)
T cd02989 1 KGHGKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVL 76 (113)
T ss_pred CCCCCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccC
Confidence 3899999999999999999999999999999999999999999999999999999999999988766666554443
No 74
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.41 E-value=2.9e-12 Score=126.98 Aligned_cols=162 Identities=18% Similarity=0.217 Sum_probs=107.9
Q ss_pred CcceEecCCchhhhhhhcCCCcEEEEEc--cCCChhhhhhHHHHHHHHHhhh--hceeeecccCC--------------C
Q psy6451 61 HGEYEEIPDEKKFFDLCKKSPNMVVHFY--KDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVER--------------A 122 (332)
Q Consensus 61 ~G~~~ev~~e~~f~~~~~~~~~vvVhFy--~p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~~k--------------~ 122 (332)
+..+.+++ ..++....... +.++-|+ .+....|+.+...|..+|..|. .+.|..+++.. .
T Consensus 216 ~p~v~~~~-~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~~~~ 293 (462)
T TIGR01130 216 LPLVGEFT-QETAAKYFESG-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKF 293 (462)
T ss_pred CCceEeeC-CcchhhHhCCC-CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCCCccCC
Confidence 45566664 44555666554 4333333 4455568999999999999997 46666666642 2
Q ss_pred CcccccCCCC--cccc----c------------------------------------CChhHHHHHh-ccCCcEEEEEec
Q psy6451 123 PFLTGQQGHG--EYEE----I------------------------------------PDEKKFFDLC-KKSPNMVVHFYK 159 (332)
Q Consensus 123 pfl~~k~g~g--~~~e----i------------------------------------~~e~~~~~~~-~~~~~VvV~Fya 159 (332)
|.++.-...+ .|.. + -....|.+.+ ..++.|||.||+
T Consensus 294 P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a 373 (462)
T TIGR01130 294 PAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYA 373 (462)
T ss_pred ceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEEC
Confidence 3222111111 0000 0 0123344443 457899999999
Q ss_pred CCChhhHHHHHHHHHHHHHcCC----ceEEEEECcCChHHHHhCCcccCcEEEEEeCCeee--eeEecccCcc
Q psy6451 160 DGSVNCKILDEHMKTLCKKHLE----TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTK--DYIVGFTELG 226 (332)
Q Consensus 160 ~wc~~Ck~l~~~l~~La~~~~~----v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v--~~~~G~~~~~ 226 (332)
|||++|+.+.|.++.++..+.+ +.|+++|++.+.. .. ++|.++||+++|++|... ..+.|.....
T Consensus 374 ~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~-~~-~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~ 444 (462)
T TIGR01130 374 PWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDV-PP-FEVEGFPTIKFVPAGKKSEPVPYDGDRTLE 444 (462)
T ss_pred CCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCcc-CC-CCccccCEEEEEeCCCCcCceEecCcCCHH
Confidence 9999999999999999999865 7899999998753 33 999999999999988754 4566654443
No 75
>KOG4277|consensus
Probab=99.36 E-value=5.6e-13 Score=122.30 Aligned_cols=80 Identities=23% Similarity=0.301 Sum_probs=68.8
Q ss_pred ccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC----ceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeeeeEeccc
Q psy6451 148 KKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE----TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFT 223 (332)
Q Consensus 148 ~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~----v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G~~ 223 (332)
+....++|.||||||++|+.+.|++.+....... +++.|+|++..|.++.+|+|+++|||.+|++|-.+. +.|..
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~d-YRG~R 119 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAID-YRGGR 119 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeee-cCCCc
Confidence 5668999999999999999999999998766543 899999999999999999999999999999987665 45655
Q ss_pred Ccchh
Q psy6451 224 ELGNC 228 (332)
Q Consensus 224 ~~~~~ 228 (332)
..+.+
T Consensus 120 ~Kd~i 124 (468)
T KOG4277|consen 120 EKDAI 124 (468)
T ss_pred cHHHH
Confidence 55444
No 76
>KOG1672|consensus
Probab=99.35 E-value=7.3e-13 Score=114.63 Aligned_cols=138 Identities=33% Similarity=0.550 Sum_probs=94.2
Q ss_pred ccCCCCcccccCChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcE
Q psy6451 127 GQQGHGEYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPT 206 (332)
Q Consensus 127 ~k~g~g~~~ei~~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PT 206 (332)
...|||.|.+|.++++|++.++++..||+|||.|...+|+.|+ ..|..- |.++ ++
T Consensus 61 ~~~GhG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimD---khLe~L-----------------Ak~h-----~e 115 (211)
T KOG1672|consen 61 LSKGHGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMD---KHLEIL-----------------AKRH-----VE 115 (211)
T ss_pred HHcCCceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHH---HHHHHH-----------------HHhc-----cc
Confidence 4689999999999999999999999999999999999999998 444321 2211 12
Q ss_pred EEEEe-CCeeeeeEecccCcchhhHhHHHHHHHHHHHcCCccccCCCCCCCchhhhhhhhhhhhcceEeecCCCCC-ccc
Q psy6451 207 LTLVK-DSVTKDYIVGFTELGNCADFSTEMLEWRIAQAGVIDYEGDLFNPPDIKKKQKKRMIEKKKIIRGRNSTGV-IDY 284 (332)
Q Consensus 207 l~~~~-~G~~v~~~~G~~~~~~~~~f~~~~Le~~L~~~g~l~~~~~~~~~P~~~~~~~~~~~~~~~~i~g~~~~~~-~d~ 284 (332)
..+++ |-+ ...|+...|..... |.+.... .+...++|+||..+++ +||
T Consensus 116 TrFikvnae-------------~~PFlv~kL~IkVL--------------P~v~l~k---~g~~~D~iVGF~dLGnkDdF 165 (211)
T KOG1672|consen 116 TRFIKVNAE-------------KAPFLVTKLNIKVL--------------PTVALFK---NGKTVDYVVGFTDLGNKDDF 165 (211)
T ss_pred ceEEEEecc-------------cCceeeeeeeeeEe--------------eeEEEEE---cCEEEEEEeeHhhcCCCCcC
Confidence 22222 111 13444444443332 3333222 3377899999988876 555
Q ss_pred c----------cccccccCCCCCCcchhhhhccccccccccccCCCCCCCCC
Q psy6451 285 E----------AGVIDYEGDLFNPPDIKKKQKKRLIEKKKIIRGRNSSDEDS 326 (332)
Q Consensus 285 ~----------~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (332)
. |.||.|.|.++.||... ...+++||++..+|+|+
T Consensus 166 ~te~LE~rL~~S~vi~~~~~~s~~~~~~-------~~~~~~ir~~~~~DSD~ 210 (211)
T KOG1672|consen 166 TTETLENRLAKSGVIDYTGELSKPKKVN-------TSIRRSVRSSAESDSDS 210 (211)
T ss_pred cHHHHHHHHhhccceecccccccCccch-------hhHHHHhhcCccccccC
Confidence 4 99999999999998654 24478899985544443
No 77
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.31 E-value=1.2e-11 Score=93.32 Aligned_cols=62 Identities=18% Similarity=0.307 Sum_probs=54.0
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeeeeEecc
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGF 222 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G~ 222 (332)
.|.||++||++|+.+.|.+++++++++. +.|++|| .+..+.+|++.++||+++ ||+.+ +.|.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~ 64 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGK 64 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEec
Confidence 3789999999999999999999999976 8888887 344578899999999999 99888 6675
No 78
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.31 E-value=2.4e-12 Score=104.36 Aligned_cols=74 Identities=42% Similarity=0.698 Sum_probs=64.3
Q ss_pred cCcceEecCCchhhhhhhcCC---CcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCccc
Q psy6451 60 GHGEYEEIPDEKKFFDLCKKS---PNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYE 135 (332)
Q Consensus 60 g~G~~~ev~~e~~f~~~~~~~---~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ 135 (332)
+||.+.+|++ ++|.+.+.+. .+|||+||+|||++|+.|.+.|..+|..++++.|+++|+++. .++.+.+...++
T Consensus 2 ~~g~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~P 78 (113)
T cd02957 2 GFGEVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLP 78 (113)
T ss_pred CCceEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCC
Confidence 6999999987 8999998765 789999999999999999999999999999999999999876 556555554443
No 79
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.30 E-value=3.6e-11 Score=99.24 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=68.7
Q ss_pred hhHHHHHhccCCcEEEEEecCCChhhHHHHHH-H--HHHHHHc-CCceEEEEECcCChHHHH--------hCCcccCcEE
Q psy6451 140 EKKFFDLCKKSPNMVVHFYKDGSVNCKILDEH-M--KTLCKKH-LETRFIKLNVERAPFLTE--------RLRIKVIPTL 207 (332)
Q Consensus 140 e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~-l--~~La~~~-~~v~f~kVd~~~~~~l~~--------~~~I~~~PTl 207 (332)
++.+....+++++|+|+||++||+.|+.|.+. + .+++... ....++++|+++.+.+++ .|++.++||+
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~ 84 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLN 84 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEE
Confidence 45566777889999999999999999999873 2 3455543 468899999999888765 3689999999
Q ss_pred EEE-eCCeeeeeEecccC
Q psy6451 208 TLV-KDSVTKDYIVGFTE 224 (332)
Q Consensus 208 ~~~-~~G~~v~~~~G~~~ 224 (332)
+++ .+|+++....++..
T Consensus 85 vfl~~~G~~~~~~~~~~~ 102 (124)
T cd02955 85 VFLTPDLKPFFGGTYFPP 102 (124)
T ss_pred EEECCCCCEEeeeeecCC
Confidence 999 58999998877733
No 80
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.30 E-value=8.3e-13 Score=117.09 Aligned_cols=106 Identities=24% Similarity=0.412 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCCchhhhhhhcCCCcE
Q psy6451 4 VLQDTVLNVAKNVEKQIDEEIYRLENLDLDSIEKLREDHLKKLKAKAKRNQELKALGHGEYEEIPDEKKFFDLCKKSPNM 83 (332)
Q Consensus 4 ~~~~~~~~~~~~~e~~~d~~~~~l~~~d~~~l~~~r~~Rl~el~~~~~~~~~~~~~g~G~~~ev~~e~~f~~~~~~~~~v 83 (332)
.+++.+++.+.+++++.|++ + ..+.+++.|-+.|++..+.................+|+.. .+..+|
T Consensus 39 ~~e~~~~~el~~~~d~~~d~-~-----~Le~yR~kRl~el~~~~~~~~~G~v~eis~~~f~~eV~~a-------s~~~~V 105 (192)
T cd02988 39 ALEKKLLDELDEELDEEEDD-R-----FLEEYRRKRLAEMKALAEKSKFGEVYEISKPDYVREVTEA-------SKDTWV 105 (192)
T ss_pred HhhhccHHHHHHhhcccccH-H-----HHHHHHHHHHHHHHHhhhhCCCCeEEEeCHHHHHHHHHhc-------CCCCEE
Confidence 34555556666555443331 1 3348999999999988877655443222222223334321 235789
Q ss_pred EEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCC
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA 122 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~ 122 (332)
|||||+|||+.|++|+++|..||..|+.++|++++++++
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~ 144 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC 144 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh
Confidence 999999999999999999999999999999999999864
No 81
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.29 E-value=1.7e-11 Score=89.64 Aligned_cols=61 Identities=8% Similarity=0.167 Sum_probs=55.6
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEeCCeee
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTK 216 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v 216 (332)
|+.||++||++|+.+.+.+++++..++++.|..+|++..+.++++|++.++||+++ +|+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 67899999999999999999999988889999999999999999999999999865 66533
No 82
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.25 E-value=3.1e-11 Score=123.60 Aligned_cols=95 Identities=15% Similarity=0.291 Sum_probs=78.8
Q ss_pred cccccCChhHHHHHhc----cCCcEEEEEecCCChhhHHHHHHH---HHHHHHcCCceEEEEECcCC----hHHHHhCCc
Q psy6451 133 EYEEIPDEKKFFDLCK----KSPNMVVHFYKDGSVNCKILDEHM---KTLCKKHLETRFIKLNVERA----PFLTERLRI 201 (332)
Q Consensus 133 ~~~ei~~e~~~~~~~~----~~~~VvV~Fya~wc~~Ck~l~~~l---~~La~~~~~v~f~kVd~~~~----~~l~~~~~I 201 (332)
...++.+.+++.+.+. ++++|+|+|||+||++|+.+.+.+ .++.+.+.++.++++|++++ ..++++|++
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v 532 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNV 532 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC
Confidence 4677788778777663 468999999999999999999875 67788888899999999864 578999999
Q ss_pred ccCcEEEEEe-CCee--eeeEecccCcch
Q psy6451 202 KVIPTLTLVK-DSVT--KDYIVGFTELGN 227 (332)
Q Consensus 202 ~~~PTl~~~~-~G~~--v~~~~G~~~~~~ 227 (332)
.++||+++|. +|++ +.++.|..+...
T Consensus 533 ~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~ 561 (571)
T PRK00293 533 LGLPTILFFDAQGQEIPDARVTGFMDAAA 561 (571)
T ss_pred CCCCEEEEECCCCCCcccccccCCCCHHH
Confidence 9999999996 8988 468888765443
No 83
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.24 E-value=8.9e-11 Score=97.41 Aligned_cols=97 Identities=11% Similarity=0.157 Sum_probs=82.1
Q ss_pred hHHHHHhccCCcEEEEEecC--CChhhHHHHHHHHHHHHHcC-C-ceEEEEECcCChHHHHhCCcccCcEEEEEeCCeee
Q psy6451 141 KKFFDLCKKSPNMVVHFYKD--GSVNCKILDEHMKTLCKKHL-E-TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTK 216 (332)
Q Consensus 141 ~~~~~~~~~~~~VvV~Fya~--wc~~Ck~l~~~l~~La~~~~-~-v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v 216 (332)
..+.+.+...+..|+.|-.+ .++.+.-++=+|++|+.+|+ . ++|++||++.++.++.+|+|.++||+++|++|+.+
T Consensus 25 ~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v 104 (132)
T PRK11509 25 SRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYR 104 (132)
T ss_pred ccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEE
Confidence 45666776677666666544 57899999999999999998 3 89999999999999999999999999999999999
Q ss_pred eeEecccCcchhhHhHHHHHH
Q psy6451 217 DYIVGFTELGNCADFSTEMLE 237 (332)
Q Consensus 217 ~~~~G~~~~~~~~~f~~~~Le 237 (332)
.+++|..+...+..++.+.|.
T Consensus 105 ~~i~G~~~k~~l~~~I~~~L~ 125 (132)
T PRK11509 105 GVLNGIHPWAELINLMRGLVE 125 (132)
T ss_pred EEEeCcCCHHHHHHHHHHHhc
Confidence 999999988776666555544
No 84
>PTZ00062 glutaredoxin; Provisional
Probab=99.24 E-value=1.4e-10 Score=103.52 Aligned_cols=142 Identities=10% Similarity=0.076 Sum_probs=93.8
Q ss_pred CCchhhhhhhcCC-CcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCC----CCcccc-cCCC------C-cc
Q psy6451 68 PDEKKFFDLCKKS-PNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVER----APFLTG-QQGH------G-EY 134 (332)
Q Consensus 68 ~~e~~f~~~~~~~-~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k----~pfl~~-k~g~------g-~~ 134 (332)
.+..+|.++++.+ ..+|++|+++||+.|+.|++.|..|+..||.+.|++|+++. .|+++- +.|. | ..
T Consensus 4 ~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d~~V~~vPtfv~~~~g~~i~r~~G~~~ 83 (204)
T PTZ00062 4 IKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLADANNEYGVFEFYQNSQLINSLEGCNT 83 (204)
T ss_pred CCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccccCcccceEEEEEECCEEEeeeeCCCH
Confidence 3566788888754 67899999999999999999999999999999999999873 243332 2221 1 00
Q ss_pred ccc----------CC---hhHHHHHhccCCcEEEEEe----cCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHH
Q psy6451 135 EEI----------PD---EKKFFDLCKKSPNMVVHFY----KDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTE 197 (332)
Q Consensus 135 ~ei----------~~---e~~~~~~~~~~~~VvV~Fy----a~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~ 197 (332)
.++ .. ...+.+.+-++.+|+|.-- .|||+.|+.+...|... ++.|..+|+...+.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~ 158 (204)
T PTZ00062 84 STLVSFIRGWAQKGSSEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLRE 158 (204)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHH
Confidence 000 11 1222333334456655544 37999999998777753 47778888887765533
Q ss_pred h----CCcccCcEEEEEeCCeee
Q psy6451 198 R----LRIKVIPTLTLVKDSVTK 216 (332)
Q Consensus 198 ~----~~I~~~PTl~~~~~G~~v 216 (332)
. .+-..+|.+ |.+|+.+
T Consensus 159 ~l~~~sg~~TvPqV--fI~G~~I 179 (204)
T PTZ00062 159 ELKVYSNWPTYPQL--YVNGELI 179 (204)
T ss_pred HHHHHhCCCCCCeE--EECCEEE
Confidence 3 344456654 4677654
No 85
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.23 E-value=1.1e-10 Score=102.89 Aligned_cols=91 Identities=11% Similarity=0.134 Sum_probs=71.2
Q ss_pred ccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCCh-----------------------HHHHhCCcccC
Q psy6451 148 KKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP-----------------------FLTERLRIKVI 204 (332)
Q Consensus 148 ~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~-----------------------~l~~~~~I~~~ 204 (332)
.+++++||+||++||++|+...|.|.+++.+ ++.++.|+.+..+ .++..|++.++
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 4689999999999999999999999999764 6788888865432 23457899999
Q ss_pred cEEEEE-eCCeeeeeEecccCcchhhHhHHHHHHHHH
Q psy6451 205 PTLTLV-KDSVTKDYIVGFTELGNCADFSTEMLEWRI 240 (332)
Q Consensus 205 PTl~~~-~~G~~v~~~~G~~~~~~~~~f~~~~Le~~L 240 (332)
|+.+++ ++|+++.++.|..+...++.++...++..+
T Consensus 144 P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~~ 180 (185)
T PRK15412 144 PETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKYS 180 (185)
T ss_pred CeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 976666 699999999998776666555555555444
No 86
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.23 E-value=5e-11 Score=98.07 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=63.0
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEEC-----------------------cCChHHHHhCCcccCc
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNV-----------------------ERAPFLTERLRIKVIP 205 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~-----------------------~~~~~l~~~~~I~~~P 205 (332)
+++++||+||++||++|+.+.|.|+++++++ ++.|+.|+. +....++..|++.++|
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P 102 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP 102 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence 5789999999999999999999999999887 366666653 3345678889999999
Q ss_pred EEEEE-eCCeeeeeEecccCcc
Q psy6451 206 TLTLV-KDSVTKDYIVGFTELG 226 (332)
Q Consensus 206 Tl~~~-~~G~~v~~~~G~~~~~ 226 (332)
+.+++ ++|+++.++.|..+..
T Consensus 103 ~~~~ld~~G~v~~~~~G~~~~~ 124 (127)
T cd03010 103 ETFLIDGDGIIRYKHVGPLTPE 124 (127)
T ss_pred eEEEECCCceEEEEEeccCChH
Confidence 55555 7999999999976543
No 87
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.22 E-value=7.3e-11 Score=100.97 Aligned_cols=80 Identities=15% Similarity=0.275 Sum_probs=60.1
Q ss_pred hccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCC------------hHHH-HhC---CcccCcEEEEE
Q psy6451 147 CKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA------------PFLT-ERL---RIKVIPTLTLV 210 (332)
Q Consensus 147 ~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~------------~~l~-~~~---~I~~~PTl~~~ 210 (332)
...+.+.||+|||+||++|+...|.|++++++| ++.++.|+.+.. +... ..| ++.++||.+++
T Consensus 47 ~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 47 ANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred hhcCCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 345677899999999999999999999999998 466666665542 2232 345 88999999999
Q ss_pred e-CCe-eeeeEecccCcch
Q psy6451 211 K-DSV-TKDYIVGFTELGN 227 (332)
Q Consensus 211 ~-~G~-~v~~~~G~~~~~~ 227 (332)
. +|. .+....|..+...
T Consensus 126 D~~G~~i~~~~~G~~s~~~ 144 (153)
T TIGR02738 126 NVNTRKAYPVLQGAVDEAE 144 (153)
T ss_pred eCCCCEEEEEeecccCHHH
Confidence 4 555 4667888766544
No 88
>KOG0191|consensus
Probab=99.21 E-value=3.2e-11 Score=117.90 Aligned_cols=103 Identities=22% Similarity=0.221 Sum_probs=86.4
Q ss_pred ChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeee
Q psy6451 139 DEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKD 217 (332)
Q Consensus 139 ~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~ 217 (332)
....+...+....+++|+||+|||++|+.+.|.+.++++.+.+ +.++.||++....+|+.|+|+++||+.+|..|....
T Consensus 36 ~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~ 115 (383)
T KOG0191|consen 36 LDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPI 115 (383)
T ss_pred ccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCcee
Confidence 3444555567889999999999999999999999999999988 999999999999999999999999999999995566
Q ss_pred eEecccCcchhhHhHHHHHHHHHH
Q psy6451 218 YIVGFTELGNCADFSTEMLEWRIA 241 (332)
Q Consensus 218 ~~~G~~~~~~~~~f~~~~Le~~L~ 241 (332)
.+.|......+.+|....++....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~ 139 (383)
T KOG0191|consen 116 DYSGPRNAESLAEFLIKELEPSVK 139 (383)
T ss_pred eccCcccHHHHHHHHHHhhccccc
Confidence 666766666666676666665543
No 89
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.18 E-value=9.3e-11 Score=117.75 Aligned_cols=86 Identities=15% Similarity=0.240 Sum_probs=71.4
Q ss_pred ccCCcEEEEEecCCChhhHHHHHHHHHHHHHcC--CceEEEEE----------------------------CcCChHHHH
Q psy6451 148 KKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLN----------------------------VERAPFLTE 197 (332)
Q Consensus 148 ~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~--~v~f~kVd----------------------------~~~~~~l~~ 197 (332)
.++++|||+|||+||++|+.+.|.|++|++++. ++.|+.|. ++....+++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 368999999999999999999999999999886 46666553 234556889
Q ss_pred hCCcccCcEEEEE-eCCeeeeeEecccCcchhhHhHH
Q psy6451 198 RLRIKVIPTLTLV-KDSVTKDYIVGFTELGNCADFST 233 (332)
Q Consensus 198 ~~~I~~~PTl~~~-~~G~~v~~~~G~~~~~~~~~f~~ 233 (332)
.|+|.++||++++ ++|+++..+.|..+...+..++.
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 9999999999665 79999999999988776656555
No 90
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.16 E-value=6.6e-11 Score=95.00 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=60.6
Q ss_pred ccCCcEEEEEecCCChhhHHHHHHHHHH---HHHcC-CceEEEEECcCC--------------------hHHHHhCCccc
Q psy6451 148 KKSPNMVVHFYKDGSVNCKILDEHMKTL---CKKHL-ETRFIKLNVERA--------------------PFLTERLRIKV 203 (332)
Q Consensus 148 ~~~~~VvV~Fya~wc~~Ck~l~~~l~~L---a~~~~-~v~f~kVd~~~~--------------------~~l~~~~~I~~ 203 (332)
.+++++|+.||+|||++|+.+.+.+... ...+. .+.++.++++.. ..+++.|+|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 3578999999999999999999998864 33443 377888887643 35889999999
Q ss_pred CcEEEEEe-CCeeeeeEecccCcchh
Q psy6451 204 IPTLTLVK-DSVTKDYIVGFTELGNC 228 (332)
Q Consensus 204 ~PTl~~~~-~G~~v~~~~G~~~~~~~ 228 (332)
+||++++. +|+.+.++.|+.+..++
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l 108 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEEL 108 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHH
Confidence 99999995 89999999998776544
No 91
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.16 E-value=2.1e-10 Score=107.04 Aligned_cols=78 Identities=12% Similarity=0.208 Sum_probs=62.0
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcC-----------ChHHHHhCCcccCcEEEEEeC-Ceee
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVER-----------APFLTERLRIKVIPTLTLVKD-SVTK 216 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~-----------~~~l~~~~~I~~~PTl~~~~~-G~~v 216 (332)
+++++||+||++||++|+.+.|.|..++.+|. +.++.|+++. ...++++|+|.++||++++.. |..+
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence 46899999999999999999999999999985 5666666554 346899999999999999985 5555
Q ss_pred e-eEecccCcch
Q psy6451 217 D-YIVGFTELGN 227 (332)
Q Consensus 217 ~-~~~G~~~~~~ 227 (332)
. ...|+.+...
T Consensus 244 ~~v~~G~~s~~e 255 (271)
T TIGR02740 244 TPIGFGVMSADE 255 (271)
T ss_pred EEEEeCCCCHHH
Confidence 4 4557665543
No 92
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.15 E-value=2.2e-10 Score=89.16 Aligned_cols=67 Identities=10% Similarity=0.085 Sum_probs=61.1
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeeee
Q psy6451 150 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDY 218 (332)
Q Consensus 150 ~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~ 218 (332)
++.-+..|++|||++|..+.+.+++++..++++.|..+|++..+.++++|+|.++||+++ ||+.+..
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~ 78 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF 78 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe
Confidence 455588899999999999999999999999999999999999999999999999999964 8987764
No 93
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.15 E-value=2e-11 Score=106.71 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=66.1
Q ss_pred ChHHHHHHHHHHHHHHHHHH-HHHHHHHHhc-CcceEecCCchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHh
Q psy6451 31 DLDSIEKLREDHLKKLKAKA-KRNQELKALG-HGEYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKK 108 (332)
Q Consensus 31 d~~~l~~~r~~Rl~el~~~~-~~~~~~~~~g-~G~~~ev~~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~ 108 (332)
..+.+++.|-+.|++...+. .......... .....+|+ -..++.+||||||+|||+.|+.|+++|..||..
T Consensus 39 ~l~~~R~~R~~el~~~~~~~~~~g~v~ei~~~~~f~~~v~-------~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~ 111 (175)
T cd02987 39 FLQQYREQRMQEMHAKLPFGRRFGKVYELDSGEQFLDAID-------KEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAE 111 (175)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCeEEEcCCHHHHHHHHH-------hcCCCcEEEEEEECCCCchHHHHHHHHHHHHHH
Confidence 56689999999998854332 2222111111 11112222 122467899999999999999999999999999
Q ss_pred hhhceeeecccCCCCcccccCCCCccc
Q psy6451 109 HLETRFIKLNVERAPFLTGQQGHGEYE 135 (332)
Q Consensus 109 ~~~~~f~kvd~~k~pfl~~k~g~g~~~ 135 (332)
|+.++|+++++++. .++...+...++
T Consensus 112 ~~~vkF~kVd~d~~-~l~~~f~v~~vP 137 (175)
T cd02987 112 YPAVKFCKIRASAT-GASDEFDTDALP 137 (175)
T ss_pred CCCeEEEEEeccch-hhHHhCCCCCCC
Confidence 99999999999975 555555544443
No 94
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.14 E-value=2.6e-10 Score=99.31 Aligned_cols=87 Identities=11% Similarity=0.057 Sum_probs=65.7
Q ss_pred hccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECc-----------------------CChHHHHhCCccc
Q psy6451 147 CKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVE-----------------------RAPFLTERLRIKV 203 (332)
Q Consensus 147 ~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~-----------------------~~~~l~~~~~I~~ 203 (332)
..+++++||+||++||++|+.+.|.+++++++ ++.++.|+.+ ....++..|++.+
T Consensus 60 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 60 FIQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred hcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 34679999999999999999999999999865 3666666642 2234667899999
Q ss_pred CcEEEEE-eCCeeeeeEecccCcchhhHhHHHH
Q psy6451 204 IPTLTLV-KDSVTKDYIVGFTELGNCADFSTEM 235 (332)
Q Consensus 204 ~PTl~~~-~~G~~v~~~~G~~~~~~~~~f~~~~ 235 (332)
+|+.+++ ++|+++.++.|..+...+..++.+.
T Consensus 138 ~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 138 APETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred CCeEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 9965555 7999999999976655544444433
No 95
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.13 E-value=2.3e-10 Score=94.66 Aligned_cols=70 Identities=16% Similarity=0.264 Sum_probs=57.7
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcC----CceEEEEECcCC------------------------hHHHHhCC
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL----ETRFIKLNVERA------------------------PFLTERLR 200 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~----~v~f~kVd~~~~------------------------~~l~~~~~ 200 (332)
++++|||+||++||++|+.+.|.|.++..++. ++.++.|+++.. ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 56899999999999999999999999887763 466666666533 35778999
Q ss_pred cccCcEEEEEe-CCeeeee
Q psy6451 201 IKVIPTLTLVK-DSVTKDY 218 (332)
Q Consensus 201 I~~~PTl~~~~-~G~~v~~ 218 (332)
|.++||++++. +|+++.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 99999999995 8987765
No 96
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.10 E-value=1.4e-10 Score=94.26 Aligned_cols=77 Identities=9% Similarity=0.048 Sum_probs=62.5
Q ss_pred cCcceEecCCchhhhhh---hcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh-ceeeecccCCCCcccc-cCCCCcc
Q psy6451 60 GHGEYEEIPDEKKFFDL---CKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTG-QQGHGEY 134 (332)
Q Consensus 60 g~G~~~ev~~e~~f~~~---~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~kvd~~k~pfl~~-k~g~g~~ 134 (332)
+-+.|.+++ +.+|.++ ++....+||.||+|||++|+.|.|.|.++|..+.+ +.|+++|++..+-++. +.+..++
T Consensus 7 ~~~~v~~l~-~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~ 85 (113)
T cd03006 7 QRSPVLDFY-KGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYF 85 (113)
T ss_pred CCCCeEEec-hhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCccc
Confidence 345788885 5788876 57888999999999999999999999999999876 7889999997776663 5565555
Q ss_pred ccc
Q psy6451 135 EEI 137 (332)
Q Consensus 135 ~ei 137 (332)
+++
T Consensus 86 PTl 88 (113)
T cd03006 86 PVI 88 (113)
T ss_pred CEE
Confidence 544
No 97
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.10 E-value=4.7e-10 Score=95.15 Aligned_cols=70 Identities=13% Similarity=0.295 Sum_probs=57.5
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcC---------CceEEEEECcCC-------------------------hH
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL---------ETRFIKLNVERA-------------------------PF 194 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~---------~v~f~kVd~~~~-------------------------~~ 194 (332)
++++|+|+|||+||++|+...|.|.++..++. ++.++.|+.+.. ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 57999999999999999999999999876442 377777776642 13
Q ss_pred HHHhCCcccCcEEEEEe-CCeeeee
Q psy6451 195 LTERLRIKVIPTLTLVK-DSVTKDY 218 (332)
Q Consensus 195 l~~~~~I~~~PTl~~~~-~G~~v~~ 218 (332)
++..|++.++||++++. +|+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 67789999999999995 8988866
No 98
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.10 E-value=4e-10 Score=93.64 Aligned_cols=71 Identities=15% Similarity=0.283 Sum_probs=57.6
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcC----CceEEEEECcCCh-------------------------HHHHhC
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL----ETRFIKLNVERAP-------------------------FLTERL 199 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~----~v~f~kVd~~~~~-------------------------~l~~~~ 199 (332)
++++|||+||++||++|+.+.|.+.++++++. ++.++.|+++..+ .+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 57899999999999999999999999987764 3667767665432 456779
Q ss_pred CcccCcEEEEEe-CCeeeeeE
Q psy6451 200 RIKVIPTLTLVK-DSVTKDYI 219 (332)
Q Consensus 200 ~I~~~PTl~~~~-~G~~v~~~ 219 (332)
+|.++||++++. +|+++.+.
T Consensus 96 ~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred CCCCCCEEEEECCCCCEEchh
Confidence 999999999995 88877653
No 99
>KOG0914|consensus
Probab=99.08 E-value=5.2e-11 Score=104.90 Aligned_cols=144 Identities=15% Similarity=0.137 Sum_probs=112.3
Q ss_pred EEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCC--CcccccCCCCcccccCChhHHHHHhcc--CCcEEEEEecC
Q psy6451 85 VHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA--PFLTGQQGHGEYEEIPDEKKFFDLCKK--SPNMVVHFYKD 160 (332)
Q Consensus 85 VhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~--pfl~~k~g~g~~~ei~~e~~~~~~~~~--~~~VvV~Fya~ 160 (332)
.||-++.+-..|+.+-.|+..|+..+++-|+-+..--. ---..-+|.+.++-.++.+.+++.+.. ...++|.|||.
T Consensus 75 e~yvansfLysKia~~~l~~~~D~r~gl~fillc~vv~ml~~eP~y~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ 154 (265)
T KOG0914|consen 75 EAYVANSFLYSKIANIILFLRADIRVGLWFILLCSVVYMLAPEPAYSGPETIKYFTNMQLEDEELDRNKRTYWLIEFFAC 154 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCchheeeecchhhHHHHhccCCceEEEEEEEee
Confidence 34556677888999999999999888776543321100 001123566667777777777777754 47789999999
Q ss_pred CChhhHHHHHHHHHHHHHcCC--ceEEEEECcCChHHHHhCCc------ccCcEEEEEeCCeeeeeEecccCcchh
Q psy6451 161 GSVNCKILDEHMKTLCKKHLE--TRFIKLNVERAPFLTERLRI------KVIPTLTLVKDSVTKDYIVGFTELGNC 228 (332)
Q Consensus 161 wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~~~~~~l~~~~~I------~~~PTl~~~~~G~~v~~~~G~~~~~~~ 228 (332)
|.+.|...+|++.+|+.+|.. ++|.+||+..-|..+++|+| +.+||+++|++|+.+.|..-+...|..
T Consensus 155 ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~gkE~~RrP~vd~~gra 230 (265)
T KOG0914|consen 155 WSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKGKEVSRRPDVDVKGRA 230 (265)
T ss_pred cChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEccchhhhcCccccccCCc
Confidence 999999999999999999965 99999999999999999988 469999999999999998777665543
No 100
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.07 E-value=1e-09 Score=85.43 Aligned_cols=65 Identities=25% Similarity=0.373 Sum_probs=54.0
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHHcC---CceEEEEECcCC-------------------------hHHHHhCCc
Q psy6451 150 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHL---ETRFIKLNVERA-------------------------PFLTERLRI 201 (332)
Q Consensus 150 ~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~---~v~f~kVd~~~~-------------------------~~l~~~~~I 201 (332)
+++++|.||++||++|+...|.|.++.++|+ ++.|+.|..+.. ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5789999999999999999999999999999 488888888754 237788999
Q ss_pred ccCcEEEEEe-CCe
Q psy6451 202 KVIPTLTLVK-DSV 214 (332)
Q Consensus 202 ~~~PTl~~~~-~G~ 214 (332)
.++|+++++. +|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 9999999985 665
No 101
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.06 E-value=9.6e-10 Score=86.78 Aligned_cols=73 Identities=21% Similarity=0.331 Sum_probs=65.8
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHc--CCceEEEEECcCC-----------------------hHHHHhCCccc
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKH--LETRFIKLNVERA-----------------------PFLTERLRIKV 203 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~--~~v~f~kVd~~~~-----------------------~~l~~~~~I~~ 203 (332)
.++++||.||++||++|+...+.+..+..++ +++.|+.|+++.. ..+++.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 3789999999999999999999999999999 5699999999885 67899999999
Q ss_pred CcEEEEE-eCCeeeeeEec
Q psy6451 204 IPTLTLV-KDSVTKDYIVG 221 (332)
Q Consensus 204 ~PTl~~~-~~G~~v~~~~G 221 (332)
+|+++++ ++|+++.++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 9999999 48999888765
No 102
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.02 E-value=1.2e-09 Score=119.07 Aligned_cols=90 Identities=17% Similarity=0.273 Sum_probs=73.1
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC--ceEEEEEC---------------------------cCChHHHHhC
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNV---------------------------ERAPFLTERL 199 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~---------------------------~~~~~l~~~~ 199 (332)
++++|||+|||+||++|+...|.|++++++|.+ +.++.|.. +....+...|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 578999999999999999999999999999976 66776632 1234577899
Q ss_pred CcccCcEEEEE-eCCeeeeeEecccCcchhhHhHHHHHHH
Q psy6451 200 RIKVIPTLTLV-KDSVTKDYIVGFTELGNCADFSTEMLEW 238 (332)
Q Consensus 200 ~I~~~PTl~~~-~~G~~v~~~~G~~~~~~~~~f~~~~Le~ 238 (332)
+|.++||+++| ++|+++.++.|......+.+++...|..
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~~ 538 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQY 538 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHHh
Confidence 99999999999 7999999999977665565665555553
No 103
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.00 E-value=2.7e-09 Score=92.13 Aligned_cols=80 Identities=21% Similarity=0.265 Sum_probs=67.3
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC--ceEEEEECcC----------------------ChHHHHhCCcccC
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNVER----------------------APFLTERLRIKVI 204 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~~~----------------------~~~l~~~~~I~~~ 204 (332)
.+++++|.||++||++|+...+.+.++++++.+ +.++.|+++. ...+++.|++.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 568899999999999999999999999999875 7888888653 3567889999999
Q ss_pred cEEEEE-eCCeeeeeEecccCcchh
Q psy6451 205 PTLTLV-KDSVTKDYIVGFTELGNC 228 (332)
Q Consensus 205 PTl~~~-~~G~~v~~~~G~~~~~~~ 228 (332)
|+++++ ++|+++..+.|..+...+
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l 164 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQL 164 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHH
Confidence 998888 489999888887654433
No 104
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.00 E-value=5.7e-10 Score=88.15 Aligned_cols=74 Identities=19% Similarity=0.266 Sum_probs=62.6
Q ss_pred ceEecCCchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh-ceeeecccCCCCcccccCCCCccccc
Q psy6451 63 EYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTGQQGHGEYEEI 137 (332)
Q Consensus 63 ~~~ev~~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~kvd~~k~pfl~~k~g~g~~~ei 137 (332)
.+.+++ .++|...+..+.+++|.||+|||++|+.|.+.|.++|..+.+ +.|+++|+.+.+-++.+.+...++++
T Consensus 2 ~~~~l~-~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 76 (101)
T cd03003 2 EIVTLD-RGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSL 76 (101)
T ss_pred CeEEcC-HhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEE
Confidence 356774 679999998888999999999999999999999999999875 68899999988877777666555443
No 105
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.99 E-value=4.4e-10 Score=91.19 Aligned_cols=67 Identities=10% Similarity=0.123 Sum_probs=56.5
Q ss_pred hhhhhhhc--CCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh-ceeeecccCCCCcccccCCCCccccc
Q psy6451 71 KKFFDLCK--KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTGQQGHGEYEEI 137 (332)
Q Consensus 71 ~~f~~~~~--~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~kvd~~k~pfl~~k~g~g~~~ei 137 (332)
.+|.+.+. .+.+|||+|||+||+.|+.|+|.|.++|..+++ +.|+++|+++.+-+....+...++++
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf 72 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTV 72 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEE
Confidence 45667775 466799999999999999999999999999998 58999999999888877776655544
No 106
>PTZ00051 thioredoxin; Provisional
Probab=98.98 E-value=5.4e-10 Score=87.49 Aligned_cols=72 Identities=14% Similarity=0.251 Sum_probs=62.1
Q ss_pred eEecCCchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCccc
Q psy6451 64 YEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYE 135 (332)
Q Consensus 64 ~~ev~~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ 135 (332)
+.+++++++|.++++.+..++++||++||++|+.+.+.|..++..++++.|+.+|+++.+-++.+.+...++
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 73 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMP 73 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceee
Confidence 578888999999999999999999999999999999999999999999999999988766555555544433
No 107
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.98 E-value=2.4e-09 Score=87.20 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=61.8
Q ss_pred ccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEEC---------------------cCChHHHHhCCcccCcE
Q psy6451 148 KKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNV---------------------ERAPFLTERLRIKVIPT 206 (332)
Q Consensus 148 ~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~---------------------~~~~~l~~~~~I~~~PT 206 (332)
.+++++||.||++||++|+.+.|.|..++.++. +..+.++. +....+++.|+|.++||
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 96 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPA 96 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccE
Confidence 356899999999999999999999999987742 22222221 23456899999999999
Q ss_pred EEEEeCCeeeeeEecccCcchh
Q psy6451 207 LTLVKDSVTKDYIVGFTELGNC 228 (332)
Q Consensus 207 l~~~~~G~~v~~~~G~~~~~~~ 228 (332)
++++.+|.++..+.|+.+.+++
T Consensus 97 ~~vid~~gi~~~~~g~~~~~~~ 118 (123)
T cd03011 97 IVIVDPGGIVFVTTGVTSEWGL 118 (123)
T ss_pred EEEEcCCCeEEEEeccCCHHHH
Confidence 9999755588889998776554
No 108
>KOG0907|consensus
Probab=98.94 E-value=9.4e-10 Score=88.33 Aligned_cols=65 Identities=17% Similarity=0.268 Sum_probs=51.5
Q ss_pred hhhhhhcC-CCcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCcccc
Q psy6451 72 KFFDLCKK-SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYEE 136 (332)
Q Consensus 72 ~f~~~~~~-~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~e 136 (332)
.+.+.... +..+||+||++||+.|+.|.|.|.+||..|+++.|+++|+++.+-++.+.+...+++
T Consensus 12 ~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PT 77 (106)
T KOG0907|consen 12 LVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPT 77 (106)
T ss_pred HHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeE
Confidence 44444444 478999999999999999999999999999999999999998555555555444433
No 109
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.93 E-value=5e-09 Score=84.19 Aligned_cols=69 Identities=12% Similarity=0.185 Sum_probs=50.3
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEEC---cCC-----------------hHHHHhCCcccCcEE
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNV---ERA-----------------PFLTERLRIKVIPTL 207 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~---~~~-----------------~~l~~~~~I~~~PTl 207 (332)
+++++||+||++||++|+.+.|.+++++..+.+ +.++.+.- +.. ..+.+.|++.++|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 478999999999999999999999999888754 66665521 111 234556777777777
Q ss_pred EEEe-CCeeee
Q psy6451 208 TLVK-DSVTKD 217 (332)
Q Consensus 208 ~~~~-~G~~v~ 217 (332)
+++. +|+++.
T Consensus 100 ~vid~~G~v~~ 110 (114)
T cd02967 100 VLLDEAGVIAA 110 (114)
T ss_pred EEECCCCeEEe
Confidence 7774 676554
No 110
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.93 E-value=6e-09 Score=85.75 Aligned_cols=74 Identities=15% Similarity=0.151 Sum_probs=62.2
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC--ceEEEEECc-----C----------------------ChHHHHhC
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNVE-----R----------------------APFLTERL 199 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~~-----~----------------------~~~l~~~~ 199 (332)
+++++||.||++||++|....|.|+++.++|.. +.++.|... . ...++..|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 568999999999999999999999999999974 777777542 1 12366779
Q ss_pred CcccCcEEEEE-eCCeeeeeEecc
Q psy6451 200 RIKVIPTLTLV-KDSVTKDYIVGF 222 (332)
Q Consensus 200 ~I~~~PTl~~~-~~G~~v~~~~G~ 222 (332)
++.++|+.+++ ++|+++..+.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999999999 589999998884
No 111
>KOG0910|consensus
Probab=98.92 E-value=1.4e-09 Score=91.44 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=63.3
Q ss_pred cceEecCCchhhhhhhcC-CCcEEEEEccCCChhhhhhHHHHHHHHHhhhh-ceeeecccCCCCcccccCCCCccccc
Q psy6451 62 GEYEEIPDEKKFFDLCKK-SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTGQQGHGEYEEI 137 (332)
Q Consensus 62 G~~~ev~~e~~f~~~~~~-~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~kvd~~k~pfl~~k~g~g~~~ei 137 (332)
+.+..+ +..+|.+.|.+ +.+|+|.|||+||+.|+.|.|.|++|+..+.+ ++|+++|.++++-++...+...++++
T Consensus 43 ~~~~~~-s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtv 119 (150)
T KOG0910|consen 43 TLFNVQ-SDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTV 119 (150)
T ss_pred cccccc-CHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEE
Confidence 344444 56788888855 57799999999999999999999999999866 79999999999999998887776554
No 112
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.90 E-value=1.5e-09 Score=86.13 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=53.2
Q ss_pred hhhhhh--cCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccC-CCCcccccCCCCccccc
Q psy6451 72 KFFDLC--KKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVE-RAPFLTGQQGHGEYEEI 137 (332)
Q Consensus 72 ~f~~~~--~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~-k~pfl~~k~g~g~~~ei 137 (332)
.|.+++ .+++.+||+||+|||++|+.|.|.|.++|..+.++.|+++|.. +.+.++.+.+...++++
T Consensus 8 ~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~ 76 (100)
T cd02999 8 IALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTI 76 (100)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEE
Confidence 344444 3578899999999999999999999999999999999999987 66666666665555544
No 113
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.90 E-value=1.7e-09 Score=87.42 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=52.7
Q ss_pred hhhhhhhc--CCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh-ceeeecccCCCCcccccCCCC
Q psy6451 71 KKFFDLCK--KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTGQQGHG 132 (332)
Q Consensus 71 ~~f~~~~~--~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~kvd~~k~pfl~~k~g~g 132 (332)
++|.+.+. .++.|||+|+|+||+.|+.|+|.|.+||..++. +.|+++|+++.+-+....+..
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~ 67 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDIS 67 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCce
Confidence 45556665 578899999999999999999999999999998 999999999888777665543
No 114
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.90 E-value=1.2e-08 Score=89.22 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=59.2
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCC-------------hHHHHhCCc--ccCcEEEEE-eCCeee-
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA-------------PFLTERLRI--KVIPTLTLV-KDSVTK- 216 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~-------------~~l~~~~~I--~~~PTl~~~-~~G~~v- 216 (332)
||.||++||++|+...|.|.+++++| ++.++-|+.+.. ..+...|++ .++||.+++ ++|+.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 77799999999999999999999998 477776766532 225668885 699999998 689886
Q ss_pred eeEecccCcchh
Q psy6451 217 DYIVGFTELGNC 228 (332)
Q Consensus 217 ~~~~G~~~~~~~ 228 (332)
..++|..+...+
T Consensus 152 ~~~~G~~~~~~L 163 (181)
T PRK13728 152 PLLQGATDAAGF 163 (181)
T ss_pred EEEECCCCHHHH
Confidence 579998775543
No 115
>PHA02278 thioredoxin-like protein
Probab=98.90 E-value=1.6e-09 Score=86.67 Aligned_cols=54 Identities=13% Similarity=0.257 Sum_probs=47.3
Q ss_pred CchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhh-hceeeecccCCC
Q psy6451 69 DEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERA 122 (332)
Q Consensus 69 ~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~-~~~f~kvd~~k~ 122 (332)
+..+|.+.+.+..++||+||||||+.|+.|.|.|.++|..+. ...|+++|++..
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~ 57 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAE 57 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCcc
Confidence 467888999889999999999999999999999999998843 467899988864
No 116
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.89 E-value=2.5e-09 Score=85.62 Aligned_cols=74 Identities=14% Similarity=0.220 Sum_probs=62.1
Q ss_pred ceEecCCchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhh----h---hceeeecccCCCCcccccCCCCccc
Q psy6451 63 EYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKH----L---ETRFIKLNVERAPFLTGQQGHGEYE 135 (332)
Q Consensus 63 ~~~ev~~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~----~---~~~f~kvd~~k~pfl~~k~g~g~~~ 135 (332)
.|.+++ ..+|.++++.+++++|+||+|||++|+.+.+.|..+|..+ + .+.|+++|+.+.+-++.+.+...++
T Consensus 2 ~v~~l~-~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLT-SGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcC-HhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 467785 5799999988899999999999999999999999999874 2 3789999999888777777766665
Q ss_pred cc
Q psy6451 136 EI 137 (332)
Q Consensus 136 ei 137 (332)
++
T Consensus 81 tl 82 (108)
T cd02996 81 TL 82 (108)
T ss_pred EE
Confidence 54
No 117
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.89 E-value=2.3e-09 Score=83.95 Aligned_cols=72 Identities=19% Similarity=0.314 Sum_probs=62.4
Q ss_pred EecCCchhhhhhhcC-CCcEEEEEccCCChhhhhhHHHHHHHHHhhh-hceeeecccCCCCcccccCCCCccccc
Q psy6451 65 EEIPDEKKFFDLCKK-SPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTGQQGHGEYEEI 137 (332)
Q Consensus 65 ~ev~~e~~f~~~~~~-~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~-~~~f~kvd~~k~pfl~~k~g~g~~~ei 137 (332)
..+ ++++|.+.+.+ +.++||.||+|||++|+.+.+.|.+++..+. .+.|+.+|+.+.+.++.+.+...++++
T Consensus 2 ~~l-t~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~ 75 (103)
T PF00085_consen 2 IVL-TDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTI 75 (103)
T ss_dssp EEE-STTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEE
T ss_pred EEC-CHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEE
Confidence 455 46899999987 8899999999999999999999999999999 799999999988777777776665554
No 118
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.88 E-value=2.3e-09 Score=85.00 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=60.0
Q ss_pred eEecCCchhhhhhhcC-CCcEEEEEccCCChhhhhhHHHHHHHHHhhhh-ceeeecccCCCCcccccCCCCccccc
Q psy6451 64 YEEIPDEKKFFDLCKK-SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTGQQGHGEYEEI 137 (332)
Q Consensus 64 ~~ev~~e~~f~~~~~~-~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~kvd~~k~pfl~~k~g~g~~~ei 137 (332)
+.+++ ..+|.+.+.. ..+++|+||+|||++|+.|.+.+.++|..+.+ +.|+++|+.+.+-++.+.+...++++
T Consensus 3 v~~l~-~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~ 77 (104)
T cd03004 3 VITLT-PEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTI 77 (104)
T ss_pred ceEcC-HHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEE
Confidence 56774 6789988754 46899999999999999999999999999864 78999999988777777776665544
No 119
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.87 E-value=2.8e-09 Score=84.66 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=55.3
Q ss_pred EecCCchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh--ceeeecccCCCCcccccCCCCc
Q psy6451 65 EEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNVERAPFLTGQQGHGE 133 (332)
Q Consensus 65 ~ev~~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~--~~f~kvd~~k~pfl~~k~g~g~ 133 (332)
++|++.++|.++++++.+++|.||+|||++|+.+.+.|..++..+.+ +.|++++++ .+-++...+...
T Consensus 2 ~~i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~ 71 (102)
T cd02948 2 VEINNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKC 71 (102)
T ss_pred eEccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCc
Confidence 35778899999999999999999999999999999999999999863 678888887 444444444333
No 120
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.85 E-value=2.9e-08 Score=80.41 Aligned_cols=84 Identities=6% Similarity=0.144 Sum_probs=65.0
Q ss_pred HHHhccCCcEEEEEecCCChhhHHHHHH-H--HHHHHHcC-CceEEEEECc--CChHHHHhCCcccCcEEEEEe--CCee
Q psy6451 144 FDLCKKSPNMVVHFYKDGSVNCKILDEH-M--KTLCKKHL-ETRFIKLNVE--RAPFLTERLRIKVIPTLTLVK--DSVT 215 (332)
Q Consensus 144 ~~~~~~~~~VvV~Fya~wc~~Ck~l~~~-l--~~La~~~~-~v~f~kVd~~--~~~~l~~~~~I~~~PTl~~~~--~G~~ 215 (332)
...-+++++++|+|+++||++|+.|... | ..+.+... ...++++|++ ....++..|++.++||++++. +|+.
T Consensus 11 ~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~ 90 (114)
T cd02958 11 QEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEV 90 (114)
T ss_pred HHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcE
Confidence 3344668999999999999999999864 3 23333332 3677788876 456789999999999999995 6999
Q ss_pred eeeEecccCcch
Q psy6451 216 KDYIVGFTELGN 227 (332)
Q Consensus 216 v~~~~G~~~~~~ 227 (332)
+.++.|..+...
T Consensus 91 l~~~~G~~~~~~ 102 (114)
T cd02958 91 LKVWSGNITPED 102 (114)
T ss_pred eEEEcCCCCHHH
Confidence 999999876543
No 121
>KOG3170|consensus
Probab=98.85 E-value=2.2e-09 Score=93.44 Aligned_cols=109 Identities=25% Similarity=0.344 Sum_probs=93.4
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHH-HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCCchhhhhhhcCC
Q psy6451 2 ESVLQDTVLNVAKNVEKQIDEEIY-RLENLDLDSIEKLREDHLKKLKAKAKRNQELKALGHGEYEEIPDEKKFFDLCKKS 80 (332)
Q Consensus 2 ~~~~~~~~~~~~~~~e~~~d~~~~-~l~~~d~~~l~~~r~~Rl~el~~~~~~~~~~~~~g~G~~~ev~~e~~f~~~~~~~ 80 (332)
++-++++.++.+.++|++.|.+-+ -|+ .++..|-..|.+.+...+......++|--.+.|||.. ..+
T Consensus 44 ~~~~edk~leeLeelEDded~dDerfLE-----~YR~kRl~E~r~~~~k~kfG~V~~ISg~dyv~EVT~A-------s~g 111 (240)
T KOG3170|consen 44 ENRLEDKDLEELEELEDDEDSDDERFLE-----MYRIKRLAEWRATAEKAKFGEVFPISGPDYVKEVTKA-------SEG 111 (240)
T ss_pred HhhhhcccHHHHHHhhhcccccHHHHHH-----HHHHHHHHHHHHHHHHhcccceeeccchHHHHHHHhc-------cCc
Confidence 346788888889988887754444 344 9999999999999999999998888898899999743 348
Q ss_pred CcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCC
Q psy6451 81 PNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA 122 (332)
Q Consensus 81 ~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~ 122 (332)
.+||||.|..+-+.|+.+..||..||.+||.++|+++-+..|
T Consensus 112 vwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c 153 (240)
T KOG3170|consen 112 VWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC 153 (240)
T ss_pred cEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc
Confidence 899999999999999999999999999999999999876644
No 122
>KOG4277|consensus
Probab=98.85 E-value=1.2e-08 Score=94.13 Aligned_cols=149 Identities=21% Similarity=0.270 Sum_probs=98.7
Q ss_pred hcCCCcEEEEEccCCChhhhhhHHHHHHHHHhh----hhceeeecccCCCCcccccCCCCcccccC--------------
Q psy6451 77 CKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKH----LETRFIKLNVERAPFLTGQQGHGEYEEIP-------------- 138 (332)
Q Consensus 77 ~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~----~~~~f~kvd~~k~pfl~~k~g~g~~~ei~-------------- 138 (332)
++.+.-++|.||||||+|||++.|.+.+..... ..+++.+.|+...|.+....|..+|++|.
T Consensus 40 nkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R 119 (468)
T KOG4277|consen 40 NKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGR 119 (468)
T ss_pred cccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCc
Confidence 345667999999999999999999998877554 44788999999999999988887776654
Q ss_pred ----------------------ChhHHHHHhccCCcEEEEEecCCChhhHHHHHHH-HHHHHHcCCceEEEEECcCChHH
Q psy6451 139 ----------------------DEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHM-KTLCKKHLETRFIKLNVERAPFL 195 (332)
Q Consensus 139 ----------------------~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l-~~La~~~~~v~f~kVd~~~~~~l 195 (332)
+..+|.....++.+..|+|.+...|- ...+ +..+.++.-..|....-+..|
T Consensus 120 ~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~PL----~d~fidAASe~~~~a~FfSaseeVaP-- 193 (468)
T KOG4277|consen 120 EKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGTGEGPL----FDAFIDAASEKFSVARFFSASEEVAP-- 193 (468)
T ss_pred cHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeCCCCcH----HHHHHHHhhhheeeeeeeccccccCC--
Confidence 13344555567788888887655442 2233 333444444677765444443
Q ss_pred HHhCCcccCcEEEEEeCCeeeeeEecccCcchhhHhHHH
Q psy6451 196 TERLRIKVIPTLTLVKDSVTKDYIVGFTELGNCADFSTE 234 (332)
Q Consensus 196 ~~~~~I~~~PTl~~~~~G~~v~~~~G~~~~~~~~~f~~~ 234 (332)
+.-..+-.|.+.+|++..-.-...| +.+.+..|++.
T Consensus 194 -e~~~~kempaV~VFKDetf~i~de~--dd~dLseWinR 229 (468)
T KOG4277|consen 194 -EENDAKEMPAVAVFKDETFEIEDEG--DDEDLSEWINR 229 (468)
T ss_pred -cccchhhccceEEEccceeEEEecC--chhHHHHHHhH
Confidence 2334567899999988643322222 22334455543
No 123
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.85 E-value=2.9e-09 Score=84.84 Aligned_cols=53 Identities=17% Similarity=0.142 Sum_probs=47.0
Q ss_pred chhhhhhhcC--CCcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCC
Q psy6451 70 EKKFFDLCKK--SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA 122 (332)
Q Consensus 70 e~~f~~~~~~--~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~ 122 (332)
.++|.+++.. +++|||+||++||++|+.|.|.|..+|..+..+.|+++|.++.
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~ 57 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEN 57 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCC
Confidence 4677888854 6889999999999999999999999999998899999998764
No 124
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.84 E-value=2.7e-09 Score=89.85 Aligned_cols=67 Identities=10% Similarity=0.130 Sum_probs=57.2
Q ss_pred eEecCCchhhhhhhc--CCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh-ceeeecccCCCCcccccCC
Q psy6451 64 YEEIPDEKKFFDLCK--KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTGQQG 130 (332)
Q Consensus 64 ~~ev~~e~~f~~~~~--~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~kvd~~k~pfl~~k~g 130 (332)
+.+|.+..+|.+.+. ...+|||.|||+||+.|+.|+|.|.++|..+.+ +.|+++|+++.+-++...+
T Consensus 5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~ 74 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYE 74 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcC
Confidence 456778889999885 466799999999999999999999999999988 6779999998776665544
No 125
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.82 E-value=3.1e-08 Score=83.22 Aligned_cols=76 Identities=22% Similarity=0.256 Sum_probs=64.5
Q ss_pred cCCcEEEEEecC-CChhhHHHHHHHHHHHHHcCC--ceEEEEECcCC---------------------hHHHHhCCcc--
Q psy6451 149 KSPNMVVHFYKD-GSVNCKILDEHMKTLCKKHLE--TRFIKLNVERA---------------------PFLTERLRIK-- 202 (332)
Q Consensus 149 ~~~~VvV~Fya~-wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~~~~---------------------~~l~~~~~I~-- 202 (332)
+++++||.||++ |||+|....|.+.+|+++|.. +.++-|..+.. ..+++.|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 578999999999 999999999999999888643 88888876654 2477789988
Q ss_pred -------cCcEEEEE-eCCeeeeeEecccC
Q psy6451 203 -------VIPTLTLV-KDSVTKDYIVGFTE 224 (332)
Q Consensus 203 -------~~PTl~~~-~~G~~v~~~~G~~~ 224 (332)
++|+++++ ++|+++....|..+
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 99997766 69999999999866
No 126
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.78 E-value=9.9e-09 Score=80.59 Aligned_cols=71 Identities=21% Similarity=0.263 Sum_probs=57.7
Q ss_pred eEecCCchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh----ceeeecccCCCCcccccCCCCcccc
Q psy6451 64 YEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE----TRFIKLNVERAPFLTGQQGHGEYEE 136 (332)
Q Consensus 64 ~~ev~~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~----~~f~kvd~~k~pfl~~k~g~g~~~e 136 (332)
+.+++ .++|.+.+.++ .++|.||+|||++|+.+.+.+..+|..+.+ +.|+++|+.+.+.++...+...+++
T Consensus 2 ~~~l~-~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 76 (102)
T cd03005 2 VLELT-EDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPT 76 (102)
T ss_pred eeECC-HHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCE
Confidence 56775 56899999766 599999999999999999999999999854 7899999987776666666554443
No 127
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.78 E-value=2.6e-08 Score=99.89 Aligned_cols=101 Identities=18% Similarity=0.300 Sum_probs=81.5
Q ss_pred ccCCCCcc-cccCChhHHHHHhccCC--cEEEEEecCCChhhHHHHHHHH---HHHHHcCCceEEEEECcCCh----HHH
Q psy6451 127 GQQGHGEY-EEIPDEKKFFDLCKKSP--NMVVHFYKDGSVNCKILDEHMK---TLCKKHLETRFIKLNVERAP----FLT 196 (332)
Q Consensus 127 ~k~g~g~~-~ei~~e~~~~~~~~~~~--~VvV~Fya~wc~~Ck~l~~~l~---~La~~~~~v~f~kVd~~~~~----~l~ 196 (332)
....++.. ..+++..++.+.+.+++ +|+|+|||+||-.||.+.+..- +.+.+.+++++.++|.+++. .+-
T Consensus 448 ~~~~~~~~~q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lL 527 (569)
T COG4232 448 QSVSHGEFWQPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALL 527 (569)
T ss_pred CCCccchhhhccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHH
Confidence 34455665 77888888999988776 9999999999999999998753 45666788999999988763 456
Q ss_pred HhCCcccCcEEEEEe-CCeeeeeEecccCcch
Q psy6451 197 ERLRIKVIPTLTLVK-DSVTKDYIVGFTELGN 227 (332)
Q Consensus 197 ~~~~I~~~PTl~~~~-~G~~v~~~~G~~~~~~ 227 (332)
++|++-++||+++|. +|++...+.|+.+.+.
T Consensus 528 k~~~~~G~P~~~ff~~~g~e~~~l~gf~~a~~ 559 (569)
T COG4232 528 KRLGVFGVPTYLFFGPQGSEPEILTGFLTADA 559 (569)
T ss_pred HHcCCCCCCEEEEECCCCCcCcCCcceecHHH
Confidence 799999999999997 8887777888766544
No 128
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.76 E-value=9.7e-09 Score=87.74 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=59.4
Q ss_pred hcCcceEecCCchhhhhhhcC--CCcEEEEEccCCChhhhhhHHHHHHHHHhhh--hceeeecccCCCCcccccCCC
Q psy6451 59 LGHGEYEEIPDEKKFFDLCKK--SPNMVVHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVERAPFLTGQQGH 131 (332)
Q Consensus 59 ~g~G~~~ev~~e~~f~~~~~~--~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~~k~pfl~~k~g~ 131 (332)
.+++.+.+++ +++|.+.+.. ...+||+||+|||++|+.|.|.|..+|..+. .+.|+++|+++.+-++.+.+.
T Consensus 25 ~~~~~v~~l~-~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V 100 (152)
T cd02962 25 MGPEHIKYFT-PKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRV 100 (152)
T ss_pred CCCCccEEcC-HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCc
Confidence 3567888986 4789998843 4579999999999999999999999999985 489999999988766665543
No 129
>KOG0908|consensus
Probab=98.76 E-value=7.4e-09 Score=93.24 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=63.6
Q ss_pred ceEecCCchhhhhhhcCC--CcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCccc
Q psy6451 63 EYEEIPDEKKFFDLCKKS--PNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYE 135 (332)
Q Consensus 63 ~~~ev~~e~~f~~~~~~~--~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ 135 (332)
.|..|.++.+|..-+..+ +.|+|.||+.||+.|+++.|.++.||.+||+..|+++|++++.-.....|+..++
T Consensus 2 ~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amP 76 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMP 76 (288)
T ss_pred CeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCc
Confidence 367888999999988654 5899999999999999999999999999999999999999987777767765543
No 130
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.75 E-value=3.2e-08 Score=82.13 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=56.7
Q ss_pred hhHHHHHhccCCcEEEEEecCCChhhHHHHHHH---HHHHHHcC-CceEEEEECcCCh-HHHHhCCcccCcEEEEE-eCC
Q psy6451 140 EKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHM---KTLCKKHL-ETRFIKLNVERAP-FLTERLRIKVIPTLTLV-KDS 213 (332)
Q Consensus 140 e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l---~~La~~~~-~v~f~kVd~~~~~-~l~~~~~I~~~PTl~~~-~~G 213 (332)
++.+...-+++++|+|.||++||++|+.|...+ .++++... ....+.++++... .+. ..+ .++||++|+ .+|
T Consensus 13 eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g 90 (130)
T cd02960 13 EEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSL 90 (130)
T ss_pred HHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCC
Confidence 334455557789999999999999999999864 22222221 2444566665321 111 233 689999999 599
Q ss_pred eeeeeEecccC
Q psy6451 214 VTKDYIVGFTE 224 (332)
Q Consensus 214 ~~v~~~~G~~~ 224 (332)
+++.++.|..+
T Consensus 91 ~vi~~i~Gy~~ 101 (130)
T cd02960 91 TVRADITGRYS 101 (130)
T ss_pred CCccccccccc
Confidence 99999998754
No 131
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.75 E-value=1e-08 Score=79.91 Aligned_cols=66 Identities=21% Similarity=0.377 Sum_probs=54.6
Q ss_pred chhhhhhhcCC--CcEEEEEccCCChhhhhhHHHHHHHHHh-hhhceeeecccCCCCcccccCCCCccc
Q psy6451 70 EKKFFDLCKKS--PNMVVHFYKDGSVNCKILDEHMKTLCKK-HLETRFIKLNVERAPFLTGQQGHGEYE 135 (332)
Q Consensus 70 e~~f~~~~~~~--~~vvVhFy~p~~~~Ck~~~~~l~~LA~~-~~~~~f~kvd~~k~pfl~~k~g~g~~~ 135 (332)
+.+|.+++... .+++|+||+|||+.|+.|.+.|.+++.. ++.+.|+++|+.+.+.++...+...++
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P 70 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVP 70 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCcccc
Confidence 45777788766 8899999999999999999999999999 678999999998777666655544433
No 132
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.75 E-value=2.3e-08 Score=78.06 Aligned_cols=72 Identities=25% Similarity=0.423 Sum_probs=65.5
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECc-CChHHHHhCC--cccCcEEEEEeCCeeeeeEec
Q psy6451 150 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVE-RAPFLTERLR--IKVIPTLTLVKDSVTKDYIVG 221 (332)
Q Consensus 150 ~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~-~~~~l~~~~~--I~~~PTl~~~~~G~~v~~~~G 221 (332)
+.+++++||++||++|+.+.|.+..+++.+.. +.|+.+++. ..+.+...|+ +..+|+++++.+|..+....|
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 107 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVG 107 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhh
Confidence 78999999999999999999999999999985 999999997 8889999999 999999999999877666555
No 133
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.75 E-value=1.4e-08 Score=79.93 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=58.1
Q ss_pred ceEecCCchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhh--hceeeecccCCCCcccccCCCCccccc
Q psy6451 63 EYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVERAPFLTGQQGHGEYEEI 137 (332)
Q Consensus 63 ~~~ev~~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~~k~pfl~~k~g~g~~~ei 137 (332)
.|.+|+ +.+|.+++++. ++|.||+|||++|+.+.|.|.++|..+. .+.|+++|+...+-++.+.+...++++
T Consensus 2 ~v~~l~-~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~ 75 (101)
T cd02994 2 NVVELT-DSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTI 75 (101)
T ss_pred ceEEcC-hhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEE
Confidence 367785 67999888543 8899999999999999999999998864 478899999887777766666655554
No 134
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.73 E-value=1.5e-08 Score=80.67 Aligned_cols=70 Identities=19% Similarity=0.272 Sum_probs=54.0
Q ss_pred eEecCCchhhhhhhcC-CCcEEEEEccCCChhhhhhHHHHHHHHHhhhh-ceeeecccCC--CCcccccCCCCcc
Q psy6451 64 YEEIPDEKKFFDLCKK-SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVER--APFLTGQQGHGEY 134 (332)
Q Consensus 64 ~~ev~~e~~f~~~~~~-~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~kvd~~k--~pfl~~k~g~g~~ 134 (332)
+.+++ .++|.+.+.+ +.+++|.||+|||++|+.+.+.|..+|..+.+ +.|+.++++. .+.++...+...+
T Consensus 2 v~~l~-~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~ 75 (109)
T cd03002 2 VYELT-PKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGF 75 (109)
T ss_pred eEEcc-hhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcC
Confidence 56674 5789988865 45599999999999999999999999999865 6788888886 4445544444433
No 135
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.72 E-value=1.3e-08 Score=79.41 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=53.4
Q ss_pred hhhhhhc-C-CCcEEEEEccCCChhhhhhHHHHHHHHHhhhh-ceeeecccCCCCcccccCCCCccccc
Q psy6451 72 KFFDLCK-K-SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTGQQGHGEYEEI 137 (332)
Q Consensus 72 ~f~~~~~-~-~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~kvd~~k~pfl~~k~g~g~~~ei 137 (332)
+|.+.+. . +.++||+||+|||++|+.+.+.|.+++..+.+ +.|+++|+++.+.++.+.+...++++
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~ 70 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTV 70 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEE
Confidence 4666664 3 46899999999999999999999999999865 67899999988877777666555443
No 136
>KOG1731|consensus
Probab=98.68 E-value=2.5e-08 Score=99.14 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=72.5
Q ss_pred ChhHHHHHhccC-CcEEEEEecCCChhhHHHHHHHHHHHHHcCC----ceEEEEECc--CChHHHHhCCcccCcEEEEEe
Q psy6451 139 DEKKFFDLCKKS-PNMVVHFYKDGSVNCKILDEHMKTLCKKHLE----TRFIKLNVE--RAPFLTERLRIKVIPTLTLVK 211 (332)
Q Consensus 139 ~e~~~~~~~~~~-~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~----v~f~kVd~~--~~~~l~~~~~I~~~PTl~~~~ 211 (332)
+...|...+-.+ ..-+|.||++|||+|+..+|.++++|..... ++++.|||- .+..+|.+|+|.++||+..|.
T Consensus 45 d~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~ 124 (606)
T KOG1731|consen 45 DVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFP 124 (606)
T ss_pred ehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecC
Confidence 344566666444 5889999999999999999999999987644 788899974 567899999999999999996
Q ss_pred CCeee----eeEecccCcchhhHhHHHHHHH
Q psy6451 212 DSVTK----DYIVGFTELGNCADFSTEMLEW 238 (332)
Q Consensus 212 ~G~~v----~~~~G~~~~~~~~~f~~~~Le~ 238 (332)
-+-.- ..+.|.....++.+++...|..
T Consensus 125 ~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~ 155 (606)
T KOG1731|consen 125 PDSQNKTDGSDVSGPVIPSEIRDQLIRTLAE 155 (606)
T ss_pred CccccCcCCCcccCCcchhhHHHHHHHHHHH
Confidence 43222 2233333344455555555544
No 137
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.66 E-value=2.2e-08 Score=80.80 Aligned_cols=69 Identities=10% Similarity=0.100 Sum_probs=55.3
Q ss_pred Cchhhhhhh---cCCCcEEEEEccCCChhhhhhHHHHHHHHHhhh--hceeeecccCCCCcccccCCCCccccc
Q psy6451 69 DEKKFFDLC---KKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVERAPFLTGQQGHGEYEEI 137 (332)
Q Consensus 69 ~e~~f~~~~---~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~~k~pfl~~k~g~g~~~ei 137 (332)
+.++|.+.+ .++.+++|+||+|||++|+.+.|.+.+++..+. .+.|+++|+.+.+-++.+.+...++++
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~ 83 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAI 83 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEE
Confidence 345676544 257889999999999999999999999999986 478899999887777776676665544
No 138
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.65 E-value=7.3e-08 Score=73.44 Aligned_cols=69 Identities=16% Similarity=0.235 Sum_probs=51.4
Q ss_pred HHHHHhccCCcEEEEEecCCChhhHHHHHHH---HHHHH-HcCCceEEEEECcCChHHHHhCCcccCcEEEEEe
Q psy6451 142 KFFDLCKKSPNMVVHFYKDGSVNCKILDEHM---KTLCK-KHLETRFIKLNVERAPFLTERLRIKVIPTLTLVK 211 (332)
Q Consensus 142 ~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l---~~La~-~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~ 211 (332)
.+....+++++++|.||++||+.|+.|...+ ..+.+ --.+..+++||.+....... +...++||++++.
T Consensus 9 al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ld 81 (82)
T PF13899_consen 9 ALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHH-HHHCSSSEEEEEE
T ss_pred HHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHH-hCCccCCEEEEeC
Confidence 3455567899999999999999999999877 34444 23458999999987654332 2226799999874
No 139
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.65 E-value=4.5e-08 Score=78.61 Aligned_cols=58 Identities=16% Similarity=0.282 Sum_probs=48.8
Q ss_pred ceEecCCchhhhhhhc---CCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh--ceeeecccCC
Q psy6451 63 EYEEIPDEKKFFDLCK---KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNVER 121 (332)
Q Consensus 63 ~~~ev~~e~~f~~~~~---~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~--~~f~kvd~~k 121 (332)
.|.+++ .++|..++. .+.+++|.||+|||++|+.|.+.|.++|..+.+ +.|+.++++.
T Consensus 2 ~v~~~~-~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~ 64 (109)
T cd02993 2 AVVTLS-RAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG 64 (109)
T ss_pred cceecc-HHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc
Confidence 467775 458888873 467899999999999999999999999998864 7788988875
No 140
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.62 E-value=1.8e-07 Score=83.55 Aligned_cols=41 Identities=10% Similarity=0.019 Sum_probs=37.3
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC--ceEEEEEC
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNV 189 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~ 189 (332)
++++|||.|||+||++|....|.|.++..+|.+ +.++.|++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~ 80 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPT 80 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 578999999999999999999999999999864 88888876
No 141
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.59 E-value=2e-07 Score=81.95 Aligned_cols=81 Identities=9% Similarity=-0.011 Sum_probs=60.6
Q ss_pred ccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceE------EEEECcC-----------------------------C
Q psy6451 148 KKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRF------IKLNVER-----------------------------A 192 (332)
Q Consensus 148 ~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f------~kVd~~~-----------------------------~ 192 (332)
-.++.+||+|||.||++|+.-.|.+..|+.+. +.+ .-||.+. .
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~--~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAAK--FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHcC--CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 35899999999999999999999999997642 222 4444443 1
Q ss_pred hHHHHhCCcccCcEE-EEE-eCCeeeeeEecccCcchhhH
Q psy6451 193 PFLTERLRIKVIPTL-TLV-KDSVTKDYIVGFTELGNCAD 230 (332)
Q Consensus 193 ~~l~~~~~I~~~PTl-~~~-~~G~~v~~~~G~~~~~~~~~ 230 (332)
..++..|++.++|+. +++ ++|+++....|......++.
T Consensus 135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence 235668999999776 555 79999999999766554433
No 142
>PRK09381 trxA thioredoxin; Provisional
Probab=98.59 E-value=8.6e-08 Score=76.59 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=58.2
Q ss_pred ceEecCCchhhhhh-hcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh-ceeeecccCCCCcccccCCCCcccc
Q psy6451 63 EYEEIPDEKKFFDL-CKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTGQQGHGEYEE 136 (332)
Q Consensus 63 ~~~ev~~e~~f~~~-~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~kvd~~k~pfl~~k~g~g~~~e 136 (332)
.+.+++. ++|.+. .+.+.+++|+||+|||+.|+.+.+.|..++..+.+ +.|+.+|+...+-+..+.+...+++
T Consensus 4 ~v~~~~~-~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 78 (109)
T PRK09381 4 KIIHLTD-DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPT 78 (109)
T ss_pred cceeeCh-hhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCE
Confidence 4677754 577764 45578899999999999999999999999999965 6889999988777666666555544
No 143
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.58 E-value=1e-07 Score=74.91 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=49.2
Q ss_pred eEecCCchhhhhhhcCC-CcEEEEEccCCChhhhhhHHHHHHHHHhhhh---ceeeecccCCC
Q psy6451 64 YEEIPDEKKFFDLCKKS-PNMVVHFYKDGSVNCKILDEHMKTLCKKHLE---TRFIKLNVERA 122 (332)
Q Consensus 64 ~~ev~~e~~f~~~~~~~-~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~---~~f~kvd~~k~ 122 (332)
|.+++ .++|.+.+.++ ..++|.||+|||++|+.+.+.+.+++..+.+ +.|+++|+.+.
T Consensus 2 v~~l~-~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~ 63 (104)
T cd02995 2 VKVVV-GKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN 63 (104)
T ss_pred eEEEc-hhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch
Confidence 56675 56898888654 7899999999999999999999999999865 78899998754
No 144
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.58 E-value=8.2e-08 Score=77.96 Aligned_cols=71 Identities=17% Similarity=0.219 Sum_probs=53.4
Q ss_pred ceEecCCchhhhhhhcCC-CcEEEEEccCCChhhhhhHHHHHHHHHhhhh----ceeeecccC--CCCcccccCCCCcc
Q psy6451 63 EYEEIPDEKKFFDLCKKS-PNMVVHFYKDGSVNCKILDEHMKTLCKKHLE----TRFIKLNVE--RAPFLTGQQGHGEY 134 (332)
Q Consensus 63 ~~~ev~~e~~f~~~~~~~-~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~----~~f~kvd~~--k~pfl~~k~g~g~~ 134 (332)
.+.+++ +.+|.+.+.++ .+++|.||+|||++|+.|.+.|.++|..+.+ +.|.++|+. ..+.++...+...+
T Consensus 2 ~v~~l~-~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~ 79 (114)
T cd02992 2 PVIVLD-AASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGY 79 (114)
T ss_pred CeEECC-HHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCC
Confidence 567774 67999998665 5899999999999999999999999998742 677888864 23344444444333
No 145
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.57 E-value=6.7e-08 Score=76.76 Aligned_cols=67 Identities=22% Similarity=0.312 Sum_probs=53.6
Q ss_pred chhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhh----hceeeecccCCCCcccccCCCCccccc
Q psy6451 70 EKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL----ETRFIKLNVERAPFLTGQQGHGEYEEI 137 (332)
Q Consensus 70 e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~----~~~f~kvd~~k~pfl~~k~g~g~~~ei 137 (332)
+++|.++ .+...++|+||+|||++|+.+.+.|.+++..+. .+.+.++++...+.++.+.+...++++
T Consensus 6 ~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~ 76 (104)
T cd03000 6 DDSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTI 76 (104)
T ss_pred hhhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEE
Confidence 4677764 556789999999999999999999999999873 377889998887777776666655544
No 146
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.57 E-value=8.9e-08 Score=75.31 Aligned_cols=73 Identities=12% Similarity=0.235 Sum_probs=59.0
Q ss_pred eEecCCchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhh---hceeeecccCC--CCcccccCCCCccccc
Q psy6451 64 YEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL---ETRFIKLNVER--APFLTGQQGHGEYEEI 137 (332)
Q Consensus 64 ~~ev~~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~---~~~f~kvd~~k--~pfl~~k~g~g~~~ei 137 (332)
+.+++ ..+|.++++++.+++|.||+|||+.|+.+.+.+..++..+. .+.|+++|+.. .+.++.+.|...++++
T Consensus 2 ~~~l~-~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~ 79 (104)
T cd02997 2 VVHLT-DEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTF 79 (104)
T ss_pred eEEec-hHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEE
Confidence 56675 55899999988999999999999999999999999998875 36788899887 6666666665555443
No 147
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.56 E-value=9.6e-08 Score=75.05 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=56.7
Q ss_pred eEecCCchhhhhhhcCC-CcEEEEEccCCChhhhhhHHHHHHHHHhhhh-ceeeecccCCCCcccccCCCCcccc
Q psy6451 64 YEEIPDEKKFFDLCKKS-PNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTGQQGHGEYEE 136 (332)
Q Consensus 64 ~~ev~~e~~f~~~~~~~-~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~kvd~~k~pfl~~k~g~g~~~e 136 (332)
|.+++ ..+|.+.+.++ .+++|.||+|||++|+.+.+.|..+|..+.+ +.|+.+|+++.+.++...+...+++
T Consensus 2 v~~l~-~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~ 75 (103)
T cd03001 2 VVELT-DSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPT 75 (103)
T ss_pred eEEcC-HHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCE
Confidence 56674 57888887554 4599999999999999999999999999864 7889999987776666655544443
No 148
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.56 E-value=3.3e-07 Score=83.81 Aligned_cols=42 Identities=7% Similarity=-0.018 Sum_probs=37.7
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC--ceEEEEECc
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNVE 190 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~~ 190 (332)
++++|||.||++||++|....|.|.+|.++|.+ +.++.|+++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 468999999999999999999999999999964 888888863
No 149
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.56 E-value=3.9e-07 Score=80.61 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=53.4
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECc--------------------CChHHHHhCCcccCcEEE
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVE--------------------RAPFLTERLRIKVIPTLT 208 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~--------------------~~~~l~~~~~I~~~PTl~ 208 (332)
+++++||.||++||++|+.+.|.+.++.+++ ++.++-|..+ ....++..|++..+|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 5789999999999999999999999998764 3444444321 124567889999999877
Q ss_pred EE-eCCeeeee
Q psy6451 209 LV-KDSVTKDY 218 (332)
Q Consensus 209 ~~-~~G~~v~~ 218 (332)
++ ++|++..+
T Consensus 152 lID~~G~I~~~ 162 (189)
T TIGR02661 152 LLDQDGKIRAK 162 (189)
T ss_pred EECCCCeEEEc
Confidence 76 58988764
No 150
>PRK10996 thioredoxin 2; Provisional
Probab=98.54 E-value=1.1e-07 Score=80.01 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=62.2
Q ss_pred cceEecCCchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhh-hceeeecccCCCCcccccCCCCccccc
Q psy6451 62 GEYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTGQQGHGEYEEI 137 (332)
Q Consensus 62 G~~~ev~~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~-~~~f~kvd~~k~pfl~~k~g~g~~~ei 137 (332)
|.+.++ +..+|.+++++++.++|.||++||+.|+.|.+.|..++..+. .+.|+++|.++.+.++.+.+...++++
T Consensus 35 ~~~i~~-~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptl 110 (139)
T PRK10996 35 GEVINA-TGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTI 110 (139)
T ss_pred CCCEEc-CHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEE
Confidence 556666 567999999889999999999999999999999999998876 578999999887777666666555443
No 151
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=9.7e-08 Score=88.57 Aligned_cols=73 Identities=18% Similarity=0.329 Sum_probs=64.4
Q ss_pred eEecCCchhhhhhh---cCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh-ceeeecccCCCCcccccCCCCccccc
Q psy6451 64 YEEIPDEKKFFDLC---KKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTGQQGHGEYEEI 137 (332)
Q Consensus 64 ~~ev~~e~~f~~~~---~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~kvd~~k~pfl~~k~g~g~~~ei 137 (332)
+.+|| +.+|...| ....+|||.|++|||++|+.+.|.|++++..+-+ .+++++|++..|.+....|..+++++
T Consensus 25 I~dvT-~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV 101 (304)
T COG3118 25 IKDVT-EANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTV 101 (304)
T ss_pred ceech-HhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeE
Confidence 88886 67898888 3345899999999999999999999999999987 78999999999999999998776655
No 152
>PLN02412 probable glutathione peroxidase
Probab=98.53 E-value=4.8e-07 Score=78.42 Aligned_cols=80 Identities=15% Similarity=0.024 Sum_probs=60.2
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC--ceEEEEECcC-------Ch-H----HHHh----CC----------
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNVER-------AP-F----LTER----LR---------- 200 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~~~-------~~-~----l~~~----~~---------- 200 (332)
++++|||.||++||++|+...|.|..+.++|.+ +.++-|+++. .+ . ++++ |+
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 468999999999999999999999999999975 8888887531 11 1 1111 11
Q ss_pred --------------------cccCcEEEEE-eCCeeeeeEecccCcchh
Q psy6451 201 --------------------IKVIPTLTLV-KDSVTKDYIVGFTELGNC 228 (332)
Q Consensus 201 --------------------I~~~PTl~~~-~~G~~v~~~~G~~~~~~~ 228 (332)
+...||.+++ ++|+++.++.|..+...+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l 156 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKI 156 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHH
Confidence 3446887777 799999999988765444
No 153
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.53 E-value=8.8e-08 Score=86.90 Aligned_cols=75 Identities=19% Similarity=0.256 Sum_probs=62.8
Q ss_pred cceEecCCchhhhhhhcC-----CCcEEEEEccCCChhhhhhHHHHHHHHHhhhh-ceeeecccCCCCcccccCCCCccc
Q psy6451 62 GEYEEIPDEKKFFDLCKK-----SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTGQQGHGEYE 135 (332)
Q Consensus 62 G~~~ev~~e~~f~~~~~~-----~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~kvd~~k~pfl~~k~g~g~~~ 135 (332)
..+.+++ +.+|.+.+.. ..+++|.||+|||++|+.+.|.|.++|..+.+ +.|.++|+.+.+.++.+.+...++
T Consensus 30 ~~Vv~Lt-~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 30 NALVLLN-DKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CCcEECC-HHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence 3578885 6799998853 36899999999999999999999999999876 678999999888777777777666
Q ss_pred cc
Q psy6451 136 EI 137 (332)
Q Consensus 136 ei 137 (332)
++
T Consensus 109 Tl 110 (224)
T PTZ00443 109 TL 110 (224)
T ss_pred EE
Confidence 54
No 154
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.53 E-value=4.7e-07 Score=66.19 Aligned_cols=59 Identities=22% Similarity=0.335 Sum_probs=47.4
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChH----HHHhCCcccCcEEEEEeCCeeeeeEecc
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPF----LTERLRIKVIPTLTLVKDSVTKDYIVGF 222 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~----l~~~~~I~~~PTl~~~~~G~~v~~~~G~ 222 (332)
|..||++||++|+.+.+.|+. .++.|..+|++..+. +.+.+++.++||+++. |+. +.|+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~ 64 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGF 64 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeC
Confidence 568999999999999988865 358899999988765 4567999999999875 654 5564
No 155
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.52 E-value=5e-07 Score=62.51 Aligned_cols=60 Identities=23% Similarity=0.389 Sum_probs=52.7
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHH---hCCcccCcEEEEEeCC
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTE---RLRIKVIPTLTLVKDS 213 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~---~~~I~~~PTl~~~~~G 213 (332)
|+.||++||++|..+.+.+..+.....++.+..++++..+.... .+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 57899999999999999999995555669999999998876654 8999999999999887
No 156
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.51 E-value=1.2e-07 Score=77.78 Aligned_cols=78 Identities=17% Similarity=0.148 Sum_probs=62.8
Q ss_pred cCcceEecCCchhhhhhhcCCCcE-EEEEccCCCh--hhh--hhHHHHHHHHHhh--h-hceeeecccCCCCcccccCCC
Q psy6451 60 GHGEYEEIPDEKKFFDLCKKSPNM-VVHFYKDGSV--NCK--ILDEHMKTLCKKH--L-ETRFIKLNVERAPFLTGQQGH 131 (332)
Q Consensus 60 g~G~~~ev~~e~~f~~~~~~~~~v-vVhFy~p~~~--~Ck--~~~~~l~~LA~~~--~-~~~f~kvd~~k~pfl~~k~g~ 131 (332)
|.-.+.++| +++|.+.+.+++.+ ||.|+++||+ ||+ .+.|.+.++|..+ . ++.|+++|+++.+-++.+.|.
T Consensus 7 ~~~~v~~lt-~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I 85 (120)
T cd03065 7 GKDRVIDLN-EKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL 85 (120)
T ss_pred CCcceeeCC-hhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC
Confidence 455788886 68999999888754 5555555554 699 8999999999998 3 589999999999999999998
Q ss_pred CcccccC
Q psy6451 132 GEYEEIP 138 (332)
Q Consensus 132 g~~~ei~ 138 (332)
.+++++.
T Consensus 86 ~~iPTl~ 92 (120)
T cd03065 86 DEEDSIY 92 (120)
T ss_pred ccccEEE
Confidence 8887763
No 157
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.50 E-value=1.1e-07 Score=74.24 Aligned_cols=68 Identities=21% Similarity=0.314 Sum_probs=58.0
Q ss_pred chhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh---ceeeecccCCCCcccccCCCCccccc
Q psy6451 70 EKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE---TRFIKLNVERAPFLTGQQGHGEYEEI 137 (332)
Q Consensus 70 e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~---~~f~kvd~~k~pfl~~k~g~g~~~ei 137 (332)
+++|.+.++++.+++|+||++||+.|+.+.+.|..+|..+.+ +.|+++|+.+.+.++.+.+...++.+
T Consensus 3 ~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~ 73 (102)
T TIGR01126 3 ASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTI 73 (102)
T ss_pred hhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEE
Confidence 568888888888999999999999999999999999999875 88999999988877777666555443
No 158
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.50 E-value=1.6e-07 Score=72.49 Aligned_cols=65 Identities=23% Similarity=0.323 Sum_probs=55.5
Q ss_pred CchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhh---hhceeeecccCCCCcccccCCCCc
Q psy6451 69 DEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKH---LETRFIKLNVERAPFLTGQQGHGE 133 (332)
Q Consensus 69 ~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~---~~~~f~kvd~~k~pfl~~k~g~g~ 133 (332)
++++|.+.+.++.+++|.||++||+.|+.+.+.+..++..+ ..+.|+.+++...+.++...+...
T Consensus 4 ~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~ 71 (101)
T cd02961 4 TDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRG 71 (101)
T ss_pred cHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCC
Confidence 45789999998889999999999999999999999999998 568999999887666666555443
No 159
>KOG0911|consensus
Probab=98.50 E-value=5.7e-08 Score=86.48 Aligned_cols=89 Identities=21% Similarity=0.310 Sum_probs=79.6
Q ss_pred cccCChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEeCCe
Q psy6451 135 EEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSV 214 (332)
Q Consensus 135 ~ei~~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~ 214 (332)
.++.....| ...+.+.++++||++||.+|++|...+..++...+.+.|++++++..+.++..+.+.++|++.++..|+
T Consensus 4 ~~i~~~~~f--~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~ 81 (227)
T KOG0911|consen 4 QFIVFQEQF--LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGE 81 (227)
T ss_pred eeehhHHHH--HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeeeecch
Confidence 445555666 444889999999999999999999999999999988999999999999999999999999999999999
Q ss_pred eeeeEecccCc
Q psy6451 215 TKDYIVGFTEL 225 (332)
Q Consensus 215 ~v~~~~G~~~~ 225 (332)
.+.++.|..+.
T Consensus 82 ~v~~l~~~~~~ 92 (227)
T KOG0911|consen 82 KVDRLSGADPP 92 (227)
T ss_pred hhhhhhccCcH
Confidence 99999887654
No 160
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.49 E-value=1.3e-07 Score=76.38 Aligned_cols=74 Identities=12% Similarity=0.052 Sum_probs=64.5
Q ss_pred ceEecCCchhhhhhhcCCCcEEEEEccCC--ChhhhhhHHHHHHHHHhhhh-ceeeecccCCCCcccccCCCCccccc
Q psy6451 63 EYEEIPDEKKFFDLCKKSPNMVVHFYKDG--SVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTGQQGHGEYEEI 137 (332)
Q Consensus 63 ~~~ev~~e~~f~~~~~~~~~vvVhFy~p~--~~~Ck~~~~~l~~LA~~~~~-~~f~kvd~~k~pfl~~k~g~g~~~ei 137 (332)
.+.++ ++.+|.+.+..+..+||.||++| |+.|..+.|.|.++|..|++ +.|+++|++..+-++.+.+..+++++
T Consensus 11 ~~~~~-~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTl 87 (111)
T cd02965 11 GWPRV-DAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPAL 87 (111)
T ss_pred CCccc-ccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEE
Confidence 35666 57899999988899999999997 99999999999999999988 67999999998888888877666655
No 161
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.48 E-value=2.5e-07 Score=72.61 Aligned_cols=69 Identities=17% Similarity=0.288 Sum_probs=55.6
Q ss_pred eEecCCchhhhhhhcCCC-cEEEEEccCCChhhhhhHHHHHHHHHhhh---hceeeecccCC-CCcccccCCCCc
Q psy6451 64 YEEIPDEKKFFDLCKKSP-NMVVHFYKDGSVNCKILDEHMKTLCKKHL---ETRFIKLNVER-APFLTGQQGHGE 133 (332)
Q Consensus 64 ~~ev~~e~~f~~~~~~~~-~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~---~~~f~kvd~~k-~pfl~~k~g~g~ 133 (332)
+.+++ +.+|.+.+.++. +++|+||++||++|+.+.+.+..++..+. .+.|+++|+.+ .+-++...+...
T Consensus 2 ~~~l~-~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~ 75 (105)
T cd02998 2 VVELT-DSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSG 75 (105)
T ss_pred eEEcc-hhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCC
Confidence 46674 478888887555 89999999999999999999999999975 47889999888 666666555443
No 162
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.47 E-value=1.2e-07 Score=75.17 Aligned_cols=52 Identities=13% Similarity=0.239 Sum_probs=44.2
Q ss_pred chhhhhhhcCCCcEEEEEccCCChhhhhhHHHH---HHHHHhhh-hceeeecccCC
Q psy6451 70 EKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHM---KTLCKKHL-ETRFIKLNVER 121 (332)
Q Consensus 70 e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l---~~LA~~~~-~~~f~kvd~~k 121 (332)
|..|.+++++++++||.||+|||++|+.|.+.+ .+++..+. .+.|+.+|+..
T Consensus 1 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~ 56 (104)
T cd02953 1 EAALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTK 56 (104)
T ss_pred CHHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCC
Confidence 457888888899999999999999999999887 57787776 67888888764
No 163
>smart00594 UAS UAS domain.
Probab=98.46 E-value=1.7e-06 Score=70.99 Aligned_cols=84 Identities=7% Similarity=0.125 Sum_probs=59.9
Q ss_pred HHHHhccCCcEEEEEecCCChhhHHHHHHH---HHHHHHcC-CceEEEEECcC--ChHHHHhCCcccCcEEEEEe-CC--
Q psy6451 143 FFDLCKKSPNMVVHFYKDGSVNCKILDEHM---KTLCKKHL-ETRFIKLNVER--APFLTERLRIKVIPTLTLVK-DS-- 213 (332)
Q Consensus 143 ~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l---~~La~~~~-~v~f~kVd~~~--~~~l~~~~~I~~~PTl~~~~-~G-- 213 (332)
+....+.+++++|+|+++||+.|..+...+ ..+.+... ...+..+|++. ...++..|++.++|+++++. +|
T Consensus 20 ~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~ 99 (122)
T smart00594 20 KQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQ 99 (122)
T ss_pred HHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCc
Confidence 334446679999999999999999998753 22332222 36777788664 45689999999999999984 54
Q ss_pred ---eeeeeEecccCcc
Q psy6451 214 ---VTKDYIVGFTELG 226 (332)
Q Consensus 214 ---~~v~~~~G~~~~~ 226 (332)
..+.++.|..+..
T Consensus 100 ~~~~~~~~~~G~~~~~ 115 (122)
T smart00594 100 RVIEWVGVVEGEISPE 115 (122)
T ss_pred eeEEEeccccCCCCHH
Confidence 3566777765543
No 164
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.45 E-value=2.2e-07 Score=72.21 Aligned_cols=67 Identities=22% Similarity=0.402 Sum_probs=55.0
Q ss_pred chhhhhhhcCC-CcEEEEEccCCChhhhhhHHHHHHHHHhhh-hceeeecccCCCCcccccCCCCcccc
Q psy6451 70 EKKFFDLCKKS-PNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTGQQGHGEYEE 136 (332)
Q Consensus 70 e~~f~~~~~~~-~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~-~~~f~kvd~~k~pfl~~k~g~g~~~e 136 (332)
.+.|.+.+++. ..++|+||+|||+.|+.+.+.|..++..+. .+.|+.+|+.+.+.++.+.+...+++
T Consensus 3 ~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~ 71 (101)
T TIGR01068 3 DANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPT 71 (101)
T ss_pred HHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCE
Confidence 45777777664 489999999999999999999999998887 48999999988777766666555444
No 165
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.44 E-value=2.4e-07 Score=75.87 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=50.0
Q ss_pred cCCchhhhhhhcC--CCcEEEEEcc-------CCChhhhhhHHHHHHHHHhhh-hceeeecccCCCC
Q psy6451 67 IPDEKKFFDLCKK--SPNMVVHFYK-------DGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAP 123 (332)
Q Consensus 67 v~~e~~f~~~~~~--~~~vvVhFy~-------p~~~~Ck~~~~~l~~LA~~~~-~~~f~kvd~~k~p 123 (332)
+.+.++|.+.+.. +.+|+|.||| +||+.|+.|.|.+.+++..++ .++|+++++.+.+
T Consensus 6 ~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~ 72 (119)
T cd02952 6 VRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRP 72 (119)
T ss_pred ccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcc
Confidence 3466788888876 5789999999 999999999999999999998 6899999998654
No 166
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.44 E-value=6.5e-07 Score=66.50 Aligned_cols=59 Identities=14% Similarity=0.132 Sum_probs=46.5
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHh-----CCcccCcEEEEEeCCeeeee
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTER-----LRIKVIPTLTLVKDSVTKDY 218 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~-----~~I~~~PTl~~~~~G~~v~~ 218 (332)
|+.||++||++|+.+.+.|.++. +.|-.+|++..+..... +++.++|++ ++.+|..+..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~-----~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~~ 65 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG-----AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLTN 65 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-----CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEecC
Confidence 67899999999999999887663 45667888887766655 489999997 5788866543
No 167
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.44 E-value=2e-07 Score=75.58 Aligned_cols=65 Identities=15% Similarity=0.246 Sum_probs=51.9
Q ss_pred hhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCccccc
Q psy6451 73 FFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYEEI 137 (332)
Q Consensus 73 f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ei 137 (332)
|.+.+.+...++|.||+|||++|+.|.+.|.+++..++.+.|.++|.++.+-+..+.+...++++
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~ 79 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTT 79 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEE
Confidence 44555556679999999999999999999999999988889999999877766666655544443
No 168
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.42 E-value=2.2e-06 Score=74.19 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=59.1
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcC--CceEEEEECcC-------C----------------------hHHHH
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVER-------A----------------------PFLTE 197 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~--~v~f~kVd~~~-------~----------------------~~l~~ 197 (332)
+++++||.||++||+.|....+.|.+|..+|. ++.|+.|..+. . ..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 67899999999999999999999999999997 48888887653 1 23567
Q ss_pred hCCcccCcEEEEE-eCCeeeee
Q psy6451 198 RLRIKVIPTLTLV-KDSVTKDY 218 (332)
Q Consensus 198 ~~~I~~~PTl~~~-~~G~~v~~ 218 (332)
.|++..+|+++++ ++|+++..
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~ 125 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYR 125 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEe
Confidence 8999999999999 58988755
No 169
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.42 E-value=3.3e-07 Score=91.20 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=51.6
Q ss_pred CcceEecCCchhhhhhhc---CCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh--ceeeecccCCC
Q psy6451 61 HGEYEEIPDEKKFFDLCK---KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNVERA 122 (332)
Q Consensus 61 ~G~~~ev~~e~~f~~~~~---~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~--~~f~kvd~~k~ 122 (332)
...|.+++ ..+|.++++ ...+|||+||+|||++|+.|.|.|.++|..+.+ +.|++++++..
T Consensus 350 ~~~Vv~L~-~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~ 415 (463)
T TIGR00424 350 SNNVVSLS-RPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD 415 (463)
T ss_pred CCCeEECC-HHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC
Confidence 35788885 468999885 677899999999999999999999999999864 67888887754
No 170
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.41 E-value=6.3e-06 Score=84.53 Aligned_cols=140 Identities=11% Similarity=0.173 Sum_probs=97.8
Q ss_pred cEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeeccc------------CCCCccccc--CCC-C--cccccCC-----
Q psy6451 82 NMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNV------------ERAPFLTGQ--QGH-G--EYEEIPD----- 139 (332)
Q Consensus 82 ~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~------------~k~pfl~~k--~g~-g--~~~ei~~----- 139 (332)
..++-|+.+.|..|.-+...|+++|..-+.+.+...+. +..|.+.-- .+. . .+.-+..
T Consensus 368 v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~ 447 (555)
T TIGR03143 368 VTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGHELN 447 (555)
T ss_pred EEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccHhHH
Confidence 35556667788899999999999998877766654442 334544432 210 0 0111111
Q ss_pred ----------------hhHHHHHhcc-CCcEEE-EEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCc
Q psy6451 140 ----------------EKKFFDLCKK-SPNMVV-HFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRI 201 (332)
Q Consensus 140 ----------------e~~~~~~~~~-~~~VvV-~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I 201 (332)
+++..+.+.+ .+++-+ -|++|+|+.|..+...++.++...|++..--+++...|+++++|+|
T Consensus 448 s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v 527 (555)
T TIGR03143 448 SFILALYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGI 527 (555)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCc
Confidence 2223333332 356645 5589999999999999999999999999999999999999999999
Q ss_pred ccCcEEEEEeCCeeeeeEecccCc
Q psy6451 202 KVIPTLTLVKDSVTKDYIVGFTEL 225 (332)
Q Consensus 202 ~~~PTl~~~~~G~~v~~~~G~~~~ 225 (332)
.++|++++ ||+.+ +.|..+.
T Consensus 528 ~~vP~~~i--~~~~~--~~G~~~~ 547 (555)
T TIGR03143 528 MSVPAIVV--DDQQV--YFGKKTI 547 (555)
T ss_pred eecCEEEE--CCEEE--EeeCCCH
Confidence 99999876 67655 3364443
No 171
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.39 E-value=2.6e-07 Score=75.30 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=51.5
Q ss_pred eEecCCchhhhhhhcCCCcEEEEEcc--CCCh---hhhhhHHHHHHHHHhhhhceeeecccC-----CCCcccccCCCC-
Q psy6451 64 YEEIPDEKKFFDLCKKSPNMVVHFYK--DGSV---NCKILDEHMKTLCKKHLETRFIKLNVE-----RAPFLTGQQGHG- 132 (332)
Q Consensus 64 ~~ev~~e~~f~~~~~~~~~vvVhFy~--p~~~---~Ck~~~~~l~~LA~~~~~~~f~kvd~~-----k~pfl~~k~g~g- 132 (332)
+..+ ++.+|.++|++.+.+||.||+ |||+ ||+.+.+.+...|.. +.+++|++. ...-++.+.|..
T Consensus 3 ~v~L-~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~---v~lakVd~~d~~~~~~~~L~~~y~I~~ 78 (116)
T cd03007 3 CVDL-DTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD---LLVAEVGIKDYGEKLNMELGERYKLDK 78 (116)
T ss_pred eeEC-ChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc---eEEEEEecccccchhhHHHHHHhCCCc
Confidence 4567 468999999999999999999 8898 777777777666653 778999984 234455555554
Q ss_pred -ccccc
Q psy6451 133 -EYEEI 137 (332)
Q Consensus 133 -~~~ei 137 (332)
.|+++
T Consensus 79 ~gyPTl 84 (116)
T cd03007 79 ESYPVI 84 (116)
T ss_pred CCCCEE
Confidence 44443
No 172
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.37 E-value=1e-05 Score=82.26 Aligned_cols=134 Identities=13% Similarity=0.125 Sum_probs=95.9
Q ss_pred CcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeeccc-CCCCccccc-CCC-Cc--ccccCC----------------
Q psy6451 81 PNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNV-ERAPFLTGQ-QGH-GE--YEEIPD---------------- 139 (332)
Q Consensus 81 ~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~-~k~pfl~~k-~g~-g~--~~ei~~---------------- 139 (332)
.+|-+++|.+.|..|..+...|.++|..-+.+.+...+. +..|.+.-. .|. .+ |.-+..
T Consensus 19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~ 98 (517)
T PRK15317 19 RPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLDVRKPSFSITRPGEDTGVRFAGIPMGHEFTSLVLALLQVGG 98 (517)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCCCCCCEEEEEcCCccceEEEEecCccHHHHHHHHHHHHhcC
Confidence 467778888899999999999999999877766543322 233433321 110 00 111111
Q ss_pred -----hhHHHHHhcc-CCcE-EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEeC
Q psy6451 140 -----EKKFFDLCKK-SPNM-VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212 (332)
Q Consensus 140 -----e~~~~~~~~~-~~~V-vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~ 212 (332)
.+...+.+++ .+++ +--|++++||+|..+...+++++..+|.+.+-.||....|+++++|+|.++|++++ |
T Consensus 99 ~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~ 176 (517)
T PRK15317 99 HPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--N 176 (517)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--C
Confidence 2222333332 2444 88999999999999999999999999999999999999999999999999999965 6
Q ss_pred Ceee
Q psy6451 213 SVTK 216 (332)
Q Consensus 213 G~~v 216 (332)
|+.+
T Consensus 177 ~~~~ 180 (517)
T PRK15317 177 GEEF 180 (517)
T ss_pred CcEE
Confidence 6544
No 173
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.36 E-value=1e-06 Score=74.93 Aligned_cols=40 Identities=10% Similarity=0.028 Sum_probs=35.8
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC--ceEEEEEC
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNV 189 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~ 189 (332)
++++|||.||++||+ |....|.|.++.++|.. +.++.|++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~ 62 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPC 62 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 478999999999999 99999999999999964 88888865
No 174
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.33 E-value=5.5e-06 Score=74.84 Aligned_cols=78 Identities=22% Similarity=0.336 Sum_probs=61.9
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECc-----------CChHHHHhCCcccCcEEEEEe-CC-eee
Q psy6451 150 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVE-----------RAPFLTERLRIKVIPTLTLVK-DS-VTK 216 (332)
Q Consensus 150 ~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~-----------~~~~l~~~~~I~~~PTl~~~~-~G-~~v 216 (332)
...-|+.||.+.|+.|+.+.|+|..++.+| ++.+.-|+.+ ..+.++++|+|..+|+++++. ++ +..
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~ 198 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWY 198 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEE
Confidence 678899999999999999999999999999 5555555554 357789999999999999886 34 444
Q ss_pred eeEecccCcchh
Q psy6451 217 DYIVGFTELGNC 228 (332)
Q Consensus 217 ~~~~G~~~~~~~ 228 (332)
.--.|+.+...+
T Consensus 199 pv~~G~~s~~~L 210 (215)
T PF13728_consen 199 PVSQGFMSLDEL 210 (215)
T ss_pred EEeeecCCHHHH
Confidence 445677666543
No 175
>PLN02309 5'-adenylylsulfate reductase
Probab=98.32 E-value=7.6e-07 Score=88.62 Aligned_cols=76 Identities=11% Similarity=0.195 Sum_probs=57.9
Q ss_pred cCcceEecCCchhhhhhh---cCCCcEEEEEccCCChhhhhhHHHHHHHHHhhh--hceeeecccC-CCCcccc-cCCCC
Q psy6451 60 GHGEYEEIPDEKKFFDLC---KKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVE-RAPFLTG-QQGHG 132 (332)
Q Consensus 60 g~G~~~ev~~e~~f~~~~---~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~~-k~pfl~~-k~g~g 132 (332)
..+.|.+++ .++|.+++ +.+..+||.||+|||++|+.|.+.|.++|..+. ++.|+++|++ ...-++. ..+..
T Consensus 343 ~~~~Vv~Lt-~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~ 421 (457)
T PLN02309 343 NSQNVVALS-RAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG 421 (457)
T ss_pred CCCCcEECC-HHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCc
Confidence 346888886 46888877 467889999999999999999999999999985 4889999988 4333332 24444
Q ss_pred cccc
Q psy6451 133 EYEE 136 (332)
Q Consensus 133 ~~~e 136 (332)
.+++
T Consensus 422 ~~PT 425 (457)
T PLN02309 422 SFPT 425 (457)
T ss_pred eeeE
Confidence 4443
No 176
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.31 E-value=7.7e-07 Score=75.14 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=44.4
Q ss_pred CchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh-ceeeecccCC
Q psy6451 69 DEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVER 121 (332)
Q Consensus 69 ~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~kvd~~k 121 (332)
+...|.++..++.++||.||++||++|+.|.+.|.+++..+.+ +.|+.++++.
T Consensus 9 ~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~ 62 (142)
T cd02950 9 SSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDN 62 (142)
T ss_pred ccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCC
Confidence 3456777778889999999999999999999999999999864 5777776653
No 177
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.30 E-value=4.3e-06 Score=69.43 Aligned_cols=80 Identities=15% Similarity=0.187 Sum_probs=64.0
Q ss_pred cCCcEEEEEe-cCCChhhHHHHHHHHHHHHHcC--CceEEEEECcCC---------------------hHHHHhCCcccC
Q psy6451 149 KSPNMVVHFY-KDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVERA---------------------PFLTERLRIKVI 204 (332)
Q Consensus 149 ~~~~VvV~Fy-a~wc~~Ck~l~~~l~~La~~~~--~v~f~kVd~~~~---------------------~~l~~~~~I~~~ 204 (332)
+++++||.|| +.||+.|....+.|.++..++. ++.++.|..+.. ..++..|++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 3789999999 5899999999999999988875 477777765532 246777999988
Q ss_pred ---------cEEEEEe-CCeeeeeEecccCcchh
Q psy6451 205 ---------PTLTLVK-DSVTKDYIVGFTELGNC 228 (332)
Q Consensus 205 ---------PTl~~~~-~G~~v~~~~G~~~~~~~ 228 (332)
|+.+++. +|+++..+.|......+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~ 135 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHA 135 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchH
Confidence 8988885 89999999998755443
No 178
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.29 E-value=3.7e-06 Score=69.22 Aligned_cols=56 Identities=7% Similarity=0.139 Sum_probs=46.7
Q ss_pred eEecCCchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCC
Q psy6451 64 YEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVER 121 (332)
Q Consensus 64 ~~ev~~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k 121 (332)
+.+++ -++|.+.++++..++|.|++|||+.|+.|.|.|.+++.. ....|..+|.+.
T Consensus 8 ~~~it-~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~ 63 (122)
T TIGR01295 8 LEVTT-VVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSEN 63 (122)
T ss_pred ceecC-HHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCC
Confidence 44564 468999999999999999999999999999999999998 445677776653
No 179
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.25 E-value=6.3e-06 Score=66.78 Aligned_cols=69 Identities=19% Similarity=0.300 Sum_probs=57.6
Q ss_pred cCCcEEEEEecC-CChhhHHHHHHHHHHHHHcC--CceEEEEECcCC---------------------hHHHHhCCcc--
Q psy6451 149 KSPNMVVHFYKD-GSVNCKILDEHMKTLCKKHL--ETRFIKLNVERA---------------------PFLTERLRIK-- 202 (332)
Q Consensus 149 ~~~~VvV~Fya~-wc~~Ck~l~~~l~~La~~~~--~v~f~kVd~~~~---------------------~~l~~~~~I~-- 202 (332)
.++++||.||+. ||+.|....+.|.++..+|. ++.++-|..+.. ..++..|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 569999999999 99999999999999999887 588988887643 2467789998
Q ss_pred ----cCcEEEEEe-CCeeee
Q psy6451 203 ----VIPTLTLVK-DSVTKD 217 (332)
Q Consensus 203 ----~~PTl~~~~-~G~~v~ 217 (332)
.+|+++++. +|+++.
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 999988885 676654
No 180
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.24 E-value=1.7e-06 Score=65.30 Aligned_cols=64 Identities=23% Similarity=0.424 Sum_probs=53.4
Q ss_pred hhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCccc
Q psy6451 72 KFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYE 135 (332)
Q Consensus 72 ~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ 135 (332)
+|..++..+.+++|.||++||+.|+.+.+.+..++..+..+.|+.+++...+.++...+...++
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P 65 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIP 65 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCccccc
Confidence 4666777778999999999999999999999999999888999999998766666655554443
No 181
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.21 E-value=5.7e-06 Score=70.37 Aligned_cols=41 Identities=5% Similarity=-0.091 Sum_probs=36.7
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC--ceEEEEEC
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNV 189 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~ 189 (332)
++++|||.||++||++|+...|.|.++.++|.. +.++.|++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 468899999999999999999999999999864 88888875
No 182
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.21 E-value=4.7e-06 Score=62.96 Aligned_cols=60 Identities=22% Similarity=0.244 Sum_probs=46.2
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCCh-----HHHHhCCcccCcEEEEEeCCeee
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP-----FLTERLRIKVIPTLTLVKDSVTK 216 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~-----~l~~~~~I~~~PTl~~~~~G~~v 216 (332)
|+.|+++||++|+.+.+.|.++.-. +...++.|+.+..+ .+.+.+++..+|++ |.+|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 5789999999999999999998722 12678888876554 36777899999997 4577643
No 183
>KOG0913|consensus
Probab=98.17 E-value=5.1e-07 Score=80.85 Aligned_cols=110 Identities=20% Similarity=0.288 Sum_probs=81.7
Q ss_pred hhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC--ceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeee
Q psy6451 140 EKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKD 217 (332)
Q Consensus 140 e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~ 217 (332)
+.++.+.+ .+-.++.|||||||.|+.+.|+++.+|.--.+ +++++||+..+|.|.-+|-+..+|||.-.++|. ..
T Consensus 31 eenw~~~l--~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDGe-Fr 107 (248)
T KOG0913|consen 31 EENWKELL--TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDGE-FR 107 (248)
T ss_pred ccchhhhh--chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeeccc-cc
Confidence 33444443 23467899999999999999999999875544 999999999999999999999999999999994 56
Q ss_pred eEecccCcchhhHhHHHHHHHHHHHcCCccccCCCCCCCch
Q psy6451 218 YIVGFTELGNCADFSTEMLEWRIAQAGVIDYEGDLFNPPDI 258 (332)
Q Consensus 218 ~~~G~~~~~~~~~f~~~~Le~~L~~~g~l~~~~~~~~~P~~ 258 (332)
|+.|.++....-.|.. .+++..|++..+...++..
T Consensus 108 rysgaRdk~dfisf~~------~r~w~~i~p~p~w~~p~S~ 142 (248)
T KOG0913|consen 108 RYSGARDKNDFISFEE------HREWQSIDPVPEWEKPDST 142 (248)
T ss_pred cccCcccchhHHHHHH------hhhhhccCCcchhcCCCch
Confidence 7788777654433322 2345556555555555544
No 184
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.13 E-value=7.3e-05 Score=76.06 Aligned_cols=134 Identities=13% Similarity=0.131 Sum_probs=94.4
Q ss_pred CcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecc--cCCCCccccc-CCC-Cc--ccccCC---------------
Q psy6451 81 PNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLN--VERAPFLTGQ-QGH-GE--YEEIPD--------------- 139 (332)
Q Consensus 81 ~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd--~~k~pfl~~k-~g~-g~--~~ei~~--------------- 139 (332)
.+|.+++|.+.|..|..+...|.++|..-+.+.+...+ .+..|.+.-. .|. .+ +.-+..
T Consensus 19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~~~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~ 98 (515)
T TIGR03140 19 NPVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTADTLRKPSFTILRDGADTGIRFAGIPGGHEFTSLVLAILQVG 98 (515)
T ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCCcCCCCeEEEecCCcccceEEEecCCcHHHHHHHHHHHHhc
Confidence 35666677668999999999999999987766553322 2334444321 110 00 111111
Q ss_pred ------hhHHHHHhcc-CCc-EEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEe
Q psy6451 140 ------EKKFFDLCKK-SPN-MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVK 211 (332)
Q Consensus 140 ------e~~~~~~~~~-~~~-VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~ 211 (332)
.+...+.+.+ .++ -+--|+++.||+|..+...++.++..+|.+.+-.+|....|+++++|++.++|++++
T Consensus 99 ~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i-- 176 (515)
T TIGR03140 99 GHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL-- 176 (515)
T ss_pred CCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--
Confidence 2223333332 234 488899999999999999999999999999999999999999999999999999975
Q ss_pred CCeee
Q psy6451 212 DSVTK 216 (332)
Q Consensus 212 ~G~~v 216 (332)
||+.+
T Consensus 177 ~~~~~ 181 (515)
T TIGR03140 177 NGEEF 181 (515)
T ss_pred CCcEE
Confidence 66544
No 185
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.10 E-value=2.5e-05 Score=65.28 Aligned_cols=76 Identities=5% Similarity=0.030 Sum_probs=61.3
Q ss_pred cCCcEEEEEecCC-ChhhHHHHHHHHHHHHHcCCceEEEEECcCC-----------------------hHHHHhCCccc-
Q psy6451 149 KSPNMVVHFYKDG-SVNCKILDEHMKTLCKKHLETRFIKLNVERA-----------------------PFLTERLRIKV- 203 (332)
Q Consensus 149 ~~~~VvV~Fya~w-c~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~-----------------------~~l~~~~~I~~- 203 (332)
.++++|+.||+.| |++|....|.|.++..++.++.|+.|+.+.. ..++..|++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 104 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIK 104 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeec
Confidence 4689999999998 6999999999999999998888888887521 23556777753
Q ss_pred -----CcEEEEE-eCCeeeeeEecccC
Q psy6451 204 -----IPTLTLV-KDSVTKDYIVGFTE 224 (332)
Q Consensus 204 -----~PTl~~~-~~G~~v~~~~G~~~ 224 (332)
.|+.+++ ++|+++....|...
T Consensus 105 ~~~~~~~~~~iid~~G~I~~~~~~~~~ 131 (143)
T cd03014 105 DLGLLARAVFVIDENGKVIYVELVPEI 131 (143)
T ss_pred cCCccceEEEEEcCCCeEEEEEECCCc
Confidence 6888888 59999999987643
No 186
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.09 E-value=3.7e-06 Score=65.83 Aligned_cols=57 Identities=9% Similarity=0.222 Sum_probs=46.2
Q ss_pred cCCCcEEEEEccCCChhhhhhHHHHHHHHHhhh-hceeeecccCCCCcccccCCCCcc
Q psy6451 78 KKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTGQQGHGEY 134 (332)
Q Consensus 78 ~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~-~~~f~kvd~~k~pfl~~k~g~g~~ 134 (332)
+.+++++|.||++||+.|+.+.+.+..++..+. .+.|+++|.++.+-++...+...+
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~v 68 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGT 68 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeec
Confidence 456789999999999999999999999999886 478999998876655555554433
No 187
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.08 E-value=2.7e-05 Score=58.45 Aligned_cols=61 Identities=16% Similarity=0.324 Sum_probs=48.7
Q ss_pred EEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeeeeEec
Q psy6451 155 VHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVG 221 (332)
Q Consensus 155 V~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G 221 (332)
|.+++++|+.|..+...+++++..+. +.+--+++...+.+ .+|+|.++||+++ ||+.+ +.|
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~--~~G 63 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVV--FVG 63 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEE--EES
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEE--EEe
Confidence 44578999999999999999999984 77777777666666 9999999999944 88755 556
No 188
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.07 E-value=2e-05 Score=68.21 Aligned_cols=74 Identities=4% Similarity=0.016 Sum_probs=59.1
Q ss_pred cCCcEEEEEecCC-ChhhHHHHHHHHHHHHHcCCceEEEEECcCC-----------------------hHHHHhCCcccC
Q psy6451 149 KSPNMVVHFYKDG-SVNCKILDEHMKTLCKKHLETRFIKLNVERA-----------------------PFLTERLRIKVI 204 (332)
Q Consensus 149 ~~~~VvV~Fya~w-c~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~-----------------------~~l~~~~~I~~~ 204 (332)
+++++||.||+.| |++|....|.|.+++.++.++.++.|..+.. ..++..|++...
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~ 122 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIA 122 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeec
Confidence 4679999999999 9999999999999999987788887776631 146677888777
Q ss_pred c---------EEEEE-eCCeeeeeEecc
Q psy6451 205 P---------TLTLV-KDSVTKDYIVGF 222 (332)
Q Consensus 205 P---------Tl~~~-~~G~~v~~~~G~ 222 (332)
| +.+++ ++|+++...++.
T Consensus 123 ~~~~~g~~~r~tfvId~~G~I~~~~~~~ 150 (167)
T PRK00522 123 EGPLKGLLARAVFVLDENNKVVYSELVP 150 (167)
T ss_pred ccccCCceeeEEEEECCCCeEEEEEECC
Confidence 6 76666 588888887654
No 189
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.07 E-value=1e-05 Score=67.27 Aligned_cols=73 Identities=10% Similarity=0.055 Sum_probs=50.6
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHh---CCcccCcEEEEEe-CCeeeeeEecc
Q psy6451 150 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTER---LRIKVIPTLTLVK-DSVTKDYIVGF 222 (332)
Q Consensus 150 ~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~---~~I~~~PTl~~~~-~G~~v~~~~G~ 222 (332)
...-++.|..+|||-|...-|.|.+++...|.+.+--+..+.++.+... .+.+.+||++++. +|+.+.++...
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wger 117 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWGER 117 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEESS
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcCC
Confidence 4567888999999999999999999999999877766667777666544 4789999999994 68988887654
No 190
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.07 E-value=3.1e-05 Score=64.67 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=33.9
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHHcC--CceEEEEECcCC
Q psy6451 150 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVERA 192 (332)
Q Consensus 150 ~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~--~v~f~kVd~~~~ 192 (332)
...||+.|+++||++|+...|.|.++..++. ++.++.|..+..
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 3444555569999999999999999999884 588888887654
No 191
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.07 E-value=1.8e-05 Score=60.60 Aligned_cols=62 Identities=16% Similarity=0.264 Sum_probs=50.2
Q ss_pred EEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCCh----HHHHhCC--cccCcEEEEEeCCeee
Q psy6451 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP----FLTERLR--IKVIPTLTLVKDSVTK 216 (332)
Q Consensus 153 VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~----~l~~~~~--I~~~PTl~~~~~G~~v 216 (332)
-|+.|+.|||+.|+.+...|++|+.++.++.+..+|++..+ .+...++ +..+|+++ .+|+.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i 69 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI 69 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE
Confidence 37889999999999999999999988878999999988753 4544444 58899975 588664
No 192
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.06 E-value=2.1e-05 Score=69.15 Aligned_cols=41 Identities=10% Similarity=-0.051 Sum_probs=33.8
Q ss_pred cCCcE-EEEEecCCChhhHHHHHHHHHHHHHcCC--ceEEEEEC
Q psy6451 149 KSPNM-VVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNV 189 (332)
Q Consensus 149 ~~~~V-vV~Fya~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~ 189 (332)
++++| |+.+||+||++|+...|.|.++.++|.+ +.++.|++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~ 82 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPC 82 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEec
Confidence 35544 5566999999999999999999999864 88888875
No 193
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.04 E-value=3e-05 Score=65.77 Aligned_cols=79 Identities=10% Similarity=0.171 Sum_probs=60.4
Q ss_pred cCCcEEEEEecC-CChhhHHHHHHHHHHHHHcC--CceEEEEECcCC---------------------hHHHHhCCcccC
Q psy6451 149 KSPNMVVHFYKD-GSVNCKILDEHMKTLCKKHL--ETRFIKLNVERA---------------------PFLTERLRIKVI 204 (332)
Q Consensus 149 ~~~~VvV~Fya~-wc~~Ck~l~~~l~~La~~~~--~v~f~kVd~~~~---------------------~~l~~~~~I~~~ 204 (332)
+++++||.||+. ||+.|....+.|.++.+++. ++.|+.|..+.. ..+++.|++...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 568899999976 68889999999999988874 377887776532 346777888654
Q ss_pred ------------cEEEEE-eCCeeeeeEecccCcch
Q psy6451 205 ------------PTLTLV-KDSVTKDYIVGFTELGN 227 (332)
Q Consensus 205 ------------PTl~~~-~~G~~v~~~~G~~~~~~ 227 (332)
|+.+++ ++|+++..+.|+.....
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~ 144 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNH 144 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcchh
Confidence 666667 59999999999866543
No 194
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.04 E-value=3.7e-05 Score=66.74 Aligned_cols=78 Identities=10% Similarity=0.186 Sum_probs=60.1
Q ss_pred cCCcEEEEEe-cCCChhhHHHHHHHHHHHHHcCC--ceEEEEECcCC----------------------------hHHHH
Q psy6451 149 KSPNMVVHFY-KDGSVNCKILDEHMKTLCKKHLE--TRFIKLNVERA----------------------------PFLTE 197 (332)
Q Consensus 149 ~~~~VvV~Fy-a~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~~~~----------------------------~~l~~ 197 (332)
+++++||.|| +.||++|....+.|.+++.+|.. +.++-|..+.. ..+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 4689999999 89999999999999999988853 66666654421 23566
Q ss_pred hCCcc------cCcEEEEEe-CCeeeeeEecccCcc
Q psy6451 198 RLRIK------VIPTLTLVK-DSVTKDYIVGFTELG 226 (332)
Q Consensus 198 ~~~I~------~~PTl~~~~-~G~~v~~~~G~~~~~ 226 (332)
.|++. .+|+.+++. +|+++..+++..+.+
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~ 143 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVG 143 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCC
Confidence 78886 578888885 999999998765543
No 195
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.98 E-value=6.4e-05 Score=66.31 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=58.8
Q ss_pred cCCcEEEEEe-cCCChhhHHHHHHHHHHHHHcC--CceEEEEECcC-------------------------ChHHHHhCC
Q psy6451 149 KSPNMVVHFY-KDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVER-------------------------APFLTERLR 200 (332)
Q Consensus 149 ~~~~VvV~Fy-a~wc~~Ck~l~~~l~~La~~~~--~v~f~kVd~~~-------------------------~~~l~~~~~ 200 (332)
.++++||.|| +.||+.|....+.|..+..++. ++.++.|..+. ...++..|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 4679999999 9999999999999999988874 46666666442 124677888
Q ss_pred cc------cCcEEEEE-eCCeeeeeEecccC
Q psy6451 201 IK------VIPTLTLV-KDSVTKDYIVGFTE 224 (332)
Q Consensus 201 I~------~~PTl~~~-~~G~~v~~~~G~~~ 224 (332)
+. ..|+.+++ ++|.++....+...
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~ 140 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNG 140 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCC
Confidence 86 46988888 59999988776443
No 196
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.97 E-value=8.5e-05 Score=62.29 Aligned_cols=74 Identities=8% Similarity=0.079 Sum_probs=56.8
Q ss_pred CCcEEEEEe-cCCChhhHHHHHHHHHHHHHcC--CceEEEEECcC---------------------C--hHHHHhCCcc-
Q psy6451 150 SPNMVVHFY-KDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVER---------------------A--PFLTERLRIK- 202 (332)
Q Consensus 150 ~~~VvV~Fy-a~wc~~Ck~l~~~l~~La~~~~--~v~f~kVd~~~---------------------~--~~l~~~~~I~- 202 (332)
.+++||.|| ++||+.|....|.|.+++.++. ++.++.|..+. . ..++..|++.
T Consensus 28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~ 107 (149)
T cd03018 28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFD 107 (149)
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCcc
Confidence 377888887 9999999999999999999885 47777776543 1 3456678877
Q ss_pred ---cCc--EEEEE-eCCeeeeeEeccc
Q psy6451 203 ---VIP--TLTLV-KDSVTKDYIVGFT 223 (332)
Q Consensus 203 ---~~P--Tl~~~-~~G~~v~~~~G~~ 223 (332)
++| +.+++ ++|+++....|..
T Consensus 108 ~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 108 EDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred ccCCCccceEEEECCCCEEEEEEecCC
Confidence 333 66666 5899999998875
No 197
>KOG2501|consensus
Probab=97.97 E-value=1.5e-05 Score=67.85 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=52.1
Q ss_pred ccCCcEEEEEecCCChhhHHHHHHHHHHHH----HcCC--ceEEEEECcCC-----------------------hHHHHh
Q psy6451 148 KKSPNMVVHFYKDGSVNCKILDEHMKTLCK----KHLE--TRFIKLNVERA-----------------------PFLTER 198 (332)
Q Consensus 148 ~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~----~~~~--v~f~kVd~~~~-----------------------~~l~~~ 198 (332)
-.++.|.++|-|-||++|+.+-|+|..+.. .+.. +.|+.-|-+.. ..+..+
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k 110 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK 110 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence 356999999999999999998888766544 4444 45544443321 347889
Q ss_pred CCcccCcEEEEEe-CCeeeee
Q psy6451 199 LRIKVIPTLTLVK-DSVTKDY 218 (332)
Q Consensus 199 ~~I~~~PTl~~~~-~G~~v~~ 218 (332)
|.|.++|++.+.+ +|..+..
T Consensus 111 y~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred cccCcCceeEEecCCCCEehH
Confidence 9999999998875 8866644
No 198
>KOG3414|consensus
Probab=97.96 E-value=7.5e-05 Score=60.81 Aligned_cols=87 Identities=11% Similarity=0.183 Sum_probs=73.5
Q ss_pred cccCChhHHHHHhc--cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcEEEEEe
Q psy6451 135 EEIPDEKKFFDLCK--KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLTLVK 211 (332)
Q Consensus 135 ~ei~~e~~~~~~~~--~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~ 211 (332)
+++.+-.+..+++. ..+.||+-|...|-|.|-.|+..|.+++....+ +.++-+|++..+.+.+-|++...||+++|-
T Consensus 6 p~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFf 85 (142)
T KOG3414|consen 6 PTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFF 85 (142)
T ss_pred cccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEE
Confidence 45666667777764 358899999999999999999999999999888 778889999999999999999999999998
Q ss_pred CCeeeeeEec
Q psy6451 212 DSVTKDYIVG 221 (332)
Q Consensus 212 ~G~~v~~~~G 221 (332)
+++-+.--.|
T Consensus 86 n~kHmkiD~g 95 (142)
T KOG3414|consen 86 NNKHMKIDLG 95 (142)
T ss_pred cCceEEEeeC
Confidence 8776544333
No 199
>PHA02125 thioredoxin-like protein
Probab=97.95 E-value=5.9e-06 Score=61.84 Aligned_cols=51 Identities=14% Similarity=0.284 Sum_probs=39.8
Q ss_pred EEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCcccccC
Q psy6451 83 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYEEIP 138 (332)
Q Consensus 83 vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ei~ 138 (332)
+++.||+|||++|+.+.+.|..++ ..|+++|.+..+-+..+.+...++++.
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE
Confidence 379999999999999999997664 457888887777666666666665553
No 200
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.94 E-value=1.2e-05 Score=65.71 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=38.3
Q ss_pred hhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhh-hhceeeecccC
Q psy6451 71 KKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKH-LETRFIKLNVE 120 (332)
Q Consensus 71 ~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~-~~~~f~kvd~~ 120 (332)
+.+-.+..++++|+|.||++||++|+.|.+.+..++... ....|+.++.+
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd 60 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLE 60 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEec
Confidence 344445566789999999999999999999999987765 33456666555
No 201
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.91 E-value=0.00019 Score=58.76 Aligned_cols=66 Identities=24% Similarity=0.356 Sum_probs=46.1
Q ss_pred ccCCcEEEEEecC-------CChhhHHHHHHHHHHHHHcCC-ceEEEEECcC--------ChHHH-HhCCcccCcEEEEE
Q psy6451 148 KKSPNMVVHFYKD-------GSVNCKILDEHMKTLCKKHLE-TRFIKLNVER--------APFLT-ERLRIKVIPTLTLV 210 (332)
Q Consensus 148 ~~~~~VvV~Fya~-------wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~--------~~~l~-~~~~I~~~PTl~~~ 210 (332)
.++++++|.|+++ |||.|....|.+++.-...+. ..|+.|.+.. +++=. ..+++.++||++-+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~ 96 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRW 96 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEEC
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEE
Confidence 3558899999854 999999999999998877765 8888887743 33322 26999999999999
Q ss_pred eCC
Q psy6451 211 KDS 213 (332)
Q Consensus 211 ~~G 213 (332)
.+|
T Consensus 97 ~~~ 99 (119)
T PF06110_consen 97 ETG 99 (119)
T ss_dssp TSS
T ss_pred CCC
Confidence 877
No 202
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.90 E-value=1.2e-05 Score=65.89 Aligned_cols=52 Identities=10% Similarity=0.199 Sum_probs=39.3
Q ss_pred hhhhhhhcCC-CcEEEEEccCCChhhhhhHHHHH---HHHHhhh-hceeeecccCCC
Q psy6451 71 KKFFDLCKKS-PNMVVHFYKDGSVNCKILDEHMK---TLCKKHL-ETRFIKLNVERA 122 (332)
Q Consensus 71 ~~f~~~~~~~-~~vvVhFy~p~~~~Ck~~~~~l~---~LA~~~~-~~~f~kvd~~k~ 122 (332)
+.+.++.++. ++++|.||++||++|+.|++.+. .++..+. ...++.+++...
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 60 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGD 60 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCC
Confidence 3556667778 89999999999999999999885 4554443 356778877643
No 203
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.89 E-value=1.1e-05 Score=58.45 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=44.5
Q ss_pred EEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCccccc
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYEEI 137 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ei 137 (332)
|+-||++||++|+.+.+.|.+++..++.+.|..+|....+-+....|...++++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti 56 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAI 56 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEE
Confidence 678999999999999999999999988899999998877666666665444443
No 204
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.87 E-value=3.4e-05 Score=61.81 Aligned_cols=91 Identities=14% Similarity=0.132 Sum_probs=70.6
Q ss_pred cccCChhHHHHHhccCCcEEEEEecCC--ChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcEEEEEe
Q psy6451 135 EEIPDEKKFFDLCKKSPNMVVHFYKDG--SVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLTLVK 211 (332)
Q Consensus 135 ~ei~~e~~~~~~~~~~~~VvV~Fya~w--c~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~ 211 (332)
+.++ +.++.+.+......|+.|..+. ++.|..+.=++-+|.+.+++ +..+-+.......|..+|++..+|++++++
T Consensus 12 ~~vd-~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R 90 (107)
T PF07449_consen 12 PRVD-ADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFR 90 (107)
T ss_dssp EEE--CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEE
T ss_pred eeec-hhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEE
Confidence 3443 4467777777777777666543 57777788899999999998 566666666778899999999999999999
Q ss_pred CCeeeeeEecccCcc
Q psy6451 212 DSVTKDYIVGFTELG 226 (332)
Q Consensus 212 ~G~~v~~~~G~~~~~ 226 (332)
+|+.+..+.|+.++.
T Consensus 91 ~g~~lG~i~gi~dW~ 105 (107)
T PF07449_consen 91 DGRYLGAIEGIRDWA 105 (107)
T ss_dssp TTEEEEEEESSSTHH
T ss_pred CCEEEEEecCeeccc
Confidence 999999999987653
No 205
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.82 E-value=0.00015 Score=66.96 Aligned_cols=78 Identities=17% Similarity=0.179 Sum_probs=59.4
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCC---------hHHHHhCCcccCcEEEEEe-C-Ceeee
Q psy6451 150 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERA---------PFLTERLRIKVIPTLTLVK-D-SVTKD 217 (332)
Q Consensus 150 ~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~---------~~l~~~~~I~~~PTl~~~~-~-G~~v~ 217 (332)
..+-++.||.+.|+.|..+.|.+..++.+|.= +..+.+|..-. ..++++++|..+|++++.. + ++...
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~p 229 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSP 229 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEE
Confidence 35899999999999999999999999999863 55555554422 4588999999999988875 4 44444
Q ss_pred eEecccCcch
Q psy6451 218 YIVGFTELGN 227 (332)
Q Consensus 218 ~~~G~~~~~~ 227 (332)
--.|+.+...
T Consensus 230 v~~G~iS~de 239 (256)
T TIGR02739 230 LAYGFISQDE 239 (256)
T ss_pred EeeccCCHHH
Confidence 4456666544
No 206
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.79 E-value=0.00013 Score=67.13 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=60.5
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCC---------hHHHHhCCcccCcEEEEEe--CCeeee
Q psy6451 150 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERA---------PFLTERLRIKVIPTLTLVK--DSVTKD 217 (332)
Q Consensus 150 ~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~---------~~l~~~~~I~~~PTl~~~~--~G~~v~ 217 (332)
..+-|++||.+.|+.|..++|++..++.+|.= +..+.+|..-. ...+++++|..+|+++++. .|+...
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEE
Confidence 45899999999999999999999999999864 66677765333 2367899999999999885 345555
Q ss_pred eEecccCcch
Q psy6451 218 YIVGFTELGN 227 (332)
Q Consensus 218 ~~~G~~~~~~ 227 (332)
--.|+.+..+
T Consensus 223 v~~G~iS~de 232 (248)
T PRK13703 223 LSYGFITQDD 232 (248)
T ss_pred EeeccCCHHH
Confidence 5566665544
No 207
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.79 E-value=0.00012 Score=53.08 Aligned_cols=51 Identities=20% Similarity=0.370 Sum_probs=39.7
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhC----CcccCcEEEE
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERL----RIKVIPTLTL 209 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~----~I~~~PTl~~ 209 (332)
++.|+++||++|..+...|.+ .++.|..++++..+...+.| ++..+|++++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-----~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-----RGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-----CCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 578999999999999887765 35777788887766544433 7899999975
No 208
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.78 E-value=0.00024 Score=61.17 Aligned_cols=83 Identities=11% Similarity=0.041 Sum_probs=54.3
Q ss_pred hhHHHHHhccCCcEEEEEecCCChhhHHHHHH-H--HHHHHHcCC-ceEEEEECcCChHHHHhC--------CcccCcEE
Q psy6451 140 EKKFFDLCKKSPNMVVHFYKDGSVNCKILDEH-M--KTLCKKHLE-TRFIKLNVERAPFLTERL--------RIKVIPTL 207 (332)
Q Consensus 140 e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~-l--~~La~~~~~-v~f~kVd~~~~~~l~~~~--------~I~~~PTl 207 (332)
++.|...-+.+++|+|+++.+||.-|+.|... | .++|.-... ..-++||.++-|++...| +..+.|+.
T Consensus 27 ~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~ 106 (163)
T PF03190_consen 27 EEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLT 106 (163)
T ss_dssp HHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEE
T ss_pred HHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCce
Confidence 34566666789999999999999999999863 2 234443322 677899999999998888 88999998
Q ss_pred EEE-eCCeeeeeEecc
Q psy6451 208 TLV-KDSVTKDYIVGF 222 (332)
Q Consensus 208 ~~~-~~G~~v~~~~G~ 222 (332)
++. .+|+++....-+
T Consensus 107 vfltPdg~p~~~~tY~ 122 (163)
T PF03190_consen 107 VFLTPDGKPFFGGTYF 122 (163)
T ss_dssp EEE-TTS-EEEEESS-
T ss_pred EEECCCCCeeeeeeec
Confidence 877 589988764444
No 209
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00023 Score=60.31 Aligned_cols=85 Identities=15% Similarity=0.242 Sum_probs=65.3
Q ss_pred HHHHhccCCcEEEEEecCCChhhHHHHHHHH---HHHHHcCC-ceEEEEECcC----------------ChHHHHhCCcc
Q psy6451 143 FFDLCKKSPNMVVHFYKDGSVNCKILDEHMK---TLCKKHLE-TRFIKLNVER----------------APFLTERLRIK 202 (332)
Q Consensus 143 ~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~---~La~~~~~-v~f~kVd~~~----------------~~~l~~~~~I~ 202 (332)
..++...++..++.|-++.|+.|..+...+. ++..-+.+ +.++.+++.. ..+|++.|+++
T Consensus 35 ~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vr 114 (182)
T COG2143 35 NKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVR 114 (182)
T ss_pred HHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccc
Confidence 3344466799999999999999999987652 33333333 6666666542 24799999999
Q ss_pred cCcEEEEEe-CCeeeeeEecccCcch
Q psy6451 203 VIPTLTLVK-DSVTKDYIVGFTELGN 227 (332)
Q Consensus 203 ~~PTl~~~~-~G~~v~~~~G~~~~~~ 227 (332)
+.||+++|. +|+.+..+.|..+..+
T Consensus 115 stPtfvFfdk~Gk~Il~lPGY~ppe~ 140 (182)
T COG2143 115 STPTFVFFDKTGKTILELPGYMPPEQ 140 (182)
T ss_pred cCceEEEEcCCCCEEEecCCCCCHHH
Confidence 999999995 8999999999987643
No 210
>PRK15000 peroxidase; Provisional
Probab=97.74 E-value=0.00042 Score=61.90 Aligned_cols=79 Identities=11% Similarity=0.198 Sum_probs=62.9
Q ss_pred cCCcEEEEEec-CCChhhHHHHHHHHHHHHHcC--CceEEEEECcCC----------------------------hHHHH
Q psy6451 149 KSPNMVVHFYK-DGSVNCKILDEHMKTLCKKHL--ETRFIKLNVERA----------------------------PFLTE 197 (332)
Q Consensus 149 ~~~~VvV~Fya-~wc~~Ck~l~~~l~~La~~~~--~v~f~kVd~~~~----------------------------~~l~~ 197 (332)
++++||+.||+ .||+.|....+.|..++.++. ++.++.|.++.. ..++.
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 56899999999 599999999999999998885 367777666521 24666
Q ss_pred hCCcc------cCcEEEEEe-CCeeeeeEecccCcch
Q psy6451 198 RLRIK------VIPTLTLVK-DSVTKDYIVGFTELGN 227 (332)
Q Consensus 198 ~~~I~------~~PTl~~~~-~G~~v~~~~G~~~~~~ 227 (332)
.|++. .+|+.+++. +|+++....|..+.+.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr 149 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGR 149 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCC
Confidence 78887 799988885 9999999888766653
No 211
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.73 E-value=0.00019 Score=51.04 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=43.1
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHH----hCCcccCcEEEEEeCCee
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTE----RLRIKVIPTLTLVKDSVT 215 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~----~~~I~~~PTl~~~~~G~~ 215 (332)
|+.|..+||+.|+.+...|+ ..++.|-.+|++..+...+ ..+..++|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~-----~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLD-----EKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHH-----HTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHH-----HcCCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 57899999999999998773 2348888899888764433 349999999986 7764
No 212
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.73 E-value=0.00016 Score=59.80 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=59.6
Q ss_pred cCCcEEEEEe-cCCChhhHHHHHHHHHHHHHc--CCceEEEEECcCC----------------------hHHHHhCCccc
Q psy6451 149 KSPNMVVHFY-KDGSVNCKILDEHMKTLCKKH--LETRFIKLNVERA----------------------PFLTERLRIKV 203 (332)
Q Consensus 149 ~~~~VvV~Fy-a~wc~~Ck~l~~~l~~La~~~--~~v~f~kVd~~~~----------------------~~l~~~~~I~~ 203 (332)
.++++||.|| +.||+.|....|.|.++..++ .++.|+.|..+.. ..++..|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 5789999999 789999999999999999887 3477777776531 24566788877
Q ss_pred Cc---------EEEEE-eCCeeeeeEecccC
Q psy6451 204 IP---------TLTLV-KDSVTKDYIVGFTE 224 (332)
Q Consensus 204 ~P---------Tl~~~-~~G~~v~~~~G~~~ 224 (332)
.| +++++ ++|+++....|...
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 66 66666 47999999988765
No 213
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.72 E-value=0.00013 Score=60.64 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=35.9
Q ss_pred cCCcEEEEEecCCChh-hHHHHHHHHHHHHHcCC-----ceEEEEECc
Q psy6451 149 KSPNMVVHFYKDGSVN-CKILDEHMKTLCKKHLE-----TRFIKLNVE 190 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~-Ck~l~~~l~~La~~~~~-----v~f~kVd~~ 190 (332)
+++++||.||++||++ |....+.|.++..++.. +.++-|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 5789999999999998 99999999999988753 777777754
No 214
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.70 E-value=0.00014 Score=55.88 Aligned_cols=60 Identities=17% Similarity=0.256 Sum_probs=48.0
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCCh----HHHHhCCc--ccCcEEEEEeCCee
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP----FLTERLRI--KVIPTLTLVKDSVT 215 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~----~l~~~~~I--~~~PTl~~~~~G~~ 215 (332)
|+.|..||||.|..+...|.++...++++.+..+|++... .+...++- ..+|+++ .+|+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~ 67 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKH 67 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEE
Confidence 6789999999999999999999888888888888887533 45566663 7999984 47754
No 215
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.70 E-value=0.00015 Score=54.46 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=44.3
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCCh-----HHHHhCCcccCcEEEEEeCCeee
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP-----FLTERLRIKVIPTLTLVKDSVTK 216 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~-----~l~~~~~I~~~PTl~~~~~G~~v 216 (332)
|+.|+++|||.|+.+.+.|.++.. ...++.++..... .+.+..++.++|++ |.+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 578999999999999999988765 3467777766542 35566788999996 5677653
No 216
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.68 E-value=4.1e-05 Score=57.45 Aligned_cols=55 Identities=15% Similarity=0.104 Sum_probs=44.7
Q ss_pred EEEEEccCCChhhhhhHHHHHHHHHhhh-hceeeecccCCCCcccccCCCCccccc
Q psy6451 83 MVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTGQQGHGEYEEI 137 (332)
Q Consensus 83 vvVhFy~p~~~~Ck~~~~~l~~LA~~~~-~~~f~kvd~~k~pfl~~k~g~g~~~ei 137 (332)
.|.-|++|||++|+.+.+.|.+++..+. .+.+.++|.+..+-...+.|...++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~ 57 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAI 57 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEE
Confidence 4678999999999999999999999885 478899999877766666665555554
No 217
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.68 E-value=4.3e-05 Score=69.87 Aligned_cols=118 Identities=14% Similarity=0.210 Sum_probs=67.3
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCcccccCChhHHHHHhccCCcEEEEEe
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYEEIPDEKKFFDLCKKSPNMVVHFY 158 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ei~~e~~~~~~~~~~~~VvV~Fy 158 (332)
+++.+|+.|.-|.|+.|+++.+.+..+...-..+.|+-+-.. |.+. .......
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~---------g~~~----~a~~~a~-------------- 158 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQ---------GLDS----QAEKDMK-------------- 158 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCC---------CCCc----hHHHHHH--------------
Confidence 356789999999999999999999887654333333321110 0000 0000000
Q ss_pred cCCChh--hHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeeeeEecccCcchhhH
Q psy6451 159 KDGSVN--CKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELGNCAD 230 (332)
Q Consensus 159 a~wc~~--Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G~~~~~~~~~ 230 (332)
+=||.. -+.+...+ ...-.....+..+++.+..+++++||+++||++ +.||+.+ .|..+...+..
T Consensus 159 ~iwca~d~~~a~~~~~---~~~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~ 225 (232)
T PRK10877 159 SIWCAADRNKAFDDAM---KGKDVSPASCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKA 225 (232)
T ss_pred HHhcCCCHHHHHHHHH---cCCCCCcccccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHH
Confidence 124532 12222111 111111223455677888999999999999999 7899765 67665544433
No 218
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.67 E-value=0.00056 Score=60.45 Aligned_cols=77 Identities=12% Similarity=0.113 Sum_probs=59.6
Q ss_pred cCCcEEEEEe-cCCChhhHHHHHHHHHHHHHcC--CceEEEEECcC-------------------------ChHHHHhCC
Q psy6451 149 KSPNMVVHFY-KDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVER-------------------------APFLTERLR 200 (332)
Q Consensus 149 ~~~~VvV~Fy-a~wc~~Ck~l~~~l~~La~~~~--~v~f~kVd~~~-------------------------~~~l~~~~~ 200 (332)
.+++||+.|| +.||+.|....+.|..+..++. ++.++.|..+. ...++..|+
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 4679999999 9999999999999999998884 36666665442 235778899
Q ss_pred c----ccC--cEEEEEe-CCeeeeeEecccCc
Q psy6451 201 I----KVI--PTLTLVK-DSVTKDYIVGFTEL 225 (332)
Q Consensus 201 I----~~~--PTl~~~~-~G~~v~~~~G~~~~ 225 (332)
+ .++ |+.+++. +|+++...+.....
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~ 141 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGI 141 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCC
Confidence 8 366 9988884 99998887665333
No 219
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.64 E-value=5.4e-05 Score=59.35 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=45.5
Q ss_pred CCcEEEEEccCCChhhhhhHHHHHHHHHhhhh-ceeeecccCCCCcccccCCCC
Q psy6451 80 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTGQQGHG 132 (332)
Q Consensus 80 ~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~kvd~~k~pfl~~k~g~g 132 (332)
+.++++-||++||+.|+.+.+.+.++|..+.+ +.|+.+|+.+.+-++...|..
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~ 65 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLK 65 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCC
Confidence 56899999999999999999999999999965 899999999876666555543
No 220
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.60 E-value=0.00094 Score=55.09 Aligned_cols=87 Identities=11% Similarity=0.145 Sum_probs=68.7
Q ss_pred cccCChhHHHHHh--ccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcE-EEEE
Q psy6451 135 EEIPDEKKFFDLC--KKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPT-LTLV 210 (332)
Q Consensus 135 ~ei~~e~~~~~~~--~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PT-l~~~ 210 (332)
+.+.+..+..+++ ...+.||+.|..+|-+.|-.|+..|.++|.+... ..++-+|+++.|.+.+.|.+. -|+ +++|
T Consensus 3 ~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF 81 (133)
T PF02966_consen 3 PHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFF 81 (133)
T ss_dssp EEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEE
T ss_pred cccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEE
Confidence 4566667777776 3468899999999999999999999999999888 788999999999999999999 775 6666
Q ss_pred eCCeeeeeEecc
Q psy6451 211 KDSVTKDYIVGF 222 (332)
Q Consensus 211 ~~G~~v~~~~G~ 222 (332)
-+++.+.--.|-
T Consensus 82 ~rnkhm~vD~Gt 93 (133)
T PF02966_consen 82 FRNKHMMVDFGT 93 (133)
T ss_dssp ETTEEEEEESSS
T ss_pred ecCeEEEEEecC
Confidence 677766544443
No 221
>KOG0912|consensus
Probab=97.60 E-value=0.00042 Score=64.67 Aligned_cols=65 Identities=14% Similarity=0.205 Sum_probs=51.6
Q ss_pred hhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhh----hh--ceeeecccCCCCcccccCCCCccc
Q psy6451 71 KKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKH----LE--TRFIKLNVERAPFLTGQQGHGEYE 135 (332)
Q Consensus 71 ~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~----~~--~~f~kvd~~k~pfl~~k~g~g~~~ 135 (332)
.++..++.....|+|.|||.||+..+++.|.+++.|..+ |+ +.|.+||+.+.-.+..+.....|+
T Consensus 4 ~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyP 74 (375)
T KOG0912|consen 4 ENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYP 74 (375)
T ss_pred ccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCc
Confidence 466777888889999999999999999999999999875 53 678999998865555554444333
No 222
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.58 E-value=0.0008 Score=54.84 Aligned_cols=80 Identities=13% Similarity=0.143 Sum_probs=59.7
Q ss_pred hccCCcEEEEEecC----CChhhHHHH--HHHHHHHHHcCCceEEEEECcCC--hHHHHhCCcccCcEEEEEe----CCe
Q psy6451 147 CKKSPNMVVHFYKD----GSVNCKILD--EHMKTLCKKHLETRFIKLNVERA--PFLTERLRIKVIPTLTLVK----DSV 214 (332)
Q Consensus 147 ~~~~~~VvV~Fya~----wc~~Ck~l~--~~l~~La~~~~~v~f~kVd~~~~--~~l~~~~~I~~~PTl~~~~----~G~ 214 (332)
-+..++++|+||+| ||..|+.+- |.+.++-.. ...+...|++.. ..++..+++.++|++.++. +.+
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~ 91 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMT 91 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceE
Confidence 35679999999999 889997653 344444332 377888888754 4588999999999999882 345
Q ss_pred eeeeEecccCcchh
Q psy6451 215 TKDYIVGFTELGNC 228 (332)
Q Consensus 215 ~v~~~~G~~~~~~~ 228 (332)
++.++.|..+...+
T Consensus 92 vv~~i~G~~~~~~l 105 (116)
T cd02991 92 IVGRLEGLIQPEDL 105 (116)
T ss_pred EEEEEeCCCCHHHH
Confidence 68999998776554
No 223
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.51 E-value=0.0014 Score=58.65 Aligned_cols=77 Identities=10% Similarity=0.090 Sum_probs=56.2
Q ss_pred cCCcEEE-EEecCCChhhHHHHHHHHHHHHHcC--CceEEEEECcC---------------------------ChHHHHh
Q psy6451 149 KSPNMVV-HFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVER---------------------------APFLTER 198 (332)
Q Consensus 149 ~~~~VvV-~Fya~wc~~Ck~l~~~l~~La~~~~--~v~f~kVd~~~---------------------------~~~l~~~ 198 (332)
+++++|+ .|+++||+.|....+.|.++..++. ++.++.|.++. ...++..
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 4566655 6899999999999999999888875 36666665542 2346778
Q ss_pred CCcc------cCcEEEEEe-CCeeeeeEecccCc
Q psy6451 199 LRIK------VIPTLTLVK-DSVTKDYIVGFTEL 225 (332)
Q Consensus 199 ~~I~------~~PTl~~~~-~G~~v~~~~G~~~~ 225 (332)
|++. .+|+++++. +|++..........
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~ 139 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAET 139 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCC
Confidence 8884 589999995 89888776544433
No 224
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.50 E-value=0.0011 Score=57.25 Aligned_cols=82 Identities=16% Similarity=0.309 Sum_probs=68.0
Q ss_pred CCCCcccccCChhHHHHHhccCCc-EEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcc--cC
Q psy6451 129 QGHGEYEEIPDEKKFFDLCKKSPN-MVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIK--VI 204 (332)
Q Consensus 129 ~g~g~~~ei~~e~~~~~~~~~~~~-VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~--~~ 204 (332)
.....+.+++.+ .+......+.+ +++.|+.........+...+..+|+++.+ +.|+.+|++..+.++..|++. .+
T Consensus 74 ~~~P~v~~~t~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~ 152 (184)
T PF13848_consen 74 NSFPLVPELTPE-NFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDL 152 (184)
T ss_dssp HSSTSCEEESTT-HHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSS
T ss_pred hccccccccchh-hHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccC
Confidence 334445556544 67777777755 77788877888899999999999999988 999999999999999999998 89
Q ss_pred cEEEEEe
Q psy6451 205 PTLTLVK 211 (332)
Q Consensus 205 PTl~~~~ 211 (332)
|+++++.
T Consensus 153 P~~vi~~ 159 (184)
T PF13848_consen 153 PALVIFD 159 (184)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999998
No 225
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.48 E-value=0.0015 Score=54.34 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=66.0
Q ss_pred cccccCChhHHHHHhccCCcEEEEEecC--CC-hhh-HHHHHHHHHHHHHcCC--ceEEEEECcCChHHHHhCCcc--cC
Q psy6451 133 EYEEIPDEKKFFDLCKKSPNMVVHFYKD--GS-VNC-KILDEHMKTLCKKHLE--TRFIKLNVERAPFLTERLRIK--VI 204 (332)
Q Consensus 133 ~~~ei~~e~~~~~~~~~~~~VvV~Fya~--wc-~~C-k~l~~~l~~La~~~~~--v~f~kVd~~~~~~l~~~~~I~--~~ 204 (332)
.+.++++++.+.+.+.++...||-|.-. .| ..+ ..+...|.++|++|.+ +.|+.+|++..+.+.+.||+. .+
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~ 82 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGY 82 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCC
Confidence 4678899988898998888888888542 12 223 4577889999999976 799999999999999999995 49
Q ss_pred cEEEEEeCCe
Q psy6451 205 PTLTLVKDSV 214 (332)
Q Consensus 205 PTl~~~~~G~ 214 (332)
|+++++...+
T Consensus 83 P~v~i~~~~~ 92 (130)
T cd02983 83 PAMVAINFRK 92 (130)
T ss_pred CEEEEEeccc
Confidence 9999997543
No 226
>PHA03050 glutaredoxin; Provisional
Probab=97.47 E-value=0.0004 Score=55.88 Aligned_cols=83 Identities=13% Similarity=0.248 Sum_probs=54.9
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcC---C----hHHHHhCCcccCcEEEEEeCCeeeeeEecccCcc
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVER---A----PFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELG 226 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~---~----~~l~~~~~I~~~PTl~~~~~G~~v~~~~G~~~~~ 226 (332)
|+.|..||||+|+.....|..+.-.++. |-.+|++. . ..+.+..|...+|++ |-+|+.+ .|+.++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~--~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~~i---GG~ddl- 86 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGA--YEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKTSI---GGYSDL- 86 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCC--cEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCEEE---eChHHH-
Confidence 7789999999999999888777544443 44455544 2 235666788899998 5567644 343332
Q ss_pred hhhHhH-HHHHHHHHHHcCCc
Q psy6451 227 NCADFS-TEMLEWRIAQAGVI 246 (332)
Q Consensus 227 ~~~~f~-~~~Le~~L~~~g~l 246 (332)
..+- ...|...|...|++
T Consensus 87 --~~l~~~g~L~~~l~~~~~~ 105 (108)
T PHA03050 87 --LEIDNMDALGDILSSIGVL 105 (108)
T ss_pred --HHHHHcCCHHHHHHHcccc
Confidence 2222 33678888877776
No 227
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.45 E-value=0.00057 Score=49.13 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=43.1
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHH----HHhCCcccCcEEEEEeCCeeee
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFL----TERLRIKVIPTLTLVKDSVTKD 217 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l----~~~~~I~~~PTl~~~~~G~~v~ 217 (332)
|+.|+++||+.|+.+.+.|.... +.|..+|+...+.+ ....+...+|++ |.+|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 57889999999999998888664 67788888877643 344577788877 45776554
No 228
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.45 E-value=0.00015 Score=59.80 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=40.1
Q ss_pred chhhhhhhcCCCcEEEEEccCCChhhhhhHHHH---HHHHHh-hhhceeeecccCCCC
Q psy6451 70 EKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHM---KTLCKK-HLETRFIKLNVERAP 123 (332)
Q Consensus 70 e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l---~~LA~~-~~~~~f~kvd~~k~p 123 (332)
++.|..+.++.++|+|+||++||+.|+.|++.. .+++.. .....++++|.++.|
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~ 62 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERP 62 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCc
Confidence 456777778899999999999999999998733 133333 235667888887655
No 229
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.44 E-value=0.00014 Score=64.60 Aligned_cols=112 Identities=13% Similarity=0.076 Sum_probs=62.6
Q ss_pred CCcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCcccccCChhHHHHHhccCCcEEEEEec
Q psy6451 80 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYEEIPDEKKFFDLCKKSPNMVVHFYK 159 (332)
Q Consensus 80 ~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ei~~e~~~~~~~~~~~~VvV~Fya 159 (332)
.+..++.|+.|+|++|+.+.+.+.. .-.++.+.-+- .|. .++. ...... -+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~---~p~----~~~~--------~s~~~a-----------~~ 127 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFP---VPI----LGLP--------DSTAKA-----------AA 127 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEE---cCc----CCCc--------cHHHHH-----------HH
Confidence 6789999999999999999998866 11122211110 000 0100 000000 01
Q ss_pred CCChhhHHHHHHHHHHHHHcC---CceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeeeeEecccCcc
Q psy6451 160 DGSVNCKILDEHMKTLCKKHL---ETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELG 226 (332)
Q Consensus 160 ~wc~~Ck~l~~~l~~La~~~~---~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G~~~~~ 226 (332)
=||.. .-...|..+..... ....+..+++.+..+++.++|.++||++ |.+|+. +.|+.+..
T Consensus 128 i~ca~--d~~~a~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~ 191 (197)
T cd03020 128 IWCAK--DRAKAWTDAMSGGKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAA 191 (197)
T ss_pred hhccc--CHHHHHHHHHhCCCCCCCccccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHH
Confidence 24422 11122222222111 2456667777888899999999999997 888976 45665533
No 230
>KOG3425|consensus
Probab=97.42 E-value=0.0012 Score=53.46 Aligned_cols=73 Identities=19% Similarity=0.271 Sum_probs=54.9
Q ss_pred hhHHHHHh---ccCCcEEEEEec--------CCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCCh-------HHHHhCC
Q psy6451 140 EKKFFDLC---KKSPNMVVHFYK--------DGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAP-------FLTERLR 200 (332)
Q Consensus 140 e~~~~~~~---~~~~~VvV~Fya--------~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~-------~l~~~~~ 200 (332)
.++|.+.+ .+++.++|.|++ +|||.|.+..|.+.+.-+..+. +.|+.|++..-| ..-...+
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCC
Confidence 34555544 355669999985 5999999999999998887776 999999986532 1233455
Q ss_pred c-ccCcEEEEEeC
Q psy6451 201 I-KVIPTLTLVKD 212 (332)
Q Consensus 201 I-~~~PTl~~~~~ 212 (332)
+ .++||++=|.+
T Consensus 92 ~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 92 ILTAVPTLLRWKR 104 (128)
T ss_pred ceeecceeeEEcC
Confidence 5 99999998875
No 231
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.38 E-value=0.00023 Score=60.89 Aligned_cols=45 Identities=11% Similarity=0.295 Sum_probs=35.5
Q ss_pred hhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccC
Q psy6451 75 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVE 120 (332)
Q Consensus 75 ~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~ 120 (332)
+.+..+...||+||++||+.|+...|.|.++++.+ +..++.++.+
T Consensus 45 ~~~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d 89 (153)
T TIGR02738 45 RHANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLD 89 (153)
T ss_pred hhhhcCCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeC
Confidence 33444677899999999999999999999999987 4555555444
No 232
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.37 E-value=0.0013 Score=59.46 Aligned_cols=75 Identities=12% Similarity=0.107 Sum_probs=57.3
Q ss_pred CCc-EEEEEecCCChhhHHHHHHHHHHHHHcC--CceEEEEECcCC---------------------------hHHHHhC
Q psy6451 150 SPN-MVVHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVERA---------------------------PFLTERL 199 (332)
Q Consensus 150 ~~~-VvV~Fya~wc~~Ck~l~~~l~~La~~~~--~v~f~kVd~~~~---------------------------~~l~~~~ 199 (332)
+++ ||+.|+++||+.|....+.|.+++.+|. ++.++.|.++.. ..++..|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~y 107 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQL 107 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHc
Confidence 445 5679999999999999999999999884 477777776642 2367778
Q ss_pred Ccc-------cCcEEEEEe-CCeeeeeEecccC
Q psy6451 200 RIK-------VIPTLTLVK-DSVTKDYIVGFTE 224 (332)
Q Consensus 200 ~I~-------~~PTl~~~~-~G~~v~~~~G~~~ 224 (332)
++. .+|+++++. +|++...+.....
T Consensus 108 g~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~ 140 (215)
T PRK13599 108 GMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQE 140 (215)
T ss_pred CCCccCCCCceeeEEEEECCCCEEEEEEEcCCC
Confidence 873 689999995 8998888664433
No 233
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.36 E-value=0.00026 Score=56.50 Aligned_cols=37 Identities=11% Similarity=0.256 Sum_probs=30.9
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh-ceee
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFI 115 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~ 115 (332)
+++++||.||++||+.|+.+.+.|.+++..+.. +.++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi 57 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVV 57 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEE
Confidence 367899999999999999999999999887643 4444
No 234
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.35 E-value=0.0019 Score=51.63 Aligned_cols=86 Identities=9% Similarity=0.118 Sum_probs=65.6
Q ss_pred cccCChhHHHHHhcc--CCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCCh----HHHHhCCcc-cCcE
Q psy6451 135 EEIPDEKKFFDLCKK--SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAP----FLTERLRIK-VIPT 206 (332)
Q Consensus 135 ~ei~~e~~~~~~~~~--~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~~----~l~~~~~I~-~~PT 206 (332)
..|++.+++.+++.. .++++++=.+++||-+...-..|+......++ +.++.+++-... .++++|||. --|-
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 357788889998876 78999999999999999999999999999988 999999987764 578899998 5899
Q ss_pred EEEEeCCeeeeeEe
Q psy6451 207 LTLVKDSVTKDYIV 220 (332)
Q Consensus 207 l~~~~~G~~v~~~~ 220 (332)
++++++|+.+..-.
T Consensus 82 ~ili~~g~~v~~aS 95 (105)
T PF11009_consen 82 VILIKNGKVVWHAS 95 (105)
T ss_dssp EEEEETTEEEEEEE
T ss_pred EEEEECCEEEEECc
Confidence 99999999987654
No 235
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.35 E-value=0.0016 Score=61.83 Aligned_cols=98 Identities=18% Similarity=0.226 Sum_probs=68.2
Q ss_pred ChhHHHHHhccCCcEEEEEecCCChhhHH-----HHHHHHHHHHHc---CCceEEEEECcCChHHHHhCCcccCcEEEEE
Q psy6451 139 DEKKFFDLCKKSPNMVVHFYKDGSVNCKI-----LDEHMKTLCKKH---LETRFIKLNVERAPFLTERLRIKVIPTLTLV 210 (332)
Q Consensus 139 ~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~-----l~~~l~~La~~~---~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~ 210 (332)
++++|..++++....+|+||.|--..-.. |...+-+|+++. .++.|+-||..+...+++++|+...+++.+|
T Consensus 40 neKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E~~SiyVf 119 (383)
T PF01216_consen 40 NEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEEEGSIYVF 119 (383)
T ss_dssp -TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--STTEEEEE
T ss_pred chhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccccCcEEEE
Confidence 57789999999999999999987433222 223234455543 4599999999999999999999999999999
Q ss_pred eCCeeeeeEecccCcchhhHhHHHHHH
Q psy6451 211 KDSVTKDYIVGFTELGNCADFSTEMLE 237 (332)
Q Consensus 211 ~~G~~v~~~~G~~~~~~~~~f~~~~Le 237 (332)
++|+.+... |..+...+..|+-..++
T Consensus 120 kd~~~IEyd-G~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 120 KDGEVIEYD-GERSADTLVEFLLDLLE 145 (383)
T ss_dssp ETTEEEEE--S--SHHHHHHHHHHHHS
T ss_pred ECCcEEEec-CccCHHHHHHHHHHhcc
Confidence 999998765 87776666555555444
No 236
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.31 E-value=0.0026 Score=59.13 Aligned_cols=74 Identities=16% Similarity=0.123 Sum_probs=57.4
Q ss_pred cCCcEEEEEe-cCCChhhHHHHHHHHHHHHHcC--CceEEEEECcC----------------------------ChHHHH
Q psy6451 149 KSPNMVVHFY-KDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVER----------------------------APFLTE 197 (332)
Q Consensus 149 ~~~~VvV~Fy-a~wc~~Ck~l~~~l~~La~~~~--~v~f~kVd~~~----------------------------~~~l~~ 197 (332)
+++++|+.|| +.||+.|....+.|.++..++. ++.++.|.++. ...+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4567888888 8999999999999999988884 36666665543 134778
Q ss_pred hCCcc-----cCcEEEEEe-CCeeeeeEecc
Q psy6451 198 RLRIK-----VIPTLTLVK-DSVTKDYIVGF 222 (332)
Q Consensus 198 ~~~I~-----~~PTl~~~~-~G~~v~~~~G~ 222 (332)
.||+. .+|+.+++. +|+++......
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~ 207 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYD 207 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeC
Confidence 89985 589999995 89998887543
No 237
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.31 E-value=0.0012 Score=49.76 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=44.6
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCC---hHHHHhCCcccCcEEEEEeCCeee
Q psy6451 150 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA---PFLTERLRIKVIPTLTLVKDSVTK 216 (332)
Q Consensus 150 ~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~---~~l~~~~~I~~~PTl~~~~~G~~v 216 (332)
...-|+.|+.+||+.|+.+...|... ++.|-.+|++.. ..+....+...+|.++ .+|+.+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~i 68 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKLI 68 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEEE
Confidence 34557889999999999999888642 577777887765 3345557889999985 477653
No 238
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.31 E-value=0.0011 Score=58.31 Aligned_cols=41 Identities=5% Similarity=-0.012 Sum_probs=34.9
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC--ceEEEEECc
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNVE 190 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~~ 190 (332)
++++|||.|||+||+.|+. -|.|++|.++|.+ +.++.+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 4689999999999999975 7799999999864 888888774
No 239
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.26 E-value=0.00059 Score=53.98 Aligned_cols=80 Identities=18% Similarity=0.264 Sum_probs=51.0
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChH-------HHHhCCcccCcEEEEEeCCeeeeeEecccCcc
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPF-------LTERLRIKVIPTLTLVKDSVTKDYIVGFTELG 226 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~-------l~~~~~I~~~PTl~~~~~G~~v~~~~G~~~~~ 226 (332)
|+.|..||||.|..+...|..+ ++.|..+|++..+. +....+...+|.+ |-+|+.+ .|+.++
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~i---GG~ddl- 78 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLV---GGLENV- 78 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEE---cCHHHH-
Confidence 6778999999999999877654 35555666665543 3334467899997 6677544 343332
Q ss_pred hhhHhH-HHHHHHHHHHcCCc
Q psy6451 227 NCADFS-TEMLEWRIAQAGVI 246 (332)
Q Consensus 227 ~~~~f~-~~~Le~~L~~~g~l 246 (332)
..+. ...|..+|...|++
T Consensus 79 --~~l~~~G~L~~~l~~~~~~ 97 (99)
T TIGR02189 79 --MALHISGSLVPMLKQAGAL 97 (99)
T ss_pred --HHHHHcCCHHHHHHHhCcc
Confidence 2222 22677777666654
No 240
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.24 E-value=0.00031 Score=72.34 Aligned_cols=59 Identities=15% Similarity=0.293 Sum_probs=47.3
Q ss_pred ceEecCCchhhhhhhc----CCCcEEEEEccCCChhhhhhHHHH---HHHHHhhhhceeeecccCC
Q psy6451 63 EYEEIPDEKKFFDLCK----KSPNMVVHFYKDGSVNCKILDEHM---KTLCKKHLETRFIKLNVER 121 (332)
Q Consensus 63 ~~~ev~~e~~f~~~~~----~~~~vvVhFy~p~~~~Ck~~~~~l---~~LA~~~~~~~f~kvd~~k 121 (332)
...++.+.++|.+.++ ++++|+|+||++||++|+.|++.. .+++..+.+..++++|.++
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~ 518 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTA 518 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCC
Confidence 4667777777877764 367899999999999999998875 5677777778889998764
No 241
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.22 E-value=0.0032 Score=56.27 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=55.8
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHHcC--CceEEEEECcCC---------------------------hHHHHhCCcc
Q psy6451 152 NMVVHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVERA---------------------------PFLTERLRIK 202 (332)
Q Consensus 152 ~VvV~Fya~wc~~Ck~l~~~l~~La~~~~--~v~f~kVd~~~~---------------------------~~l~~~~~I~ 202 (332)
.||+.|+++||+.|....+.|.+++.++. ++.++.|.++.. ..++..|++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 45668999999999999999999998885 377877776531 2467788876
Q ss_pred ----cC----cEEEEE-eCCeeeeeEecccCcc
Q psy6451 203 ----VI----PTLTLV-KDSVTKDYIVGFTELG 226 (332)
Q Consensus 203 ----~~----PTl~~~-~~G~~v~~~~G~~~~~ 226 (332)
+. |+.+++ .+|++.....+....+
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~g 140 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTG 140 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCC
Confidence 33 456666 5899988887765443
No 242
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.17 E-value=0.00044 Score=51.85 Aligned_cols=35 Identities=20% Similarity=0.459 Sum_probs=30.9
Q ss_pred EEEEccCCChhhhhhHHHHHHHHHhhhh-ceeeecc
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLN 118 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~kvd 118 (332)
.|.||++||++|+.+.+.+.+++..+.. +.|++++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~ 37 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT 37 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 4789999999999999999999999864 6777776
No 243
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.13 E-value=0.0044 Score=53.28 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=32.1
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEE
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFI 185 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~ 185 (332)
.+++.|+.|+.+.||+|+.+.+.+..+..++++ +.|.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 578899999999999999999999999998875 4443
No 244
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.12 E-value=0.0044 Score=47.96 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=57.2
Q ss_pred cccCChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcC-CceEEEEECcCChHHHHhCCcccCcEEEEEeCC
Q psy6451 135 EEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTERLRIKVIPTLTLVKDS 213 (332)
Q Consensus 135 ~ei~~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~-~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G 213 (332)
.++++.+++...+....++||-|+.++++ .....|.++|..+. .+.|+.+. .+.++..+++. .|++++|+.+
T Consensus 2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~ 74 (97)
T cd02981 2 KELTSKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVLFKPF 74 (97)
T ss_pred eecCCHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEEeCCc
Confidence 35677778888888999999999999988 46778899999886 48887665 45667778775 4999999865
No 245
>PRK13189 peroxiredoxin; Provisional
Probab=97.12 E-value=0.004 Score=56.50 Aligned_cols=77 Identities=10% Similarity=0.156 Sum_probs=56.3
Q ss_pred cCCcE-EEEEecCCChhhHHHHHHHHHHHHHcC--CceEEEEECcC---------------------------ChHHHHh
Q psy6451 149 KSPNM-VVHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVER---------------------------APFLTER 198 (332)
Q Consensus 149 ~~~~V-vV~Fya~wc~~Ck~l~~~l~~La~~~~--~v~f~kVd~~~---------------------------~~~l~~~ 198 (332)
+++++ |+.|+++||+.|....+.|..++.+|. ++.++.|.++. ...++..
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 35555 457789999999999999999988884 46676665542 1246777
Q ss_pred CCcc-------cCcEEEEEe-CCeeeeeEecccCc
Q psy6451 199 LRIK-------VIPTLTLVK-DSVTKDYIVGFTEL 225 (332)
Q Consensus 199 ~~I~-------~~PTl~~~~-~G~~v~~~~G~~~~ 225 (332)
|++. .+|+++++. +|.+.....+....
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~ 148 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEV 148 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCC
Confidence 8875 578888885 89988887765443
No 246
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.06 E-value=0.0057 Score=54.38 Aligned_cols=78 Identities=13% Similarity=0.201 Sum_probs=59.6
Q ss_pred cCCcEEEEEec-CCChhhHHHHHHHHHHHHHcC--CceEEEEECcCC----------------------------hHHHH
Q psy6451 149 KSPNMVVHFYK-DGSVNCKILDEHMKTLCKKHL--ETRFIKLNVERA----------------------------PFLTE 197 (332)
Q Consensus 149 ~~~~VvV~Fya-~wc~~Ck~l~~~l~~La~~~~--~v~f~kVd~~~~----------------------------~~l~~ 197 (332)
.++++||.||+ .||+.|....+.|.+++.+|. ++.++.|+++.. ..++.
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 46789999995 889999998899999998886 477777766522 24677
Q ss_pred hCCcc------cCcEEEEEe-CCeeeeeEecccCcc
Q psy6451 198 RLRIK------VIPTLTLVK-DSVTKDYIVGFTELG 226 (332)
Q Consensus 198 ~~~I~------~~PTl~~~~-~G~~v~~~~G~~~~~ 226 (332)
.|++. .+|+.+++. +|+++...++....+
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~ 150 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVG 150 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCC
Confidence 88885 468888885 899888887765544
No 247
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.06 E-value=0.00094 Score=51.53 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=34.3
Q ss_pred CCcEEEEEccCCChhhhhhHHHHHHHHHhhh---hceeeecccC
Q psy6451 80 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHL---ETRFIKLNVE 120 (332)
Q Consensus 80 ~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~---~~~f~kvd~~ 120 (332)
++++++.|+++||++|+...+.|.++...+. .+.|+.+..+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d 44 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD 44 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC
Confidence 3679999999999999999999999999999 6777776543
No 248
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.03 E-value=0.0062 Score=55.00 Aligned_cols=78 Identities=17% Similarity=0.160 Sum_probs=57.8
Q ss_pred cCCcEE-EEEecCCChhhHHHHHHHHHHHHHcC--CceEEEEECcCC---------------------------hHHHHh
Q psy6451 149 KSPNMV-VHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVERA---------------------------PFLTER 198 (332)
Q Consensus 149 ~~~~Vv-V~Fya~wc~~Ck~l~~~l~~La~~~~--~v~f~kVd~~~~---------------------------~~l~~~ 198 (332)
+++++| +.|+++||+.|....+.|.+++.++. ++.++.|.++.. ..++..
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 345555 48889999999999999999999884 477777766532 245667
Q ss_pred CCcc-------cCcEEEEEe-CCeeeeeEecccCcc
Q psy6451 199 LRIK-------VIPTLTLVK-DSVTKDYIVGFTELG 226 (332)
Q Consensus 199 ~~I~-------~~PTl~~~~-~G~~v~~~~G~~~~~ 226 (332)
||+. .+|+.+++. +|.+.....+..+.+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~g 147 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIG 147 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCC
Confidence 7763 478888884 899988877665544
No 249
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.02 E-value=0.00089 Score=54.63 Aligned_cols=40 Identities=10% Similarity=0.222 Sum_probs=34.0
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeeccc
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNV 119 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~ 119 (332)
+++++||+||++||+.|+.+.+.|.+++..+ ++.++.++.
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~ 63 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINY 63 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEEC
Confidence 4678999999999999999999999999886 366666653
No 250
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.00 E-value=0.0023 Score=47.13 Aligned_cols=61 Identities=18% Similarity=0.407 Sum_probs=44.4
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhC---CcccCcEEEEEeCCeeeeeEeccc
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERL---RIKVIPTLTLVKDSVTKDYIVGFT 223 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~---~I~~~PTl~~~~~G~~v~~~~G~~ 223 (332)
|..|..++|+.|+.+...|++ .++.|-.+|++..+.....+ |...+|++++ +|. ..+.|+.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~-----~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~ 64 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE-----HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFR 64 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccC
Confidence 356788999999999988864 35788888998887665544 8889999754 453 2455553
No 251
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.98 E-value=0.00068 Score=52.54 Aligned_cols=58 Identities=9% Similarity=0.020 Sum_probs=49.0
Q ss_pred CCcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCccccc
Q psy6451 80 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYEEI 137 (332)
Q Consensus 80 ~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ei 137 (332)
.+.-+.-|++|||+.|..+.+.+.+++..++.+.|..+|....+.+..+.|.-.++.+
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~ 69 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAI 69 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEE
Confidence 3446778889999999999999999999999999999999888777777776665554
No 252
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=96.96 E-value=0.0011 Score=54.64 Aligned_cols=32 Identities=9% Similarity=0.173 Sum_probs=29.0
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHHhhh
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL 110 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~ 110 (332)
+++.+||.|+++||+.|+.+.++|.+++..+.
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~ 47 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLK 47 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999988765
No 253
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.94 E-value=0.0056 Score=45.12 Aligned_cols=57 Identities=18% Similarity=0.354 Sum_probs=43.2
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChH----HHHhCCcccCcEEEEEeCCeeee
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPF----LTERLRIKVIPTLTLVKDSVTKD 217 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~----l~~~~~I~~~PTl~~~~~G~~v~ 217 (332)
|+.|+.|||+.|+.+...|++ .++.|..+|+...+. +.+..+-..+|++ |.+|+.+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-----~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-----KGLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 677889999999999988875 357788889888765 4455577888987 55676443
No 254
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.91 E-value=0.0031 Score=47.15 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=40.8
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHH----HhCCcccCcEEEEEeCCeee
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLT----ERLRIKVIPTLTLVKDSVTK 216 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~----~~~~I~~~PTl~~~~~G~~v 216 (332)
|+.|+.|||+.|..+...|++. ++.|-.+|++..+... ...+...+|++ |-+|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 4568899999999999888753 3667777777776543 33477889997 5577543
No 255
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=96.91 E-value=0.0012 Score=50.06 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=26.0
Q ss_pred hhhhhhcCCCcEEEEEccCCChhhhhhHHHH
Q psy6451 72 KFFDLCKKSPNMVVHFYKDGSVNCKILDEHM 102 (332)
Q Consensus 72 ~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l 102 (332)
.+..+-+++++++|.|+++||+.|+.|+..+
T Consensus 9 al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~ 39 (82)
T PF13899_consen 9 ALAEAKKEGKPVLVDFGADWCPPCKKLEREV 39 (82)
T ss_dssp HHHHHHHHTSEEEEEEETTTTHHHHHHHHHT
T ss_pred HHHHHHHcCCCEEEEEECCCCHhHHHHHHHH
Confidence 3444556688999999999999999999877
No 256
>KOG0911|consensus
Probab=96.89 E-value=0.0045 Score=55.55 Aligned_cols=147 Identities=19% Similarity=0.228 Sum_probs=94.9
Q ss_pred ceEecCCchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCCccccc-------------C
Q psy6451 63 EYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQ-------------Q 129 (332)
Q Consensus 63 ~~~ev~~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k-------------~ 129 (332)
.|.+|..-..| ...+....++||+++|+..|+.|+..+..+|..+....|++++++..+-++.. .
T Consensus 2 ~v~~i~~~~~f--~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~ 79 (227)
T KOG0911|consen 2 TVQFIVFQEQF--LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFL 79 (227)
T ss_pred CceeehhHHHH--HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeeeec
Confidence 45666666666 44477889999999999999999999999999998899999988774322211 0
Q ss_pred C------------------------------CCcccccCC-----hhH---HHHHhccCCcEEEEEe----cCCChhhHH
Q psy6451 130 G------------------------------HGEYEEIPD-----EKK---FFDLCKKSPNMVVHFY----KDGSVNCKI 167 (332)
Q Consensus 130 g------------------------------~g~~~ei~~-----e~~---~~~~~~~~~~VvV~Fy----a~wc~~Ck~ 167 (332)
| .+.-+++.. +.. -.+.+-+..+|++..= .|.||.+++
T Consensus 80 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~ 159 (227)
T KOG0911|consen 80 GEKVDRLSGADPPFLVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQ 159 (227)
T ss_pred chhhhhhhccCcHHHHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHhcccCeEEEEecCCCCcccccccHH
Confidence 0 001111110 111 2222233455554432 567888887
Q ss_pred HHHHHHHHHHHcCCceEEEEECcCChHHHHhCC-cccCcEEE-EEeCCeee
Q psy6451 168 LDEHMKTLCKKHLETRFIKLNVERAPFLTERLR-IKVIPTLT-LVKDSVTK 216 (332)
Q Consensus 168 l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~-I~~~PTl~-~~~~G~~v 216 (332)
+-..|... ++.|...|+-....+-+... ....||+= +|-+|+-+
T Consensus 160 ~v~iL~~~-----nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFi 205 (227)
T KOG0911|consen 160 LVGILQSH-----NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFI 205 (227)
T ss_pred HHHHHHHc-----CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEec
Confidence 77666543 46688889888877755544 35688875 88899655
No 257
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.88 E-value=0.0064 Score=44.69 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=41.1
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHH----hCCcc-cCcEEEEEeCCeee
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTE----RLRIK-VIPTLTLVKDSVTK 216 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~----~~~I~-~~PTl~~~~~G~~v 216 (332)
|+.|..+||+.|..+...|+.. ++.|-.++++..+...+ .++.. .+|++ |-+|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEEE
Confidence 5678899999999999887753 57777888887655433 35666 89977 4677543
No 258
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=96.87 E-value=0.0015 Score=53.63 Aligned_cols=32 Identities=9% Similarity=0.173 Sum_probs=28.7
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHHhhh
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL 110 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~ 110 (332)
+++++||.||++||+.|+.+.+.|.++...+.
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~ 48 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLK 48 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHH
Confidence 36789999999999999999999999887764
No 259
>KOG1731|consensus
Probab=96.86 E-value=0.00029 Score=70.67 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=48.0
Q ss_pred cceEecCCchhhhhhhcCCC-cEEEEEccCCChhhhhhHHHHHHHHHhhh----hceeeecccCC
Q psy6451 62 GEYEEIPDEKKFFDLCKKSP-NMVVHFYKDGSVNCKILDEHMKTLCKKHL----ETRFIKLNVER 121 (332)
Q Consensus 62 G~~~ev~~e~~f~~~~~~~~-~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~----~~~f~kvd~~k 121 (332)
-.+.++ +..+|..++-.+. ..+|+||+.||+||.++.|++..+|.... -+++..||+..
T Consensus 39 D~ii~L-d~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~ 102 (606)
T KOG1731|consen 39 DPIIEL-DVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCAD 102 (606)
T ss_pred CCeEEe-ehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccc
Confidence 357777 4678999997766 79999999999999999999999998753 35667777754
No 260
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=96.82 E-value=0.0014 Score=61.33 Aligned_cols=41 Identities=10% Similarity=0.151 Sum_probs=33.5
Q ss_pred CCcEEEEEccCCChhhhhhHHHHHHHHHhhh-hceeeecccC
Q psy6451 80 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVE 120 (332)
Q Consensus 80 ~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~-~~~f~kvd~~ 120 (332)
+.++||.||++||+.|+.+.+.|..++..|. .+.++.+|..
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~ 207 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGG 207 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCC
Confidence 5789999999999999999999999999985 2334455443
No 261
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.76 E-value=0.0034 Score=52.21 Aligned_cols=33 Identities=12% Similarity=0.212 Sum_probs=27.0
Q ss_pred chhhhhhhcCCCcEEEEEccCCChhhhhhHHHH
Q psy6451 70 EKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHM 102 (332)
Q Consensus 70 e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l 102 (332)
++.+..+-++.++++|.||+.||+.|+.|+...
T Consensus 13 eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 13 EEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred HHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 345555557788999999999999999999855
No 262
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=96.76 E-value=0.0017 Score=57.02 Aligned_cols=40 Identities=10% Similarity=0.299 Sum_probs=33.0
Q ss_pred cCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeeccc
Q psy6451 78 KKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNV 119 (332)
Q Consensus 78 ~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~ 119 (332)
.+++++||+||++||+.|+...|.|.+++.. ++.++.++.
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~ 105 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNY 105 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEEC
Confidence 3578899999999999999999999999764 455666653
No 263
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.73 E-value=0.005 Score=46.63 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=42.9
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEEC--cCC------------------------------hHHHHhCC
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNV--ERA------------------------------PFLTERLR 200 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~--~~~------------------------------~~l~~~~~ 200 (332)
|+.|+.+.|++|..+.+.+.++...+++ +.|....+ ... ..++..+|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999755554 55554432 111 23566899
Q ss_pred cccCcEEEEEe
Q psy6451 201 IKVIPTLTLVK 211 (332)
Q Consensus 201 I~~~PTl~~~~ 211 (332)
+.++||+++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999998764
No 264
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.73 E-value=0.0078 Score=45.74 Aligned_cols=60 Identities=18% Similarity=0.386 Sum_probs=43.9
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHH---HhCCcccCcEEEEEeCCeeeeeEeccc
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLT---ERLRIKVIPTLTLVKDSVTKDYIVGFT 223 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~---~~~~I~~~PTl~~~~~G~~v~~~~G~~ 223 (332)
|..|..+||+.|+.+...|.+ .++.|-.+|++..+... ...|...+|++++ +|. .+.|+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~ 65 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFR 65 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCC
Confidence 567888999999999977754 46888899998877643 2357789999964 442 344553
No 265
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.67 E-value=0.0026 Score=53.97 Aligned_cols=31 Identities=13% Similarity=0.289 Sum_probs=27.7
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHHhh
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKH 109 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~ 109 (332)
++++|+|+|+|+||+.|+...|.|..+...+
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~ 54 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRL 54 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999987654
No 266
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.67 E-value=0.0021 Score=49.39 Aligned_cols=41 Identities=15% Similarity=0.292 Sum_probs=36.1
Q ss_pred CCcEEEEEccCCChhhhhhHHHHHHHHHhhhh-ceeeecccC
Q psy6451 80 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVE 120 (332)
Q Consensus 80 ~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~kvd~~ 120 (332)
...++++||++||+.|+.+.+.+..++..+.. ..|+.++..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~ 73 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVD 73 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECC
Confidence 66899999999999999999999999999984 777777664
No 267
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=96.63 E-value=0.0026 Score=49.52 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=36.8
Q ss_pred CCcEEEEEccCCChhhhhhHHHHHHHHHhh--hhceeeecccC
Q psy6451 80 SPNMVVHFYKDGSVNCKILDEHMKTLCKKH--LETRFIKLNVE 120 (332)
Q Consensus 80 ~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~--~~~~f~kvd~~ 120 (332)
+++++|.||++||+.|+...+.+..+...+ +.+.++.++.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d 61 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVD 61 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECC
Confidence 678999999999999999999999999998 67888887665
No 268
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.62 E-value=0.012 Score=43.21 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=41.6
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChH---HHHhCCcccCcEEEEEeCCeee
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPF---LTERLRIKVIPTLTLVKDSVTK 216 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~---l~~~~~I~~~PTl~~~~~G~~v 216 (332)
|+.|..+||+.|......|... ++.|..+|++..+. +....+...+|.+ |.+|+.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i 61 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE
Confidence 6778899999999998777742 56777788776653 3334588899997 5677654
No 269
>KOG0914|consensus
Probab=96.59 E-value=0.0019 Score=57.64 Aligned_cols=73 Identities=14% Similarity=0.122 Sum_probs=62.1
Q ss_pred hcCcceEecCCchhhhhhhcCCC--cEEEEEccCCChhhhhhHHHHHHHHHhh--hhceeeecccCCCCcccccCCC
Q psy6451 59 LGHGEYEEIPDEKKFFDLCKKSP--NMVVHFYKDGSVNCKILDEHMKTLCKKH--LETRFIKLNVERAPFLTGQQGH 131 (332)
Q Consensus 59 ~g~G~~~ev~~e~~f~~~~~~~~--~vvVhFy~p~~~~Ck~~~~~l~~LA~~~--~~~~f~kvd~~k~pfl~~k~g~ 131 (332)
.|-|++..+++.+.+++...+.+ .++|.||+.|++.|....|.+.+|..+| ...+|.++|....|-..++.+.
T Consensus 121 ~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfri 197 (265)
T KOG0914|consen 121 SGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRI 197 (265)
T ss_pred CCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheee
Confidence 45589999999998888886654 4999999999999999999999999998 4589999999888777666553
No 270
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=96.55 E-value=0.0033 Score=54.55 Aligned_cols=39 Identities=8% Similarity=0.227 Sum_probs=32.4
Q ss_pred cCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecc
Q psy6451 78 KKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLN 118 (332)
Q Consensus 78 ~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd 118 (332)
.++++++|+||++||+.|+.+.+.+.+++.. ++.++.++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~ 99 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVD 99 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEE
Confidence 4578999999999999999999999999875 35555554
No 271
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.53 E-value=0.023 Score=44.69 Aligned_cols=62 Identities=18% Similarity=0.061 Sum_probs=42.9
Q ss_pred ccCCcEEEEEe----cCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHH----HHhCCcccCcEEEEEeCCeee
Q psy6451 148 KKSPNMVVHFY----KDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFL----TERLRIKVIPTLTLVKDSVTK 216 (332)
Q Consensus 148 ~~~~~VvV~Fy----a~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l----~~~~~I~~~PTl~~~~~G~~v 216 (332)
-++..|||+-. +||||.|+.+...|..+ ++.|..+|+...+.+ .+..+-..+|.+ |.+|+.+
T Consensus 9 i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v--fi~g~~i 78 (97)
T TIGR00365 9 IKENPVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL--YVKGEFV 78 (97)
T ss_pred hccCCEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEE--EECCEEE
Confidence 34456666654 39999999999877664 466778888776653 344566788887 5677644
No 272
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=96.46 E-value=0.0031 Score=64.02 Aligned_cols=40 Identities=10% Similarity=0.154 Sum_probs=34.9
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHHhhh--hceeeecc
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLN 118 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd 118 (332)
++++|||+||++||+.|+.+.|.|.+++..+. ++.|+.+.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs 96 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVA 96 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEe
Confidence 57889999999999999999999999999875 56666654
No 273
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.33 E-value=0.019 Score=44.38 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=42.2
Q ss_pred CCcEEEEEec----CCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHH----HHhCCcccCcEEEEEeCCeee
Q psy6451 150 SPNMVVHFYK----DGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFL----TERLRIKVIPTLTLVKDSVTK 216 (332)
Q Consensus 150 ~~~VvV~Fya----~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l----~~~~~I~~~PTl~~~~~G~~v 216 (332)
+.+|||.-.. |||+.|+.+...|..+. +.|..+|+...+.+ .+..+-..+|++ |.+|+.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~-----i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~i 74 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG-----VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGELV 74 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC-----CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEEE
Confidence 4566665543 89999999998777653 66777787776654 444677889997 5578643
No 274
>KOG2603|consensus
Probab=96.32 E-value=0.027 Score=52.94 Aligned_cols=63 Identities=16% Similarity=0.296 Sum_probs=53.8
Q ss_pred cCCcEEEEEecC----CChhhHHHHHHHHHHHHHcC----C-----ceEEEEECcCChHHHHhCCcccCcEEEEEe
Q psy6451 149 KSPNMVVHFYKD----GSVNCKILDEHMKTLCKKHL----E-----TRFIKLNVERAPFLTERLRIKVIPTLTLVK 211 (332)
Q Consensus 149 ~~~~VvV~Fya~----wc~~Ck~l~~~l~~La~~~~----~-----v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~ 211 (332)
.+-.++|.|.|. .|.-|+.....+..+|..+. . +-|+.||.++.|++-+.+++.++|++++|.
T Consensus 59 rNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l~ln~~P~l~~f~ 134 (331)
T KOG2603|consen 59 RNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQLNLNNVPHLVLFS 134 (331)
T ss_pred CCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHhcccCCCeEEEeC
Confidence 345677888865 59999999999999998652 1 578999999999999999999999999994
No 275
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.27 E-value=0.0063 Score=61.74 Aligned_cols=63 Identities=17% Similarity=0.327 Sum_probs=49.4
Q ss_pred hcCcce-EecCCchhhhhhhcCCC--cEEEEEccCCChhhhhhHHHHH---HHHHhhhhceeeecccCC
Q psy6451 59 LGHGEY-EEIPDEKKFFDLCKKSP--NMVVHFYKDGSVNCKILDEHMK---TLCKKHLETRFIKLNVER 121 (332)
Q Consensus 59 ~g~G~~-~ev~~e~~f~~~~~~~~--~vvVhFy~p~~~~Ck~~~~~l~---~LA~~~~~~~f~kvd~~k 121 (332)
..|+.. +.++++..+.++..+.+ +|+|+|||+||.-||.+++... +.+.+..++..+++|..+
T Consensus 450 ~~~~~~~q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~ 518 (569)
T COG4232 450 VSHGEFWQPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTA 518 (569)
T ss_pred CccchhhhccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecC
Confidence 456766 77777778888887766 9999999999999999998765 334445778888888764
No 276
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.25 E-value=0.033 Score=51.46 Aligned_cols=77 Identities=17% Similarity=0.305 Sum_probs=50.6
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEEC-----c---------------------------------
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNV-----E--------------------------------- 190 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~-----~--------------------------------- 190 (332)
..+.+|+.|.-|.||+|+.+.+.+..+... ..+.+..+.. +
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 346789999999999999999888776543 1222221110 0
Q ss_pred ------------CChHHHHhCCcccCcEEEEEe-CCeeeeeEecccCcch
Q psy6451 191 ------------RAPFLTERLRIKVIPTLTLVK-DSVTKDYIVGFTELGN 227 (332)
Q Consensus 191 ------------~~~~l~~~~~I~~~PTl~~~~-~G~~v~~~~G~~~~~~ 227 (332)
++..+++.+||++.||+++-. +| .+..+.|+.+...
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~ 243 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQ 243 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHH
Confidence 011266679999999999876 35 4445677765543
No 277
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=96.24 E-value=0.0052 Score=53.98 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=30.6
Q ss_pred EEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccC
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVE 120 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~ 120 (332)
||.||++||+.|+..+|.|.+++..| ++.++-++.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D 108 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLD 108 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeC
Confidence 77899999999999999999999998 4666656544
No 278
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.024 Score=51.73 Aligned_cols=82 Identities=16% Similarity=0.124 Sum_probs=53.9
Q ss_pred cCcceEecCCchhhhhhhcC-CCcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCcccccC
Q psy6451 60 GHGEYEEIPDEKKFFDLCKK-SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYEEIP 138 (332)
Q Consensus 60 g~G~~~ev~~e~~f~~~~~~-~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ei~ 138 (332)
+.+.+.+++......-.=+. .+..++.|+...|++|+.+.+.+..........+
T Consensus 63 ~~~~~~~~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~------------------------- 117 (244)
T COG1651 63 GVTIVLYLTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVR------------------------- 117 (244)
T ss_pred cccceeeecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCc-------------------------
Confidence 44557777655544433332 3679999999999999777776655333222221
Q ss_pred ChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHH
Q psy6451 139 DEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCK 177 (332)
Q Consensus 139 ~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~ 177 (332)
-....+-|..++|++|+.....+...+.
T Consensus 118 -----------~~~~~~~f~~~~~~~~~~a~~~~~~~~~ 145 (244)
T COG1651 118 -----------LVLREFPFLDPACPYCRRAAQAARCAAD 145 (244)
T ss_pred -----------eEEEEeecCCCCcHHHHHHHHHHHHhcc
Confidence 2344667888999999888877766655
No 279
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.16 E-value=0.012 Score=48.95 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=34.3
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEEC
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNV 189 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~ 189 (332)
..+++|+.|+.++||+|+.+.|.+..+...++.+.+...+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 35788999999999999999999999988887766665543
No 280
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=96.14 E-value=0.0071 Score=49.37 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=34.3
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh--ceeeecc
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLN 118 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~--~~f~kvd 118 (332)
+++++||.||+.||+.|....++|.++...+.. +.++.+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~ 63 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVH 63 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEec
Confidence 467899999999999999999999999999864 5555554
No 281
>PRK10638 glutaredoxin 3; Provisional
Probab=96.04 E-value=0.036 Score=41.91 Aligned_cols=56 Identities=13% Similarity=0.213 Sum_probs=40.9
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChH----HHHhCCcccCcEEEEEeCCeee
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPF----LTERLRIKVIPTLTLVKDSVTK 216 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~----l~~~~~I~~~PTl~~~~~G~~v 216 (332)
|+.|..+||+.|+.+...|+.. ++.|..+|++..+. +.+..+...+|++ +.+|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 5677789999999999877753 46677788877653 3455677889987 4477544
No 282
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=95.98 E-value=0.01 Score=50.85 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=35.8
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh--ceeeecccC
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNVE 120 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~--~~f~kvd~~ 120 (332)
++++++|.||++||+.|+...+.|.+++..+.+ +.++.+...
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d 103 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVD 103 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 467899999999999999999999999999875 566666554
No 283
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.97 E-value=0.024 Score=42.88 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=46.0
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEE
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTL 209 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~ 209 (332)
|+.|..|.|+-|..+...|..++..++ +.+-.||++..+.+..+|+. .+|.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~-~IPVl~~ 55 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY-RIPVLHI 55 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT-STSEEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC-CCCEEEE
Confidence 678999999999999999988766554 88999999999999999996 7998654
No 284
>PRK10824 glutaredoxin-4; Provisional
Probab=95.93 E-value=0.021 Score=46.51 Aligned_cols=91 Identities=9% Similarity=0.018 Sum_probs=51.5
Q ss_pred HHHhccCCcEEEEEec----CCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHh----CCcccCcEEEEEeCCee
Q psy6451 144 FDLCKKSPNMVVHFYK----DGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTER----LRIKVIPTLTLVKDSVT 215 (332)
Q Consensus 144 ~~~~~~~~~VvV~Fya----~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~----~~I~~~PTl~~~~~G~~ 215 (332)
.+.+-++.+|||.--. ||||.|+.....|..+. +.|..+|+...+.+... -+-..+|. +|-+|+.
T Consensus 8 v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~-----i~~~~idi~~d~~~~~~l~~~sg~~TVPQ--IFI~G~~ 80 (115)
T PRK10824 8 IQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACG-----ERFAYVDILQNPDIRAELPKYANWPTFPQ--LWVDGEL 80 (115)
T ss_pred HHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcC-----CCceEEEecCCHHHHHHHHHHhCCCCCCe--EEECCEE
Confidence 3333445666665553 79999999998887653 55556677766654333 23344554 5668866
Q ss_pred eeeEecccCcchhhHhHHHHHHHHHHHcCCc
Q psy6451 216 KDYIVGFTELGNCADFSTEMLEWRIAQAGVI 246 (332)
Q Consensus 216 v~~~~G~~~~~~~~~f~~~~Le~~L~~~g~l 246 (332)
+.- ...+.. -+....|+.+|...|+.
T Consensus 81 IGG---~ddl~~--l~~~G~L~~lL~~~~~~ 106 (115)
T PRK10824 81 VGG---CDIVIE--MYQRGELQQLIKETAAK 106 (115)
T ss_pred EcC---hHHHHH--HHHCCCHHHHHHHHHhh
Confidence 532 222111 12233577777666553
No 285
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=95.92 E-value=0.0072 Score=48.71 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=28.3
Q ss_pred cCCCcEEEEEccCCChhhhhhHHHHHHHHHh
Q psy6451 78 KKSPNMVVHFYKDGSVNCKILDEHMKTLCKK 108 (332)
Q Consensus 78 ~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~ 108 (332)
.+++++||.||++||+.|+.+.+.|..++..
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~ 48 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAAD 48 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhh
Confidence 3457899999999999999999999999987
No 286
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.037 Score=41.92 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=38.2
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCCh-----HHHHhC-CcccCcEEEEEeCCe
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP-----FLTERL-RIKVIPTLTLVKDSV 214 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~-----~l~~~~-~I~~~PTl~~~~~G~ 214 (332)
|+.|..||||.|+.....|.+ .++.|..++++..+ ...... |.+.+|+|++ +|+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~-----~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR-----KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGK 62 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH-----cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCE
Confidence 567889999999999877762 34667777766554 334444 7899999764 454
No 287
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=95.75 E-value=0.011 Score=46.87 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=24.2
Q ss_pred cCCCcEEEEEccCCChhhhhhHHHHHHHHH
Q psy6451 78 KKSPNMVVHFYKDGSVNCKILDEHMKTLCK 107 (332)
Q Consensus 78 ~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~ 107 (332)
.+++++|+.|+.|||+.|+.+.+.+..+..
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~ 32 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDND 32 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHH
Confidence 356789999999999999999999987654
No 288
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=95.71 E-value=0.017 Score=48.12 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=34.8
Q ss_pred CCCcEEEEEccC-CChhhhhhHHHHHHHHHhhhh--ceeeecccC
Q psy6451 79 KSPNMVVHFYKD-GSVNCKILDEHMKTLCKKHLE--TRFIKLNVE 120 (332)
Q Consensus 79 ~~~~vvVhFy~p-~~~~Ck~~~~~l~~LA~~~~~--~~f~kvd~~ 120 (332)
+++++||+||+. ||+.|..-.+.+.++++.|.. +.++-+...
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~ 71 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSD 71 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEES
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEeccc
Confidence 477899999999 999999999999999988643 666666544
No 289
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=95.68 E-value=0.015 Score=49.28 Aligned_cols=38 Identities=8% Similarity=-0.029 Sum_probs=32.6
Q ss_pred CCcEEEEEccCCChhhhhhHHHHHHHHHhhh--hceeeecc
Q psy6451 80 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLN 118 (332)
Q Consensus 80 ~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd 118 (332)
+++|||.|++.||+ |..-.+.|.++...|. ++.++-+.
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~ 61 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFP 61 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEec
Confidence 67899999999999 9999999999999985 35566654
No 290
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=95.59 E-value=0.037 Score=54.86 Aligned_cols=80 Identities=15% Similarity=0.267 Sum_probs=54.6
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHH---h---------CCcccCcEEEEEeCCeeeeeEec
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTE---R---------LRIKVIPTLTLVKDSVTKDYIVG 221 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~---~---------~~I~~~PTl~~~~~G~~v~~~~G 221 (332)
|+.|..||||+|+.+...|... ++.|..+|+++.+...+ + .|.+++|++++ +|+. +.|
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~---igG 73 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVH---IGG 73 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEE---EeC
Confidence 7789999999999998777653 58888899987764222 2 46789999865 6753 455
Q ss_pred ccCcchhhHhHHHHHHHHHHHcCCcc
Q psy6451 222 FTELGNCADFSTEMLEWRIAQAGVID 247 (332)
Q Consensus 222 ~~~~~~~~~f~~~~Le~~L~~~g~l~ 247 (332)
+.++. . ....|...+.-.+++.
T Consensus 74 f~~l~---~-~~g~l~~~~~~~~~~~ 95 (410)
T PRK12759 74 YDNLM---A-RAGEVIARVKGSSLTT 95 (410)
T ss_pred chHHH---H-HhCCHHHHhcCCcccc
Confidence 54432 1 3446666776666553
No 291
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=95.48 E-value=0.017 Score=38.94 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=33.4
Q ss_pred EEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCC
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP 123 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~p 123 (332)
++.|+.+||++|+.+.+.+..++....++.+..++.....
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDP 40 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCCh
Confidence 4789999999999999999999666677888888777554
No 292
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.47 E-value=0.092 Score=54.04 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=60.9
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEe-CCeee-eeEecccC
Q psy6451 151 PNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVK-DSVTK-DYIVGFTE 224 (332)
Q Consensus 151 ~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~-~G~~v-~~~~G~~~ 224 (332)
+..++.|+.+.|..|..+...|++++..-+.+++...|......++++|++...|++.++. +|+.. -+|.|...
T Consensus 367 ~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~ 442 (555)
T TIGR03143 367 PVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPS 442 (555)
T ss_pred CEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCc
Confidence 4457778888999999999999999987777888888888888999999999999999995 66433 45666543
No 293
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=95.45 E-value=0.13 Score=41.48 Aligned_cols=66 Identities=11% Similarity=0.191 Sum_probs=52.9
Q ss_pred HHhccCCcEEEEEecCCChhhHHHHHHHHHHHHH---cCC-ceEEEEECcCChHHHHhCCccc--CcEEEEEeC
Q psy6451 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKK---HLE-TRFIKLNVERAPFLTERLRIKV--IPTLTLVKD 212 (332)
Q Consensus 145 ~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~---~~~-v~f~kVd~~~~~~l~~~~~I~~--~PTl~~~~~ 212 (332)
....++.+..+.|| .-..-..+...+.++|++ |.+ +.|+.+|.+......+.||+.. +|++.+...
T Consensus 11 ~~~~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~ 82 (111)
T cd03072 11 ELTEEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSF 82 (111)
T ss_pred HHhcCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcc
Confidence 44455666666666 333347788999999999 988 9999999999888899999997 999998865
No 294
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=95.23 E-value=0.47 Score=38.90 Aligned_cols=97 Identities=14% Similarity=0.096 Sum_probs=63.8
Q ss_pred hHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHH-HHc---CCceEEEEECc-----CChHHHHhCCc--ccCcEEEE
Q psy6451 141 KKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLC-KKH---LETRFIKLNVE-----RAPFLTERLRI--KVIPTLTL 209 (332)
Q Consensus 141 ~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La-~~~---~~v~f~kVd~~-----~~~~l~~~~~I--~~~PTl~~ 209 (332)
-.|..++.+.+.+||.|=... |--.-.-.+..+| +.+ +++.++.|.+. .+.+|+++|+| ..+|.+.+
T Consensus 12 ~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~L 89 (126)
T PF07912_consen 12 LTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYL 89 (126)
T ss_dssp THHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEE
T ss_pred eehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEE
Confidence 368888999999999996443 2223344566777 333 44888888875 46789999999 67999999
Q ss_pred EeCC-eeeeeEecccCcchhhHhHHHHHHHHHHHcCC
Q psy6451 210 VKDS-VTKDYIVGFTELGNCADFSTEMLEWRIAQAGV 245 (332)
Q Consensus 210 ~~~G-~~v~~~~G~~~~~~~~~f~~~~Le~~L~~~g~ 245 (332)
|.+| ...-++. .-.+|+.+.|.+++.++..
T Consensus 90 F~~~~~~pv~~p------~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 90 FVGDKEEPVRYP------FDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp EESSTTSEEEE-------TCS-S-HHHHHHHHHHTSS
T ss_pred ecCCCCCCccCC------ccCCccHHHHHHHHHhCCC
Confidence 9843 2222331 1137888999999987744
No 295
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=95.16 E-value=0.028 Score=47.54 Aligned_cols=40 Identities=5% Similarity=-0.108 Sum_probs=34.3
Q ss_pred CCcEEEEEccCCChhhhhhHHHHHHHHHhhh--hceeeeccc
Q psy6451 80 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLNV 119 (332)
Q Consensus 80 ~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~ 119 (332)
++++||.|.++||+.|+.-.+.|.++...|. ++.++.+++
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 6779999999999999999999999999986 466666654
No 296
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=95.07 E-value=0.11 Score=41.96 Aligned_cols=54 Identities=9% Similarity=0.130 Sum_probs=45.2
Q ss_pred cCCChhhHHHHHHHHHHHHHcC-C-ceEEEEECcCChHHHHhCCccc----CcEEEEEeC
Q psy6451 159 KDGSVNCKILDEHMKTLCKKHL-E-TRFIKLNVERAPFLTERLRIKV----IPTLTLVKD 212 (332)
Q Consensus 159 a~wc~~Ck~l~~~l~~La~~~~-~-v~f~kVd~~~~~~l~~~~~I~~----~PTl~~~~~ 212 (332)
.+.-..-..+...+.++|++|. + +.|+-+|.+......+.||+.. +|++.++..
T Consensus 27 ~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~ 86 (111)
T cd03073 27 SKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTA 86 (111)
T ss_pred cCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeC
Confidence 3344555778999999999999 5 9999999998877899999984 999998864
No 297
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=95.06 E-value=0.024 Score=49.95 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=27.4
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHHhh
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKH 109 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~ 109 (332)
+++++||.|+++||+.|+...|.+.++...+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~ 103 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE 103 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc
Confidence 5678999999999999999999999887653
No 298
>PTZ00056 glutathione peroxidase; Provisional
Probab=95.00 E-value=0.031 Score=49.77 Aligned_cols=41 Identities=10% Similarity=0.019 Sum_probs=34.7
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh--ceeeeccc
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNV 119 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~--~~f~kvd~ 119 (332)
++++|||.|+++||+.|..-.+.|.++...|.. +.++-+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~ 80 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPT 80 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 367899999999999999999999999999863 56666654
No 299
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=95.00 E-value=0.045 Score=43.84 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=35.7
Q ss_pred CCCcEEEEEccC-CChhhhhhHHHHHHHHHhhh--hceeeecccC
Q psy6451 79 KSPNMVVHFYKD-GSVNCKILDEHMKTLCKKHL--ETRFIKLNVE 120 (332)
Q Consensus 79 ~~~~vvVhFy~p-~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~~ 120 (332)
.++++||.||+. ||+.|+.-.+.|.++...+. ++.++-+..+
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d 68 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD 68 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc
Confidence 468999999999 99999999999999999887 5777766543
No 300
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=94.91 E-value=0.038 Score=47.53 Aligned_cols=42 Identities=17% Similarity=0.274 Sum_probs=35.9
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHHhhh--hceeeecccC
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVE 120 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~~ 120 (332)
++.++|+.|+++||+.|....++|.+|...+. ++.|+.+...
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d 67 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSN 67 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecC
Confidence 56789999999999999999999999999987 4677766543
No 301
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.75 E-value=0.028 Score=62.15 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=33.7
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh--ceeeec
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKL 117 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~--~~f~kv 117 (332)
++++|||+|+++||+.|+...|+|.+|++.|.+ +.++.+
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV 459 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGV 459 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEE
Confidence 478999999999999999999999999999875 344544
No 302
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=94.74 E-value=0.041 Score=50.45 Aligned_cols=41 Identities=7% Similarity=-0.026 Sum_probs=34.7
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh--ceeeeccc
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNV 119 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~--~~f~kvd~ 119 (332)
+++++||.|+++||+.|....++|.+|...|.. +.++-+++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~ 140 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPC 140 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 357899999999999999999999999999853 56666654
No 303
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=94.70 E-value=0.044 Score=45.48 Aligned_cols=42 Identities=10% Similarity=0.152 Sum_probs=36.7
Q ss_pred CCCcEEEEEccCC-ChhhhhhHHHHHHHHHhhhhceeeecccC
Q psy6451 79 KSPNMVVHFYKDG-SVNCKILDEHMKTLCKKHLETRFIKLNVE 120 (332)
Q Consensus 79 ~~~~vvVhFy~p~-~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~ 120 (332)
+++++|+.||+.| |+.|..-.+.|.++...+.++.++.++.+
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d 67 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISAD 67 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 3678999999999 69999999999999999988888887654
No 304
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.44 Score=40.86 Aligned_cols=99 Identities=15% Similarity=0.183 Sum_probs=66.1
Q ss_pred CCCcccccCCCCcccccCChhHHHHHhccCCcEEEEEe-cCCChhhHHHHHHHHHHHHHcCC--ceEEEEECcC------
Q psy6451 121 RAPFLTGQQGHGEYEEIPDEKKFFDLCKKSPNMVVHFY-KDGSVNCKILDEHMKTLCKKHLE--TRFIKLNVER------ 191 (332)
Q Consensus 121 k~pfl~~k~g~g~~~ei~~e~~~~~~~~~~~~VvV~Fy-a~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~~~------ 191 (332)
.+|-+......|....+.+ -.+++||++|| ..++|.|-.-+-.|+....++.. +.++.|..+.
T Consensus 9 ~aPdF~Lp~~~g~~v~Lsd--------~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~ 80 (157)
T COG1225 9 KAPDFELPDQDGETVSLSD--------LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKK 80 (157)
T ss_pred cCCCeEeecCCCCEEehHH--------hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHH
Confidence 3444444444454433332 25679999999 77999999999888888877754 6777666653
Q ss_pred ---------------ChHHHHhCCccc------------CcEEEEE-eCCeeeeeEecccCcch
Q psy6451 192 ---------------APFLTERLRIKV------------IPTLTLV-KDSVTKDYIVGFTELGN 227 (332)
Q Consensus 192 ---------------~~~l~~~~~I~~------------~PTl~~~-~~G~~v~~~~G~~~~~~ 227 (332)
...+++.||+.. .++.+++ ++|.+...+..+...+.
T Consensus 81 F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h 144 (157)
T COG1225 81 FAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGH 144 (157)
T ss_pred HHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCccc
Confidence 245788888854 3444455 68998888866555544
No 305
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=94.49 E-value=0.035 Score=39.85 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=25.2
Q ss_pred EEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCC
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVER 121 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k 121 (332)
+.-|+++||++|+.+.+.|.. .++.|..+|...
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~ 34 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEK 34 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccC
Confidence 567999999999999888765 346666666653
No 306
>PLN02412 probable glutathione peroxidase
Probab=94.28 E-value=0.065 Score=46.25 Aligned_cols=41 Identities=10% Similarity=0.024 Sum_probs=34.7
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh--ceeeeccc
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNV 119 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~--~~f~kvd~ 119 (332)
+++++||.|+++||+.|..-.+.|..+...|.. +.++-+..
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~ 70 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPC 70 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecc
Confidence 357899999999999999999999999999975 55666654
No 307
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=93.91 E-value=0.98 Score=43.41 Aligned_cols=166 Identities=16% Similarity=0.223 Sum_probs=93.6
Q ss_pred cCcceEecCCchhhhhhhcCCCcEEEEEccCCChhhhh-----hHHHHHHHHHhh---hhceeeecccCCCCcccccCCC
Q psy6451 60 GHGEYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKI-----LDEHMKTLCKKH---LETRFIKLNVERAPFLTGQQGH 131 (332)
Q Consensus 60 g~G~~~ev~~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~-----~~~~l~~LA~~~---~~~~f~kvd~~k~pfl~~k~g~ 131 (332)
|.-+|..+ ++++|.+++++...++|+||.|--..--. |....-+||.+. .++.|..+|..+-.-+..+.|.
T Consensus 32 GkDRVi~L-neKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv 110 (383)
T PF01216_consen 32 GKDRVIDL-NEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV 110 (383)
T ss_dssp SS--CEEE--TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-
T ss_pred CccceEEc-chhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc
Confidence 33478898 68999999999999999999987543222 444444555554 3578899988875443333321
Q ss_pred ------------------C-----------------cccccCChhHH--HHHhccCCcEEEEEecCC-ChhhHHHHHHHH
Q psy6451 132 ------------------G-----------------EYEEIPDEKKF--FDLCKKSPNMVVHFYKDG-SVNCKILDEHMK 173 (332)
Q Consensus 132 ------------------g-----------------~~~ei~~e~~~--~~~~~~~~~VvV~Fya~w-c~~Ck~l~~~l~ 173 (332)
| .+..|++..++ ++.+.. .+-||=|+.+. ..+-+ .|+
T Consensus 111 ~E~~SiyVfkd~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied-~~klIGyFk~~~s~~yk----~Fe 185 (383)
T PF01216_consen 111 EEEGSIYVFKDGEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIED-DIKLIGYFKSEDSEHYK----EFE 185 (383)
T ss_dssp -STTEEEEEETTEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--S-S-EEEEE-SSTTSHHHH----HHH
T ss_pred cccCcEEEEECCcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhccc-ceeEEEEeCCCCcHHHH----HHH
Confidence 1 24456777776 444444 46666666664 44433 457
Q ss_pred HHHHHcCC-ceEEEEECcCChHHHHhCCcccCcEEEEEeC--CeeeeeEecccCcchhhHhHHHHHHHHHHHc
Q psy6451 174 TLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLTLVKD--SVTKDYIVGFTELGNCADFSTEMLEWRIAQA 243 (332)
Q Consensus 174 ~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~--G~~v~~~~G~~~~~~~~~f~~~~Le~~L~~~ 243 (332)
.+|..|.. ++|.. .-.+.+|++++.. +-.+-+|+- -+++.- .| ...+...++.++..+
T Consensus 186 eAAe~F~p~IkFfA---tfd~~vAk~L~lK-~nev~fyepF~~~pi~i-p~-------~p~~e~e~~~fi~~h 246 (383)
T PF01216_consen 186 EAAEHFQPYIKFFA---TFDKKVAKKLGLK-LNEVDFYEPFMDEPITI-PG-------KPYTEEELVEFIEEH 246 (383)
T ss_dssp HHHHHCTTTSEEEE---E-SHHHHHHHT-S-TT-EEEE-TTSSSEEEE-SS-------SS--HHHHHHHHHHT
T ss_pred HHHHhhcCceeEEE---EecchhhhhcCcc-ccceeeeccccCCCccC-CC-------CCCCHHHHHHHHHHh
Confidence 78888744 88875 4567789999987 777888863 333322 11 234555666666554
No 308
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=93.83 E-value=0.082 Score=43.77 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=31.6
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeee
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIK 116 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~k 116 (332)
..+..|+.|+.++|++|+.+.+.+..+...++.+.+.-
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~ 41 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVF 41 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEE
Confidence 35679999999999999999999999887777655443
No 309
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=93.82 E-value=0.086 Score=43.39 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=29.2
Q ss_pred CCCcEEEEEccCCChh-hhhhHHHHHHHHHhhhh
Q psy6451 79 KSPNMVVHFYKDGSVN-CKILDEHMKTLCKKHLE 111 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~-Ck~~~~~l~~LA~~~~~ 111 (332)
+++++||.|+++||+. |....+.|.++...+..
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~ 54 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGA 54 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhH
Confidence 4678999999999997 99999999999988753
No 310
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=93.82 E-value=0.17 Score=42.55 Aligned_cols=43 Identities=23% Similarity=0.361 Sum_probs=35.3
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHc--CC-ceEEEEECcC
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKH--LE-TRFIKLNVER 191 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~--~~-v~f~kVd~~~ 191 (332)
..+++|+.|+.+.||+|+.+.+.+..+.+++ ++ +.|+-.+.-.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~ 56 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPL 56 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSS
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccc
Confidence 4578899999999999999999999999998 44 8887777643
No 311
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=93.76 E-value=0.045 Score=40.79 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=25.5
Q ss_pred EEEEccCCChhhhhhHHHHHHHHHhhhhceeeeccc
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNV 119 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~ 119 (332)
|+-|+++||++|+.+.+.|.++.-. +...++.++.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~ 35 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQ 35 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeC
Confidence 4779999999999999999888722 1134455544
No 312
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=93.69 E-value=0.092 Score=45.25 Aligned_cols=41 Identities=7% Similarity=0.101 Sum_probs=35.4
Q ss_pred CCcEEEEEccCC-ChhhhhhHHHHHHHHHhhhhceeeecccC
Q psy6451 80 SPNMVVHFYKDG-SVNCKILDEHMKTLCKKHLETRFIKLNVE 120 (332)
Q Consensus 80 ~~~vvVhFy~p~-~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~ 120 (332)
++++||.||+.| |+.|..-.+.|.+++..+.++.++.+..+
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D 85 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISAD 85 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 678999999999 99999999999999999866777776544
No 313
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=93.68 E-value=0.39 Score=37.99 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=65.2
Q ss_pred cccCChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcC--ChHHHHhCCcc----cCcE-
Q psy6451 135 EEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVER--APFLTERLRIK----VIPT- 206 (332)
Q Consensus 135 ~ei~~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~--~~~l~~~~~I~----~~PT- 206 (332)
..|++-++|...+.-...|+|.|..+--..-..+. .|...|....+ -.++-|||.. ..-||.++.+. .-|.
T Consensus 4 e~i~d~KdfKKLLRTr~NVLvLy~ks~k~a~~~Lk-~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~ 82 (112)
T cd03067 4 EDISDHKDFKKLLRTRNNVLVLYSKSAKSAEALLK-LLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVE 82 (112)
T ss_pred ccccchHHHHHHHhhcCcEEEEEecchhhHHHHHH-HHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcch
Confidence 45778889999999899999998887665555554 67777877777 5677888886 67799999998 6664
Q ss_pred EEEEeCCeeeeeEec
Q psy6451 207 LTLVKDSVTKDYIVG 221 (332)
Q Consensus 207 l~~~~~G~~v~~~~G 221 (332)
+.-|++|.--..+-.
T Consensus 83 LkHYKdG~fHkdYdR 97 (112)
T cd03067 83 LKHYKDGDFHTEYNR 97 (112)
T ss_pred hhcccCCCccccccc
Confidence 556899976555543
No 314
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=93.62 E-value=0.75 Score=36.10 Aligned_cols=72 Identities=10% Similarity=0.173 Sum_probs=52.4
Q ss_pred ccccCChhHHHHHhc-cCCcEEEEEecCCChhhHHHHHHHHHHHHHc-CCceEEEEECcCChHHHHhCCcccCcEEEEEe
Q psy6451 134 YEEIPDEKKFFDLCK-KSPNMVVHFYKDGSVNCKILDEHMKTLCKKH-LETRFIKLNVERAPFLTERLRIKVIPTLTLVK 211 (332)
Q Consensus 134 ~~ei~~e~~~~~~~~-~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~-~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~ 211 (332)
+.+|.+..++..+++ .+..+||-|+..--. .....|.++|..+ ....|+-. ..+.++..+++. .|++++|+
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~---~~~~~~~~~~~~-~~~i~l~~ 74 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFAT---FDSKVAKKLGLK-MNEVDFYE 74 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEE---CcHHHHHHcCCC-CCcEEEeC
Confidence 356778888999998 788888877766444 3566788899888 55888543 333556777765 79999997
Q ss_pred C
Q psy6451 212 D 212 (332)
Q Consensus 212 ~ 212 (332)
+
T Consensus 75 ~ 75 (102)
T cd03066 75 P 75 (102)
T ss_pred C
Confidence 6
No 315
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=93.61 E-value=0.065 Score=49.97 Aligned_cols=34 Identities=38% Similarity=0.535 Sum_probs=23.0
Q ss_pred CCCcccccCChhHHHHHhcc---CCcEEEEEecCCCh
Q psy6451 130 GHGEYEEIPDEKKFFDLCKK---SPNMVVHFYKDGSV 163 (332)
Q Consensus 130 g~g~~~ei~~e~~~~~~~~~---~~~VvV~Fya~wc~ 163 (332)
.+|.+.+|.+.+.|.+.+.+ +.+||||||.|.++
T Consensus 123 ~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~ 159 (265)
T PF02114_consen 123 RFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFP 159 (265)
T ss_dssp ---SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSC
T ss_pred cCceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCc
Confidence 36788899998899998854 46899999999876
No 316
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=92.86 E-value=0.17 Score=42.04 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=32.1
Q ss_pred CcEEEEEc-cCCChhhhhhHHHHHHHHHhhh--hceeeeccc
Q psy6451 81 PNMVVHFY-KDGSVNCKILDEHMKTLCKKHL--ETRFIKLNV 119 (332)
Q Consensus 81 ~~vvVhFy-~p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~ 119 (332)
+++||.|| +.||+.|..-.+.|.+++..+. ++.++.+..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~ 70 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISV 70 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 67888887 8999999999999999999886 466666643
No 317
>PF13728 TraF: F plasmid transfer operon protein
Probab=92.85 E-value=0.19 Score=45.35 Aligned_cols=44 Identities=14% Similarity=0.216 Sum_probs=36.1
Q ss_pred CCcEEEEEccCCChhhhhhHHHHHHHHHhhh-hceeeecccCCCC
Q psy6451 80 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAP 123 (332)
Q Consensus 80 ~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~-~~~f~kvd~~k~p 123 (332)
..+-|+.||.++|+.|+.+.+.|..+|..|. .+..+.+|....+
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~ 164 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIP 164 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCc
Confidence 6779999999999999999999999999983 3455666655444
No 318
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=92.51 E-value=0.14 Score=38.74 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=33.2
Q ss_pred EEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCC
Q psy6451 83 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVER 121 (332)
Q Consensus 83 vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k 121 (332)
-|+-|+.|||+.|+.+-..|.+|+..+.++.|..+|...
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~ 40 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHA 40 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCC
Confidence 367899999999999999999999877778787777653
No 319
>KOG0913|consensus
Probab=92.44 E-value=0.025 Score=51.14 Aligned_cols=112 Identities=15% Similarity=0.207 Sum_probs=72.0
Q ss_pred ceEecCCchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhh--hhceeeecccCCCCccc-----ccCC-----
Q psy6451 63 EYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKH--LETRFIKLNVERAPFLT-----GQQG----- 130 (332)
Q Consensus 63 ~~~ev~~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~--~~~~f~kvd~~k~pfl~-----~k~g----- 130 (332)
.+..+ ++++..+.... -+++.||+|||+.|+-+.+|++..|.-- .++.+.++|+...|-+- ....
T Consensus 25 ~~~~~-~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHv 101 (248)
T KOG0913|consen 25 KLTRI-DEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHV 101 (248)
T ss_pred eeEEe-cccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEe
Confidence 45555 56777777654 4889999999999999999999999775 45677888887655332 2211
Q ss_pred ----CCcccccCChhHHHHHhccCCcEEEEEecCC-ChhhHH--HHHHHHHHHH
Q psy6451 131 ----HGEYEEIPDEKKFFDLCKKSPNMVVHFYKDG-SVNCKI--LDEHMKTLCK 177 (332)
Q Consensus 131 ----~g~~~ei~~e~~~~~~~~~~~~VvV~Fya~w-c~~Ck~--l~~~l~~La~ 177 (332)
...|.--.+.++|...+...++-++.-...| |+.+.. ....+=+++.
T Consensus 102 kDGeFrrysgaRdk~dfisf~~~r~w~~i~p~p~w~~p~S~~~~~~~~~~kl~~ 155 (248)
T KOG0913|consen 102 KDGEFRRYSGARDKNDFISFEEHREWQSIDPVPEWEKPDSTEMSSASSLFKLEE 155 (248)
T ss_pred eccccccccCcccchhHHHHHHhhhhhccCCcchhcCCCchHHHHHHHHHhhHH
Confidence 1234445567778888766666666554444 444333 3333444443
No 320
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=92.19 E-value=0.19 Score=44.79 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=34.0
Q ss_pred CCcEEEEEecCCChhhHHHHHHH---HHHHHHcCC-ceEEEEEC
Q psy6451 150 SPNMVVHFYKDGSVNCKILDEHM---KTLCKKHLE-TRFIKLNV 189 (332)
Q Consensus 150 ~~~VvV~Fya~wc~~Ck~l~~~l---~~La~~~~~-v~f~kVd~ 189 (332)
+++.||.|+...||+|..+.+.+ ..+.+.+++ ++|+++.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 46779999999999999999976 788888875 88887665
No 321
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=91.93 E-value=0.31 Score=40.14 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=30.2
Q ss_pred CCcEEEEEc-cCCChhhhhhHHHHHHHHHhhh--hceeeeccc
Q psy6451 80 SPNMVVHFY-KDGSVNCKILDEHMKTLCKKHL--ETRFIKLNV 119 (332)
Q Consensus 80 ~~~vvVhFy-~p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~ 119 (332)
..++||.|| +.||+.|+.-.+.|.++...+. ++.++.|..
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~ 65 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGP 65 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeC
Confidence 345555555 8999999999999999998884 466666543
No 322
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=91.92 E-value=1.4 Score=40.74 Aligned_cols=45 Identities=9% Similarity=0.056 Sum_probs=37.8
Q ss_pred CCcEEEEEccCCChhhhhhHHHHHHHHHhhh-hceeeecccCCCCc
Q psy6451 80 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPF 124 (332)
Q Consensus 80 ~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~-~~~f~kvd~~k~pf 124 (332)
..+-|+.||.+.|+.|..+.|.+..+|..|. .+.-+++|....|-
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~ 188 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPL 188 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCC
Confidence 4589999999999999999999999999985 45667887765543
No 323
>KOG3171|consensus
Probab=91.64 E-value=0.17 Score=45.35 Aligned_cols=81 Identities=21% Similarity=0.375 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHH-HhcCcceEecCCchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh
Q psy6451 34 SIEKLREDHLKKLKAKAKR-NQELK-ALGHGEYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE 111 (332)
Q Consensus 34 ~l~~~r~~Rl~el~~~~~~-~~~~~-~~g~G~~~ev~~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~ 111 (332)
-+++.|-+-|.+.-+..-+ .+... ..|-+.+..|.. ++ ++...+||+|.|...-|-.|+..+.-||..||-
T Consensus 118 ~yr~qrm~eMrq~l~~gp~~~~V~El~~gkqfld~idk--e~-----ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~ 190 (273)
T KOG3171|consen 118 KYRRQRMQEMRQKLSFGPRYGFVYELETGKQFLDTIDK--EL-----KSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI 190 (273)
T ss_pred HHHHHHHHHHHHHhhcCCccceEEEeccchhHHHHHhc--cc-----ceEEEEEEEecCCCchHHHHhhhHHHhhccCCc
Confidence 5677776666665555211 11100 122333444432 22 255799999999999999999999999999999
Q ss_pred ceeeecccCC
Q psy6451 112 TRFIKLNVER 121 (332)
Q Consensus 112 ~~f~kvd~~k 121 (332)
++|+++....
T Consensus 191 vKFckikss~ 200 (273)
T KOG3171|consen 191 VKFCKIKSSN 200 (273)
T ss_pred eeEEEeeecc
Confidence 9999987653
No 324
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=91.37 E-value=0.18 Score=40.31 Aligned_cols=27 Identities=7% Similarity=0.239 Sum_probs=22.7
Q ss_pred hhcCCCcEEEEEccCCChhhhhhHHHH
Q psy6451 76 LCKKSPNMVVHFYKDGSVNCKILDEHM 102 (332)
Q Consensus 76 ~~~~~~~vvVhFy~p~~~~Ck~~~~~l 102 (332)
+-++.++++|+|+++||..|+.|....
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~v 39 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDL 39 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHH
Confidence 335578899999999999999998754
No 325
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=91.15 E-value=0.4 Score=44.49 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=37.7
Q ss_pred CCcEEEEEccCCChhhhhhHHHHHHHHHhhh-hceeeecccCCCCc
Q psy6451 80 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPF 124 (332)
Q Consensus 80 ~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~-~~~f~kvd~~k~pf 124 (332)
..+-|+.||.+.|+.|+.+.+.+..+|..|. .+..+++|....|-
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~ 195 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPG 195 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCC
Confidence 3489999999999999999999999999985 46667877765444
No 326
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=91.09 E-value=0.14 Score=37.36 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=20.4
Q ss_pred EEEEccCCChhhhhhHHHHHHHHH
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTLCK 107 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~LA~ 107 (332)
++-|+++||+.|+.+.+.|.++..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~ 25 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGA 25 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCC
Confidence 567999999999999999876643
No 327
>KOG1752|consensus
Probab=91.00 E-value=0.74 Score=36.73 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=37.1
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCCh-H----HHHhCCcccCcEEEEEeCCeee
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP-F----LTERLRIKVIPTLTLVKDSVTK 216 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~-~----l~~~~~I~~~PTl~~~~~G~~v 216 (332)
||-|..+||+.|+.+...|.. .-...+++.+|-.... + +.+--+-+.+|.+ |-+|+.+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~---~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~v--FI~Gk~i 78 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD---LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNV--FIGGKFI 78 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh---CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEE--EECCEEE
Confidence 456888999999998866666 1123567777765443 2 2333445678875 4577655
No 328
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=90.77 E-value=0.43 Score=39.06 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=31.9
Q ss_pred CCcEEEEEc-cCCChhhhhhHHHHHHHHHhhh--hceeeecc
Q psy6451 80 SPNMVVHFY-KDGSVNCKILDEHMKTLCKKHL--ETRFIKLN 118 (332)
Q Consensus 80 ~~~vvVhFy-~p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd 118 (332)
++++||.|+ +.||+.|....+.|.++...+. ++.++.+.
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is 64 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVS 64 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 678999998 5899999999999999998875 35566554
No 329
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=90.74 E-value=0.23 Score=37.89 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=31.2
Q ss_pred EEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccC
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVE 120 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~ 120 (332)
|+-|..|||++|..+-..|.++...++++.|..+|..
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECC
Confidence 6779999999999999999998877777777776655
No 330
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=90.74 E-value=0.99 Score=33.54 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=45.8
Q ss_pred EEEEEecCCChhhHHHHHHHHHHHHHcCC--ceEEEEECcCChHHHHhCCcccCcEEE
Q psy6451 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNVERAPFLTERLRIKVIPTLT 208 (332)
Q Consensus 153 VvV~Fya~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~~~~~~l~~~~~I~~~PTl~ 208 (332)
++..|-+...+.+...-..+..+...+.+ ..+=-||+.+.|.+++.++|-..||++
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhh
Confidence 34455566668888888888888877754 677789999999999999999999976
No 331
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=90.69 E-value=0.37 Score=41.54 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=32.9
Q ss_pred CCcEEEEEc-cCCChhhhhhHHHHHHHHHhhhh--ceeeeccc
Q psy6451 80 SPNMVVHFY-KDGSVNCKILDEHMKTLCKKHLE--TRFIKLNV 119 (332)
Q Consensus 80 ~~~vvVhFy-~p~~~~Ck~~~~~l~~LA~~~~~--~~f~kvd~ 119 (332)
++++||.|| +.||+.|..-.+.|.+++..|.. +.++.|..
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~ 71 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVST 71 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 578999999 89999999999999999999854 55555543
No 332
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=90.41 E-value=1.7 Score=37.09 Aligned_cols=66 Identities=23% Similarity=0.135 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCC-ceEEEEECcCChHHHHhCCcccCcEEEEEeCCee-eeeEecccCcchhhHhHHHHHHHHHHHcC
Q psy6451 168 LDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVT-KDYIVGFTELGNCADFSTEMLEWRIAQAG 244 (332)
Q Consensus 168 l~~~l~~La~~~~~-v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~-v~~~~G~~~~~~~~~f~~~~Le~~L~~~g 244 (332)
+...|.++|..+.+ +.|+.+. .+.+++.+++.. |++++|+.+.. ...+.|. .|..+.|..++....
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~-------~~~~~~l~~fI~~~~ 75 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGD-------KFTPEELKKFIKKNS 75 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSS-------TTSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccc-------cCCHHHHHHHHHHhc
Confidence 45678899999985 8998877 556789999999 99999998543 3455552 356667777776554
No 333
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=90.41 E-value=1.3 Score=38.45 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=21.9
Q ss_pred EEecCCChhhHHHHHHHHHHHHHcCC
Q psy6451 156 HFYKDGSVNCKILDEHMKTLCKKHLE 181 (332)
Q Consensus 156 ~Fya~wc~~Ck~l~~~l~~La~~~~~ 181 (332)
+|..|.|+.|-.+.|.+.+|..+|+.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 68999999999999999999999987
No 334
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=90.40 E-value=0.38 Score=42.25 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=32.8
Q ss_pred CCcEEEEEc-cCCChhhhhhHHHHHHHHHhhh--hceeeecccC
Q psy6451 80 SPNMVVHFY-KDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVE 120 (332)
Q Consensus 80 ~~~vvVhFy-~p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~~ 120 (332)
++++||.|| +.||+.|..-.+.|..+...|. ++.++.+..+
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D 74 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD 74 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 678999999 9999999999999988888874 4555555433
No 335
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=90.37 E-value=0.44 Score=38.91 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=33.2
Q ss_pred CCCcEEEEEc-cCCChhhhhhHHHHHHHHHhh--hhceeeeccc
Q psy6451 79 KSPNMVVHFY-KDGSVNCKILDEHMKTLCKKH--LETRFIKLNV 119 (332)
Q Consensus 79 ~~~~vvVhFy-~p~~~~Ck~~~~~l~~LA~~~--~~~~f~kvd~ 119 (332)
+++++||.|+ ..||+.|....+.|.++...+ .++.|+.+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~ 64 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSV 64 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4678888888 789999999999999999987 3466666654
No 336
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=90.28 E-value=2.8 Score=32.94 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=52.1
Q ss_pred ccccCChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHc-CCceEEEEECcCChHHHHhCCcccCcEEEEEe
Q psy6451 134 YEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKH-LETRFIKLNVERAPFLTERLRIKVIPTLTLVK 211 (332)
Q Consensus 134 ~~ei~~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~-~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~ 211 (332)
+.++.+.+++...+.....+||-|+..--. .+...+.++|..+ ....|+-... +.++..+++ .|++++|+
T Consensus 2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~---~~~~~~~~~--~~~ivl~~ 72 (104)
T cd03069 2 SVELRTEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSD---KQLLEKYGY--GEGVVLFR 72 (104)
T ss_pred ccccCCHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEECh---HHHHHhcCC--CCceEEEe
Confidence 356778888888888888888888876544 3667788899888 4588855433 356788888 78899994
No 337
>PTZ00256 glutathione peroxidase; Provisional
Probab=90.11 E-value=0.51 Score=41.25 Aligned_cols=40 Identities=8% Similarity=-0.052 Sum_probs=31.0
Q ss_pred CCc-EEEEEccCCChhhhhhHHHHHHHHHhhhh--ceeeeccc
Q psy6451 80 SPN-MVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNV 119 (332)
Q Consensus 80 ~~~-vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~--~~f~kvd~ 119 (332)
+++ +|+.|++.||+.|..-.+.|.++.+.|.. +.++.+++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~ 82 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPC 82 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEec
Confidence 454 45566899999999999999999999863 55666653
No 338
>KOG2640|consensus
Probab=89.91 E-value=0.085 Score=49.69 Aligned_cols=87 Identities=14% Similarity=0.190 Sum_probs=65.7
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCc-eEEEEE-CcCChHHHHhCCcccCcEEEEEeCCeeeeeEecccCcc
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLET-RFIKLN-VERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELG 226 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v-~f~kVd-~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G~~~~~ 226 (332)
+...|-..||+.|||..+..+|.+.-....|+.+ .|. ++ .-.-|.+..+|++.+.|++++. +-..-.++-|-..+.
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~-vee~~~lpsv~s~~~~~~~ps~~~~-n~t~~~~~~~~r~l~ 152 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFA-VEESQALPSVFSSYGIHSEPSNLML-NQTCPASYRGERDLA 152 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhcccccccc-HHHHhhcccchhccccccCCcceee-ccccchhhcccccHH
Confidence 4688999999999999999999999988888853 333 32 3445777899999999998865 344555566767777
Q ss_pred hhhHhHHHHHH
Q psy6451 227 NCADFSTEMLE 237 (332)
Q Consensus 227 ~~~~f~~~~Le 237 (332)
++.+|.++.+-
T Consensus 153 sLv~fy~~i~~ 163 (319)
T KOG2640|consen 153 SLVNFYTEITP 163 (319)
T ss_pred HHHHHHHhhcc
Confidence 77777776553
No 339
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=89.03 E-value=1.3 Score=36.81 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=43.1
Q ss_pred EecCCchhhhhhhcC--CCcEEEEEccCCChhhhhhHHHHHHHHHhhhh-ceeeecccCCCC
Q psy6451 65 EEIPDEKKFFDLCKK--SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAP 123 (332)
Q Consensus 65 ~ev~~e~~f~~~~~~--~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~kvd~~k~p 123 (332)
..+++.....+++.. ...||+.|-+.|-+.|..|+..|.++|.+.-. ..+.-+|..+.|
T Consensus 3 ~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vp 64 (133)
T PF02966_consen 3 PHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVP 64 (133)
T ss_dssp EEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTH
T ss_pred cccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccch
Confidence 456667777888743 45589999999999999999999999998654 345566665444
No 340
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=88.88 E-value=0.47 Score=41.84 Aligned_cols=30 Identities=10% Similarity=0.018 Sum_probs=27.8
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHHh
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCKK 108 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~ 108 (332)
.++..||.|+|.||+.|..-.|.+..|+.+
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~ 87 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA 87 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc
Confidence 378899999999999999999999999875
No 341
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=88.85 E-value=0.98 Score=39.73 Aligned_cols=39 Identities=5% Similarity=-0.047 Sum_probs=31.0
Q ss_pred CCcEEEEEccCCChhhhhhHHHHHHHHHhhh--hceeeeccc
Q psy6451 80 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLNV 119 (332)
Q Consensus 80 ~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~ 119 (332)
++++||.|.|.||+.|+. .+.|.+|...|. ++.++-+.+
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~ 65 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPC 65 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeec
Confidence 578999999999999975 778999999885 355555543
No 342
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=88.48 E-value=0.53 Score=40.17 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=30.0
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHHhhhh
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE 111 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~ 111 (332)
.++..|+.|+.+.|++|+.+.+.+..+...+++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 578899999999999999999999999988764
No 343
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=88.41 E-value=0.34 Score=41.81 Aligned_cols=31 Identities=10% Similarity=0.153 Sum_probs=23.4
Q ss_pred chhhhhhhcCCCcEEEEEccCCChhhhhhHH
Q psy6451 70 EKKFFDLCKKSPNMVVHFYKDGSVNCKILDE 100 (332)
Q Consensus 70 e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~ 100 (332)
++.|..+-+..++++|+++.+||..|+.|+.
T Consensus 27 ~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~ 57 (163)
T PF03190_consen 27 EEALEKAKKENKPIFLSIGYSWCHWCHVMER 57 (163)
T ss_dssp HHHHHHHHHHT--EEEEEE-TT-HHHHHHHH
T ss_pred HHHHHHHHhcCCcEEEEEEecCCcchhhhcc
Confidence 4667777778899999999999999999986
No 344
>smart00594 UAS UAS domain.
Probab=87.93 E-value=0.53 Score=38.31 Aligned_cols=26 Identities=4% Similarity=0.192 Sum_probs=22.2
Q ss_pred hcCCCcEEEEEccCCChhhhhhHHHH
Q psy6451 77 CKKSPNMVVHFYKDGSVNCKILDEHM 102 (332)
Q Consensus 77 ~~~~~~vvVhFy~p~~~~Ck~~~~~l 102 (332)
.+..+.++|+|+++||..|+.|....
T Consensus 24 k~~~K~~lv~~~~~~c~~c~~~~r~v 49 (122)
T smart00594 24 SRQRRLLWLYLHSQDSPDSQVFNRDV 49 (122)
T ss_pred HhhcCCEEEEEeCCCCchHHHHHHHH
Confidence 35567899999999999999988754
No 345
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=87.64 E-value=1.8 Score=33.41 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=55.1
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHHcCC--ceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeeeeEecc
Q psy6451 151 PNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGF 222 (332)
Q Consensus 151 ~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G~ 222 (332)
.+++=.|.+...+.+...-..+..+...+.. ..+=-||+.+.|.+++.++|-..||++=. -=.++.+++|-
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~-~P~P~rriiGd 75 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKI-LPPPVRKIIGD 75 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhc-CCCCcceeecc
Confidence 4566677888889999888888888776543 66667899999999999999999996533 24467777773
No 346
>PRK09301 circadian clock protein KaiB; Provisional
Probab=87.49 E-value=1.7 Score=34.53 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=64.8
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC--ceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeeeeEecccCcc
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELG 226 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G~~~~~ 226 (332)
++.+++=.|.+...+.++..-..+..+...+.. ..+=-||+.+.|.+++.++|-..||++=. -=.++.+++|--
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~-~P~P~rriiGDl--- 79 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKI-LPPPVRKIIGDL--- 79 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhc-CCCCcceeeccc---
Confidence 346677788899999999988888888776543 66667899999999999999999996533 345677888732
Q ss_pred hhhHhHHHHHHHHHHHcCCc
Q psy6451 227 NCADFSTEMLEWRIAQAGVI 246 (332)
Q Consensus 227 ~~~~f~~~~Le~~L~~~g~l 246 (332)
.+.+++|.-.++.
T Consensus 80 -------sd~~kVL~~L~l~ 92 (103)
T PRK09301 80 -------SDREKVLIGLDLL 92 (103)
T ss_pred -------ccHHHHHHhcCCC
Confidence 2356666655554
No 347
>KOG3414|consensus
Probab=87.43 E-value=2.1 Score=35.33 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=37.8
Q ss_pred EecCCchhhhhhhcC--CCcEEEEEccCCChhhhhhHHHHHHHHHhhhh
Q psy6451 65 EEIPDEKKFFDLCKK--SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE 111 (332)
Q Consensus 65 ~ev~~e~~f~~~~~~--~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~ 111 (332)
..+++.....+++.. .+.||+-|-+.|-+.|-.|+..|.++|...-.
T Consensus 6 p~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn 54 (142)
T KOG3414|consen 6 PTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN 54 (142)
T ss_pred cccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh
Confidence 445666677777743 45699999999999999999999999988654
No 348
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=86.71 E-value=1.4 Score=46.02 Aligned_cols=80 Identities=13% Similarity=0.087 Sum_probs=60.6
Q ss_pred ChhHHHHHhccCCcEEEEEecCCChhhHHHHHH-H--HHHHHHcCC-ceEEEEECcCChHHHHhCC--------cccCcE
Q psy6451 139 DEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEH-M--KTLCKKHLE-TRFIKLNVERAPFLTERLR--------IKVIPT 206 (332)
Q Consensus 139 ~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~-l--~~La~~~~~-v~f~kVd~~~~~~l~~~~~--------I~~~PT 206 (332)
+++.|...-..++||++....+||.=|..|... | .++|.-... ..-+|||-++-|++.+.|. --+.|-
T Consensus 32 ~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPL 111 (667)
T COG1331 32 GEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPL 111 (667)
T ss_pred CHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCce
Confidence 456677777889999999999999999999864 2 345544433 7888999999888766653 568995
Q ss_pred -EEEEeCCeeeee
Q psy6451 207 -LTLVKDSVTKDY 218 (332)
Q Consensus 207 -l~~~~~G~~v~~ 218 (332)
+++-.+|+++..
T Consensus 112 tVfLTPd~kPFfa 124 (667)
T COG1331 112 TVFLTPDGKPFFA 124 (667)
T ss_pred eEEECCCCceeee
Confidence 555579998754
No 349
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=86.48 E-value=1.1 Score=39.38 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=22.8
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHH
Q psy6451 150 SPNMVVHFYKDGSVNCKILDEHMKT 174 (332)
Q Consensus 150 ~~~VvV~Fya~wc~~Ck~l~~~l~~ 174 (332)
++..|+.|+.|+|++|+.+.+.+..
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh
Confidence 5789999999999999999998876
No 350
>PHA03075 glutaredoxin-like protein; Provisional
Probab=86.28 E-value=1.2 Score=36.00 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=27.3
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHHcC
Q psy6451 151 PNMVVHFYKDGSVNCKILDEHMKTLCKKHL 180 (332)
Q Consensus 151 ~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~ 180 (332)
+.+++.|..|-|+-|+..+..+.+|..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 468999999999999999999999998875
No 351
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=86.23 E-value=1.3 Score=37.12 Aligned_cols=41 Identities=10% Similarity=0.232 Sum_probs=31.9
Q ss_pred CCCcEEEEEccC-CChhhhhhHHHHHHHHHhhh--hceeeeccc
Q psy6451 79 KSPNMVVHFYKD-GSVNCKILDEHMKTLCKKHL--ETRFIKLNV 119 (332)
Q Consensus 79 ~~~~vvVhFy~p-~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~ 119 (332)
+++++||.|++. ||+.|....+.|.+++..+. ++.++.+..
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~ 72 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGIST 72 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 357899999975 78899999999999988875 356666643
No 352
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=86.12 E-value=2.8 Score=35.56 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=37.9
Q ss_pred EEEEecC------CChhhHHHHHHHHHHHHHcCCceEEEEECcCChHH----HHhCCc----ccCcEEEEEeCCeee
Q psy6451 154 VVHFYKD------GSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFL----TERLRI----KVIPTLTLVKDSVTK 216 (332)
Q Consensus 154 vV~Fya~------wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l----~~~~~I----~~~PTl~~~~~G~~v 216 (332)
||.|+++ +|+.|..+...|+.+ ++.|-.+|++..+.. .+.++- ..+|.|+ -+|+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF--I~G~~I 71 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVF--VDGRYL 71 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE--ECCEEE
Confidence 4556666 899999999887754 478888998876543 334444 5677654 566544
No 353
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=85.64 E-value=1.3 Score=36.98 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=26.9
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHHhh
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKH 109 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~ 109 (332)
.++.+|+.|+.+.|++|+.+.+.+..+-..+
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~ 41 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKY 41 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhc
Confidence 3567999999999999999999999888887
No 354
>KOG2501|consensus
Probab=84.97 E-value=1.7 Score=37.22 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=47.3
Q ss_pred CCcEEEEEccCCChhhhhhHHHHHHHHH----hhh--hceeeecccCCCCcccccCCCCcccccCChhHHHHHhc--cCC
Q psy6451 80 SPNMVVHFYKDGSVNCKILDEHMKTLCK----KHL--ETRFIKLNVERAPFLTGQQGHGEYEEIPDEKKFFDLCK--KSP 151 (332)
Q Consensus 80 ~~~vvVhFy~p~~~~Ck~~~~~l~~LA~----~~~--~~~f~kvd~~k~pfl~~k~g~g~~~ei~~e~~~~~~~~--~~~ 151 (332)
++.|.+.|.|-||+.|+.+.|+|.+.=. .+. ++.|++.|- +..++.+... ...
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~-------------------~~~~~~~y~~~~~~~ 93 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR-------------------DEESLDEYMLEHHGD 93 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC-------------------CHHHHHHHHHhcCCC
Confidence 5889999999999999999988754433 322 345555442 2445555554 467
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHHcC
Q psy6451 152 NMVVHFYKDGSVNCKILDEHMKTLCKKHL 180 (332)
Q Consensus 152 ~VvV~Fya~wc~~Ck~l~~~l~~La~~~~ 180 (332)
+..|=|+.+ ..++|..+|.
T Consensus 94 W~~iPf~d~----------~~~~l~~ky~ 112 (157)
T KOG2501|consen 94 WLAIPFGDD----------LIQKLSEKYE 112 (157)
T ss_pred eEEecCCCH----------HHHHHHHhcc
Confidence 778888764 3456666663
No 355
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=84.88 E-value=1.2 Score=40.67 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=25.3
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHH
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCK 177 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~ 177 (332)
.++.+|+.|.-|.||+|+.+.+.+..+..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~ 134 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA 134 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc
Confidence 45788999999999999999999887754
No 356
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=84.87 E-value=0.91 Score=40.46 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=31.3
Q ss_pred CCcEEEEEccCCChhhhhhHHHH---HHHHHhhh-hceeeecc
Q psy6451 80 SPNMVVHFYKDGSVNCKILDEHM---KTLCKKHL-ETRFIKLN 118 (332)
Q Consensus 80 ~~~vvVhFy~p~~~~Ck~~~~~l---~~LA~~~~-~~~f~kvd 118 (332)
+++-||+||...|+||..+++.| ..+...++ ++.|+++.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 45679999999999999999976 77788876 46666553
No 357
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=84.17 E-value=0.67 Score=34.21 Aligned_cols=25 Identities=36% Similarity=0.345 Sum_probs=21.8
Q ss_pred EEEEccCCChhhhhhHHHHHHHHHh
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTLCKK 108 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~LA~~ 108 (332)
|+-|+++||+.|+.+...|..+...
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~ 26 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK 26 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC
Confidence 5779999999999999999887763
No 358
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=83.68 E-value=5.2 Score=33.03 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=26.4
Q ss_pred CcEEEEEccCCChhhhhhHHHHHHHHHhhhhc--eeeecc
Q psy6451 81 PNMVVHFYKDGSVNCKILDEHMKTLCKKHLET--RFIKLN 118 (332)
Q Consensus 81 ~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~--~f~kvd 118 (332)
+.-++-|..+||+-|...-|.|.++|...|.+ +++..+
T Consensus 42 ~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd 81 (129)
T PF14595_consen 42 PYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRD 81 (129)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HH
T ss_pred CcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEec
Confidence 34677789999999999999999999998754 455544
No 359
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=83.65 E-value=5.8 Score=28.45 Aligned_cols=57 Identities=5% Similarity=0.014 Sum_probs=35.9
Q ss_pred EEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcC-ChHHHHhCCcccCcEEEEEeCCee
Q psy6451 155 VHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVER-APFLTERLRIKVIPTLTLVKDSVT 215 (332)
Q Consensus 155 V~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~-~~~l~~~~~I~~~PTl~~~~~G~~ 215 (332)
+.|+.+||+.|..+.-.+++..- ...+..++... .+.+.+..+...+|++.. .+|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl---~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI---TVELREVELKNKPAEMLAASPKGTVPVLVL-GNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC---CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcE
Confidence 35678999999998755544322 24555555432 355666677889999853 34544
No 360
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=83.42 E-value=25 Score=29.24 Aligned_cols=108 Identities=12% Similarity=0.044 Sum_probs=56.0
Q ss_pred cccccCChhHHHHHhccCCcEEEEEecCCChhhHHHH-HHHHHHHHHcC--CceEEEEECcCChHHH---HhCC---ccc
Q psy6451 133 EYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILD-EHMKTLCKKHL--ETRFIKLNVERAPFLT---ERLR---IKV 203 (332)
Q Consensus 133 ~~~ei~~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~-~~l~~La~~~~--~v~f~kVd~~~~~~l~---~~~~---I~~ 203 (332)
++.++.+.++..+.++..+-..+.+-.+-||=-...+ |.... |-.+. .-+++.|-+....+.. ..|= --+
T Consensus 17 Gf~eL~T~e~Vd~~~~~~~GTtlVvVNSVCGCAag~ARPa~~~-al~~~kkPD~lvTVFAGqDkEAt~~aR~yf~~~pPS 95 (136)
T PF06491_consen 17 GFEELTTAEEVDEALKNKEGTTLVVVNSVCGCAAGNARPAAAM-ALQNDKKPDHLVTVFAGQDKEATAKAREYFEPYPPS 95 (136)
T ss_dssp T-EE--SHHHHHHHHHH--SEEEEEEE-SSHHHHHTHHHHHHH-HHHHSS--SEEEEEETTTSHHHHHHHHHTSTTS---
T ss_pred CccccCCHHHHHHHHhCCCCcEEEEEeccccccccccCHHHHH-HHhCCCCCCceEEeccCCCHHHHHHHHHhcCCCCCC
Confidence 4678888889999988444444444567777444433 44333 22222 2456666655544332 2221 246
Q ss_pred CcEEEEEeCCeeeeeEecccCcchhhHhHHHHHHHHHH
Q psy6451 204 IPTLTLVKDSVTKDYIVGFTELGNCADFSTEMLEWRIA 241 (332)
Q Consensus 204 ~PTl~~~~~G~~v~~~~G~~~~~~~~~f~~~~Le~~L~ 241 (332)
-|++.+|++|++++-+..-.=.|.-...+.+.|...+.
T Consensus 96 SPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af~ 133 (136)
T PF06491_consen 96 SPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDAFD 133 (136)
T ss_dssp SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHHH
T ss_pred CchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHHH
Confidence 78999999999998876543333334455555555443
No 361
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=83.31 E-value=1.8 Score=38.17 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=33.2
Q ss_pred CCcEEEEEc-cCCChhhhhhHHHHHHHHHhhh--hceeeecccC
Q psy6451 80 SPNMVVHFY-KDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVE 120 (332)
Q Consensus 80 ~~~vvVhFy-~p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~~ 120 (332)
++++|+.|| +.||+.|..-.+.|..+...|. ++.++.+..+
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D 74 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTD 74 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 568999999 9999999999999999998884 4556655443
No 362
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=82.74 E-value=1.7 Score=30.69 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=18.4
Q ss_pred EEEEccCCChhhhhhHHHHHHH
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTL 105 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~L 105 (332)
++-|+.+||++|..+...|.++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~ 23 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER 23 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC
Confidence 5778999999999988877653
No 363
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=82.44 E-value=14 Score=28.80 Aligned_cols=63 Identities=11% Similarity=0.061 Sum_probs=41.1
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEeCCeee-eeEeccc
Q psy6451 150 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTK-DYIVGFT 223 (332)
Q Consensus 150 ~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v-~~~~G~~ 223 (332)
..+|.+.++.+....|..+...++++|.--+.+.+-..+... ..|++.+..+|+.. -++.|..
T Consensus 18 ~~pV~l~~f~~~~~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP 81 (94)
T cd02974 18 ENPVELVASLDDSEKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIP 81 (94)
T ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecC
Confidence 355555444433399999999999999887776664322211 47999998887432 3455543
No 364
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=81.39 E-value=1.6 Score=44.46 Aligned_cols=55 Identities=4% Similarity=-0.094 Sum_probs=46.9
Q ss_pred CcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCccc
Q psy6451 81 PNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYE 135 (332)
Q Consensus 81 ~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ 135 (332)
+.-+--|+.|+|++|..+-..+.++|...|.+.+-.+++...|-+..+.+...++
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP 171 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVP 171 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccC
Confidence 4458899999999999999999999999999999899999888777776655443
No 365
>PRK15000 peroxidase; Provisional
Probab=81.18 E-value=2.3 Score=37.78 Aligned_cols=42 Identities=7% Similarity=0.109 Sum_probs=33.6
Q ss_pred CCCcEEEEEccC-CChhhhhhHHHHHHHHHhhh--hceeeecccC
Q psy6451 79 KSPNMVVHFYKD-GSVNCKILDEHMKTLCKKHL--ETRFIKLNVE 120 (332)
Q Consensus 79 ~~~~vvVhFy~p-~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~~ 120 (332)
+++++|+.||+. ||+.|..-.+.|..++..|. ++.++.+..+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D 77 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD 77 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 467999999995 89999999999999999985 3555555444
No 366
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=81.18 E-value=1.6 Score=30.62 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=19.9
Q ss_pred EEEEccCCChhhhhhHHHHHHHH
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTLC 106 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~LA 106 (332)
|+-|+++||+.|+.+...|..+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~ 24 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG 24 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC
Confidence 56789999999999999887665
No 367
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=80.40 E-value=32 Score=31.58 Aligned_cols=149 Identities=16% Similarity=0.193 Sum_probs=89.5
Q ss_pred ceEecCCch--hhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhhhc-eeeecccCCC-CcccccCCCCcccccC
Q psy6451 63 EYEEIPDEK--KFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLET-RFIKLNVERA-PFLTGQQGHGEYEEIP 138 (332)
Q Consensus 63 ~~~ev~~e~--~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~-~f~kvd~~k~-pfl~~k~g~g~~~ei~ 138 (332)
.|+.++.++ .+.+..+.+.++|+.|-+=+|+.=..--..+.+|+..|.++ .|+-|=..++ |.--...+... ..+.
T Consensus 83 ~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~-~~i~ 161 (237)
T PF00837_consen 83 PVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNP-YEIP 161 (237)
T ss_pred ceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCc-eeec
Confidence 677776554 78888899999999999999998888889999999999984 5766644432 22111111111 2233
Q ss_pred ChhHHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcE-EEEEeCCeeee
Q psy6451 139 DEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPT-LTLVKDSVTKD 217 (332)
Q Consensus 139 ~e~~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PT-l~~~~~G~~v~ 217 (332)
..+.+.+. |... +.|...++...+ -||.-.+ .....|+ .+|. +.++++|+++.
T Consensus 162 qh~sledR------------------~~aA----~~l~~~~~~~pi-~vD~mdN-~~~~~Yg--A~PeRlyIi~~gkv~Y 215 (237)
T PF00837_consen 162 QHRSLEDR------------------LRAA----KLLKEEFPQCPI-VVDTMDN-NFNKAYG--ALPERLYIIQDGKVVY 215 (237)
T ss_pred CCCCHHHH------------------HHHH----HHHHhhCCCCCE-EEEccCC-HHHHHhC--CCcceEEEEECCEEEE
Confidence 32222222 1111 234445566554 4554443 3355666 4665 56678998653
Q ss_pred eEecccCcchhhHhHHHHHHHHHHHc
Q psy6451 218 YIVGFTELGNCADFSTEMLEWRIAQA 243 (332)
Q Consensus 218 ~~~G~~~~~~~~~f~~~~Le~~L~~~ 243 (332)
. -|..+ ..+..+.|+.+|.++
T Consensus 216 ~-Gg~GP----~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 216 K-GGPGP----FGYSPEELREWLEKY 236 (237)
T ss_pred e-CCCCC----CcCCHHHHHHHHHhc
Confidence 2 23222 356678888888754
No 368
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=80.36 E-value=2 Score=31.69 Aligned_cols=34 Identities=12% Similarity=0.251 Sum_probs=25.9
Q ss_pred EEEccCCChhhhhhHHHHHHHHHhhhhceeeeccc
Q psy6451 85 VHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNV 119 (332)
Q Consensus 85 VhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~ 119 (332)
|.+|.++|+.|..+...+.+++..+. +.+--++.
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~ 36 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDI 36 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEET
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEc
Confidence 45578999999999999999998884 55433333
No 369
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=79.90 E-value=1.6 Score=32.46 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=22.5
Q ss_pred EEEEccCCChhhhhhHHHHHHHHHhh
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTLCKKH 109 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~LA~~~ 109 (332)
|..|+.+.|++|..+.+.+.++....
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~ 26 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYAD 26 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhc
Confidence 46899999999999999999987443
No 370
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=79.37 E-value=1 Score=34.30 Aligned_cols=52 Identities=25% Similarity=0.363 Sum_probs=43.9
Q ss_pred EecCCChhhHHHHHHHHHHHHHcCC--ceEEEEECcCChHHHHhCCcccCcEEE
Q psy6451 157 FYKDGSVNCKILDEHMKTLCKKHLE--TRFIKLNVERAPFLTERLRIKVIPTLT 208 (332)
Q Consensus 157 Fya~wc~~Ck~l~~~l~~La~~~~~--v~f~kVd~~~~~~l~~~~~I~~~PTl~ 208 (332)
|-+...+.+..+...+..+...+.+ ..+--||+.+.|.+++.++|-..||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 4455667788888889999888655 778889999999999999999999976
No 371
>COG2118 DNA-binding protein [General function prediction only]
Probab=79.28 E-value=2.1 Score=34.43 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=18.3
Q ss_pred CChHHHHHHHHHHHHHHHHHH
Q psy6451 30 LDLDSIEKLREDHLKKLKAKA 50 (332)
Q Consensus 30 ~d~~~l~~~r~~Rl~el~~~~ 50 (332)
+||++|+.+|+++|.+|+.+.
T Consensus 1 mdd~eLEeIRrrkl~eLQrq~ 21 (116)
T COG2118 1 MDDEELEEIRRRKLAELQRQA 21 (116)
T ss_pred CChHHHHHHHHHHHHHHHHhh
Confidence 366799999999999999955
No 372
>KOG3425|consensus
Probab=79.27 E-value=4.8 Score=32.93 Aligned_cols=49 Identities=14% Similarity=0.316 Sum_probs=37.5
Q ss_pred CCCcEEEEEcc--------CCChhhhhhHHHHHHHHHhhh-hceeeecccCCCCcccc
Q psy6451 79 KSPNMVVHFYK--------DGSVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTG 127 (332)
Q Consensus 79 ~~~~vvVhFy~--------p~~~~Ck~~~~~l~~LA~~~~-~~~f~kvd~~k~pfl~~ 127 (332)
+.+.+.|-|++ +||+-|.+..|.+...-+..+ ++.|+.+.+.+-|.+-.
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~ 81 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKD 81 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccC
Confidence 34458888875 689999999999988877555 47899998887665443
No 373
>KOG2507|consensus
Probab=79.06 E-value=15 Score=36.30 Aligned_cols=84 Identities=13% Similarity=0.165 Sum_probs=59.0
Q ss_pred HHhccCCcEEEEEecCCChhhHHHHHH--HHHHHHHcC--CceEEEEECc--CChHHHHhCCcccCcEEEEE-eCCeeee
Q psy6451 145 DLCKKSPNMVVHFYKDGSVNCKILDEH--MKTLCKKHL--ETRFIKLNVE--RAPFLTERLRIKVIPTLTLV-KDSVTKD 217 (332)
Q Consensus 145 ~~~~~~~~VvV~Fya~wc~~Ck~l~~~--l~~La~~~~--~v~f~kVd~~--~~~~l~~~~~I~~~PTl~~~-~~G~~v~ 217 (332)
...+.++.++|.|-+-.......|+.. ....-.... .+..++|.+. .+..++.-|++..+|+++++ ..|.++.
T Consensus 13 a~aK~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLe 92 (506)
T KOG2507|consen 13 AEAKGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLE 92 (506)
T ss_pred HHhhcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeE
Confidence 334677888888888888877777722 222222211 2566666654 45677889999999999988 6899999
Q ss_pred eEecccCcchh
Q psy6451 218 YIVGFTELGNC 228 (332)
Q Consensus 218 ~~~G~~~~~~~ 228 (332)
.+.|+...+.+
T Consensus 93 vitg~v~adeL 103 (506)
T KOG2507|consen 93 VITGFVTADEL 103 (506)
T ss_pred EeeccccHHHH
Confidence 99999875544
No 374
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=78.85 E-value=4.5 Score=32.08 Aligned_cols=35 Identities=3% Similarity=0.016 Sum_probs=24.5
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCCh
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP 193 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~ 193 (332)
|..|+.|+|+.|+.....|+.- ++.|--+|+.+.|
T Consensus 1 i~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~p 35 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKDG 35 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccCC
Confidence 3568899999999987655432 5666666766553
No 375
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=78.83 E-value=9.7 Score=26.92 Aligned_cols=52 Identities=12% Similarity=0.184 Sum_probs=33.9
Q ss_pred EEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECc----CChHHHHhCCcccCcEEEE
Q psy6451 155 VHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVE----RAPFLTERLRIKVIPTLTL 209 (332)
Q Consensus 155 V~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~----~~~~l~~~~~I~~~PTl~~ 209 (332)
..|+.++|+.|..+.-.+....-. .....++.. ..+.+.+..+-..+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID---VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC---ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 357788999999988766554222 334445432 2455666677788999864
No 376
>PHA03050 glutaredoxin; Provisional
Probab=78.39 E-value=2.7 Score=33.65 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=21.4
Q ss_pred EEEEEccCCChhhhhhHHHHHHHHHhh
Q psy6451 83 MVVHFYKDGSVNCKILDEHMKTLCKKH 109 (332)
Q Consensus 83 vvVhFy~p~~~~Ck~~~~~l~~LA~~~ 109 (332)
-|+-|..|||++|+++...|..+.-.+
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~ 40 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKR 40 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCc
Confidence 377899999999999888886665433
No 377
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=77.78 E-value=3.4 Score=36.50 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=32.2
Q ss_pred CCcEEEEEcc-CCChhhhhhHHHHHHHHHhhh--hceeeecccC
Q psy6451 80 SPNMVVHFYK-DGSVNCKILDEHMKTLCKKHL--ETRFIKLNVE 120 (332)
Q Consensus 80 ~~~vvVhFy~-p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~~ 120 (332)
++++|+.||+ .||++|..-...|..++..|. ++.++-++.+
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d 79 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMD 79 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 5689999995 779999988889999999886 4566665544
No 378
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=76.85 E-value=9.7 Score=27.14 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=29.5
Q ss_pred EEecCCChhhHHHHHHHHHHHHHcCCceEE--EEECcCChHHHHhCCcccCcEEEEEeCCe
Q psy6451 156 HFYKDGSVNCKILDEHMKTLCKKHLETRFI--KLNVERAPFLTERLRIKVIPTLTLVKDSV 214 (332)
Q Consensus 156 ~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~--kVd~~~~~~l~~~~~I~~~PTl~~~~~G~ 214 (332)
.++.++|+.|..+.-.|... ++.|- .++........+..+-..+|++.. .+|.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~-----gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~ 57 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK-----NIPVEQIILQNDDEATPIRMIGAKQVPILEK-DDGS 57 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc-----CCCeEEEECCCCchHHHHHhcCCCccCEEEe-CCCe
Confidence 56788999999887555443 43333 333322222223345567888743 3353
No 379
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=76.63 E-value=3.2 Score=32.63 Aligned_cols=34 Identities=0% Similarity=0.009 Sum_probs=24.6
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCC
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA 192 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~ 192 (332)
|..|+.|+|+.|+.....|+.. ++.|-.+|+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~ 34 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLKE 34 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccC
Confidence 3578899999999988666542 466667776554
No 380
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=76.59 E-value=2.5 Score=30.67 Aligned_cols=32 Identities=13% Similarity=0.434 Sum_probs=23.0
Q ss_pred EEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccC
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVE 120 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~ 120 (332)
|+-|+.|+|+.|+.+...|.+. ++.|..++..
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~ 34 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINID 34 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECC
Confidence 5678899999999988888753 3444444443
No 381
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=76.32 E-value=7 Score=33.09 Aligned_cols=52 Identities=10% Similarity=-0.028 Sum_probs=36.3
Q ss_pred CCcEEEEEe-cCCChhhHHH-HHHHHHHHHHcC--Cc-eEEEEECcCCh---HHHHhCCc
Q psy6451 150 SPNMVVHFY-KDGSVNCKIL-DEHMKTLCKKHL--ET-RFIKLNVERAP---FLTERLRI 201 (332)
Q Consensus 150 ~~~VvV~Fy-a~wc~~Ck~l-~~~l~~La~~~~--~v-~f~kVd~~~~~---~l~~~~~I 201 (332)
++++|+.|| +.||+.|-.. .+.|.....++. ++ .++.|..+... ..++.+++
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 445655555 8899999998 999998888875 45 47777776543 23445555
No 382
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=75.81 E-value=2 Score=34.37 Aligned_cols=34 Identities=6% Similarity=0.262 Sum_probs=25.1
Q ss_pred EEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCCh
Q psy6451 155 VHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP 193 (332)
Q Consensus 155 V~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~ 193 (332)
..|+.|+|+.|+.....|+. .++.|-.+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~~ 35 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-----HGVDYTAIDIVEEP 35 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-----cCCceEEecccCCc
Confidence 46889999999998866654 25677777776554
No 383
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=75.17 E-value=23 Score=28.01 Aligned_cols=73 Identities=5% Similarity=0.086 Sum_probs=51.0
Q ss_pred ccccCChhHHHHHhccC-CcEEEEEecCCChhhHHHHHHHHHHHHHc-CCceEEEEECcCChHHHHhCCcccCcEEEEEe
Q psy6451 134 YEEIPDEKKFFDLCKKS-PNMVVHFYKDGSVNCKILDEHMKTLCKKH-LETRFIKLNVERAPFLTERLRIKVIPTLTLVK 211 (332)
Q Consensus 134 ~~ei~~e~~~~~~~~~~-~~VvV~Fya~wc~~Ck~l~~~l~~La~~~-~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~ 211 (332)
+.++.+.+++...+... ..+||-|+..--+ .....+.++|..+ ....|+-... ..+..++++. .|++++|+
T Consensus 2 v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~---~~~~~~~~~~-~~~vvl~r 74 (107)
T cd03068 2 SKQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFD---SEIFKSLKVS-PGQLVVFQ 74 (107)
T ss_pred ceEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEECh---HHHHHhcCCC-CCceEEEC
Confidence 35677888888888776 7777777766443 3566788899888 5588855333 3567788775 57788885
Q ss_pred CC
Q psy6451 212 DS 213 (332)
Q Consensus 212 ~G 213 (332)
.-
T Consensus 75 p~ 76 (107)
T cd03068 75 PE 76 (107)
T ss_pred cH
Confidence 43
No 384
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.82 E-value=12 Score=29.60 Aligned_cols=55 Identities=13% Similarity=0.057 Sum_probs=39.1
Q ss_pred cCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCC-cccCcEEE-EEeCCeeee
Q psy6451 159 KDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLR-IKVIPTLT-LVKDSVTKD 217 (332)
Q Consensus 159 a~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~-I~~~PTl~-~~~~G~~v~ 217 (332)
.|-||.+..+...|..+. .+.|..+|+-..+++-+.++ ....||+- +|-+|+.+.
T Consensus 27 ~P~CGFS~~~vqiL~~~g----~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvG 83 (105)
T COG0278 27 FPQCGFSAQAVQILSACG----VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVG 83 (105)
T ss_pred CCCCCccHHHHHHHHHcC----CcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEec
Confidence 456777666665554322 18999999999999877665 46789975 888997663
No 385
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=74.45 E-value=7.4 Score=29.50 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=39.5
Q ss_pred EecCCchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhhh-hceeeec
Q psy6451 65 EEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHL-ETRFIKL 117 (332)
Q Consensus 65 ~ev~~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~-~~~f~kv 117 (332)
.+|++.+++..++...+.+||-||.+++. .....|..+|..+. .+.|..+
T Consensus 2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~ 52 (97)
T cd02981 2 KELTSKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHT 52 (97)
T ss_pred eecCCHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEE
Confidence 46777777888888899999999999876 57788999998885 5666543
No 386
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=73.49 E-value=4.1 Score=37.62 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=25.5
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHHh
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCKK 108 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~ 108 (332)
+.+++|+.|.-|.|++|+++...+..+...
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~ 145 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS 145 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc
Confidence 456789999999999999999998776554
No 387
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=73.06 E-value=3.8 Score=28.09 Aligned_cols=51 Identities=10% Similarity=0.098 Sum_probs=31.6
Q ss_pred EEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCCh--HHHHhCCcccCcEEEE
Q psy6451 156 HFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP--FLTERLRIKVIPTLTL 209 (332)
Q Consensus 156 ~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~--~l~~~~~I~~~PTl~~ 209 (332)
.|+.++|+.|..+.-.+....-. .....++..... .+.+..+-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 57889999999887666655222 334444433221 2445667788998764
No 388
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=72.88 E-value=4.1 Score=28.27 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=18.2
Q ss_pred EEEEccCCChhhhhhHHHHHHH
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTL 105 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~L 105 (332)
|+-|..++|++|+.+...|...
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~ 22 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK 22 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT
T ss_pred cEEEEcCCCcCHHHHHHHHHHc
Confidence 5678999999999988888433
No 389
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=72.49 E-value=3.9 Score=41.66 Aligned_cols=55 Identities=7% Similarity=-0.014 Sum_probs=46.1
Q ss_pred CcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCccc
Q psy6451 81 PNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYE 135 (332)
Q Consensus 81 ~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ 135 (332)
+.-+--|+.|+|++|..+-..+.+||...|.+..-.+++...|-+..+.+...++
T Consensus 118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP 172 (515)
T TIGR03140 118 PLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVP 172 (515)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccC
Confidence 4458889999999999999999999999999888889998888777766655433
No 390
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=72.00 E-value=6.3 Score=36.10 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=45.4
Q ss_pred HHHHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCC-ceEEEEECcCC
Q psy6451 142 KFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERA 192 (332)
Q Consensus 142 ~~~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~-v~f~kVd~~~~ 192 (332)
.+.+..+.+.|.|+.|.+-.||+=..--+.+++|+.+|.+ +.|+-|-+.++
T Consensus 94 ~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EA 145 (237)
T PF00837_consen 94 RILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEA 145 (237)
T ss_pred eHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhh
Confidence 5778889999999999999999999999999999999998 67888776664
No 391
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=71.74 E-value=4.1 Score=30.21 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=21.3
Q ss_pred CCcEEEEEccCCChhhhhhHHHHHHH
Q psy6451 80 SPNMVVHFYKDGSVNCKILDEHMKTL 105 (332)
Q Consensus 80 ~~~vvVhFy~p~~~~Ck~~~~~l~~L 105 (332)
.+.-|+-|..+||++|..+-..|..+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~ 31 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK 31 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc
Confidence 34567889999999999998888643
No 392
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=71.67 E-value=12 Score=27.12 Aligned_cols=51 Identities=10% Similarity=0.124 Sum_probs=30.3
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcC--ChHHHHhCCcccCcEEEEE
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVER--APFLTERLRIKVIPTLTLV 210 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~--~~~l~~~~~I~~~PTl~~~ 210 (332)
+..|+.++|+.|+.+.-.|... ++.|-.++++. .+.+ ..-+-..+|++..=
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-----gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-----GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-----CCceEEEECCchhHHHH-HHhCCCccCEEEEC
Confidence 4567789999999988555443 33333333332 2233 23456789988753
No 393
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=71.18 E-value=7.8 Score=31.14 Aligned_cols=35 Identities=6% Similarity=0.107 Sum_probs=26.5
Q ss_pred EEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChH
Q psy6451 155 VHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPF 194 (332)
Q Consensus 155 V~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~ 194 (332)
..|+.|+|+.|+.....|+. .++.|-.+|+.+.|.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~~~ 36 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-----NGIEYQFIDIGEDGP 36 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----cCCceEEEecCCChh
Confidence 46889999999998876665 356777788776543
No 394
>PRK13599 putative peroxiredoxin; Provisional
Probab=70.76 E-value=7.9 Score=34.84 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=32.9
Q ss_pred CCc-EEEEEccCCChhhhhhHHHHHHHHHhhh--hceeeecccC
Q psy6451 80 SPN-MVVHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVE 120 (332)
Q Consensus 80 ~~~-vvVhFy~p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~~ 120 (332)
+++ ||+.|.+.||+.|..-.+.|.+++..|. ++.++.+.++
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D 71 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVD 71 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 445 5789999999999999999999999884 5666666544
No 395
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=70.47 E-value=17 Score=29.03 Aligned_cols=34 Identities=9% Similarity=0.242 Sum_probs=24.5
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCC
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA 192 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~ 192 (332)
+..|+.|+|+.|+.....|+.. ++.|-.+|+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCC
Confidence 3467789999999988666542 566667777655
No 396
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=70.21 E-value=20 Score=25.43 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=33.5
Q ss_pred EEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECc----CChHHHHhCCcccCcEEE
Q psy6451 155 VHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVE----RAPFLTERLRIKVIPTLT 208 (332)
Q Consensus 155 V~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~----~~~~l~~~~~I~~~PTl~ 208 (332)
..|+.++|+.|+.+.-.++.+.- ......++.. ..+.+....+...+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi---~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL---ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC---CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 46789999999987755554422 2344455532 235666677778899995
No 397
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=70.11 E-value=21 Score=26.02 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=32.2
Q ss_pred EEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCC----hHHHHhCCcccCcEEEEEeCC
Q psy6451 155 VHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA----PFLTERLRIKVIPTLTLVKDS 213 (332)
Q Consensus 155 V~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~----~~l~~~~~I~~~PTl~~~~~G 213 (332)
..++.++|+.|..+.-.|.++ ++.|-.+++... +.+...-+-..+|+++.-.+|
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~ 60 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTG 60 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCC
Confidence 456678999999977655544 344444554432 233334466789998542234
No 398
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=69.12 E-value=12 Score=34.63 Aligned_cols=60 Identities=12% Similarity=0.025 Sum_probs=41.0
Q ss_pred HhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEe
Q psy6451 146 LCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVK 211 (332)
Q Consensus 146 ~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~ 211 (332)
....+++.|++..+-|||.|...+=.|-..-.+|..+.+.....+. .-.-..+||+++..
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~------~d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDP------YDNYPNTPTLIFNN 113 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCc------ccCCCCCCeEEEec
Confidence 3467899999999999999999887776666677775333222221 01125789888753
No 399
>PRK12559 transcriptional regulator Spx; Provisional
Probab=68.90 E-value=15 Score=30.41 Aligned_cols=35 Identities=11% Similarity=0.289 Sum_probs=24.1
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCCh
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP 193 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~ 193 (332)
|..|+.|+|+.|+.....|+.- ++.|-.+|+.+.|
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeCCc
Confidence 5678899999999977555432 4666666665543
No 400
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=68.25 E-value=7.6 Score=34.42 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=30.8
Q ss_pred cEEEEEccCCChhhhhhHHHHHHHHHhhh--hceeeecccC
Q psy6451 82 NMVVHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVE 120 (332)
Q Consensus 82 ~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~~ 120 (332)
.+|+.|.+.||+.|..-.+.|.+++..|. ++.++-+..+
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D 68 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD 68 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 35668999999999999999999999885 4566655444
No 401
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=67.54 E-value=8.3 Score=35.91 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=32.7
Q ss_pred CCCcEEEEEc-cCCChhhhhhHHHHHHHHHhhh--hceeeecccC
Q psy6451 79 KSPNMVVHFY-KDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVE 120 (332)
Q Consensus 79 ~~~~vvVhFy-~p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~~ 120 (332)
+++++|+.|| +.||+.|..-.+.|.++...|. ++.++.+..+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~D 141 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVD 141 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 3567888888 7999999999999999988884 4555555443
No 402
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=67.23 E-value=9.6 Score=31.46 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=25.3
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCCh
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP 193 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~ 193 (332)
|..|+.|+|+.|+.....|+.. ++.|-.+|+.+.|
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccCCh
Confidence 4578899999999987555432 5667777776654
No 403
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=66.73 E-value=10 Score=32.48 Aligned_cols=37 Identities=8% Similarity=0.083 Sum_probs=30.7
Q ss_pred EEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEEC
Q psy6451 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNV 189 (332)
Q Consensus 153 VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~ 189 (332)
.|..||..-||.|-...+.|.++.+.++++.+...-.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~ 37 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPF 37 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence 3778999999999999999999999997765554433
No 404
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=66.53 E-value=24 Score=24.89 Aligned_cols=51 Identities=14% Similarity=0.110 Sum_probs=31.6
Q ss_pred EEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECc-CChHHHHhCCcccCcEEE
Q psy6451 155 VHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVE-RAPFLTERLRIKVIPTLT 208 (332)
Q Consensus 155 V~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~-~~~~l~~~~~I~~~PTl~ 208 (332)
..|+.++|+.|..+.-.++...-. .....++.. ..+.+.+..+...+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS---VEIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc---cEEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 457789999999987665443322 233334433 234555556778899774
No 405
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=65.97 E-value=14 Score=30.23 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=29.8
Q ss_pred CCCcEEEEEcc-------CCChhhhhhHHHHHHHHHhhh-hceeeecccC
Q psy6451 79 KSPNMVVHFYK-------DGSVNCKILDEHMKTLCKKHL-ETRFIKLNVE 120 (332)
Q Consensus 79 ~~~~vvVhFy~-------p~~~~Ck~~~~~l~~LA~~~~-~~~f~kvd~~ 120 (332)
++.++.|-|+. +||+-|....|.+...-...+ +..|+.+.+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG 67 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVG 67 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE--
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcC
Confidence 45678888884 599999999999988777655 4666666543
No 406
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=64.75 E-value=5.9 Score=30.97 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=20.0
Q ss_pred cEEEEEccCCChhhhhhHHHHHHHH
Q psy6451 82 NMVVHFYKDGSVNCKILDEHMKTLC 106 (332)
Q Consensus 82 ~vvVhFy~p~~~~Ck~~~~~l~~LA 106 (332)
.-|+-|..|||++|..+...|..+.
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~ 32 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLG 32 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC
Confidence 3477799999999999888776553
No 407
>PRK13190 putative peroxiredoxin; Provisional
Probab=63.92 E-value=11 Score=33.44 Aligned_cols=41 Identities=10% Similarity=0.065 Sum_probs=30.6
Q ss_pred CCcEEE-EEccCCChhhhhhHHHHHHHHHhhh--hceeeecccC
Q psy6451 80 SPNMVV-HFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVE 120 (332)
Q Consensus 80 ~~~vvV-hFy~p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~~ 120 (332)
++++|+ .|.+.||+.|..-.+.|.++...|. ++.++.+..+
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D 70 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD 70 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 556555 6789999999999899988888885 3555555443
No 408
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=63.92 E-value=49 Score=23.82 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=37.6
Q ss_pred EEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcC-ChHHHHhCCcccCcEEEEEeCCeee
Q psy6451 156 HFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVER-APFLTERLRIKVIPTLTLVKDSVTK 216 (332)
Q Consensus 156 ~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~-~~~l~~~~~I~~~PTl~~~~~G~~v 216 (332)
.++.++|+.|..+.-.++...- ...+..++... .+.+....+-..+|++. .+|..+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l 57 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL 57 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE
T ss_pred CCCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccccceEEE--ECCEEE
Confidence 3678999999997744443221 24556666544 45677777888999997 567644
No 409
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=63.48 E-value=35 Score=25.68 Aligned_cols=53 Identities=9% Similarity=0.130 Sum_probs=33.5
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCC-hHHHHhCCcccCcEEEE
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA-PFLTERLRIKVIPTLTL 209 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~-~~l~~~~~I~~~PTl~~ 209 (332)
+..|+.+.|+.|..+.-.+.... ....++.++.... +.+....+...+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~g---l~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKN---IPHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcC---CCCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 55567888999998775544432 2245555654433 33555667788999873
No 410
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.43 E-value=1.3e+02 Score=29.52 Aligned_cols=134 Identities=10% Similarity=0.100 Sum_probs=88.8
Q ss_pred cEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeec--ccCCCCcccccCCCCc-------------------ccc----
Q psy6451 82 NMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKL--NVERAPFLTGQQGHGE-------------------YEE---- 136 (332)
Q Consensus 82 ~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kv--d~~k~pfl~~k~g~g~-------------------~~e---- 136 (332)
++.++-........+.|...+..+|..-..+.+-.. ...+..|.....|+.. +..
T Consensus 20 ~i~l~asldds~~s~~~~~ll~eia~~S~kis~~~~~~~~RkpSF~i~r~g~~~gv~FAglPlGHEftSlVLaLlqv~G~ 99 (520)
T COG3634 20 PIELVASLDDSEKSKEIKELLDEIASLSDKISLEEDSDLVRKPSFSINRPGEDQGVRFAGLPLGHEFTSLVLALLQVGGH 99 (520)
T ss_pred CeEEEEecCcccccHHHHHHHHHHHhhccceeeeecCccccCCceeecCCCcccceEEecCcccchHHHHHHHHHHhcCC
Confidence 344445556677788888888888887655544333 2223345555544321 000
Q ss_pred -cCChhHHHHHhc--cCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEeCC
Q psy6451 137 -IPDEKKFFDLCK--KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDS 213 (332)
Q Consensus 137 -i~~e~~~~~~~~--~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G 213 (332)
-.-+.++.+.++ .+..-+=-|++-.|..|-.+-+.|+.++--.|.++-.-||.....+-.+.-+|.++||++ .||
T Consensus 100 ppk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvf--lnG 177 (520)
T COG3634 100 PPKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVF--LNG 177 (520)
T ss_pred CCchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEE--Ecc
Confidence 012344455543 345556667888999999999999999999999999999987776667778999999975 466
Q ss_pred eeee
Q psy6451 214 VTKD 217 (332)
Q Consensus 214 ~~v~ 217 (332)
+...
T Consensus 178 e~fg 181 (520)
T COG3634 178 EEFG 181 (520)
T ss_pred hhhc
Confidence 5443
No 411
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=63.26 E-value=55 Score=28.14 Aligned_cols=113 Identities=18% Similarity=0.158 Sum_probs=61.3
Q ss_pred CCCcEEEEEccCCC-hhhhhhHHHHHHHHHhhhh------ceeeecccCCCCcccccCCCCcccccCChhHHHHHhcc--
Q psy6451 79 KSPNMVVHFYKDGS-VNCKILDEHMKTLCKKHLE------TRFIKLNVERAPFLTGQQGHGEYEEIPDEKKFFDLCKK-- 149 (332)
Q Consensus 79 ~~~~vvVhFy~p~~-~~Ck~~~~~l~~LA~~~~~------~~f~kvd~~k~pfl~~k~g~g~~~ei~~e~~~~~~~~~-- 149 (332)
+++++||.|.-..| ..|-.+..+|.++...... +.|+++|.+. .+.+.+.+..+.
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~----------------DTp~~L~~Y~~~~~ 114 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPER----------------DTPEVLKKYAKKFG 114 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTT----------------C-HHHHHHHHHCHT
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCC----------------CCHHHHHHHHHhcC
Confidence 47888888888888 5799998888888876542 3455665442 112222222222
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEE-eCCeeeeeEec
Q psy6451 150 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLV-KDSVTKDYIVG 221 (332)
Q Consensus 150 ~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~-~~G~~v~~~~G 221 (332)
..+.-..+ -.+.++.+++.+ ++.+.++..... ...+.+..-..+.++ ++|+.+..+.+
T Consensus 115 ~~~~~ltg----------~~~~i~~l~~~~-~v~~~~~~~~~~---~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 115 PDFIGLTG----------SREEIEELAKQF-GVYYEKVPEDKP---EGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp TTCEEEEE----------EHHHHHHHHHHC-THCEEEEESSST---TSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred CCcceeEe----------CHHHHHHHHHHH-HhhhcccccccC---CCCceEecccEEEEEcCCCcEEEEEcc
Confidence 12222221 123345566554 355555554332 123445556666666 58888877643
No 412
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=62.15 E-value=14 Score=33.41 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=30.7
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEE
Q psy6451 151 PNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLN 188 (332)
Q Consensus 151 ~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd 188 (332)
...++.|+...|++|+.+.|.+.+.....+.+++...+
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~ 122 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLRE 122 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEEE
Confidence 77899999999999999999998877666666555444
No 413
>KOG2640|consensus
Probab=61.69 E-value=2.2 Score=40.44 Aligned_cols=126 Identities=10% Similarity=0.028 Sum_probs=79.2
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCcccccCChhHHHHHhccCCcEEEEEe
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYEEIPDEKKFFDLCKKSPNMVVHFY 158 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ei~~e~~~~~~~~~~~~VvV~Fy 158 (332)
+..+|-..||+.||+..+..++.+.-+-..|+.+.-..+ .+....-...+.......=.+.+-
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~v-----------------ee~~~lpsv~s~~~~~~~ps~~~~ 137 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAV-----------------EESQALPSVFSSYGIHSEPSNLML 137 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhccccccccH-----------------HHHhhcccchhccccccCCcceee
Confidence 367899999999999999988888777777763322111 111111111111111111234566
Q ss_pred cCCChhhHHHHHHHHHHHHHcCCce--EEEEECcCChH--HHHhCCcccCcEEEEEeCCeeeeeEec
Q psy6451 159 KDGSVNCKILDEHMKTLCKKHLETR--FIKLNVERAPF--LTERLRIKVIPTLTLVKDSVTKDYIVG 221 (332)
Q Consensus 159 a~wc~~Ck~l~~~l~~La~~~~~v~--f~kVd~~~~~~--l~~~~~I~~~PTl~~~~~G~~v~~~~G 221 (332)
.+.|+..-...+.+..|+.-|+++. ++-+++..+.. .--+|...+-||++.-.+|..+.+...
T Consensus 138 n~t~~~~~~~~r~l~sLv~fy~~i~~~~v~ie~~d~~~~~~~~ry~~~~~~t~l~~p~~~~~~~~r~ 204 (319)
T KOG2640|consen 138 NQTCPASYRGERDLASLVNFYTEITPMSVLIEILDCTSCLEPVRYVPEGGPTILLAPDGNLFTWARP 204 (319)
T ss_pred ccccchhhcccccHHHHHHHHHhhccchhcccccCcccceeeeEeccccCcccccCcCCCcchhccc
Confidence 7888888888888888888777632 24444433322 234788899999999889988877654
No 414
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.67 E-value=35 Score=29.42 Aligned_cols=84 Identities=14% Similarity=0.174 Sum_probs=47.5
Q ss_pred hhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHh---h-hhceeeecccCCCCcccccCCCCcccccCChhHHHHHh
Q psy6451 72 KFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKK---H-LETRFIKLNVERAPFLTGQQGHGEYEEIPDEKKFFDLC 147 (332)
Q Consensus 72 ~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~---~-~~~~f~kvd~~k~pfl~~k~g~g~~~ei~~e~~~~~~~ 147 (332)
+...+..+.+.+++.|-++.|..|..|-..+..--+. + ++.-++.++...+....-..|.. .+.-+.+++.+..
T Consensus 34 d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~k--ee~~s~~ELa~kf 111 (182)
T COG2143 34 DNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDK--EEKMSTEELAQKF 111 (182)
T ss_pred HHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCce--eeeecHHHHHHHh
Confidence 3344456678899999999999999988765433322 1 23455666666544333333322 3444444444443
Q ss_pred -ccCCcEEEEE
Q psy6451 148 -KKSPNMVVHF 157 (332)
Q Consensus 148 -~~~~~VvV~F 157 (332)
-.+.|.+|.|
T Consensus 112 ~vrstPtfvFf 122 (182)
T COG2143 112 AVRSTPTFVFF 122 (182)
T ss_pred ccccCceEEEE
Confidence 2344555544
No 415
>PRK10329 glutaredoxin-like protein; Provisional
Probab=58.78 E-value=14 Score=27.78 Aligned_cols=33 Identities=21% Similarity=0.458 Sum_probs=23.9
Q ss_pred EEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCC
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVER 121 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k 121 (332)
+.-|..++|+.|..+...|.+ .++.|-.+++..
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~ 35 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDR 35 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCC
Confidence 567888999999998888854 345565655553
No 416
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=58.05 E-value=62 Score=22.60 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=34.2
Q ss_pred EEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECc----CChHHHHhCCcccCcEEEEEeCCee
Q psy6451 155 VHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVE----RAPFLTERLRIKVIPTLTLVKDSVT 215 (332)
Q Consensus 155 V~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~----~~~~l~~~~~I~~~PTl~~~~~G~~ 215 (332)
..|+.++|+.|..+.-.++...- ......++.. ..+.+....+-..+|++.. +|..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 61 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGI---PYEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRV 61 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC---CcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEE
Confidence 35778999999988765554422 2344455532 2344555566778999864 4543
No 417
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=57.95 E-value=13 Score=31.78 Aligned_cols=30 Identities=10% Similarity=0.200 Sum_probs=26.8
Q ss_pred EEEEccCCChhhhhhHHHHHHHHHhhhhce
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTLCKKHLETR 113 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~ 113 (332)
|..||.+.|++|-...+.|.++...++++.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~ 31 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVE 31 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCc
Confidence 678999999999999999999999996543
No 418
>PRK13189 peroxiredoxin; Provisional
Probab=56.68 E-value=20 Score=32.35 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=30.6
Q ss_pred CCcE-EEEEccCCChhhhhhHHHHHHHHHhhh--hceeeecccC
Q psy6451 80 SPNM-VVHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVE 120 (332)
Q Consensus 80 ~~~v-vVhFy~p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~~ 120 (332)
++++ |+.|.+.||+.|..-.+.|..++..|. ++.++.+..+
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D 78 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID 78 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 4554 456779999999999999999998884 4555555433
No 419
>PRK13191 putative peroxiredoxin; Provisional
Probab=56.47 E-value=22 Score=31.88 Aligned_cols=41 Identities=17% Similarity=0.107 Sum_probs=31.8
Q ss_pred CCcEE-EEEccCCChhhhhhHHHHHHHHHhhh--hceeeecccC
Q psy6451 80 SPNMV-VHFYKDGSVNCKILDEHMKTLCKKHL--ETRFIKLNVE 120 (332)
Q Consensus 80 ~~~vv-VhFy~p~~~~Ck~~~~~l~~LA~~~~--~~~f~kvd~~ 120 (332)
++++| +.|.+.||+.|..-.+.|.+++..|. ++.++.+..+
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~D 76 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVD 76 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 45555 58899999999999999999999884 4566655544
No 420
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=56.40 E-value=28 Score=29.28 Aligned_cols=74 Identities=19% Similarity=0.152 Sum_probs=46.3
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcc----cCcEEEEEeCCeeeeeEecccCcc
Q psy6451 151 PNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIK----VIPTLTLVKDSVTKDYIVGFTELG 226 (332)
Q Consensus 151 ~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~----~~PTl~~~~~G~~v~~~~G~~~~~ 226 (332)
..-++.||.|.|+=|..+..+++. .++.+-.+..+.-..+-++|+|. +-=| ...+|..+.-.+.
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT--~VI~Gy~vEGHVP----- 92 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDDFLALKRRLGIPYEMQSCHT--AVINGYYVEGHVP----- 92 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCcHHHHHHhcCCChhhccccE--EEEcCEEEeccCC-----
Confidence 345788999999999999988872 34455555555555566677763 3333 3446766654332
Q ss_pred hhhHhHHHHHHHHHHH
Q psy6451 227 NCADFSTEMLEWRIAQ 242 (332)
Q Consensus 227 ~~~~f~~~~Le~~L~~ 242 (332)
.+.+.++|..
T Consensus 93 ------a~aI~~ll~~ 102 (149)
T COG3019 93 ------AEAIARLLAE 102 (149)
T ss_pred ------HHHHHHHHhC
Confidence 3456666654
No 421
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=56.27 E-value=16 Score=32.53 Aligned_cols=25 Identities=8% Similarity=0.056 Sum_probs=22.2
Q ss_pred EEEEccCCChhhhhhHHHHHHHHHh
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTLCKK 108 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~LA~~ 108 (332)
|-..|-|-|+.|-=..|.++.+...
T Consensus 4 lhYifDPmCgWCyGa~Pll~~l~~~ 28 (212)
T COG3531 4 LHYIFDPMCGWCYGAAPLLEALSAQ 28 (212)
T ss_pred eEEecCcchhhhhCccHHHHHHHhc
Confidence 5567899999999999999998876
No 422
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=55.28 E-value=76 Score=25.43 Aligned_cols=41 Identities=24% Similarity=0.375 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEeC
Q psy6451 168 LDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212 (332)
Q Consensus 168 l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~ 212 (332)
....+.+|..+.+.. .++.-.|.+-++|+|..+||+++-++
T Consensus 40 t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 40 TAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 333444444443333 44455688899999999999999888
No 423
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=54.73 E-value=9.5 Score=27.54 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=16.8
Q ss_pred EEEccCCChhhhhhHHHHHH
Q psy6451 85 VHFYKDGSVNCKILDEHMKT 104 (332)
Q Consensus 85 VhFy~p~~~~Ck~~~~~l~~ 104 (332)
.-|..++|+.|+.+...|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~ 21 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE 21 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 45778999999999888865
No 424
>KOG4752|consensus
Probab=54.31 E-value=26 Score=20.03 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6451 36 EKLREDHLKKLKAKAKRN 53 (332)
Q Consensus 36 ~~~r~~Rl~el~~~~~~~ 53 (332)
++||.+||..|+....+.
T Consensus 3 ~kwrkkrmrrlkrkrr~~ 20 (26)
T KOG4752|consen 3 AKWRKKRMRRLKRKRRKM 20 (26)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 579999999998876553
No 425
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=54.04 E-value=38 Score=27.98 Aligned_cols=35 Identities=11% Similarity=0.320 Sum_probs=23.7
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCCh
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP 193 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~ 193 (332)
+..|+.|+|+.|+.....|+. .++.|-.+|+.+.|
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-----~~i~~~~~d~~~~~ 36 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA-----HQLSYKEQNLGKEP 36 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-----cCCCeEEEECCCCC
Confidence 446778999999997644432 25667777776553
No 426
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=53.31 E-value=24 Score=29.35 Aligned_cols=66 Identities=9% Similarity=0.075 Sum_probs=49.8
Q ss_pred hhhhhhhcCCCcEEEEEccCC---ChhhhhhHHHHHHHHHhhh-h-ceeeecccCCCCcccccCCCCccccc
Q psy6451 71 KKFFDLCKKSPNMVVHFYKDG---SVNCKILDEHMKTLCKKHL-E-TRFIKLNVERAPFLTGQQGHGEYEEI 137 (332)
Q Consensus 71 ~~f~~~~~~~~~vvVhFy~p~---~~~Ck~~~~~l~~LA~~~~-~-~~f~kvd~~k~pfl~~k~g~g~~~ei 137 (332)
.++.+.+...... |-|++.. ++.+.-+.=.|.+||..|. . ++|+++|.+..+-+..+.|...++++
T Consensus 25 ~~~~~~~~~~~~~-vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTL 95 (132)
T PRK11509 25 SRLDDWLTQAPDG-VVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPAT 95 (132)
T ss_pred ccHHHHHhCCCcE-EEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEE
Confidence 6677777655544 4444444 5567778889999999998 3 78999999999999998887776655
No 427
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=52.94 E-value=36 Score=28.25 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=22.7
Q ss_pred ECcCChHHHHhCCcccCcEEEEEeCCe
Q psy6451 188 NVERAPFLTERLRIKVIPTLTLVKDSV 214 (332)
Q Consensus 188 d~~~~~~l~~~~~I~~~PTl~~~~~G~ 214 (332)
.+.-+|.+-++|+|..+|++++.+++.
T Consensus 56 ~v~IdP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 56 GVQIDPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred cEEEChHHHhhcCceEcCEEEEECCCC
Confidence 344468889999999999999999874
No 428
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=52.28 E-value=20 Score=27.81 Aligned_cols=17 Identities=6% Similarity=-0.261 Sum_probs=14.0
Q ss_pred cCCChhhhhhHHHHHHH
Q psy6451 89 KDGSVNCKILDEHMKTL 105 (332)
Q Consensus 89 ~p~~~~Ck~~~~~l~~L 105 (332)
.|||++|+.+-..|..+
T Consensus 24 ~~~Cp~C~~ak~lL~~~ 40 (97)
T TIGR00365 24 FPQCGFSARAVQILKAC 40 (97)
T ss_pred CCCCchHHHHHHHHHHc
Confidence 39999999988888654
No 429
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=52.18 E-value=9.1 Score=27.48 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=18.4
Q ss_pred EEEEccCCChhhhhhHHHHHHH
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTL 105 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~L 105 (332)
|+-|..++|+.|..+-..|..+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~ 23 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK 23 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC
Confidence 5678889999999988888664
No 430
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=51.90 E-value=1.9e+02 Score=26.45 Aligned_cols=90 Identities=10% Similarity=0.028 Sum_probs=52.2
Q ss_pred CcEEEEEecCC------ChhhHHHHHHHHHHHHHcC-CceEEEEECcCChHHHHh----CCccc----------------
Q psy6451 151 PNMVVHFYKDG------SVNCKILDEHMKTLCKKHL-ETRFIKLNVERAPFLTER----LRIKV---------------- 203 (332)
Q Consensus 151 ~~VvV~Fya~w------c~~Ck~l~~~l~~La~~~~-~v~f~kVd~~~~~~l~~~----~~I~~---------------- 203 (332)
.+|-|.+|.+. -..=+.+...|++.+..-+ .+++-.||.+..|..+++ +||..
T Consensus 25 ~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~ 104 (271)
T PF09822_consen 25 EPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQIEIVDNGKASIVTV 104 (271)
T ss_pred CCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccceeecccccccceee
Confidence 47766666555 3344455555666666656 499999999888877666 88877
Q ss_pred CcEEEEEeCCeeeeeEecccC--cchhhHhHHHHHHHHHH
Q psy6451 204 IPTLTLVKDSVTKDYIVGFTE--LGNCADFSTEMLEWRIA 241 (332)
Q Consensus 204 ~PTl~~~~~G~~v~~~~G~~~--~~~~~~f~~~~Le~~L~ 241 (332)
++.+++ ..|.....+..+.. ...++.-++..|..+..
T Consensus 105 ~~~~~v-~~~~~~~~i~~~~~~~~~~~E~~lt~aI~~v~~ 143 (271)
T PF09822_consen 105 YGGIVV-EYGDREEVIPFLDSMSEFNLEYELTSAIRRVTS 143 (271)
T ss_pred cCeEEE-EECCeEEEeecccccccccHHHHHHHHHHHHhc
Confidence 444444 33333333333322 33344555566655553
No 431
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=51.35 E-value=15 Score=26.39 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=18.5
Q ss_pred EEEEccCCChhhhhhHHHHHHH
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTL 105 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~L 105 (332)
|+-|..++|+.|......|..+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~ 24 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN 24 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 6778999999999998888653
No 432
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=50.46 E-value=8.9 Score=28.05 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=18.1
Q ss_pred EEEccCCChhhhhhHHHHHHHH
Q psy6451 85 VHFYKDGSVNCKILDEHMKTLC 106 (332)
Q Consensus 85 VhFy~p~~~~Ck~~~~~l~~LA 106 (332)
+-|..|+|+.|..+...|.+..
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~~ 23 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSKG 23 (79)
T ss_pred EEEecCCChhHHHHHHHHHHcC
Confidence 4577899999999999887643
No 433
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=50.04 E-value=10 Score=28.51 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=22.2
Q ss_pred cCcEEEEEe-CCeeeeeEecccCcchhhHhHHHHHHHHHHHcC
Q psy6451 203 VIPTLTLVK-DSVTKDYIVGFTELGNCADFSTEMLEWRIAQAG 244 (332)
Q Consensus 203 ~~PTl~~~~-~G~~v~~~~G~~~~~~~~~f~~~~Le~~L~~~g 244 (332)
.-|++++|. +|+.+.++ .+..|.++.++.+|.+.|
T Consensus 41 ~~P~L~l~d~~g~~~E~i-------~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERI-------NIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEE-------E-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEE-------EcccCCHHHHHHHHHHhC
Confidence 358899986 88888776 347888888888887654
No 434
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=50.02 E-value=5.7 Score=29.80 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=17.5
Q ss_pred EEEEccCCChhhhhhHHHHHH
Q psy6451 84 VVHFYKDGSVNCKILDEHMKT 104 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~ 104 (332)
++-|-.|+|+.|+..-..|.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~ 23 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR 23 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH
Confidence 566889999999998888763
No 435
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=49.64 E-value=18 Score=21.72 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=14.4
Q ss_pred ChHHHHHHHHHHHHHHHH
Q psy6451 31 DLDSIEKLREDHLKKLKA 48 (332)
Q Consensus 31 d~~~l~~~r~~Rl~el~~ 48 (332)
++++.+++|++||++...
T Consensus 9 ed~ea~r~reeRla~y~a 26 (28)
T PF10587_consen 9 EDEEAERIREERLAAYAA 26 (28)
T ss_pred ccHHHHHHHHHHHHHHHc
Confidence 456889999999988653
No 436
>PRK04239 hypothetical protein; Provisional
Probab=49.12 E-value=15 Score=29.67 Aligned_cols=18 Identities=28% Similarity=0.610 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6451 34 SIEKLREDHLKKLKAKAK 51 (332)
Q Consensus 34 ~l~~~r~~Rl~el~~~~~ 51 (332)
+|+.+|++||++|+.+..
T Consensus 2 ELe~IR~~rl~eLq~q~~ 19 (110)
T PRK04239 2 ELEEIRRRKLEELQKQAQ 19 (110)
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 789999999999987543
No 437
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=47.86 E-value=44 Score=27.46 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=46.8
Q ss_pred ceEecCCchhhhhhhcCCCcEEEEEccCC---Chhh-hhhHHHHHHHHHhhhh--ceeeecccCCCCcccccC
Q psy6451 63 EYEEIPDEKKFFDLCKKSPNMVVHFYKDG---SVNC-KILDEHMKTLCKKHLE--TRFIKLNVERAPFLTGQQ 129 (332)
Q Consensus 63 ~~~ev~~e~~f~~~~~~~~~vvVhFy~p~---~~~C-k~~~~~l~~LA~~~~~--~~f~kvd~~k~pfl~~k~ 129 (332)
.+.+|+++..|.+.+..+..+++-|.-.. ...+ ..+...|.++|..|.+ +.|+-+|+.....+....
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~f 75 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEAL 75 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHc
Confidence 57899988888889977777888775421 1222 4567889999999965 478888877654333333
No 438
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=47.39 E-value=21 Score=30.58 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=19.7
Q ss_pred HHHHhCCcccCcEEEEEeCCeeeeeEecccCc
Q psy6451 194 FLTERLRIKVIPTLTLVKDSVTKDYIVGFTEL 225 (332)
Q Consensus 194 ~l~~~~~I~~~PTl~~~~~G~~v~~~~G~~~~ 225 (332)
..+.++||.++||+++ +|+ .+.|...+
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~---~~~G~~~l 184 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGE---MFWGQDRL 184 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCe---eecccccH
Confidence 3566899999999988 775 44565544
No 439
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=46.80 E-value=48 Score=26.49 Aligned_cols=33 Identities=0% Similarity=-0.135 Sum_probs=23.7
Q ss_pred EEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCC
Q psy6451 155 VHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA 192 (332)
Q Consensus 155 V~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~ 192 (332)
..|+.|.|..|+.....|+.- ++.|.-+|+.+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccCC
Confidence 468899999999987665542 566666776554
No 440
>PHA03075 glutaredoxin-like protein; Provisional
Probab=46.03 E-value=71 Score=26.06 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=27.4
Q ss_pred CcEEEEEccCCChhhhhhHHHHHHHHHhhhh
Q psy6451 81 PNMVVHFYKDGSVNCKILDEHMKTLCKKHLE 111 (332)
Q Consensus 81 ~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~ 111 (332)
+.+++-|-.|-|+.|......|..|...|.-
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~i 32 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDI 32 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccE
Confidence 3578999999999999999999999998853
No 441
>KOG3431|consensus
Probab=45.27 E-value=17 Score=29.73 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy6451 32 LDSIEKLREDHLKKLKAKA 50 (332)
Q Consensus 32 ~~~l~~~r~~Rl~el~~~~ 50 (332)
+.+|+.+|++||.+|+...
T Consensus 2 D~eL~AiR~qRlaqlqa~~ 20 (129)
T KOG3431|consen 2 DPELQAIRAQRLAQLQANS 20 (129)
T ss_pred chHHHHHHHHHHHHhhhhc
Confidence 4689999999999998865
No 442
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=42.73 E-value=1.3e+02 Score=21.68 Aligned_cols=56 Identities=9% Similarity=0.070 Sum_probs=35.7
Q ss_pred EEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECc----CChHHHHhCCcccCcEEEEEeCCee
Q psy6451 155 VHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVE----RAPFLTERLRIKVIPTLTLVKDSVT 215 (332)
Q Consensus 155 V~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~----~~~~l~~~~~I~~~PTl~~~~~G~~ 215 (332)
..||.+.|+.|..+.-.++++.- ...+..++.. ..+++.+--+-..+|++. .+|..
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~ 61 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL---RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNI 61 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC---CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 46788899999887644443322 2455556542 345566667778899985 46654
No 443
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=42.65 E-value=1.9e+02 Score=24.81 Aligned_cols=123 Identities=14% Similarity=0.067 Sum_probs=57.6
Q ss_pred CCCcEEEEEccCCChhhhhhHHHHHHHHH---hhhhceeeecccCCCCcccccCCCCcccccCChhHHHHHhccCCcEEE
Q psy6451 79 KSPNMVVHFYKDGSVNCKILDEHMKTLCK---KHLETRFIKLNVERAPFLTGQQGHGEYEEIPDEKKFFDLCKKSPNMVV 155 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~---~~~~~~f~kvd~~k~pfl~~k~g~g~~~ei~~e~~~~~~~~~~~~VvV 155 (332)
+++.+||---|+.|+..- .|+.|.. +|.+-.|.-+......|.-+ +-.+++++...+..+--|-.
T Consensus 24 ~GkVlLIVNtASkCGfTp----QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~Q--------EPg~~eEI~~fC~~~YgVtF 91 (162)
T COG0386 24 KGKVLLIVNTASKCGFTP----QYEGLEALYKKYKDKGFEVLGFPCNQFGGQ--------EPGSDEEIAKFCQLNYGVTF 91 (162)
T ss_pred CCcEEEEEEcccccCCcH----hHHHHHHHHHHHhhCCcEEEeccccccccC--------CCCCHHHHHHHHHhccCcee
Confidence 467889999999998665 4444444 44433333332222222222 23344455555443322211
Q ss_pred EEecCCChhhHHHHHHHHHHHHHcCCc---eEEEEECcCChHHHHhCCcccCcEEEEEeCCeeeeeEecccCcchh
Q psy6451 156 HFYKDGSVNCKILDEHMKTLCKKHLET---RFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELGNC 228 (332)
Q Consensus 156 ~Fya~wc~~Ck~l~~~l~~La~~~~~v---~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G~~~~~~~ 228 (332)
-.++.---.-....|.+.-|....++. ..++ +++--+++=++|+++.|+........+
T Consensus 92 p~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~Ik---------------WNFtKFLvdr~G~VV~Rf~p~t~P~d~ 152 (162)
T COG0386 92 PMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIK---------------WNFTKFLVDRDGNVVKRFSPKTKPEDI 152 (162)
T ss_pred eeeeEEeecCCCCCcHHHHHHhcCCCCccCCccc---------------eeeEEEEEcCCCcEEEeeCCCCChhhH
Confidence 111111111112334444444433321 1111 223335566899999999876555444
No 444
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=41.78 E-value=62 Score=25.92 Aligned_cols=34 Identities=9% Similarity=0.112 Sum_probs=22.8
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCC
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA 192 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~ 192 (332)
+..|+.|.|..|+.....|+.- ++.|--+|+.+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~~~ 35 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-----GHEVEVRDLLTE 35 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEeehhcC
Confidence 4568899999999876544432 456666665554
No 445
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=41.69 E-value=30 Score=29.61 Aligned_cols=27 Identities=11% Similarity=0.023 Sum_probs=24.9
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcC
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHL 180 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~ 180 (332)
|..|+-+.||.|-...+.|.+++..|+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 678899999999999999999999984
No 446
>PRK10638 glutaredoxin 3; Provisional
Probab=41.39 E-value=28 Score=25.82 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=18.2
Q ss_pred EEEEccCCChhhhhhHHHHHHH
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTL 105 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~L 105 (332)
++-|..++|+.|+.+...|...
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~ 25 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK 25 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 5567789999999988888654
No 447
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.02 E-value=37 Score=30.89 Aligned_cols=28 Identities=11% Similarity=0.029 Sum_probs=22.8
Q ss_pred EEEEccCCChhhhhhHHHHHHHHHhhhh
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTLCKKHLE 111 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~LA~~~~~ 111 (332)
+--|.-+-|+.|-+..+.|.++-..++.
T Consensus 8 I~v~sD~vCPwC~ig~~rL~ka~~~~~~ 35 (225)
T COG2761 8 IDVFSDVVCPWCYIGKRRLEKALAEYPQ 35 (225)
T ss_pred EEEEeCCcCchhhcCHHHHHHHHHhcCc
Confidence 4456667799999999999998888873
No 448
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=40.91 E-value=2.3e+02 Score=28.25 Aligned_cols=112 Identities=13% Similarity=0.142 Sum_probs=75.8
Q ss_pred CcEEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCcccccCChhHHHHHhccCCcEEEEEecC
Q psy6451 81 PNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYEEIPDEKKFFDLCKKSPNMVVHFYKD 160 (332)
Q Consensus 81 ~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ei~~e~~~~~~~~~~~~VvV~Fya~ 160 (332)
..-+|.|.+-+-+....+.|.+.++-..||+++++-..... ++.+-... .-...+.|+|-|
T Consensus 48 ~~p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~----------------Tg~e~a~~---~~~~~v~h~YlP 108 (419)
T COG1519 48 EGPLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTP----------------TGAERAAA---LFGDSVIHQYLP 108 (419)
T ss_pred CCCeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCc----------------cHHHHHHH---HcCCCeEEEecC
Confidence 34688999999999999999999999999998776543221 11111111 223338999999
Q ss_pred CChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEeCCeeeee
Q psy6451 161 GSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDY 218 (332)
Q Consensus 161 wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~~G~~v~~ 218 (332)
---+|.. .+.-.....-..+-+..+--|.+....+..++|++++ ||+.-.+
T Consensus 109 ~D~~~~v-----~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~Lv--NaRLS~r 159 (419)
T COG1519 109 LDLPIAV-----RRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLV--NARLSDR 159 (419)
T ss_pred cCchHHH-----HHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEE--eeeechh
Confidence 8766553 4444444444455566777788888888899998765 5554443
No 449
>PRK10824 glutaredoxin-4; Provisional
Probab=40.32 E-value=28 Score=28.23 Aligned_cols=17 Identities=0% Similarity=-0.232 Sum_probs=14.3
Q ss_pred CCChhhhhhHHHHHHHH
Q psy6451 90 DGSVNCKILDEHMKTLC 106 (332)
Q Consensus 90 p~~~~Ck~~~~~l~~LA 106 (332)
|+|+.|..+-..|..+.
T Consensus 28 p~Cpyc~~ak~lL~~~~ 44 (115)
T PRK10824 28 PSCGFSAQAVQALSACG 44 (115)
T ss_pred CCCchHHHHHHHHHHcC
Confidence 79999999888886664
No 450
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=40.21 E-value=67 Score=25.50 Aligned_cols=33 Identities=0% Similarity=-0.120 Sum_probs=22.7
Q ss_pred EEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCC
Q psy6451 155 VHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA 192 (332)
Q Consensus 155 V~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~ 192 (332)
..|+.|.|..|+.....|+.- ++.|.-+|+.+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~ 34 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYLKT 34 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecccC
Confidence 468899999999976554432 455666666554
No 451
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=39.69 E-value=37 Score=29.33 Aligned_cols=25 Identities=8% Similarity=-0.065 Sum_probs=20.4
Q ss_pred EEccCCChhhhhhHHHHHHHHHhhh
Q psy6451 86 HFYKDGSVNCKILDEHMKTLCKKHL 110 (332)
Q Consensus 86 hFy~p~~~~Ck~~~~~l~~LA~~~~ 110 (332)
-||-+-|+.|-...+.|.++...+.
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 3667778999999999988888874
No 452
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=38.74 E-value=56 Score=28.10 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=32.4
Q ss_pred cCCcEEEEEecCCC-hhhHHHHHHHHHHHHHcC----CceEEEEECcC---ChHHHHhC
Q psy6451 149 KSPNMVVHFYKDGS-VNCKILDEHMKTLCKKHL----ETRFIKLNVER---APFLTERL 199 (332)
Q Consensus 149 ~~~~VvV~Fya~wc-~~Ck~l~~~l~~La~~~~----~v~f~kVd~~~---~~~l~~~~ 199 (332)
+++++||.|.-+.| ..|-.+...+.++.++.. .+.++.|.++- .|+...+|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y 109 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKY 109 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHH
Confidence 57899999988888 678887777776655432 36666665553 35444433
No 453
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=38.54 E-value=17 Score=27.05 Aligned_cols=39 Identities=13% Similarity=0.327 Sum_probs=27.6
Q ss_pred EEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCC
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP 123 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~p 123 (332)
|+-|..|.|..|..+...|..++..++ ..+-.+|....+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~ 40 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDP 40 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCH
Confidence 567899999999999999988766655 445555554433
No 454
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=38.00 E-value=44 Score=30.59 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=34.4
Q ss_pred cCCcEEEEEecCCChhhHHHHHHHHHHHHH-----cCCceEEEEECcC
Q psy6451 149 KSPNMVVHFYKDGSVNCKILDEHMKTLCKK-----HLETRFIKLNVER 191 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~-----~~~v~f~kVd~~~ 191 (332)
.+..+||-+-..+|..|..-...|+.|..+ ++++.|+-||--.
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~ 72 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG 72 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC
Confidence 457788889999999999988888887744 4569999999543
No 455
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=37.66 E-value=30 Score=26.21 Aligned_cols=17 Identities=6% Similarity=-0.062 Sum_probs=14.1
Q ss_pred CCChhhhhhHHHHHHHH
Q psy6451 90 DGSVNCKILDEHMKTLC 106 (332)
Q Consensus 90 p~~~~Ck~~~~~l~~LA 106 (332)
|||++|+.+...|..+.
T Consensus 21 ~~Cp~C~~ak~~L~~~~ 37 (90)
T cd03028 21 PRCGFSRKVVQILNQLG 37 (90)
T ss_pred CCCcHHHHHHHHHHHcC
Confidence 89999999888886654
No 456
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=35.87 E-value=3.3e+02 Score=24.56 Aligned_cols=82 Identities=21% Similarity=0.380 Sum_probs=48.3
Q ss_pred hhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCcccccCChhHHHHHh-ccCCcEEEEEe-----cCCChhhHHHH
Q psy6451 96 KILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYEEIPDEKKFFDLC-KKSPNMVVHFY-----KDGSVNCKILD 169 (332)
Q Consensus 96 k~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ei~~e~~~~~~~-~~~~~VvV~Fy-----a~wc~~Ck~l~ 169 (332)
|.+..+...||...-.++.++|+.. .. +....|.- .+.+.. .....+|.||. ...|+.|-.+.
T Consensus 24 KeltR~~dalaa~RR~LP~v~v~~~-Y~-F~g~~G~v---------~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~ 92 (211)
T PF05988_consen 24 KELTRARDALAAERRRLPMVEVDKD-YV-FDGPDGPV---------SLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWA 92 (211)
T ss_pred HHHHHHHHHHHHHHhhCCCccCCCC-eE-EeCCCCcc---------cHHHHcCCCceEEEEeeccCCCCCCCCCchhhhH
Confidence 4455677788888777777666544 11 12222211 122222 45677788887 56799999999
Q ss_pred HHH-HHHHHHcCC-ceEEEEE
Q psy6451 170 EHM-KTLCKKHLE-TRFIKLN 188 (332)
Q Consensus 170 ~~l-~~La~~~~~-v~f~kVd 188 (332)
.++ -.+..-+.. +.|+-|.
T Consensus 93 D~~~g~l~hL~~rd~tfa~vS 113 (211)
T PF05988_consen 93 DHIDGALRHLHARDTTFAVVS 113 (211)
T ss_pred hhhhhhHHHHHhCCceEEEEe
Confidence 888 444433332 6666655
No 457
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=35.66 E-value=46 Score=26.07 Aligned_cols=57 Identities=16% Similarity=0.206 Sum_probs=36.0
Q ss_pred EecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcc--cCcEEEE-EeCCe
Q psy6451 157 FYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIK--VIPTLTL-VKDSV 214 (332)
Q Consensus 157 Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~--~~PTl~~-~~~G~ 214 (332)
||-.+|+-|......+..+. ....+.|+-+.......+...+++. ...+.+. ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD-RGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC-CCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 78999999999998887772 2334777666333333334555554 3454444 46776
No 458
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=33.86 E-value=69 Score=25.86 Aligned_cols=51 Identities=12% Similarity=0.230 Sum_probs=34.3
Q ss_pred ChhhHHHHHHHHHHHHHcCCceEEEEECcCCh-HHHHhCC--cccCcEEEEEeC
Q psy6451 162 SVNCKILDEHMKTLCKKHLETRFIKLNVERAP-FLTERLR--IKVIPTLTLVKD 212 (332)
Q Consensus 162 c~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~-~l~~~~~--I~~~PTl~~~~~ 212 (332)
|++|..|...|...-..-..+.+.+|+...-. .+....| -+++|++++=.+
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~ 77 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADG 77 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCC
Confidence 99999998877654433334778888876543 3455555 478999876543
No 459
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=32.80 E-value=76 Score=25.33 Aligned_cols=55 Identities=5% Similarity=0.089 Sum_probs=38.4
Q ss_pred ecCCchhhhhhhcC--CCcEEEEEccCCChhhhhhHHHHHHHHHhhhh-ceeeecccC
Q psy6451 66 EIPDEKKFFDLCKK--SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVE 120 (332)
Q Consensus 66 ev~~e~~f~~~~~~--~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~-~~f~kvd~~ 120 (332)
+|++..+|.+++.. ..++++.=....|+-....-..|+..+...++ +.+.-+++.
T Consensus 3 ~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~ 60 (105)
T PF11009_consen 3 PLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVI 60 (105)
T ss_dssp E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGG
T ss_pred ccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEE
Confidence 56778888888876 66788888888899999999999999999887 665555444
No 460
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=30.99 E-value=46 Score=32.99 Aligned_cols=32 Identities=13% Similarity=0.315 Sum_probs=23.6
Q ss_pred EEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccC
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVE 120 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~ 120 (332)
|+-|..|||++|+.+-..|... ++.|..++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~ 35 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLD 35 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECC
Confidence 6789999999999977777553 4555555554
No 461
>KOG2603|consensus
Probab=30.64 E-value=1.4e+02 Score=28.70 Aligned_cols=66 Identities=15% Similarity=0.257 Sum_probs=46.2
Q ss_pred ceEecCCchhhhhhhcCCCc---EEEEEccC----CChhhhhhHHHHHHHHHhhh----hc-----eeeecccCCCCccc
Q psy6451 63 EYEEIPDEKKFFDLCKKSPN---MVVHFYKD----GSVNCKILDEHMKTLCKKHL----ET-----RFIKLNVERAPFLT 126 (332)
Q Consensus 63 ~~~ev~~e~~f~~~~~~~~~---vvVhFy~p----~~~~Ck~~~~~l~~LA~~~~----~~-----~f~kvd~~k~pfl~ 126 (332)
.|..++ ...|-.+++..++ ++|.|-|. .|..|+..+.++..+|..+. +. =|..||-++.|-..
T Consensus 41 ~VI~~n-~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~F 119 (331)
T KOG2603|consen 41 GVIRMN-DDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVF 119 (331)
T ss_pred CeEEec-CcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHH
Confidence 566674 4567777764333 88888765 49999999999999999863 22 36778877766444
Q ss_pred ccC
Q psy6451 127 GQQ 129 (332)
Q Consensus 127 ~k~ 129 (332)
+..
T Consensus 120 q~l 122 (331)
T KOG2603|consen 120 QQL 122 (331)
T ss_pred HHh
Confidence 443
No 462
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=29.50 E-value=1.3e+02 Score=23.14 Aligned_cols=49 Identities=10% Similarity=0.173 Sum_probs=37.3
Q ss_pred eEecCCchhhhhhhc-CCCcEEEEEccCCChhhhhhHHHHHHHHHhh-hhceee
Q psy6451 64 YEEIPDEKKFFDLCK-KSPNMVVHFYKDGSVNCKILDEHMKTLCKKH-LETRFI 115 (332)
Q Consensus 64 ~~ev~~e~~f~~~~~-~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~-~~~~f~ 115 (332)
+.+|++.+++..+++ ....+||-||...-. .....|.++|..+ ....|.
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~ 52 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFF 52 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEE
Confidence 567888888999998 788888888876443 4567788889888 556663
No 463
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=28.99 E-value=4.6e+02 Score=24.11 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=18.9
Q ss_pred hhhhhcCC-CcEEEEEccCCChhhhhhH
Q psy6451 73 FFDLCKKS-PNMVVHFYKDGSVNCKILD 99 (332)
Q Consensus 73 f~~~~~~~-~~vvVhFy~p~~~~Ck~~~ 99 (332)
|..+.+.. ..+||-+--.-|+-|.++-
T Consensus 180 yeri~~~~kg~gvvpl~g~~C~GC~m~l 207 (239)
T COG1579 180 YERIRKNKKGVGVVPLEGRVCGGCHMKL 207 (239)
T ss_pred HHHHHhcCCCceEEeecCCcccCCeeee
Confidence 33344555 6788888888899998743
No 464
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=28.34 E-value=2e+02 Score=22.48 Aligned_cols=31 Identities=3% Similarity=0.166 Sum_probs=19.8
Q ss_pred EecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCC
Q psy6451 157 FYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA 192 (332)
Q Consensus 157 Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~ 192 (332)
|+.|.|..|+.....|++ .++.|-.+|..+.
T Consensus 1 Y~~~~C~t~rka~~~L~~-----~gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE-----NGIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH-----TT--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHH-----cCCCeEeehhhhC
Confidence 678999999998866653 3566777787765
No 465
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=27.93 E-value=4.1e+02 Score=23.54 Aligned_cols=125 Identities=18% Similarity=0.108 Sum_probs=67.6
Q ss_pred hhhhhhcCCCcEEEEEccCCCh-hhhhhHHHHHHHHHhhh-----h--ceeeecccCCCCcccccCCCCcccccCChhHH
Q psy6451 72 KFFDLCKKSPNMVVHFYKDGSV-NCKILDEHMKTLCKKHL-----E--TRFIKLNVERAPFLTGQQGHGEYEEIPDEKKF 143 (332)
Q Consensus 72 ~f~~~~~~~~~vvVhFy~p~~~-~Ck~~~~~l~~LA~~~~-----~--~~f~kvd~~k~pfl~~k~g~g~~~ei~~e~~~ 143 (332)
.|...--++++++|.|.=..|+ .|-.+...|..+-.... . +.|+++|.+.-. .
T Consensus 59 ~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDt-----------------p-- 119 (207)
T COG1999 59 PFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDT-----------------P-- 119 (207)
T ss_pred EeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCC-----------------H--
Confidence 4444444677777777666665 69888877766665543 2 346677765211 1
Q ss_pred HHHhccCCcEEEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEEe-CCeeeeeEecc
Q psy6451 144 FDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVK-DSVTKDYIVGF 222 (332)
Q Consensus 144 ~~~~~~~~~VvV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~~-~G~~v~~~~G~ 222 (332)
+.+++.-. -+|+..|-+---. ...++++++.|. +-+.++..... ..|.+..-..++++. +|+....+.+.
T Consensus 120 -~~lk~Y~~--~~~~~~~~~ltg~-~~~~~~~~k~~~-V~~~~v~~~~~----~~y~~~Hs~~~~lid~~G~~~~~~~~~ 190 (207)
T COG1999 120 -EVLKKYAE--LNFDPRWIGLTGT-PEQIEEVAKAYG-VFYSKVPLDDS----QNYTIDHSAGFYLIDADGRFLGTYDYG 190 (207)
T ss_pred -HHHHHHhc--ccCCCCeeeeeCC-HHHHHHHHHHhc-ceeeecccCCC----CCceeeeeeEEEEECCCCeEEEEecCC
Confidence 11111111 3444444433332 344566666653 22223333322 456666666666664 89999888776
Q ss_pred cC
Q psy6451 223 TE 224 (332)
Q Consensus 223 ~~ 224 (332)
..
T Consensus 191 ~~ 192 (207)
T COG1999 191 EP 192 (207)
T ss_pred CC
Confidence 55
No 466
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=27.11 E-value=2.3e+02 Score=19.92 Aligned_cols=56 Identities=11% Similarity=0.117 Sum_probs=33.8
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECc----CChHHHHhCCcccCcEEEEEeCCe
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVE----RAPFLTERLRIKVIPTLTLVKDSV 214 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~----~~~~l~~~~~I~~~PTl~~~~~G~ 214 (332)
+..|+.+.|+.|..+.-.++...-. ..+..++.. ..+.+.+..+...+|++. .+|.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~ 61 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDL 61 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCE
Confidence 3445567799998877655543322 344445532 235566677888899875 3454
No 467
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=27.08 E-value=51 Score=25.58 Aligned_cols=20 Identities=0% Similarity=-0.037 Sum_probs=16.1
Q ss_pred EEEccCCChhhhhhHHHHHH
Q psy6451 85 VHFYKDGSVNCKILDEHMKT 104 (332)
Q Consensus 85 VhFy~p~~~~Ck~~~~~l~~ 104 (332)
.-|+.|+|+.|+..-..|..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE 21 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 46889999999997766644
No 468
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=26.89 E-value=1.3e+02 Score=23.21 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=37.0
Q ss_pred eEecCCchhhhhhhcCCCcEEEEEccCCChhhhhhHHHHHHHHHhh-hhceee
Q psy6451 64 YEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKH-LETRFI 115 (332)
Q Consensus 64 ~~ev~~e~~f~~~~~~~~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~-~~~~f~ 115 (332)
+.+|++.+++..++..++.+||-|+...-. .+...+..+|..+ .+..|.
T Consensus 2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~ 51 (104)
T cd03069 2 SVELRTEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFA 51 (104)
T ss_pred ccccCCHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEE
Confidence 456777788888888888999999877544 4667888888887 456663
No 469
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=26.17 E-value=90 Score=28.04 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=25.2
Q ss_pred CChHHHHhCCcccCcEEEEEeCCeeeeeEecccCc
Q psy6451 191 RAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTEL 225 (332)
Q Consensus 191 ~~~~l~~~~~I~~~PTl~~~~~G~~v~~~~G~~~~ 225 (332)
-.|.+-+.|+|..+|++++.. +...+.+.|-.+.
T Consensus 150 IDP~lF~~F~I~~VPafVv~C-~~~yD~I~GNIsl 183 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFC-SQGYDIIRGNLRV 183 (212)
T ss_pred ECHHHHHhcCCccccEEEEEc-CCCCCEEEecccH
Confidence 468889999999999999974 4445666664443
No 470
>PRK10853 putative reductase; Provisional
Probab=26.00 E-value=1.5e+02 Score=23.94 Aligned_cols=34 Identities=6% Similarity=-0.044 Sum_probs=23.0
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCC
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA 192 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~ 192 (332)
+..|..|.|..|+....-|+.- ++.|--+|.-+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-----GIDYRFHDYRVD 35 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-----CCCcEEeehccC
Confidence 4567789999999987655532 455556665544
No 471
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=25.88 E-value=67 Score=27.40 Aligned_cols=26 Identities=12% Similarity=0.080 Sum_probs=24.3
Q ss_pred EEEEccCCChhhhhhHHHHHHHHHhh
Q psy6451 84 VVHFYKDGSVNCKILDEHMKTLCKKH 109 (332)
Q Consensus 84 vVhFy~p~~~~Ck~~~~~l~~LA~~~ 109 (332)
|..|+-|.|+.|-...+.|.+++..+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~ 28 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEY 28 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHh
Confidence 56899999999999999999999997
No 472
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=25.54 E-value=2.2e+02 Score=24.74 Aligned_cols=104 Identities=13% Similarity=0.061 Sum_probs=47.3
Q ss_pred EEEEEccCCChhhhhhHHHHHHHHHhhhhceeeecccCCCCcccccCCCCcccccCChhHHHHHhccCCcEEEEEecCCC
Q psy6451 83 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYEEIPDEKKFFDLCKKSPNMVVHFYKDGS 162 (332)
Q Consensus 83 vvVhFy~p~~~~Ck~~~~~l~~LA~~~~~~~f~kvd~~k~pfl~~k~g~g~~~ei~~e~~~~~~~~~~~~VvV~Fya~wc 162 (332)
-+|=|.+.+-+....+.+.+..|...+|+..++=.... ........+.-...+.++|.|+-
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T-------------------~tg~~~~~~~~~~~v~~~~~P~D 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTT-------------------PTGREMARKLLPDRVDVQYLPLD 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES--------------------CCHHHHHHGG-GGG-SEEE---S
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecC-------------------CchHHHHHHhCCCCeEEEEeCcc
Confidence 34555588999999999999999999998765322111 00111111111234557778875
Q ss_pred hhhHHHHHHHHHHHHHcCCceEEEEECcCChHHHHhCCcccCcEEEEE
Q psy6451 163 VNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLV 210 (332)
Q Consensus 163 ~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~~~l~~~~~I~~~PTl~~~ 210 (332)
-+.. +..+.+....-.++-+..+--|.+.....-.++|++++=
T Consensus 83 ~~~~-----~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 83 FPWA-----VRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp SHHH-----HHHHHHHH--SEEEEES----HHHHHH-----S-EEEEE
T ss_pred CHHH-----HHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 4322 133333443345666777788888888888999998763
No 473
>KOG1752|consensus
Probab=25.00 E-value=67 Score=25.51 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=18.1
Q ss_pred cEEEEEccCCChhhhhhHHHHHH
Q psy6451 82 NMVVHFYKDGSVNCKILDEHMKT 104 (332)
Q Consensus 82 ~vvVhFy~p~~~~Ck~~~~~l~~ 104 (332)
.-||-|..+||+.|..+...|..
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~ 36 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSD 36 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHh
Confidence 35667999999999997766644
No 474
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.94 E-value=64 Score=24.26 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=33.4
Q ss_pred EEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCC--------------hH--HHHhCCcccCcEEEEEeCCeee
Q psy6451 155 VHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA--------------PF--LTERLRIKVIPTLTLVKDSVTK 216 (332)
Q Consensus 155 V~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~--------------~~--l~~~~~I~~~PTl~~~~~G~~v 216 (332)
+.||+..||.|......|+++-- .+-.|++... |. -++..|--++|++++ .+|+.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v-----~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNV-----DYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCC-----CceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEE
Confidence 67999999999877655555432 2333333321 11 244567778888764 455443
No 475
>COG1422 Predicted membrane protein [Function unknown]
Probab=24.72 E-value=2.8e+02 Score=24.83 Aligned_cols=45 Identities=16% Similarity=0.315 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHH
Q psy6451 8 TVLNVAKNVEKQIDEEIYRL-ENLDLDSIEKLREDHLKKLKAKAKR 52 (332)
Q Consensus 8 ~~~~~~~~~e~~~d~~~~~l-~~~d~~~l~~~r~~Rl~el~~~~~~ 52 (332)
.-++.++..=++..++..++ +.-|+..+++.+++|++-+..+..-
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~el 117 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQREL 117 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444 2236778898888888776655543
No 476
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=24.14 E-value=3.6e+02 Score=21.47 Aligned_cols=46 Identities=24% Similarity=0.290 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q psy6451 7 DTVLNVAKNVEKQIDEEIYRLENLDLDSIEKLREDHLKKLKAKAKR 52 (332)
Q Consensus 7 ~~~~~~~~~~e~~~d~~~~~l~~~d~~~l~~~r~~Rl~el~~~~~~ 52 (332)
+.++..++.+=+.+++.|..--+...++++.+|.+-..-|++-..+
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~r 56 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDR 56 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777666666666778888887755555554433
No 477
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=23.84 E-value=4.3e+02 Score=22.01 Aligned_cols=32 Identities=3% Similarity=-0.136 Sum_probs=21.4
Q ss_pred CCCcEEEEEccCCChhhhhh-HHHHHHHHHhhh
Q psy6451 79 KSPNMVVHFYKDGSVNCKIL-DEHMKTLCKKHL 110 (332)
Q Consensus 79 ~~~~vvVhFy~p~~~~Ck~~-~~~l~~LA~~~~ 110 (332)
+...||+.|-..||+.|-.- .+.|......|.
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~ 61 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELK 61 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHH
Confidence 33344555556789999986 777777776664
No 478
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=23.66 E-value=4.3e+02 Score=21.99 Aligned_cols=79 Identities=13% Similarity=0.192 Sum_probs=50.6
Q ss_pred ccCCcEEEEEecCCChh----hHHH--HHHHHHHHHHcCCceEEEEECcCC------------------hHHHHhCCccc
Q psy6451 148 KKSPNMVVHFYKDGSVN----CKIL--DEHMKTLCKKHLETRFIKLNVERA------------------PFLTERLRIKV 203 (332)
Q Consensus 148 ~~~~~VvV~Fya~wc~~----Ck~l--~~~l~~La~~~~~v~f~kVd~~~~------------------~~l~~~~~I~~ 203 (332)
+..++.+|++..|.... |+.+ ++.+-..-+ ....+..-|+... -..+..++...
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~--~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~ 96 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS--QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQ 96 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH--cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCC
Confidence 45699999999998754 4443 222222222 2366666665543 22456788999
Q ss_pred CcEEEEEeC-C---eeeeeEecccCcchh
Q psy6451 204 IPTLTLVKD-S---VTKDYIVGFTELGNC 228 (332)
Q Consensus 204 ~PTl~~~~~-G---~~v~~~~G~~~~~~~ 228 (332)
+|.+.++-. . .++.++.|..+..++
T Consensus 97 fP~~avI~~~~~~~~vl~~i~G~~~~~el 125 (136)
T cd02990 97 LPAILIIMGKRSSNEVLNVIQGNTGVDEL 125 (136)
T ss_pred CCeEEEEEecCCceEEEEEEECCCCHHHH
Confidence 999888742 2 677888888776554
No 479
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=23.47 E-value=27 Score=26.55 Aligned_cols=13 Identities=31% Similarity=0.248 Sum_probs=0.0
Q ss_pred cchhhhhcccccc
Q psy6451 299 PDIKKKQKKRLIE 311 (332)
Q Consensus 299 p~~~~~~~~~~~~ 311 (332)
|=-|+.++.+..+
T Consensus 8 PiGRkgk~~~~~~ 20 (81)
T PF14812_consen 8 PIGRKGKKSRPKR 20 (81)
T ss_dssp -------------
T ss_pred ccCcCCCCCCCCC
Confidence 4445544433333
No 480
>PRK10026 arsenate reductase; Provisional
Probab=23.44 E-value=2.1e+02 Score=24.00 Aligned_cols=34 Identities=6% Similarity=-0.007 Sum_probs=22.4
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCC
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA 192 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~ 192 (332)
+..|+.|.|..|+....-|+.- ++.|--+|+-+.
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~~~ 37 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHYLET 37 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeeeCC
Confidence 4567899999999877555432 455555555443
No 481
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=23.28 E-value=3.3e+02 Score=24.16 Aligned_cols=54 Identities=22% Similarity=0.199 Sum_probs=37.3
Q ss_pred ccCCcEEEEEecCCC-hhhHHHHHHHHHHHHHcC-C------ceEEEEECc-CChHHHHhCCc
Q psy6451 148 KKSPNMVVHFYKDGS-VNCKILDEHMKTLCKKHL-E------TRFIKLNVE-RAPFLTERLRI 201 (332)
Q Consensus 148 ~~~~~VvV~Fya~wc-~~Ck~l~~~l~~La~~~~-~------v~f~kVd~~-~~~~l~~~~~I 201 (332)
-+++++||.|.=+.| ..|-.+-..|..+.++.. . +.|+.+|-+ ..|.....|..
T Consensus 65 l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 65 LKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred cCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 378899998887777 568888887777766654 2 455666644 34666667765
No 482
>KOG2767|consensus
Probab=22.85 E-value=71 Score=30.96 Aligned_cols=26 Identities=12% Similarity=0.081 Sum_probs=14.0
Q ss_pred cccCcchhhHhHHHHHHHHHHHcCCc
Q psy6451 221 GFTELGNCADFSTEMLEWRIAQAGVI 246 (332)
Q Consensus 221 G~~~~~~~~~f~~~~Le~~L~~~g~l 246 (332)
|..+..-+.+.+...+..++.-.+.-
T Consensus 78 G~Hd~~KLqdlLdgFIkKFVlC~~C~ 103 (400)
T KOG2767|consen 78 GAHEASKLQDLLDGFIKKFVLCPSCE 103 (400)
T ss_pred ccccHHHHHHHHHHHHHHheeCcCCC
Confidence 55555555555555555555444433
No 483
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=22.23 E-value=2e+02 Score=20.17 Aligned_cols=54 Identities=11% Similarity=0.043 Sum_probs=30.7
Q ss_pred EEecCCChhhHHHHHHHHHHHHHcCCceEEEEECc-CChHHHHhCCc-ccCcEEEEEeCCe
Q psy6451 156 HFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVE-RAPFLTERLRI-KVIPTLTLVKDSV 214 (332)
Q Consensus 156 ~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~-~~~~l~~~~~I-~~~PTl~~~~~G~ 214 (332)
.++.+.|+.|..+.-.+....-. .....++.. ..+.+.+.... ..+|++.. +|.
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~---~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~ 58 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVP---YEYVEEDLGNKSELLLASNPVHKKIPVLLH--NGK 58 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCC---CEEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCE
Confidence 45577899999887655544322 334444432 23344444444 68998863 553
No 484
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=21.82 E-value=75 Score=25.02 Aligned_cols=20 Identities=5% Similarity=0.008 Sum_probs=15.6
Q ss_pred EEEccCCChhhhhhHHHHHH
Q psy6451 85 VHFYKDGSVNCKILDEHMKT 104 (332)
Q Consensus 85 VhFy~p~~~~Ck~~~~~l~~ 104 (332)
.-|+.|+|..|+.....|..
T Consensus 2 ~iy~~~~C~~crka~~~L~~ 21 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA 21 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 45889999999997666633
No 485
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=21.62 E-value=3e+02 Score=25.77 Aligned_cols=54 Identities=26% Similarity=0.369 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6451 4 VLQDTVLNVAKNVEKQIDEEIYRLENL--DLDSIEKLREDHLKKLKAKAKRNQELK 57 (332)
Q Consensus 4 ~~~~~~~~~~~~~e~~~d~~~~~l~~~--d~~~l~~~r~~Rl~el~~~~~~~~~~~ 57 (332)
-++..+.++++.+.+++..--+.++++ |+..|+...++|-.||....++.+.+.
T Consensus 162 ~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 162 EIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777787777777655556554 444688888888888877777655443
No 486
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=21.21 E-value=2.2e+02 Score=22.27 Aligned_cols=49 Identities=4% Similarity=0.100 Sum_probs=36.0
Q ss_pred eEecCCchhhhhhhcCC-CcEEEEEccCCChhhhhhHHHHHHHHHhh-hhceee
Q psy6451 64 YEEIPDEKKFFDLCKKS-PNMVVHFYKDGSVNCKILDEHMKTLCKKH-LETRFI 115 (332)
Q Consensus 64 ~~ev~~e~~f~~~~~~~-~~vvVhFy~p~~~~Ck~~~~~l~~LA~~~-~~~~f~ 115 (332)
+.+|++.+++..++... ..+||-||...-. .....+.++|..+ ....|.
T Consensus 2 v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~ 52 (107)
T cd03068 2 SKQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFH 52 (107)
T ss_pred ceEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEE
Confidence 46777888888888776 7888888877543 4567788888887 556663
No 487
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=21.20 E-value=4.2e+02 Score=21.62 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy6451 36 EKLREDHLKKLKAKAKRNQ 54 (332)
Q Consensus 36 ~~~r~~Rl~el~~~~~~~~ 54 (332)
++.-+.|+++|++...+..
T Consensus 93 e~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 93 EEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444557777777665543
No 488
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=21.17 E-value=89 Score=26.94 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=21.6
Q ss_pred EEccCCChhhhhhHHHHHHHHHhhhh
Q psy6451 86 HFYKDGSVNCKILDEHMKTLCKKHLE 111 (332)
Q Consensus 86 hFy~p~~~~Ck~~~~~l~~LA~~~~~ 111 (332)
+|.-|.|++|-.+.+.+.++...+..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 68999999999999999999999875
No 489
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=20.92 E-value=2.3e+02 Score=21.64 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=11.4
Q ss_pred HHHHHHhhHHHHHHhcCCChHHHHHHHHHHH
Q psy6451 13 AKNVEKQIDEEIYRLENLDLDSIEKLREDHL 43 (332)
Q Consensus 13 ~~~~e~~~d~~~~~l~~~d~~~l~~~r~~Rl 43 (332)
+..+|+..|....+|-. .|+.-|+.|+
T Consensus 42 LD~LE~rnD~l~~~L~~----LLesnrq~R~ 68 (83)
T PF03670_consen 42 LDHLEQRNDHLHAQLQE----LLESNRQIRL 68 (83)
T ss_pred HHHHHHhhhHHHHHHHH----HHHHHHHHHH
Confidence 33344444443333332 3444454444
No 490
>KOG2792|consensus
Probab=20.79 E-value=5.5e+02 Score=24.07 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=29.7
Q ss_pred cCCcEEEEEecCCChh-h----HHHHHHHHHHHHHcCCc---eEEEEECcC
Q psy6451 149 KSPNMVVHFYKDGSVN-C----KILDEHMKTLCKKHLET---RFIKLNVER 191 (332)
Q Consensus 149 ~~~~VvV~Fya~wc~~-C----k~l~~~l~~La~~~~~v---~f~kVd~~~ 191 (332)
.++++|++|.=+.||- | ..|...+.++..+..-. .|+.+|-+.
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeR 188 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPER 188 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCccc
Confidence 5799999999999964 4 44555566665554332 788888743
No 491
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=20.58 E-value=2.5e+02 Score=22.98 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=22.0
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCceEEEEECcCC
Q psy6451 154 VVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA 192 (332)
Q Consensus 154 vV~Fya~wc~~Ck~l~~~l~~La~~~~~v~f~kVd~~~~ 192 (332)
+..|+.|.|..|+....-|+.- ++.|--+|+-+.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~-----gi~~~~~d~~~~ 36 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS-----GHDVEVQDILKE 36 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeccCC
Confidence 4567789999999977655532 444555554443
Done!