RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6451
(332 letters)
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 82.0 bits (202), Expect = 6e-19
Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 5/122 (4%)
Query: 129 QGHGEYEEIPDEKKFFDLCKKSPN---MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFI 185
+G E+ ++F + +K +VV+ Y+DG C L+ ++ L ++ +F
Sbjct: 96 PRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFC 155
Query: 186 KLNVERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTELGNCADFSTEMLEWRIAQAGV 245
K+ +R V+PTL + K + E DF +E + + G+
Sbjct: 156 KIRASNTG-AGDRFSSDVLPTLLVYKGGELISNFISVAEQFA-EDFFAADVESFLNEYGL 213
Query: 246 ID 247
+
Sbjct: 214 LP 215
Score = 55.8 bits (134), Expect = 9e-10
Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 8/107 (7%)
Query: 21 DEEIYRLENLDLDSIEKLREDHLKKLKAKAKRNQELKALGHGEYEEIPDEKKFFDLCKKS 80
+ E+ + D + K R ++ + K +G E+ ++F + +K
Sbjct: 63 EYELIHQDKEDEGCLRKYRRQCMQDMHQKLSFGPR-----YGFVYELETGEQFLETIEKE 117
Query: 81 PN---MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPF 124
+VV+ Y+DG C L+ ++ L ++ +F K+
Sbjct: 118 QKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTGA 164
>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 103
Score = 40.6 bits (94), Expect = 2e-05
Identities = 18/90 (20%), Positives = 45/90 (50%)
Query: 135 EEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPF 194
+ + + +F + ++ ++V F+ + CK + + K + + FIK++V+
Sbjct: 3 KIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSE 62
Query: 195 LTERLRIKVIPTLTLVKDSVTKDYIVGFTE 224
+TE+ I +PT + K+ + D ++G +
Sbjct: 63 VTEKENITSMPTFKVYKNGSSVDTLLGAND 92
Score = 25.5 bits (55), Expect = 3.7
Identities = 11/64 (17%), Positives = 31/64 (48%)
Query: 65 EEIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPF 124
+ + + +F + ++ ++V F+ + CK + + K + + FIK++V+
Sbjct: 3 KIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSE 62
Query: 125 LTGQ 128
+T +
Sbjct: 63 VTEK 66
>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 105
Score = 39.0 bits (90), Expect = 1e-04
Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 135 EEIPDEKKFFDLCKKSPN--MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA 192
++I + F + + + +VV F CK++ +L +K+ F++++V+
Sbjct: 3 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDC 62
Query: 193 PFLTERLRIKVIPTLTLVKDSVTKDYIVGFTE 224
+ +K +PT K G +
Sbjct: 63 QDVASECEVKCMPTFQFFKKGQKVGEFSGANK 94
Score = 25.9 bits (56), Expect = 3.3
Identities = 11/68 (16%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 65 EEIPDEKKFFDLCKKSPN--MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA 122
++I + F + + + +VV F CK++ +L +K+ F++++V+
Sbjct: 3 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDC 62
Query: 123 PFLTGQQG 130
+ +
Sbjct: 63 QDVASECE 70
>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus
tremula), thioredoxin H [TaxId: 113636]}
Length = 113
Score = 39.0 bits (90), Expect = 1e-04
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 141 KKFFDLCKKSPNMV-VHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERL 199
K+ F+ K S ++ V F CK++ L KK F+K++V+ + E
Sbjct: 16 KEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEW 75
Query: 200 RIKVIPTLTLVKDSVTKDYIVGFTE 224
++ +PT +KD D VG +
Sbjct: 76 NVEAMPTFIFLKDGKLVDKTVGADK 100
>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius,
formerly Bacillus acidocaldarius [TaxId: 405212]}
Length = 105
Score = 38.6 bits (89), Expect = 1e-04
Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Query: 139 DEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLET-RFIKLNVERAPFLTE 197
+ F + ++V F+ C+++ ++ + H + KLNV+ P T
Sbjct: 6 TDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTS 65
Query: 198 RLRIKVIPTLTLVKDSVTKDYIVGFTELGNCADFSTEMLE 237
+ I IPTL L K ++G+ ++L+
Sbjct: 66 QFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVLQ 105
>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId:
5691]}
Length = 113
Score = 37.5 bits (86), Expect = 4e-04
Identities = 12/87 (13%), Positives = 37/87 (42%)
Query: 136 EIPDEKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFL 195
++ ++F ++ + V F CK ++ M+ + + +F K++ + +
Sbjct: 12 DVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEI 71
Query: 196 TERLRIKVIPTLTLVKDSVTKDYIVGF 222
+ R+ +PT + + +++G
Sbjct: 72 VSKCRVLQLPTFIIARSGKMLGHVIGA 98
>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 37.0 bits (85), Expect = 4e-04
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 2/92 (2%)
Query: 135 EEIPDEKKFFDLCKKSPN--MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERA 192
+ + + F + + VV F G C + ++ K+ + F++++V +
Sbjct: 4 KPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQC 63
Query: 193 PFLTERLRIKVIPTLTLVKDSVTKDYIVGFTE 224
I PT ++ V D G
Sbjct: 64 QGTAATNNISATPTFQFFRNKVRIDQYQGADA 95
>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin F [TaxId: 3562]}
Length = 112
Score = 35.5 bits (81), Expect = 0.002
Identities = 20/96 (20%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 132 GEYEEIPDEKKFFDLCKKSPN--MVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNV 189
G+ E+ ++ F+ + K + + +V+ + CK + + L +++L+ F+KL+
Sbjct: 6 GKVTEV-NKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDC 64
Query: 190 -ERAPFLTERLRIKVIPTLTLVKDSVTKDYIVGFTE 224
+ L + L I+V+PT ++K++ + G
Sbjct: 65 NQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKY 100
>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 112
Score = 30.9 bits (69), Expect = 0.066
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 140 EKKFFDLCKKSPNMVVHFYKDGSV-NCKILDEHMKTLCKKHLETRFIKLNVERAPFLTER 198
+ + ++ +VV F I + F+K++V+ + E
Sbjct: 14 DAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEA 73
Query: 199 LRIKVIPTLTLVKDSVTKDYIVGFTE 224
I +PT + KD V D +VG ++
Sbjct: 74 AGITAMPTFHVYKDGVKADDLVGASQ 99
>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 114
Score = 31.0 bits (69), Expect = 0.076
Identities = 16/85 (18%), Positives = 33/85 (38%)
Query: 140 EKKFFDLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLETRFIKLNVERAPFLTERL 199
++ + +VV F C+ + L KK F+K++ + +
Sbjct: 18 NEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDW 77
Query: 200 RIKVIPTLTLVKDSVTKDYIVGFTE 224
I+ +PT +K+ D +VG +
Sbjct: 78 AIQAMPTFMFLKEGKILDKVVGAKK 102
>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 30.2 bits (67), Expect = 0.15
Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 4/87 (4%)
Query: 139 DEKKFFDLCKKSPNMVVHFYKD----GSVNCKILDEHMKTLCKKHLETRFIKLNVERAPF 194
+ F + ++V FY + L + E R K++
Sbjct: 13 RKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESD 72
Query: 195 LTERLRIKVIPTLTLVKDSVTKDYIVG 221
L ++ ++ PT+ ++ T
Sbjct: 73 LAQQYGVRGYPTIKFFRNGDTASPKEY 99
>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE
{Salmonella typhimurium [TaxId: 90371]}
Length = 119
Score = 29.2 bits (65), Expect = 0.28
Identities = 6/89 (6%), Positives = 30/89 (33%), Gaps = 6/89 (6%)
Query: 153 MVVHFYKDGSVNCK----ILDEHMKTLCKKHLETRFIKLNVERAPFLTERLRIKVIPTLT 208
+++ + ++ E ++ + + ++E++ + +R ++ P
Sbjct: 33 ILLSSDPRRTPEVSDNPVMIAELLREF--PQFDWQVAVADLEQSEAIGDRFNVRRFPATL 90
Query: 209 LVKDSVTKDYIVGFTELGNCADFSTEMLE 237
+ D + + G +++
Sbjct: 91 VFTDGKLRGALSGIHPWAELLTLMRSIVD 119
>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId:
1167]}
Length = 108
Score = 26.7 bits (58), Expect = 2.1
Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 145 DLCKKSPNMVVHFYKDGSVNCKILDEHMKTLCKKHLET-RFIKLNVERAPFLTERLRIKV 203
++ K ++V+F+ C+++ + + + + +KL ++ P ++ +++
Sbjct: 15 EVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEG 74
Query: 204 IPTLTLVKDSVTKDYIVGFTELGNCADFSTEML 236
+P L LVK D G F L
Sbjct: 75 VPALRLVKGEQILDSTEGVISKDKLLSFLDTHL 107
>d1fiua_ c.52.1.10 (A:) Restriction endonuclease NgoIV {Neisseria
gonorrhoeae [TaxId: 485]}
Length = 286
Score = 26.8 bits (59), Expect = 4.1
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 22 EEIYRLENLDLDSIEKLREDHLKKLKAKAKRNQELKALGHGEYEEIPD 69
+++ L++ ++ HL L A+ N EL A +Y PD
Sbjct: 95 KQVGSRNRLEIARYQQYA--HLTALAKAAEENPELAAALGSDYTITPD 140
>d1jnda1 c.1.8.5 (A:2-278,A:371-420) Imaginal disc growth factor-2
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 327
Score = 26.3 bits (57), Expect = 5.6
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 20 IDEEIYRLENLDLDS-IEKLREDHLKKLKAKAKRNQELKALGHGEYEEIPDEKKFFDLCK 78
+ E + +++ + I K + + LK K + L ++G + K+ DL +
Sbjct: 42 LRGENLQAYSMNENLDIYKHQFSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLE 101
Query: 79 KSPNMVVHFYK 89
+ F +
Sbjct: 102 GEKVRQIGFIR 112
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 26.3 bits (56), Expect = 6.0
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 8 TVLNVAKNVEKQIDEEIYRLENLDLDS--IEKLRED--HLKKL 46
LNV+ N ++ RLE L + ++ E +LK+L
Sbjct: 287 EELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQL 329
>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus
halodurans [TaxId: 86665]}
Length = 224
Score = 26.0 bits (57), Expect = 6.2
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 29 NLDLDSI---EKLREDHLKKLKAKAKRNQELKALGH 61
++ LD+ K +++KL KAK+ E +GH
Sbjct: 155 SIFLDNTHSSRKEVIKNMRKLAKKAKQGSEPIGIGH 190
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 26.2 bits (57), Expect = 6.4
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 22 EEIYRLENLDLDSIEKLRE--DHLKKLKAKAKRNQELKALGHGEYEEIPDEKK 72
+ E L + + + D +++ A+R +L Y E+P +
Sbjct: 302 RAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEA 354
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.137 0.399
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,373,211
Number of extensions: 72585
Number of successful extensions: 280
Number of sequences better than 10.0: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 45
Length of query: 332
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 246
Effective length of database: 1,226,816
Effective search space: 301796736
Effective search space used: 301796736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.6 bits)