RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6451
(332 letters)
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 116 bits (291), Expect = 3e-32
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 6/131 (4%)
Query: 128 QQGHGEYEEIPDEKKFFDLCKKSPN--MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFI 185
GE EI + ++ + +V+H Y+ C ++++H+ L +K ET+F+
Sbjct: 6 SGKFGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFV 65
Query: 186 KLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELGNCADFSTEMLEWRIAQAGV 245
K V E +PT+ + K+ + +G E G + E LEW++++ G
Sbjct: 66 KAIVNSCI---EHYHDNCLPTIFVYKNGQIEGKFIGIIECGG-INLKLEELEWKLSEVGA 121
Query: 246 IDYEGDLFNPP 256
I + + + P
Sbjct: 122 IQSDLEENSGP 132
Score = 62.9 bits (153), Expect = 2e-12
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 57 KALGHGEYEEIPDEKKFFDLCKKSPN--MVVHFYKDGSVNCKILDEHMKTLCKKHLETRF 114
+ GE EI + ++ + +V+H Y+ C ++++H+ L +K ET+F
Sbjct: 5 SSGKFGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKF 64
Query: 115 IKLNVERAP 123
+K V
Sbjct: 65 VKAIVNSCI 73
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 110 bits (277), Expect = 3e-30
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 131 HGEYEEIPDEKKFFDLCKKSPN--MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLN 188
GE EI + ++ + +++H Y+ C ++++H+ L +K ET+F+K
Sbjct: 2 FGELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAI 61
Query: 189 VERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELGNCADFSTEMLEWRIAQAGVIDY 248
V + +PT+ + K+ + +G E G + E LEW++A+ G I
Sbjct: 62 VNSCI---QHYHDNCLPTIFVYKNGQIEAKFIGIIECGG-INLKLEELEWKLAEVGAIQT 117
Query: 249 E 249
+
Sbjct: 118 D 118
Score = 62.1 bits (151), Expect = 2e-12
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 61 HGEYEEIPDEKKFFDLCKKSPN--MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLN 118
GE EI + ++ + +++H Y+ C ++++H+ L +K ET+F+K
Sbjct: 2 FGELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAI 61
Query: 119 VERAP 123
V
Sbjct: 62 VNSCI 66
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 104 bits (260), Expect = 1e-26
Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
Query: 128 QQGHGEYEEIPDEKKFFDLCKKSPN---MVVHFYKDGSVNCKILDEHMKTLCKKHLETRF 184
+G E+ ++F + +K +VV+ Y+DG C L+ ++ L ++ +F
Sbjct: 95 GPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKF 154
Query: 185 IKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELGNCADFSTEMLEWRIAQAG 244
K+ +R V+PTL + K + E DF +E + + G
Sbjct: 155 CKIRASNTGA-GDRFSSDVLPTLLVYKGGELISNFISVAEQFA-EDFFAADVESFLNEYG 212
Query: 245 VID 247
++
Sbjct: 213 LLP 215
Score = 74.7 bits (183), Expect = 6e-16
Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 8/107 (7%)
Query: 21 DEEIYRLENLDLDSIEKLREDHLKKLKAKAKRNQELKALGHGEYEEIPDEKKFFDLCKKS 80
+ E+ + D + K R ++ + K +G E+ ++F + +K
Sbjct: 63 EYELIHQDKEDEGCLRKYRRQCMQDMHQKLSFGPR-----YGFVYELETGEQFLETIEKE 117
Query: 81 PN---MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPF 124
+VV+ Y+DG C L+ ++ L ++ +F K+
Sbjct: 118 QKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTGA 164
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 100 bits (251), Expect = 3e-25
Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 5/136 (3%)
Query: 125 LTGQQGHGEYEEIPDEKKFFDLCKKSPN---MVVHFYKDGSVNCKILDEHMKTLCKKHLE 181
L+ +G E+ ++F + +K +VVH Y+DG C L+ + L ++
Sbjct: 105 LSFGPRYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM 164
Query: 182 TRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELGNCADFSTEMLEWRIA 241
+F K+ +R V+PTL + K + TE +F T +E +
Sbjct: 165 VKFCKIKASNTGA-GDRFSSDVLPTLLVYKGGELLSNFISVTEQLA-EEFFTGDVESFLN 222
Query: 242 QAGVIDYEGDLFNPPD 257
+ G++ +
Sbjct: 223 EYGLLPEKEMHVLEQT 238
Score = 73.2 bits (179), Expect = 3e-15
Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 8/127 (6%)
Query: 1 MESVLQDTVLNVAKNVEKQIDEEIYRLENLDLDSIEKLREDHLKKLKAKAKRNQELKALG 60
+S + E+ + D + + K R ++ + K
Sbjct: 56 PQSRDDKDSKERFSRKMSVQEYELIHKDKEDENCLRKYRRQCMQDMHQKLSFGP-----R 110
Query: 61 HGEYEEIPDEKKFFDLCKKSPN---MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKL 117
+G E+ ++F + +K +VVH Y+DG C L+ + L ++ +F K+
Sbjct: 111 YGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKI 170
Query: 118 NVERAPF 124
Sbjct: 171 KASNTGA 177
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 2e-08
Identities = 54/394 (13%), Positives = 116/394 (29%), Gaps = 152/394 (38%)
Query: 3 SVLQDTVLNVAKN--VEKQIDEEIY-------RLENLDLDSIEKLREDHLKKLKAKAKRN 53
+ + L+V + V+ ++D +I+ L+ ++KL +++ +
Sbjct: 164 TWV---ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 54 QELKALGHGEYEEIPDEKKFF--------------DLCKKSPNMVVHFYKDGSVNCKIL- 98
+K I E + ++ + F +++CKIL
Sbjct: 221 SNIKL----RIHSIQAELRRLLKSKPYENCLLVLLNVQ--NAKAWNAF----NLSCKILL 270
Query: 99 ---------------------DEHMKTLCKKHLETRFIK-LNVERAPFLTGQQGHGEYEE 136
D H TL +++ +K L+ ++
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------------PQD 317
Query: 137 IPDEKKFFDLCKKSP---NMVVHFYKDG--------SVNCKILDEHMKTLCKKHLET--- 182
+P E + +P +++ +DG VNC L ++ LE
Sbjct: 318 LPRE-----VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SSLNVLEPAEY 371
Query: 183 --RFIKLNV--ERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELGNCADFSTEMLEW 238
F +L+V A IPT+ L ++ W
Sbjct: 372 RKMFDRLSVFPPSAH----------IPTILL------------------------SLI-W 396
Query: 239 RIAQAGVIDYEGDLFNPPDIKKK-QKKRMIEKKKIIRGRNSTGVIDYEAGVIDYEGDLFN 297
++ + + K K ++EK + + ST I +L
Sbjct: 397 ---------FDVIKSDVMVVVNKLHKYSLVEK----QPKESTISIP------SIYLELKV 437
Query: 298 PPDIKKKQKKRLIEKKKIIRGRNSSDEDSDDPDD 331
+ + + +++ I + +S D D
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDL-IPPYLD 470
Score = 47.5 bits (112), Expect = 5e-06
Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 37/163 (22%)
Query: 19 QIDEEIYRLENLDLDSIEKLREDHLKKLKAKAKRNQELKALGHGEYEEI---PDEKK--- 72
+D E + D + + + K ++ L E + I D
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 73 --FFDLCKKSPNMVVHFYKDG-SVNCKILDEHMKTLCK-------KHLETR--------- 113
F+ L K MV F ++ +N K L +KT + ++E R
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 114 FIKLNVERAPFLTGQQGHGEYEEIPDEKKFFDLCKKSPNMVVH 156
F K NV R Y ++ + +L + + N+++
Sbjct: 126 FAKYNVSRLQ---------PYLKL--RQALLEL-RPAKNVLID 156
Score = 44.1 bits (103), Expect = 5e-05
Identities = 50/274 (18%), Positives = 84/274 (30%), Gaps = 76/274 (27%)
Query: 86 HFYKDGSVNCKILDEHMKTLCKK---HLETRFIK-LNVERAP-FLTGQQGHGEYEEI--- 137
H + D + K E F+ + + E + I
Sbjct: 4 HHHMDFETG------EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS 57
Query: 138 PDEKK-----FFDLCKKSPNMVVHFYKDG-SVNCKILDEHMKTLCK-------KHLETR- 183
D F+ L K MV F ++ +N K L +KT + ++E R
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 184 --------FIKLNVERA-PFLTER---LRIKVIPTLT-----------LVKDSVTKDYIV 220
F K NV R P+L R L ++ + + D V Y V
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD-VCLSYKV 176
Query: 221 ----GFT----ELGNC--ADFSTEMLE---WRIAQAGV--IDYEGDLFNPPDIKKKQKKR 265
F L NC + EML+ ++I D+ ++ + + +R
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 266 MIEKKKIIRGRNSTGVID--YEAGVIDYEGDLFN 297
+++ K N V+ A + FN
Sbjct: 237 LLKSK---PYENCLLVLLNVQNAKAWNA----FN 263
Score = 37.1 bits (85), Expect = 0.007
Identities = 34/204 (16%), Positives = 58/204 (28%), Gaps = 52/204 (25%)
Query: 16 VEKQIDEEIYRLENLDLDSIEKLREDHLKKLKAKAKRNQEL--KALGHGEYEEIPDEKKF 73
VEKQ E + ++ L+ LK K + L + H Y IP
Sbjct: 417 VEKQPKESTISIPSIYLE------------LKVKLENEYALHRSIVDH--Y-NIPKTFDS 461
Query: 74 FDLCKKSPNMVVHFYKDGSVNCKILDEHMKT---------LCKKHLETRFIKLNVERAPF 124
DL + + + + H+K L+ RF++ +
Sbjct: 462 DDLIPPYLDQYFYSH---------IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 125 LTGQQGHGEYEEIPDEKKFFD-LCKKSP------NMVVHFYKDGSVNCKILDEHMKTLCK 177
G + K + +C P N ++ F N +C
Sbjct: 513 AWNASG-SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL---------ICS 562
Query: 178 KHLETRFIKLNVERAPFLTERLRI 201
K+ + I L E E +
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHKQ 586
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 2e-07
Identities = 49/294 (16%), Positives = 83/294 (28%), Gaps = 102/294 (34%)
Query: 80 SPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRF---IKLNVERAP------FLTGQQG 130
M + YK + + H + + I V P F G++G
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNR-----ADNHFKDTYGFSILDIVINNPVNLTIHF-GGEKG 1681
Query: 131 HGEYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNC----KILDEHMKTLCKKHLE----- 181
E M+ DG + K ++EH + + +
Sbjct: 1682 KRIRE-------------NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 182 TRF----IKLNVERAPFLTERLRIK-VIPTLTLVKDSVTKDYIVGFTELG-NCADFSTEM 235
T+F + L +E+A F E L+ K +IP G + LG A
Sbjct: 1729 TQFTQPALTL-MEKAAF--EDLKSKGLIPA---------DATFAGHS-LGEYAA------ 1769
Query: 236 LEWRIAQAGVIDYE---------GDLFN---PPDIKKKQKKRM--IEKKKIIRGRNSTGV 281
L + A V+ E G P D + M I ++ + +
Sbjct: 1770 L---ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL 1826
Query: 282 IDYEAGVIDYEGDL-----FNPPDIKKKQ-----KKRLIEK----------KKI 315
V G L +N + +Q R ++ +KI
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNVEN---QQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Score = 42.3 bits (99), Expect = 2e-04
Identities = 46/286 (16%), Positives = 80/286 (27%), Gaps = 130/286 (45%)
Query: 3 SVLQDTV----------LNVA----KNVEKQIDE-----------EIYRLEN-------- 29
S+L+D++ L+++ + V+ +++ EI L N
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS-LVNGAKNLVVS 380
Query: 30 ---LDLDSIEKLREDHLKKLKAKAKRNQELKALGHGEYEEIPDEKKFFDLCKKSPNMVVH 86
L + L+K KA + +Q IP ++
Sbjct: 381 GPPQSLYGLNL----TLRKAKAPSGLDQ----------SRIPFSER-------------- 412
Query: 87 FYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTGQQGHGEYEEIPDEKKFFDL 146
K RF L V +PF H + DL
Sbjct: 413 --------------------KLKFSNRF--LPVA-SPF------HSHLLVPASDLINKDL 443
Query: 147 CKKS----------PNMVVHFYKDGS----VNCKILDEHMKTLCKKHL---------ETR 183
K + P V + DGS ++ I + + + + + T
Sbjct: 444 VKNNVSFNAKDIQIP--VYDTF-DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500
Query: 184 FIKL---NVERAPFLTERLR----IKVIPTLTLVKDSVTKDYIVGF 222
+ LT R + ++VI TL + DY GF
Sbjct: 501 ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL-DINPDDDY--GF 543
Score = 34.3 bits (78), Expect = 0.062
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 15/79 (18%)
Query: 6 QDTVLNVAKNVEKQIDE--EI--YRLENL------DLDSIEKLREDHLKKLKAKAKRNQE 55
Q+ + V + V K+ EI Y +EN DL +++ + L +K + E
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNV-LNFIKLQKIDIIE 1881
Query: 56 LKALGHGEYEEIPDEKKFF 74
L+ EE+ E F
Sbjct: 1882 LQKSLS--LEEV--EGHLF 1896
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 47.2 bits (112), Expect = 8e-07
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 128 QQGHGEYEEIPDEKKFFDLCKKSPN--MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFI 185
+ EE+ +F +L + +VVHF+ + C ++E M L K+ + F+
Sbjct: 8 EAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFV 67
Query: 186 KLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGF 222
KL E P ++E+ I +PT K+S D + G
Sbjct: 68 KLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGA 104
Score = 29.1 bits (65), Expect = 1.3
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 61 HGEYEEIPDEKKFFDLCKKSPN--MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLN 118
EE+ +F +L + +VVHF+ + C ++E M L K+ + F+KL
Sbjct: 11 VAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLE 70
Query: 119 VERAPFLTGQQG 130
E P ++ +
Sbjct: 71 AEGVPEVSEKYE 82
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 45.8 bits (109), Expect = 1e-06
Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 128 QQGHGEYEEIPDEKKFFDLCKKSPN--MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFI 185
HG ++I + F + + + +VV F K++ +L +K+ F+
Sbjct: 7 HHHHGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFL 66
Query: 186 KLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVG 221
+++V+ + +K +PT K G
Sbjct: 67 EVDVDDCQDVASECEVKSMPTFQFFKKGQKVGEFSG 102
Score = 27.7 bits (62), Expect = 2.6
Identities = 12/72 (16%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 61 HGEYEEIPDEKKFFDLCKKSPN--MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLN 118
HG ++I + F + + + +VV F K++ +L +K+ F++++
Sbjct: 10 HGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVD 69
Query: 119 VERAPFLTGQQG 130
V+ + +
Sbjct: 70 VDDCQDVASECE 81
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 45.0 bits (107), Expect = 2e-06
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 136 EIPDEKKFFDLCKKSPN--MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP 193
+ + F + + VV F G C + ++ K+ + F++++V +
Sbjct: 5 PVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQ 64
Query: 194 FLTERLRIKVIPTLTLVKDSVTKDYIVG 221
I PT ++ V D G
Sbjct: 65 GTAATNNISATPTFQFFRNKVRIDQYQG 92
Score = 27.7 bits (62), Expect = 1.9
Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 66 EIPDEKKFFDLCKKSPN--MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP 123
+ + F + + VV F G C + ++ K+ + F++++V +
Sbjct: 5 PVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQ 64
Query: 124 FLTGQQG 130
Sbjct: 65 GTAATNN 71
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 42.7 bits (101), Expect = 1e-05
Identities = 7/88 (7%), Positives = 29/88 (32%)
Query: 135 EEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPF 194
++ ++ +++ + C ++ + + + + I++ ++
Sbjct: 3 NTFKTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQE 62
Query: 195 LTERLRIKVIPTLTLVKDSVTKDYIVGF 222
+ R + PT+ L + F
Sbjct: 63 IAGRYAVFTGPTVLLFYNGKEILRESRF 90
Score = 31.5 bits (72), Expect = 0.092
Identities = 3/64 (4%), Positives = 23/64 (35%)
Query: 65 EEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPF 124
++ ++ +++ + C ++ + + + + I++ ++
Sbjct: 3 NTFKTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQE 62
Query: 125 LTGQ 128
+ G+
Sbjct: 63 IAGR 66
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 43.2 bits (102), Expect = 1e-05
Identities = 12/69 (17%), Positives = 28/69 (40%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212
++ +F + + + L + + F+ ++V+ + IK PT ++D
Sbjct: 49 VLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRD 108
Query: 213 SVTKDYIVG 221
D +VG
Sbjct: 109 GQQVDKLVG 117
Score = 29.4 bits (66), Expect = 0.89
Identities = 10/92 (10%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 43 LKKLKAKAKRNQELKALGHGEYEEIPDEKKFFDLCKKSPN----MVVHFYKDGSVNCKIL 98
L K A ++ L G I ++++ ++ ++ +F + +
Sbjct: 5 LAKRNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQI 64
Query: 99 DEHMKTLCKKHLETRFIKLNVERAPFLTGQQG 130
+ L + + F+ ++V+ +
Sbjct: 65 APYYIELSENYPSLMFLVIDVDELSDFSASWE 96
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 42.3 bits (100), Expect = 2e-05
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 136 EIPDEKKFFDLCKKSPN--MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP 193
+I + F + + + +VV F CK++ +L +K+ F++++V+
Sbjct: 4 QIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQ 63
Query: 194 FLTERLRIKVIPTLTLVKDSVTKDYIVG 221
+ +K +PT K G
Sbjct: 64 DVASESEVKSMPTFQFFKKGQKVGEFSG 91
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 42.4 bits (100), Expect = 2e-05
Identities = 18/83 (21%), Positives = 36/83 (43%)
Query: 140 EKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERL 199
+ + +V+ F C+I+ L KK F+K++V+ + E+
Sbjct: 24 TMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQF 83
Query: 200 RIKVIPTLTLVKDSVTKDYIVGF 222
++ +PT +K+ KD +VG
Sbjct: 84 SVEAMPTFLFMKEGDVKDRVVGA 106
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 41.5 bits (98), Expect = 3e-05
Identities = 22/92 (23%), Positives = 47/92 (51%)
Query: 131 HGEYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVE 190
+ ++ + +F +L K++ +V+ FY CK++ H+ L + + + RF+K +V+
Sbjct: 11 YTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVD 70
Query: 191 RAPFLTERLRIKVIPTLTLVKDSVTKDYIVGF 222
+P + + + +PT L KD I+G
Sbjct: 71 ESPDIAKECEVTAMPTFVLGKDGQLIGKIIGA 102
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 40.8 bits (96), Expect = 7e-05
Identities = 20/82 (24%), Positives = 34/82 (41%)
Query: 140 EKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERL 199
++ F +VV F CK++ L KK F+K++V+ + E
Sbjct: 16 KEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEW 75
Query: 200 RIKVIPTLTLVKDSVTKDYIVG 221
++ +PT +KD D VG
Sbjct: 76 NVEAMPTFIFLKDGKLVDKTVG 97
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 39.7 bits (93), Expect = 2e-04
Identities = 16/82 (19%), Positives = 32/82 (39%)
Query: 140 EKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERL 199
++ + +VV F C+ + L KK F+K++ + +
Sbjct: 28 NEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDW 87
Query: 200 RIKVIPTLTLVKDSVTKDYIVG 221
I+ +PT +K+ D +VG
Sbjct: 88 AIQAMPTFMFLKEGKILDKVVG 109
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 39.2 bits (92), Expect = 2e-04
Identities = 18/87 (20%), Positives = 39/87 (44%)
Query: 136 EIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFL 195
+ +F + +VV FY CK++ ++ +++ + F KL+V+ +
Sbjct: 10 QFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDV 69
Query: 196 TERLRIKVIPTLTLVKDSVTKDYIVGF 222
++ + +PTL L K+ +VG
Sbjct: 70 AQKNEVSAMPTLLLFKNGKEVAKVVGA 96
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 38.5 bits (90), Expect = 5e-04
Identities = 12/86 (13%), Positives = 37/86 (43%)
Query: 136 EIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFL 195
++ ++F ++ + V F CK ++ M+ + + +F K++ + +
Sbjct: 23 DVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEI 82
Query: 196 TERLRIKVIPTLTLVKDSVTKDYIVG 221
+ R+ +PT + + +++G
Sbjct: 83 VSKCRVLQLPTFIIARSGKMLGHVIG 108
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 38.1 bits (89), Expect = 5e-04
Identities = 18/86 (20%), Positives = 43/86 (50%)
Query: 136 EIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFL 195
+ + +F + ++ ++V F+ + CK + + K + + FIK++V+ +
Sbjct: 12 IVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEV 71
Query: 196 TERLRIKVIPTLTLVKDSVTKDYIVG 221
TE+ I +PT + K+ + D ++G
Sbjct: 72 TEKENITSMPTFKVYKNGSSVDTLLG 97
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 37.7 bits (88), Expect = 6e-04
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 165 CK----ILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIV 220
CK +LD+ + + ++ E P L + L + +PTL ++D
Sbjct: 34 CKNMEKVLDK----FGARAPQVAISSVDSEARPELMKELGFERVPTLVFIRDGKVAKVFS 89
Query: 221 GF 222
G
Sbjct: 90 GI 91
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 38.1 bits (89), Expect = 6e-04
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 165 CKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVG 221
C+++ KK F+K++V+ + E ++ +PT +KD D +VG
Sbjct: 43 CRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTFLFIKDGEKVDSVVG 99
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 37.8 bits (88), Expect = 0.001
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 165 CKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVG 221
C+ + KK F+K++V+ + E+ ++ +PT +KD D +VG
Sbjct: 51 CRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVG 107
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 37.5 bits (87), Expect = 0.001
Identities = 7/75 (9%), Positives = 27/75 (36%), Gaps = 10/75 (13%)
Query: 154 VVHFYKDGSVNCK----ILDEHMKTLCKKHLETRFI--KLNVERAPFLTERLRIKVIPTL 207
++ + ++ E L ++ + + ++E++ + +R ++ P
Sbjct: 40 LLSSDPRRTPEVSDNPVMIAE----LLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPAT 95
Query: 208 TLVKDSVTKDYIVGF 222
+ D + + G
Sbjct: 96 LVFTDGKLRGALSGI 110
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 36.5 bits (85), Expect = 0.002
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 165 CKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGF 222
C+ + ++ L K+ E F K++V++ + + +PT +KD D G
Sbjct: 34 CRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDGKEVDRFSGA 91
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 37.2 bits (86), Expect = 0.002
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 154 VVHFYKDGSVNCKILDEHMKTLCKKHLE-TRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212
V+ F +D C LD+ + + ++V++ T+ I IP+ +
Sbjct: 27 VLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFN 86
Query: 213 SVTKDYIVG 221
G
Sbjct: 87 GQHMKVDYG 95
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 36.7 bits (85), Expect = 0.003
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 7/61 (11%)
Query: 165 CK----ILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIV 220
C+ TL + R K++ + P + R RI+ IP L
Sbjct: 79 CRQMAPQFQAAAATLAGQ---VRLAKIDTQAHPAVAGRHRIQGIPAFILFHKGRELARAA 135
Query: 221 G 221
G
Sbjct: 136 G 136
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 36.3 bits (84), Expect = 0.004
Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 136 EIPDEKKFFDLCKKSPN--MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAP 193
E+ + + + N +V+ F C + E+ K + + ++V+ P
Sbjct: 24 ELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-YVTLVDIDVDIHP 82
Query: 194 FLTERLRIKVIPTLTLVKDSVTKDYIVG 221
L ++ IK +PT + + +V
Sbjct: 83 KLNDQHNIKALPTFEFYFNLNNEWVLVH 110
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 35.8 bits (83), Expect = 0.004
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 132 GEYEEIPDEKKFFDLCKKSPN--MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNV 189
E E+ + L ++ N +VV F+ CK + K L +K+ + F+K++V
Sbjct: 13 SELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDV 71
Query: 190 ERAPFLTERLRIKVIPTLTLVKDSVTKDYIVG 221
++ + I +PT +K+ +VG
Sbjct: 72 DKLEETARKYNISAMPTFIAIKNGEKVGDVVG 103
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 36.3 bits (84), Expect = 0.005
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 183 RFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVG 221
RF+K+N E P L+ R RI+ IPT+ L ++ D + G
Sbjct: 89 RFVKVNTEAEPALSTRFRIRSIPTIMLYRNGKMIDMLNG 127
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 35.4 bits (82), Expect = 0.007
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 183 RFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGF 222
+ +K+NV+ P L R ++ +PTL L + VG
Sbjct: 84 KVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVATWVGA 123
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 34.6 bits (80), Expect = 0.008
Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 165 CKILDEHMKTLCKKHLET--RFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGF 222
CK L + + + + + F+ ++ + ++E I +P ++ + G
Sbjct: 36 CKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFIIIHKGTILKELSGA 95
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 35.0 bits (81), Expect = 0.008
Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 131 HGEYEEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETR--FIKLN 188
G + I +F + +V+ F+ CK++ + + + F K++
Sbjct: 14 RGSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVD 73
Query: 189 VERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGF 222
V+ + + + I+ +PT K+ D +VG
Sbjct: 74 VDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGA 107
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 34.6 bits (80), Expect = 0.009
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 165 CKILDEHMKTLCKKHLETRFIKLNV-ERAPFLTERLRIKVIPTLTLVKDSVTKDYIVG 221
K + + L +++L+ F+KL+ + L + L I+V+PT ++K++ + G
Sbjct: 39 SKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTG 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 35.9 bits (83), Expect = 0.012
Identities = 15/78 (19%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 139 DEKKFFDLCKKSPNM--VVHFYKDGSVNCKILDEHMKTLCKKHLETRFI--KLNVERAPF 194
+E + ++S + +F+ + S +C L +++L ++ +FI KL+ +
Sbjct: 13 NESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQY-NGQFILAKLDCDAEQM 71
Query: 195 LTERLRIKVIPTLTLVKD 212
+ + ++ IPT+ L ++
Sbjct: 72 IAAQFGLRAIPTVYLFQN 89
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 34.3 bits (79), Expect = 0.013
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 165 CKILDEHMKTLCKKHLETRFIKLNV-ERAPFLTERLRIKVIPTLTLVKDSVTKDYIVG 221
CK + + L +++L+ F+KL+ + L + L I+V+PT ++K++ + G
Sbjct: 52 CKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTG 109
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 33.9 bits (78), Expect = 0.015
Identities = 11/57 (19%), Positives = 27/57 (47%)
Query: 165 CKILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVG 221
C+ L + + ++ + + + FIK++V++ + + IP L VK + +
Sbjct: 38 CQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVKKEGNEIKTLD 94
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 33.8 bits (78), Expect = 0.016
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 165 CK----ILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIV 220
C I++E L + + + F KLN + P + R + +PT+ KD D I+
Sbjct: 31 CLILAPIIEE----LAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDGEPVDEII 86
Query: 221 GFT 223
G
Sbjct: 87 GAV 89
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 33.1 bits (76), Expect = 0.028
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 184 FIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVG 221
F+K++V+ + E I +PT + KD V D +VG
Sbjct: 59 FLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVG 96
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 32.7 bits (75), Expect = 0.040
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 183 RFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELGNCADFSTEMLE 237
F ++VE L +R +K +P + KD K + G E ++LE
Sbjct: 56 GFYYVDVEEEKTLFQRFSLKGVPQILYFKDGEYKGKMAGDVEDDEVEQMIADVLE 110
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 32.2 bits (74), Expect = 0.049
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 165 CKILDEHMKTLCKKHLET-RFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVG 221
CK++ + L + + +K++V+ + I +PT +K+ V + G
Sbjct: 35 CKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAG 92
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD,
structural genomics, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 137
Score = 32.7 bits (74), Expect = 0.054
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 10/90 (11%)
Query: 139 DEKKFFDLCKKSPNMVVHFYKDGSVNCK-------ILDEHMKTLCKKHLETRFIKLNVER 191
DE D S +VV F++ +V +L E + + ++ E
Sbjct: 21 DEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR---LVAAEVAAEA 77
Query: 192 APFLTERLRIKVIPTLTLVKDSVTKDYIVG 221
L R + V P+L +V+ T I
Sbjct: 78 ERGLMARFGVAVCPSLAVVQPERTLGVIAK 107
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 32.8 bits (75), Expect = 0.059
Identities = 9/57 (15%), Positives = 19/57 (33%)
Query: 166 KILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGF 222
+ E + + + + A + ++ PTL K+ D +VG
Sbjct: 55 QASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYKEGRIVDKLVGA 111
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 33.3 bits (76), Expect = 0.067
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 139 DEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLET----RFIKLNVERAPF 194
++ F ++ + ++V FY +CK L + K+ + K++
Sbjct: 136 TKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETD 195
Query: 195 LTERLRIKVIPTLTLVKDSVTKDYIVGFTE 224
L +R + PTL + + DY +
Sbjct: 196 LAKRFDVSGYPTLKIFRKGRPYDYNGPREK 225
Score = 30.2 bits (68), Expect = 0.88
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 139 DEKKFFDLCKKSPNMVVHFYKDGSVNCKIL----DEHMKTLCKKHLETRFIKLNVERAPF 194
++ F + +++ FY +CK ++ L K K++ A
Sbjct: 21 NDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASV 80
Query: 195 LTERLRIKVIPTLTLVKDSVTKDYIVGFT 223
L R + PT+ ++K DY T
Sbjct: 81 LASRFDVSGYPTIKILKKGQAVDYEGSRT 109
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 31.9 bits (73), Expect = 0.072
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 183 RFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGF 222
+KL+V+ P + + IPTL + KD D +VGF
Sbjct: 53 DILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGF 92
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 32.0 bits (73), Expect = 0.083
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 165 CK----ILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIV 220
C +D+ K K+ +K+++++ L + +K +PT+ L+K+
Sbjct: 57 CTMQSTEMDKLQKYYGKR---IYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLARKD 113
Query: 221 GFT 223
F
Sbjct: 114 HFV 116
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 31.6 bits (72), Expect = 0.13
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 7/61 (11%)
Query: 165 CK----ILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIV 220
CK +E+ K F ++N+ P+ E+ ++ PT V
Sbjct: 39 CKAMEPYFEEYAKEYGSS---AVFGRINIATNPWTAEKYGVQGTPTFKFFCHGRPVWEQV 95
Query: 221 G 221
G
Sbjct: 96 G 96
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 30.7 bits (70), Expect = 0.17
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 183 RFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGF 222
+ +K++V+ + + IPTL ++KD + VGF
Sbjct: 51 KIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGF 90
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.9 bits (75), Expect = 0.18
Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 45/117 (38%)
Query: 219 IVGFTELGNCADFST--EM-------LEWRIAQA---GVIDYE-GDLFNPP--------- 256
+ GF E+G T EM LE + A G I Y G+L P
Sbjct: 822 VTGFAEVGPWGSARTRWEMEAFGEFSLEGCVEMAWIMGFISYHNGNLKGRPYTGWVDSKT 881
Query: 257 -------DIKKKQKKRMIEKKKIIRGRNSTGVIDYEAGVIDYEGDLFNPPDIKKKQK 306
D+K K + ++E +G+ E +LFN + +KK+
Sbjct: 882 KEPVDDKDVKAKYETSILEH----------------SGIRLIEPELFNGYNPEKKEM 922
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 30.7 bits (70), Expect = 0.18
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 186 KLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGF 222
KLNV+ P T + I IPTL L K ++G+
Sbjct: 54 KLNVDENPETTSQFGIMSIPTLILFKGGRPVKQLIGY 90
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 30.8 bits (70), Expect = 0.21
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 165 CK----ILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIV 220
C+ L+ K +KLN++ P + + IPTL + + IV
Sbjct: 38 CRQIAPSLEAIAAEYGDK---IEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAKTIV 94
Query: 221 GFT 223
G
Sbjct: 95 GAK 97
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 30.8 bits (70), Expect = 0.22
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 186 KLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGF 222
KL+V+ P ++ IPTL L KD IVG
Sbjct: 67 KLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGA 103
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 30.4 bits (69), Expect = 0.23
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 186 KLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGF 222
KL+V+ P R R+ IPT+ L KD + +VG
Sbjct: 55 KLDVDENPKTAMRYRVMSIPTVILFKDGQPVEVLVGA 91
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 30.3 bits (69), Expect = 0.23
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 186 KLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFT 223
K+NV+ P + I+ IPTL L K+ D +VG
Sbjct: 56 KVNVDENPNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQ 93
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 30.3 bits (69), Expect = 0.24
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 186 KLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGF 222
KLN + +P + I+ IPT+ + K + I+G
Sbjct: 56 KLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGA 92
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 30.4 bits (69), Expect = 0.25
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 183 RFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFT 223
F +LNV+ + ++ + IPT + + D +VG
Sbjct: 55 VFGRLNVDENQKIADKYSVLNIPTTLIFVNGQLVDSLVGAV 95
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP:
c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 30.3 bits (69), Expect = 0.27
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 183 RFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGF 222
KLN + AP + + I+ IPT+ K+ K+ I+G
Sbjct: 52 AVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGA 91
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 30.4 bits (69), Expect = 0.32
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 186 KLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVG 221
K++++ L + +PT+ +K+ D VG
Sbjct: 68 KVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVG 103
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 30.4 bits (69), Expect = 0.33
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 186 KLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVG 221
KL ++ P ++ +++ +P L LVK D G
Sbjct: 62 KLEIDPNPTTVKKYKVEGVPALRLVKGEQILDSTEG 97
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 29.9 bits (68), Expect = 0.33
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 183 RFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVG 221
K+N++ P +++ IPTL LV+D D VG
Sbjct: 54 TVAKVNIDDNPETPNAYQVRSIPTLMLVRDGKVIDKKVG 92
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 30.4 bits (69), Expect = 0.36
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 186 KLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVG 221
KLN+++ P + I+ IPTL L K+ VG
Sbjct: 77 KLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 112
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 29.9 bits (68), Expect = 0.36
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 186 KLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVG 221
KLN+++ P + I+ IPTL L K+ VG
Sbjct: 57 KLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 30.2 bits (68), Expect = 0.38
Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 25/147 (17%)
Query: 127 GQQGHGEYEEIPDEKKFFDLCKKSPNM--VVHFYKDGSVNCK----ILDEHMKTLCKKHL 180
G G Y + ++K + ++ + +V F+ + S +C+ I + L
Sbjct: 1 GSSGSSGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGL 60
Query: 181 ETRFIKLNVERAPFLTERLRI------KVIPTLTLVKDSVTKDYIVGFTELGNCADFSTE 234
F K++V R ++ R ++ K +PTL L + D
Sbjct: 61 --NFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQ-------IDKKGR 111
Query: 235 MLEWRIAQAGVIDYEGDLFNPPDIKKK 261
+ W ++ VI FN ++
Sbjct: 112 AVSWTFSEENVIRE----FNLNELSGP 134
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy,
IGE, conformational diversity, multispecficity,
redox-active center; 2.77A {Escherichia coli} SCOP:
c.47.1.1
Length = 123
Score = 30.1 bits (68), Expect = 0.38
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 160 DGSVNCK----ILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKDSVT 215
D CK ILDE K KLN+++ P + I+ IPTL L K+
Sbjct: 45 DLVGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 101
Query: 216 KDYIVG 221
VG
Sbjct: 102 AATKVG 107
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 30.0 bits (67), Expect = 0.43
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 154 VVHFYKDGSVNCKILDEHM-----KTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLT 208
++ F + G + C D + T + + +++ P L + PT
Sbjct: 22 LLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFV 81
Query: 209 LVKDSVTKDYIVGF 222
L+ V + G+
Sbjct: 82 LMAGDVESGRLEGY 95
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 30.2 bits (68), Expect = 0.48
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 183 RFIKLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVG 221
K+NV++ P L I+ IPT+ V +G
Sbjct: 85 YIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQVNMG 123
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 29.7 bits (67), Expect = 0.68
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 186 KLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGF 222
K++ E+ L I+ IP++ + + G
Sbjct: 75 KVDTEKEQELAGAFGIRSIPSILFIPMEGKPEMAQGA 111
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.74
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 25/51 (49%)
Query: 36 EKLREDHLKKLKAKAKRNQELKALGHGEYEEIPDEKKFFDLCKKSPNMVVH 86
EK LKKL+A LK Y D +P + +
Sbjct: 18 EK---QALKKLQAS------LKL-----YA--DDS---------APALAIK 43
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 29.8 bits (67), Expect = 0.87
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 186 KLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELGNCADFSTEMLEWRIAQAGV 245
KLN+++ P + I+ IPTL L K+ VG G +F L ++ V
Sbjct: 67 KLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLAGSAMESTV 126
Query: 246 I 246
+
Sbjct: 127 M 127
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.2 bits (65), Expect = 1.4
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 77 CKKSPNMVVHFYKDGSVNCK----ILDEHM 102
CK P +V + +G V C +L + +
Sbjct: 27 CKVYPPKIVERFSEGDVVCALCGLVLSDKL 56
Score = 29.2 bits (65), Expect = 1.4
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 147 CKKSPNMVVHFYKDGSVNCK----ILDEHM 172
CK P +V + +G V C +L + +
Sbjct: 27 CKVYPPKIVERFSEGDVVCALCGLVLSDKL 56
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 1.7
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 33 DSIEKLREDHLKKLKAK----AKRNQELKALGHGEYEE 66
+SI K RE+ K+L+ QE + + EE
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE 122
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 28.4 bits (63), Expect = 3.5
Identities = 8/88 (9%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 139 DEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLC--------KKHLETRFIKLNVE 190
+ K + ++ KK + + +++ + + + F ++ E
Sbjct: 19 NAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSE 78
Query: 191 RAPFLTERLRIKVIPTLTLVKDSVTKDY 218
+ + ++L + ++ + K+ +Y
Sbjct: 79 KDAAVAKKLGLTEEDSIYVFKEDEVIEY 106
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 27.7 bits (61), Expect = 3.9
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 51 KRNQELKALGHGEYEEI---PDEKKFFDLCKKSPNMV-VHFYKDGSVNCKILDEHMKTL- 105
K + + L G ++I ++ +KS + V + + + L +
Sbjct: 11 KEKRPPQTLSRGWGDDITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNE 70
Query: 106 -CKKHLETRFIKLNVERAPFLTGQQGHGEY 134
++ + +FI LN+ G+Y
Sbjct: 71 EIQEMAQNKFIMLNLMHETTDKNLSPDGQY 100
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide
triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Length = 528
Score = 28.2 bits (62), Expect = 4.6
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 2/96 (2%)
Query: 24 IYRLENLDLDSIEKLREDHLKKLKAKAKRNQELKALGHGEYEEIPDEKKFFDLCKKSPNM 83
+ + I++ + L K A AK L E + + + +K+P
Sbjct: 359 VGETQPTGQIKIKREDYESLPKEVASAKPKVLLDVKLKAEDFIVDVINMDYGMQEKNPID 418
Query: 84 VVHFY-KDGSVNC-KILDEHMKTLCKKHLETRFIKL 117
V FY K +I + L + + I++
Sbjct: 419 HVSFYCKTAPNRAIRITKNQVSQLLPEKFAEQLIRV 454
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 26.5 bits (59), Expect = 4.6
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 7/52 (13%)
Query: 165 CK----ILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLTLVKD 212
C +++E + +NV P I +PT+ + D
Sbjct: 17 CPAAKRVVEEVANEMPDA---VEVEYINVMENPQKAMEYGIMAVPTIVINGD 65
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 27.8 bits (61), Expect = 6.3
Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Query: 141 KKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLET-RFIKLNVERAPFLTERL 199
+ K +V FY S ++L K + + ++ + +
Sbjct: 554 NELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQYHSFCTQE 613
Query: 200 RIKVIPTLTLVKDSVTKDY 218
++ P + +K Y
Sbjct: 614 NVQRYPEIRFYPQKSSKAY 632
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote
structural genomics, structural genomics consortium,
SGC, U function; 1.73A {Plasmodium yoelii}
Length = 160
Score = 26.7 bits (58), Expect = 8.8
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 153 MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKL-NVERAPFLTERLRIKVIPTL 207
+ + F D +C +DE + + I L ++ P + ++
Sbjct: 44 VCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSV 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.137 0.399
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,446,177
Number of extensions: 349820
Number of successful extensions: 987
Number of sequences better than 10.0: 1
Number of HSP's gapped: 950
Number of HSP's successfully gapped: 131
Length of query: 332
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 238
Effective length of database: 4,077,219
Effective search space: 970378122
Effective search space used: 970378122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.7 bits)