BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6452
(594 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELD 313
KLTNLT L+L+HN Q + + + KLTNL LDLS+N+L LP+ F LK+L
Sbjct: 131 KLTNLTYLNLAHNQLQSL---PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187
Query: 314 ISHNNFESMP 323
+ N +S+P
Sbjct: 188 LYQNQLKSVP 197
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 16/139 (11%)
Query: 455 MSNVSQLKYLKNIKYLNCSNDIDHRKS--QDFVNV---------LWELPLSIL-YLSSIQ 502
+ +V ++YL N++YL + H S ++ N+ L LP + L++++
Sbjct: 53 IKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112
Query: 503 ELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKLTML 560
EL L QL +P+ + L L LN++HN++ LP+ F L +L LD+SYN+L L
Sbjct: 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172
Query: 561 PDGFVMLSNLTTFYAQRKY 579
P+G + LT R Y
Sbjct: 173 PEG--VFDKLTQLKDLRLY 189
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 22/208 (10%)
Query: 243 HQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD 302
+ DI VQ Q L N+ L L N DI+ ++E LTNL L L+ N+L LP+
Sbjct: 50 NSDIKSVQGI--QYLPNVRYLALGGNKLHDISALKE-----LTNLTYLILTGNQLQSLPN 102
Query: 303 --FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFC 360
F LKEL + N +S+P + ++ Y + ++HN +S+P +
Sbjct: 103 GVFDKLTNLKELVLVENQLQSLPDGV-FDKLTNLTYLN----LAHNQLQSLPKGVFDKLT 157
Query: 361 KLVKLDISHNQIKILHKP---RCTHTLQTFSMNHNIGMKIPEWFWYQ----EFLCLKELN 413
L +LD+S+NQ++ L + + T L+ + N +P+ + + +++ L +
Sbjct: 158 NLTELDLSYNQLQSLPEGVFDKLTQ-LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216
Query: 414 MSSTDPFFEHLPIWLLNHMELKENGVFS 441
T P +L W+ H + N S
Sbjct: 217 WDCTCPGIRYLSEWINKHSGVVRNSAGS 244
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 197 GFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFT----VNLSHQDINFVQES 252
G +LQ+ N K+TN ++ L++ +L D T +NL+H + + +
Sbjct: 94 GNQLQSLPNGVFDKLTNLKELV--LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151
Query: 253 MSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD 302
+ KLTNLT LDLS+N Q + E + KLT L L L N+L +PD
Sbjct: 152 VFDKLTNLTELDLSYNQLQSL---PEGVFDKLTQLKDLRLYQNQLKSVPD 198
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 486 NVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FA 542
N L LP + L+++ L+L++ QL +P+ + L L +L++S+N++ LPE F
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178
Query: 543 NLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYW 580
L LK L + N+L +PDG F L++L + W
Sbjct: 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 153/374 (40%), Gaps = 54/374 (14%)
Query: 239 VNLSHQDINFVQE-SMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+N+S ++F + S KL +L VLDLS N+ N V +S L L +S NK+
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190
Query: 298 SELPDFLNFKVLKELDISHNNFES-MPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQ 356
S D L+ LD+S NNF + +P H+ DIS N S
Sbjct: 191 SGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHL-------DISGNKL-SGDFSRA 242
Query: 357 VHFCKLVK-LDISHNQIKILHKPRCTHTLQTFSMNHN-IGMKIPEWFWYQEFLCLKELNM 414
+ C +K L+IS NQ P +LQ S+ N +IP+ F L L++
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPD-FLSGACDTLTGLDL 301
Query: 415 S------STDPFF-----------------EHLPI-WLLNHMELKENGVFSNLISLHMQN 450
S + PFF LP+ LL LK + N S +
Sbjct: 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361
Query: 451 TAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWEL-----------PLSILYLS 499
+ ++N+S ++ N S I Q+ N L EL P ++ S
Sbjct: 362 S---LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418
Query: 500 SIQELHLS-NVQLNCIPEDIGNLICLEKLNISHNKV-YKLPESFANLKSLKILDVSYNKL 557
+ LHLS N IP +G+L L L + N + ++P+ +K+L+ L + +N L
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478
Query: 558 TM-LPDGFVMLSNL 570
T +P G +NL
Sbjct: 479 TGEIPSGLSNCTNL 492
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 514 IPEDIGNLICLEKLNISHNKVY-KLPESFANLKSLKILDVSYNKL-TMLPDGFVMLSNLT 571
IP++IG++ L LN+ HN + +P+ +L+ L ILD+S NKL +P L+ LT
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 153/374 (40%), Gaps = 54/374 (14%)
Query: 239 VNLSHQDINFVQE-SMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+N+S ++F + S KL +L VLDLS N+ N V +S L L +S NK+
Sbjct: 128 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 187
Query: 298 SELPDFLNFKVLKELDISHNNFES-MPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQ 356
S D L+ LD+S NNF + +P H+ DIS N S
Sbjct: 188 SGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHL-------DISGNKL-SGDFSRA 239
Query: 357 VHFCKLVK-LDISHNQIKILHKPRCTHTLQTFSMNHN-IGMKIPEWFWYQEFLCLKELNM 414
+ C +K L+IS NQ P +LQ S+ N +IP+ F L L++
Sbjct: 240 ISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPD-FLSGACDTLTGLDL 298
Query: 415 S------STDPFF-----------------EHLPI-WLLNHMELKENGVFSNLISLHMQN 450
S + PFF LP+ LL LK + N S +
Sbjct: 299 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 358
Query: 451 TAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWEL-----------PLSILYLS 499
+ ++N+S ++ N S I Q+ N L EL P ++ S
Sbjct: 359 S---LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 415
Query: 500 SIQELHLS-NVQLNCIPEDIGNLICLEKLNISHNKV-YKLPESFANLKSLKILDVSYNKL 557
+ LHLS N IP +G+L L L + N + ++P+ +K+L+ L + +N L
Sbjct: 416 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 475
Query: 558 TM-LPDGFVMLSNL 570
T +P G +NL
Sbjct: 476 TGEIPSGLSNCTNL 489
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 514 IPEDIGNLICLEKLNISHNKVY-KLPESFANLKSLKILDVSYNKL-TMLPDGFVMLSNLT 571
IP++IG++ L LN+ HN + +P+ +L+ L ILD+S NKL +P L+ LT
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 30/168 (17%)
Query: 243 HQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD 302
+ DI VQ Q L N+ L L N DI+ ++E LTNL L L+ N+L LP+
Sbjct: 50 NSDIKSVQGI--QYLPNVRYLALGGNKLHDISALKE-----LTNLTYLILTGNQLQSLPN 102
Query: 303 --FLNFKVLKELDISHNNFESMP------LCLQVHFYVHIPYKHSQSDISHNNFESMPLC 354
F LKEL + N +S+P L + Y++ HN +S+P
Sbjct: 103 GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLY-----------HNQLQSLPKG 151
Query: 355 LQVHFCKLVKLDISHNQIKILHKP---RCTHTLQTFSMNHNIGMKIPE 399
+ L +LD+ +NQ++ L + + T L+ S+N N +P+
Sbjct: 152 VFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQ-LKQLSLNDNQLKSVPD 198
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 14/123 (11%)
Query: 455 MSNVSQLKYLKNIKYLNCSNDIDHRKS--QDFVNV---------LWELPLSIL-YLSSIQ 502
+ +V ++YL N++YL + H S ++ N+ L LP + L++++
Sbjct: 53 IKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112
Query: 503 ELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKLTML 560
EL L QL +P+ + L L L + HN++ LP+ F L +L LD+ N+L L
Sbjct: 113 ELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSL 172
Query: 561 PDG 563
P+G
Sbjct: 173 PEG 175
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 486 NVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FA 542
N L LP + L+++ L+L + QL +P+ + L L +L++ +N++ LPE F
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFD 178
Query: 543 NLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYW 580
L LK L ++ N+L +PDG F L++LT + W
Sbjct: 179 KLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPW 217
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 197 GFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFT----VNLSHQDINFVQES 252
G +LQ+ N K+TN ++ L++ +L D T + L H + + +
Sbjct: 94 GNQLQSLPNGVFDKLTNLKELV--LVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKG 151
Query: 253 MSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD 302
+ KLTNLT LDL +N Q + E + KLT L L L+ N+L +PD
Sbjct: 152 VFDKLTNLTRLDLDNNQLQSL---PEGVFDKLTQLKQLSLNDNQLKSVPD 198
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 486 NVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANL 544
N+L+ L+ L + + +L+L +L + D G L L L++SHN++ LP L
Sbjct: 41 NLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTL 99
Query: 545 KSLKILDVSYNKLTMLPDG 563
+L +LDVS+N+LT LP G
Sbjct: 100 PALTVLDVSFNRLTSLPLG 118
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDIS 344
T L L+L +L++L VL LD+SHN +S+PL Q + + D+S
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV------LDVS 108
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHT--LQTFSMNHNIGMKIP 398
N S+PL +L +L + N++K L T T L+ S+ +N ++P
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 486 NVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLIC-LEKLNISHNKVYKLPESFAN 543
N L LPL L L +QEL+L +L +P + LEKL++++N + +LP N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169
Query: 544 -LKSLKILDVSYNKLTMLPDGF 564
L++L L + N L +P GF
Sbjct: 170 GLENLDTLLLQENSLYTIPKGF 191
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 486 NVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANL 544
N+L+ L+ L + + +L+L +L + D G L L L++SHN++ LP L
Sbjct: 41 NLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTL 99
Query: 545 KSLKILDVSYNKLTMLPDG 563
+L +LDVS+N+LT LP G
Sbjct: 100 PALTVLDVSFNRLTSLPLG 118
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDIS 344
T L L+L +L++L VL LD+SHN +S+PL Q + + D+S
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV------LDVS 108
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHT--LQTFSMNHNIGMKIP 398
N S+PL +L +L + N++K L T T L+ S+ +N ++P
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 486 NVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLIC-LEKLNISHNKVYKLPESFAN 543
N L LPL L L +QEL+L +L +P + LEKL++++N + +LP N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169
Query: 544 -LKSLKILDVSYNKLTMLPDGF 564
L++L L + N L +P GF
Sbjct: 170 GLENLDTLLLQENSLYTIPKGF 191
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 504 LHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDG 563
L LSN+Q+ I +I L +L ++ N + +LP NL +L++LD+S+N+LT LP
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE 288
Query: 564 FVMLSNLTTFY 574
L FY
Sbjct: 289 LGSCFQLKYFY 299
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 287 LIVLDLSHNKLSELP-DFLNFKVLKELDISHNNFESMPL----CLQVHFY 331
L L L+ N L+ELP + N L+ LD+SHN S+P C Q+ ++
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 282 QKLTNLIVLDLSHNKLSELP 301
+ L+NL VLDLSHN+L+ LP
Sbjct: 267 KNLSNLRVLDLSHNRLTSLP 286
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 486 NVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANL 544
N+L+ L+ L + + +L+L +L + D G L L L++SHN++ LP L
Sbjct: 41 NLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTL 99
Query: 545 KSLKILDVSYNKLTMLPDG 563
+L +LDVS+N+LT LP G
Sbjct: 100 PALTVLDVSFNRLTSLPLG 118
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDIS 344
T L L+L +L++L VL LD+SHN +S+PL Q + + D+S
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV------LDVS 108
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHT--LQTFSMNHNIGMKIP 398
N S+PL +L +L + N++K L T T L+ S+ +N ++P
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 486 NVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLIC-LEKLNISHNKVYKLPESFAN 543
N L LPL L L +QEL+L +L +P + LEKL++++N + +LP N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169
Query: 544 -LKSLKILDVSYNKLTMLPDGF 564
L++L L + N L +P GF
Sbjct: 170 GLENLDTLLLQENSLYTIPKGF 191
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 149/359 (41%), Gaps = 91/359 (25%)
Query: 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSH 294
+I +NL+H + + + + + L +LD N I+ ++ + Q L L VL+L H
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFN---SISKLEPELCQILPLLKVLNLQH 82
Query: 295 NKLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNF 348
N+LS++ D F+ L ELD+ N+ +H P+K+ ++ D+SHN
Sbjct: 83 NELSQISDQTFVFCTNLTELDLMSNS---------IHKIKSNPFKNQKNLIKLDLSHNGL 133
Query: 349 ESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFL- 407
S L V L +L ++ N+I L EFL
Sbjct: 134 SSTKLGTGVQLENLQELLLAKNKILALRSEEL------------------------EFLG 169
Query: 408 --CLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLK 465
L++L++SS +P E P G F + L A++ N +QL
Sbjct: 170 NSSLRKLDLSS-NPLKEFSP------------GCFQTIGKLF-----ALLLNNAQLN--- 208
Query: 466 NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLIC-- 523
H + + WEL +SIQ L L+N QL E + +
Sbjct: 209 -----------PHLTEK----LCWELS-----NTSIQNLSLANNQLLATSESTFSGLKWT 248
Query: 524 -LEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTML-PDGFVMLSNLTTFYAQRKY 579
L +L++S+N ++ + SF+ L SL+ L + YN + L P F LSNL +R +
Sbjct: 249 NLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAF 307
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 249 VQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSEL 300
+ S + L NLT+LDLS+NN +IN E + + L NL +LD HN L+ L
Sbjct: 471 ISPSPFRPLRNLTILDLSNNNIANIN---EDLLEGLENLEILDFQHNNLARL 519
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 16/92 (17%)
Query: 231 KQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNN----------HQDINFVQESM 280
+ ++ ++LS+ +I + E + + L NL +LD HNN +NF+
Sbjct: 477 RPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFL---- 532
Query: 281 SQKLTNLIVLDLSHNKLSELPDFLNFKVLKEL 312
+ L++L +L+L N L E+P + FK L EL
Sbjct: 533 -KGLSHLHILNLESNGLDEIPVGV-FKNLFEL 562
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 125/287 (43%), Gaps = 62/287 (21%)
Query: 290 LDLSHNKLSELPDFLNFKVLKELDISHNNFESMP-LCLQVHFYVHIPYKHSQSDISHNNF 348
L +S+N+L +LP+ N LK +D+ +N+ + +P L + F +N
Sbjct: 136 LGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA----------AGNNQL 185
Query: 349 ESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEW-------F 401
E +P + F + D +N +K L P +L++ +NI ++PE
Sbjct: 186 EELPELQNLPFLTAIYAD--NNSLKKL--PDLPLSLESIVAGNNILEELPELQNLPFLTT 241
Query: 402 WYQEFLCLKELNMSSTDPFFEHLPI---WLLNHMELKENGVFSNLISLHMQNTAAVMSNV 458
Y + LK L P E L + +L + EL ++ F ++ + + S +
Sbjct: 242 IYADNNLLKTL--PDLPPSLEALNVRDNYLTDLPELPQSLTFLDV-------SENIFSGL 292
Query: 459 SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSN---VQLNCIP 515
S+L N+ YLN S+ + + L +LP S++EL++SN ++L +P
Sbjct: 293 SELP--PNLYYLNASS--------NEIRSLCDLP------PSLEELNVSNNKLIELPALP 336
Query: 516 EDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPD 562
+ LI S N + ++PE NLK L V YN L PD
Sbjct: 337 PRLERLIA------SFNHLAEVPELPQNLKQLH---VEYNPLREFPD 374
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 486 NVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANL 544
N+L+ L+ L + + +L+L +L + D G L L L++SHN++ LP L
Sbjct: 41 NLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTL 99
Query: 545 KSLKILDVSYNKLTMLPDG 563
+L +LDVS+N+LT LP G
Sbjct: 100 PALTVLDVSFNRLTSLPLG 118
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDIS 344
T L L+L +L++L VL LD+SHN +S+PL Q + + D+S
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV------LDVS 108
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHT--LQTFSMNHNIGMKIP 398
N S+PL +L +L + N++K L T T L+ S+ +N ++P
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 486 NVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLIC-LEKLNISHNKVYKLPESFAN 543
N L LPL L L +QEL+L +L +P + LEKL++++N++ +LP N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
Query: 544 -LKSLKILDVSYNKLTMLPDGF 564
L++L L + N L +P GF
Sbjct: 170 GLENLDTLLLQENSLYTIPKGF 191
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 486 NVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANL 544
N+L+ L+ L + + +L+L +L + D G L L L++SHN++ LP L
Sbjct: 41 NLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTL 99
Query: 545 KSLKILDVSYNKLTMLPDG 563
+L +LDVS+N+LT LP G
Sbjct: 100 PALTVLDVSFNRLTSLPLG 118
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDIS 344
T L L+L +L++L VL LD+SHN +S+PL Q + + D+S
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV------LDVS 108
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHT--LQTFSMNHNIGMKIP 398
N S+PL +L +L + N++K L T T L+ S+ +N ++P
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELP 164
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 486 NVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLIC-LEKLNISHNKVYKLPESFAN 543
N L LPL L L +QEL+L +L +P + LEKL++++N + +LP N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLN 169
Query: 544 -LKSLKILDVSYNKLTMLPDGF 564
L++L L + N L +P GF
Sbjct: 170 GLENLDTLLLQENSLYTIPKGF 191
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 486 NVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANL 544
N+L+ L+ L + + +L+L +L + D G L L L++SHN++ LP L
Sbjct: 41 NLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTL 99
Query: 545 KSLKILDVSYNKLTMLPDG 563
+L +LDVS+N+LT LP G
Sbjct: 100 PALTVLDVSFNRLTSLPLG 118
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDIS 344
T L L+L +L++L VL LD+SHN +S+PL Q + + D+S
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV------LDVS 108
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHT--LQTFSMNHNIGMKIP 398
N S+PL +L +L + N++K L T T L+ S+ +N ++P
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 486 NVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLIC-LEKLNISHNKVYKLPESFAN 543
N L LPL L L +QEL+L +L +P + LEKL++++N++ +LP N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
Query: 544 -LKSLKILDVSYNKLTMLPDGF 564
L++L L + N L +P GF
Sbjct: 170 GLENLDTLLLQENSLYTIPKGF 191
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 486 NVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANL 544
N+L+ L+ L + + +L+L +L + D G L L L++SHN++ LP L
Sbjct: 41 NLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTL 99
Query: 545 KSLKILDVSYNKLTMLPDG 563
+L +LDVS+N+LT LP G
Sbjct: 100 PALTVLDVSFNRLTSLPLG 118
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDIS 344
T L L+L +L++L VL LD+SHN +S+PL Q + + D+S
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV------LDVS 108
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHT--LQTFSMNHNIGMKIP 398
N S+PL +L +L + N++K L T T L+ S+ +N ++P
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 486 NVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLIC-LEKLNISHNKVYKLPESFAN 543
N L LPL L L +QEL+L +L +P + LEKL++++N + +LP N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169
Query: 544 -LKSLKILDVSYNKLTMLPDGF 564
L++L L + N L +P GF
Sbjct: 170 GLENLDTLLLQENSLYTIPKGF 191
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 486 NVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANL 544
N+L+ L+ L + + +L+L +L + D G L L L++SHN++ LP L
Sbjct: 41 NLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTL 99
Query: 545 KSLKILDVSYNKLTMLPDG 563
+L +LDVS+N+LT LP G
Sbjct: 100 PALTVLDVSFNRLTSLPLG 118
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDIS 344
T L L+L +L++L VL LD+SHN +S+PL Q + + D+S
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV------LDVS 108
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHT--LQTFSMNHNIGMKIP 398
N S+PL +L +L + N++K L T T L+ S+ +N ++P
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 486 NVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLIC-LEKLNISHNKVYKLPESFAN 543
N L LPL L L +QEL+L +L +P + LEKL++++N++ +LP N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
Query: 544 -LKSLKILDVSYNKLTMLPDGF 564
L++L L + N L +P GF
Sbjct: 170 GLENLDTLLLQENSLYTIPKGF 191
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 486 NVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANL 544
N+L+ L+ L + + +L+L +L + D G L L L++SHN++ LP L
Sbjct: 42 NLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTL 100
Query: 545 KSLKILDVSYNKLTMLPDG 563
+L +LDVS+N+LT LP G
Sbjct: 101 PALTVLDVSFNRLTSLPLG 119
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDIS 344
T L L+L +L++L VL LD+SHN +S+PL Q + + D+S
Sbjct: 56 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV------LDVS 109
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHT--LQTFSMNHNIGMKIP 398
N S+PL +L +L + N++K L T T L+ S+ +N ++P
Sbjct: 110 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 165
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 486 NVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLIC-LEKLNISHNKVYKLPESFAN 543
N L LPL L L +QEL+L +L +P + LEKL++++N + +LP N
Sbjct: 111 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 170
Query: 544 -LKSLKILDVSYNKLTMLPDGF 564
L++L L + N L +P GF
Sbjct: 171 GLENLDTLLLQENSLYTIPKGF 192
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 486 NVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANL 544
N+L+ L+ L + + +L+L +L + D G L L L++SHN++ LP L
Sbjct: 41 NLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTL 99
Query: 545 KSLKILDVSYNKLTMLPDG 563
+L +LDVS+N+LT LP G
Sbjct: 100 PALTVLDVSFNRLTSLPLG 118
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDIS 344
T L L+L +L++L VL LD+SHN +S+PL Q + + D+S
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV------LDVS 108
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHT--LQTFSMNHNIGMKIP 398
N S+PL +L +L + N++K L T T L+ S+ +N ++P
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 486 NVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLIC-LEKLNISHNKVYKLPESFAN 543
N L LPL L L +QEL+L +L +P + LEKL++++N++ +LP N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
Query: 544 -LKSLKILDVSYNKLTMLPDGF 564
L++L L + N L +P GF
Sbjct: 170 GLENLDTLLLQENSLYTIPKGF 191
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
Query: 232 QYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLD 291
+Y + ++++ I+ ++ + QKL L VL+L HN ++ + LT L ++
Sbjct: 57 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 116
Query: 292 LSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESM 351
S K+ P F+ K L LD+SHN S L QV S + I E +
Sbjct: 117 NSIQKIKNNP-FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 175
Query: 352 PLCLQVHFCKLVKLDISHNQIKILHKPRCTHTL 384
+ L KL++S NQIK P C H +
Sbjct: 176 DIFAN---SSLKKLELSSNQIKEF-SPGCFHAI 204
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 21/109 (19%)
Query: 285 TNLIVLDLSHNKLSELP--DFLNFKVLKELDISHNNFESM--PLCLQVHFYVHIPYKHSQ 340
TN+ VL+L+HN+L LP +F + L LD+ N + LC ++ + +H++
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 341 -SDISHNNFESMPLCLQVH-------------FCK---LVKLDISHNQI 372
S +S F ++H F K L+ LD+SHN +
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 143
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 216 DIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINF 275
D++ I L + D+ + L+ +IN + ++ LT+L L+LS N +
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF---LGS 337
Query: 276 VQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNFESMP 323
+ M + L L VLDLS+N + L D FL LKEL + N +S+P
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 497 YLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSY 554
+ + +++L L+ ++N I ++ L L KLN+S N + + F NL L++LD+SY
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356
Query: 555 NKLTMLPD-GFVMLSNL 570
N + L D F+ L NL
Sbjct: 357 NHIRALGDQSFLGLPNL 373
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 520 NLICLEKLNISHNKVYKLP-ESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQR 577
NL LE L++S+N + L +SF L +LK L + N+L +PDG F L++L +
Sbjct: 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404
Query: 578 KYW 580
W
Sbjct: 405 NPW 407
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 236 IFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN 295
+ +NLS + + M + L L VLDLS+N+ I + + L NL L L N
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH---IRALGDQSFLGLPNLKELALDTN 381
Query: 296 KLSELPD 302
+L +PD
Sbjct: 382 QLKSVPD 388
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
Query: 232 QYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLD 291
+Y + ++++ I+ ++ + QKL L VL+L HN ++ + LT L ++
Sbjct: 52 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 111
Query: 292 LSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESM 351
S K+ P F+ K L LD+SHN S L QV S + I E +
Sbjct: 112 NSIQKIKNNP-FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 170
Query: 352 PLCLQVHFCKLVKLDISHNQIKILHKPRCTHTL 384
+ L KL++S NQIK P C H +
Sbjct: 171 DIFAN---SSLKKLELSSNQIKEF-SPGCFHAI 199
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 21/109 (19%)
Query: 285 TNLIVLDLSHNKLSELP--DFLNFKVLKELDISHNNFESM--PLCLQVHFYVHIPYKHSQ 340
TN+ VL+L+HN+L LP +F + L LD+ N + LC ++ + +H++
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 341 -SDISHNNFESMPLCLQVH-------------FCK---LVKLDISHNQI 372
S +S F ++H F K L+ LD+SHN +
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 138
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 498 LSSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKV--YKLPESFANLKSLKILDVSY 554
LSS+Q+L L + IG+L L++LN++HN + +KLPE F+NL +L+ LD+S
Sbjct: 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182
Query: 555 NKL 557
NK+
Sbjct: 183 NKI 185
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLS 293
++ +++SH + L++L VL ++ N+ Q+ NF+ + ++ L NL LDLS
Sbjct: 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-NFLPDIFTE-LRNLTFLDLS 502
Query: 294 HNKLSELP--DFLNFKVLKELDISHNNFESM 322
+L +L F + L+ L++SHNNF S+
Sbjct: 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 533
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDL 292
+ ++ ++LS +I +++ Q L++L+ L L+ N Q + S L L+ ++
Sbjct: 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134
Query: 293 SHNKLSELPDFLNFKVLKELDISHNNFESMPL 324
+ L P + K LKEL+++HN +S L
Sbjct: 135 NLASLENFP-IGHLKTLKELNVAHNLIQSFKL 165
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 27/154 (17%)
Query: 429 LNHMELKENGVF---SNLISLHM-------QNTAAVMSNVSQLKYLKNIKYLNCSNDIDH 478
L +++L NGV SN + L + MS S L+N+ YL+ S+
Sbjct: 399 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 458
Query: 479 RKSQDFVNVLWELPLSILYLSSIQE---------------LHLSNVQLNCI-PEDIGNLI 522
N L L + + +S QE L LS QL + P +L
Sbjct: 459 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 518
Query: 523 CLEKLNISHNKVYKLPE-SFANLKSLKILDVSYN 555
L+ LN+SHN + L + L SL++LD S N
Sbjct: 519 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 498 LSSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKV--YKLPESFANLKSLKILDVSY 554
LSS+Q+L L + IG+L L++LN++HN + +KLPE F+NL +L+ LD+S
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 555 NKL 557
NK+
Sbjct: 159 NKI 161
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLS 293
++ +++SH + L++L VL ++ N+ Q+ NF+ + ++ L NL LDLS
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-NFLPDIFTE-LRNLTFLDLS 478
Query: 294 HNKLSELP--DFLNFKVLKELDISHNNFESM 322
+L +L F + L+ L++SHNNF S+
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDL 292
+ ++ ++LS +I +++ Q L++L+ L L+ N Q + S L L+ ++
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 293 SHNKLSELPDFLNFKVLKELDISHNNFESMPL 324
+ L P + K LKEL+++HN +S L
Sbjct: 111 NLASLENFP-IGHLKTLKELNVAHNLIQSFKL 141
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 27/154 (17%)
Query: 429 LNHMELKENGVF---SNLISLHM-------QNTAAVMSNVSQLKYLKNIKYLNCSNDIDH 478
L +++L NGV SN + L + MS S L+N+ YL+ S+
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 479 RKSQDFVNVLWELPLSILYLSSIQE---------------LHLSNVQLNCI-PEDIGNLI 522
N L L + + +S QE L LS QL + P +L
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 523 CLEKLNISHNKVYKLPE-SFANLKSLKILDVSYN 555
L+ LN+SHN + L + L SL++LD S N
Sbjct: 495 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
Query: 232 QYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLD 291
+Y + ++++ I+ ++ + QKL L VL+L HN ++ + LT L ++
Sbjct: 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106
Query: 292 LSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESM 351
S K+ P F+ K L LD+SHN S L QV S + I E +
Sbjct: 107 NSIQKIKNNP-FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165
Query: 352 PLCLQVHFCKLVKLDISHNQIKILHKPRCTHTL 384
+ L KL++S NQIK P C H +
Sbjct: 166 DIFAN---SSLKKLELSSNQIKEF-SPGCFHAI 194
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 21/109 (19%)
Query: 285 TNLIVLDLSHNKLSELP--DFLNFKVLKELDISHNNFESM--PLCLQVHFYVHIPYKHSQ 340
TN+ VL+L+HN+L LP +F + L LD+ N + LC ++ + +H++
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 341 -SDISHNNFESMPLCLQVH-------------FCK---LVKLDISHNQI 372
S +S F ++H F K L+ LD+SHN +
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 498 LSSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKV--YKLPESFANLKSLKILDVSY 554
LSS+Q+L L + IG+L L++LN++HN + +KLPE F+NL +L+ LD+S
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 555 NKL 557
NK+
Sbjct: 159 NKI 161
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 24/166 (14%)
Query: 429 LNHMELKENGVF---SNLISLHM-------QNTAAVMSNVSQLKYLKNIKYLNCSNDIDH 478
L +++L NGV SN + L + MS S L+N+ YL DI H
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL----DISH 430
Query: 479 RKSQDFVNVLWELPLSILYLSSIQELHLSN--VQLNCIPEDIGNLICLEKLNISHNKVYK 536
++ N ++ LSS++ L ++ Q N +P+ L L L++S ++ +
Sbjct: 431 THTRVAFNGIFN------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484
Query: 537 L-PESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYW 580
L P +F +L SL++L+++ N+L +PDG F L++L + W
Sbjct: 485 LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDL 292
+ ++ ++LS +I +++ Q L++L+ L L+ N Q + S L L+ ++
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 293 SHNKLSELPDFLNFKVLKELDISHNNFESMPL 324
+ L P + K LKEL+++HN +S L
Sbjct: 111 NLASLENFP-IGHLKTLKELNVAHNLIQSFKL 141
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 498 LSSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKV--YKLPESFANLKSLKILDVSY 554
LSS+Q+L L + IG+L L++LN++HN + +KLPE F+NL +L+ LD+S
Sbjct: 100 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
Query: 555 NKL 557
NK+
Sbjct: 160 NKI 162
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDL 292
+ ++ ++LS +I +++ Q L++L+ L L+ N Q + S L L+ ++
Sbjct: 52 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 111
Query: 293 SHNKLSELPDFLNFKVLKELDISHNNFESMPL 324
+ L P + K LKEL+++HN +S L
Sbjct: 112 NLASLENFP-IGHLKTLKELNVAHNLIQSFKL 142
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 498 LSSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKV--YKLPESFANLKSLKILDVSY 554
LSS+Q+L L + IG+L L++LN++HN + +KLPE F+NL +L+ LD+S
Sbjct: 101 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
Query: 555 NKL 557
NK+
Sbjct: 161 NKI 163
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDL 292
+ ++ ++LS +I +++ Q L++L+ L L+ N Q + S L L+ ++
Sbjct: 53 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 112
Query: 293 SHNKLSELPDFLNFKVLKELDISHNNFESMPL 324
+ L P + K LKEL+++HN +S L
Sbjct: 113 NLASLENFP-IGHLKTLKELNVAHNLIQSFKL 143
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 498 LSSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKV--YKLPESFANLKSLKILDVSY 554
LSS+Q+L L + IG+L L++LN++HN + +KLPE F+NL +L+ LD+S
Sbjct: 100 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
Query: 555 NKL 557
NK+
Sbjct: 160 NKI 162
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDL 292
+ ++ ++LS +I +++ Q L++L+ L L+ N Q + S L L+ ++
Sbjct: 52 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 111
Query: 293 SHNKLSELPDFLNFKVLKELDISHNNFESMPL 324
+ L P + K LKEL+++HN +S L
Sbjct: 112 NLASLENFP-IGHLKTLKELNVAHNLIQSFKL 142
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 492 PLSILYLSSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKVY--KLPESFANLKSLK 548
P S L+S++ L +L + IG LI L+KLN++HN ++ KLP F+NL +L
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 151
Query: 549 ILDVSYN 555
+D+SYN
Sbjct: 152 HVDLSYN 158
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 492 PLSILYLSSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKVY--KLPESFANLKSLK 548
P S L+S++ L +L + IG LI L+KLN++HN ++ KLP F+NL +L
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 549 ILDVSYN 555
+D+SYN
Sbjct: 157 HVDLSYN 163
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 498 LSSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKV--YKLPESFANLKSLKILDVSY 554
LSS+Q+L L + IG+L L++LN++HN + +KLPE F+NL +L+ LD+S
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 555 NKL 557
NK+
Sbjct: 159 NKI 161
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDL 292
+ ++ ++LS +I +++ Q L++L+ L L+ N Q + S L L+ ++
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 293 SHNKLSELPDFLNFKVLKELDISHNNFESMPL 324
+ L P + K LKEL+++HN +S L
Sbjct: 111 NLASLENFP-IGHLKTLKELNVAHNLIQSFKL 141
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 498 LSSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKV--YKLPESFANLKSLKILDVSY 554
LSS+Q+L L + IG+L L++LN++HN + +KLPE F+NL +L+ LD+S
Sbjct: 101 LSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
Query: 555 NKL 557
NK+
Sbjct: 161 NKI 163
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDL 292
+ ++ ++LS +I +++ Q L++L+ L L+ N Q + S L L+ L+
Sbjct: 53 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALET 112
Query: 293 SHNKLSELPDFLNFKVLKELDISHNNFESMPL 324
+ L P + K LKEL+++HN +S L
Sbjct: 113 NLASLENFP-IGHLKTLKELNVAHNLIQSFKL 143
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELD 313
KLT LT L LS N I + + + KLT L +L L NKL LP+ F LKEL
Sbjct: 50 KLTQLTKLSLSQNQ---IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106
Query: 314 ISHNNFESMP 323
+ N +S+P
Sbjct: 107 LDTNQLKSVP 116
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 499 SSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNK 556
SS L L + +L +P + L L KL++S N++ LP+ F L L IL + NK
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 557 LTMLPDG 563
L LP+G
Sbjct: 88 LQSLPNG 94
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 486 NVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FA 542
N L LP + L+ + +L LS Q+ +P+ + L L L + NK+ LP F
Sbjct: 38 NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFD 97
Query: 543 NLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYW 580
L LK L + N+L +PDG F L++L + W
Sbjct: 98 KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 209 TKVTNAMDIAMELIDTELNCCNKQYHDIF-------TVNLSHQDINFVQESMSQKLTNLT 261
T V + + ++ E N H +F ++LS I + + + KLT LT
Sbjct: 20 TSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79
Query: 262 VLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFL 304
+L L N Q + + KLT L L L N+L +PD +
Sbjct: 80 ILYLHENKLQSL---PNGVFDKLTQLKELALDTNQLKSVPDGI 119
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 111/249 (44%), Gaps = 44/249 (17%)
Query: 149 TEALSTRTFCDHELQSIEDDIL---VQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDN 205
T L+T + ++ L+ IEDD L+ L + +N+ +VD + L + +
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL------THVDLSLIPSLFHANV 193
Query: 206 DQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDL 265
N T A+ IA+E +D SH IN V+ ++ LT+L L
Sbjct: 194 SYNLLSTLAIPIAVEELDA-----------------SHNSINVVRGPVN---VELTILKL 233
Query: 266 SHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSEL--PDFLNFKVLKELDISHNNFESMP 323
HNN D ++ L+ +DLS+N+L ++ F+ + L+ L IS+N ++
Sbjct: 234 QHNNLTDTAWL-----LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 288
Query: 324 LCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHT 383
L Q IP D+SHN+ + Q F +L L + HN I L K HT
Sbjct: 289 LYGQP-----IP-TLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTL-KLSTHHT 340
Query: 384 LQTFSMNHN 392
L+ +++HN
Sbjct: 341 LKNLTLSHN 349
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 239 VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
+NLS I V+ + Q L VLD+S+NN +S S L L L +S NKL
Sbjct: 415 LNLSSTGIRVVKTCIPQ---TLEVLDVSNNN-------LDSFSLFLPRLQELYISRNKLK 464
Query: 299 ELPDFLNFKVLKELDISHNNFESMP 323
LPD F VL + IS N +S+P
Sbjct: 465 TLPDASLFPVLLVMKISRNQLKSVP 489
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 88/224 (39%), Gaps = 30/224 (13%)
Query: 239 VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
+ + + + V S SQ L +L LDLS N + + +L L LS N L
Sbjct: 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374
Query: 299 ELPD----FLNFKVLKELDISHNNFESMPLCLQ----VHFY-----------VHIPYKHS 339
+ L K L LDIS N F MP Q + F IP
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLE 434
Query: 340 QSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPE 399
D+S+NN +S L L +L +L IS N++K L L ++ N +P+
Sbjct: 435 VLDVSNNNLDSFSLFLP----RLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPD 490
Query: 400 WFWYQEFLCLKELNMSS-----TDPFFEHLPIWLLNHMELKENG 438
+ L+++ + + + P ++L W LN KE G
Sbjct: 491 GI-FDRLTSLQKIWLHTNPWDCSCPRIDYLSRW-LNKNSQKEQG 532
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 485 VNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDIGN-LICLEKLNISHNKVYKLPES-F 541
N L LP + L+S+ +L+L +L +P + N L L LN+S N++ LP F
Sbjct: 37 TNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96
Query: 542 ANLKSLKILDVSYNKLTMLPDG 563
L LK L ++ N+L LPDG
Sbjct: 97 DKLTQLKELALNTNQLQSLPDG 118
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELD 313
KLT+LT L+LS N Q + + KLT L L L+ N+L LPD F LK+L
Sbjct: 74 KLTSLTYLNLSTNQLQSL---PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130
Query: 314 ISHNNFESMP 323
+ N +S+P
Sbjct: 131 LYQNQLKSVP 140
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELD 313
+LT+LT L L N Q + + KLT+L L+LS N+L LP+ F LKEL
Sbjct: 50 ELTSLTQLYLGGNKLQSL---PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106
Query: 314 ISHNNFESMP 323
++ N +S+P
Sbjct: 107 LNTNQLQSLP 116
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 486 NVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FA 542
N L LP + L+S+ L+LS QL +P + L L++L ++ N++ LP+ F
Sbjct: 62 NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD 121
Query: 543 NLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYW 580
L LK L + N+L +PDG F L++L + W
Sbjct: 122 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNI 529
+CS SQ +V +P YL L L +P + L L +L +
Sbjct: 6 SCSGTTVECYSQGRTSVPTGIPAQTTYL------DLETNSLKSLPNGVFDELTSLTQLYL 59
Query: 530 SHNKVYKLPES-FANLKSLKILDVSYNKLTMLPDG 563
NK+ LP F L SL L++S N+L LP+G
Sbjct: 60 GGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 486 NVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPE-SFA 542
N L LPL + +L+ + +L+L QL +P + L L++L ++ N++ +P +F
Sbjct: 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
Query: 543 NLKSLKILDVSYNKLTMLPDG-FVMLSNLTTF 573
L +L+ L +S N+L +P G F L L T
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 10/141 (7%)
Query: 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSH 294
D ++L + + ++ + LT LT L+L +N Q ++ + LT L L L++
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS---AGVFDDLTELGTLGLAN 92
Query: 295 NKLSELP--DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMP 352
N+L+ LP F + L +L + N +S+P K + ++ N +S+P
Sbjct: 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLP-----SGVFDRLTKLKELRLNTNQLQSIP 147
Query: 353 LCLQVHFCKLVKLDISHNQIK 373
L L +S NQ++
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQ 168
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 486 NVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPE-SFA 542
N L LPL + +L+ + +L+L QL +P + L L++L ++ N++ +P +F
Sbjct: 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
Query: 543 NLKSLKILDVSYNKLTMLPDG-FVMLSNLTTF 573
L +L+ L +S N+L +P G F L L T
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 10/141 (7%)
Query: 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSH 294
D ++L + + ++ + LT LT L+L +N Q ++ + LT L L L++
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS---AGVFDDLTELGTLGLAN 92
Query: 295 NKLSELP--DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMP 352
N+L+ LP F + L +L + N +S+P K + ++ N +S+P
Sbjct: 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLP-----SGVFDRLTKLKELRLNTNQLQSIP 147
Query: 353 LCLQVHFCKLVKLDISHNQIK 373
L L +S NQ++
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQ 168
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 239 VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
+N+S I+ + S L+ L +L +SHN Q ++ +Q+L LDLSHNKL
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE---YLDLSHNKLV 82
Query: 299 ELPDFLNFKVLKELDISHNNFESMPLC 325
++ LK LD+S N F+++P+C
Sbjct: 83 KISCHPTVN-LKHLDLSFNAFDALPIC 108
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 506 LSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDG-F 564
L++ C+P I + L++ NK+ +P+ L++L+ L+V+ N+L +PDG F
Sbjct: 411 LTDTIFRCLPPRI------KVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIF 464
Query: 565 VMLSNLTTFYAQRKYW 580
L++L + W
Sbjct: 465 DRLTSLQKIWLHTNPW 480
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 18/121 (14%)
Query: 237 FTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNK 296
F V+ S + V + +SQK T +L++S N ++ + + +S L+ L +L +SHN+
Sbjct: 3 FLVDRSKNGLIHVPKDLSQKTT---ILNISQNYISEL-WTSDILS--LSKLRILIISHNR 56
Query: 297 LSELPDFLNFKV---LKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPL 353
+ L D FK L+ LD+SHN +++ + + KH D+S N F+++P+
Sbjct: 57 IQYL-DISVFKFNQELEYLDLSHNKL------VKISCHPTVNLKHL--DLSFNAFDALPI 107
Query: 354 C 354
C
Sbjct: 108 C 108
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 112/249 (44%), Gaps = 44/249 (17%)
Query: 149 TEALSTRTFCDHELQSIEDDIL---VQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDN 205
T L+T + ++ L+ IEDD L+ L + +N+ + +++ P L + +
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR----LTHVDLSLIPS--LFHANV 199
Query: 206 DQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDL 265
N T A+ IA+E +D SH IN V+ ++ LT+L L
Sbjct: 200 SYNLLSTLAIPIAVEELDA-----------------SHNSINVVRGPVN---VELTILKL 239
Query: 266 SHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSEL--PDFLNFKVLKELDISHNNFESMP 323
HNN D ++ L+ +DLS+N+L ++ F+ + L+ L IS+N ++
Sbjct: 240 QHNNLTDTAWL-----LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 294
Query: 324 LCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHT 383
L Q IP D+SHN+ + Q F +L L + HN I L K HT
Sbjct: 295 LYGQP-----IPTLKV-LDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTL-KLSTHHT 346
Query: 384 LQTFSMNHN 392
L+ +++HN
Sbjct: 347 LKNLTLSHN 355
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 239 VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
+NLS I V+ + Q L VLD+S+NN +S S L L L +S NKL
Sbjct: 441 LNLSSTGIRVVKTCIPQ---TLEVLDVSNNN-------LDSFSLFLPRLQELYISRNKLK 490
Query: 299 ELPDFLNFKVLKELDISHNNFESMP 323
LPD F VL + I+ N +S+P
Sbjct: 491 TLPDASLFPVLLVMKIASNQLKSVP 515
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 87/224 (38%), Gaps = 30/224 (13%)
Query: 239 VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
+ + + + V S SQ L +L LDLS N + + +L L LS N L
Sbjct: 341 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 400
Query: 299 ELPD----FLNFKVLKELDISHNNFESMPLCLQ----VHFY-----------VHIPYKHS 339
+ L K L LDIS N F MP Q + F IP
Sbjct: 401 SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLE 460
Query: 340 QSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPE 399
D+S+NN +S L L +L +L IS N++K L L + N +P+
Sbjct: 461 VLDVSNNNLDSFSLFLP----RLQELYISRNKLKTLPDASLFPVLLVMKIASNQLKSVPD 516
Query: 400 WFWYQEFLCLKELNMSS-----TDPFFEHLPIWLLNHMELKENG 438
+ L+++ + + + P ++L W LN KE G
Sbjct: 517 GI-FDRLTSLQKIWLHTNPWDCSCPRIDYLSRW-LNKNSQKEQG 558
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 241 LSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSEL 300
L DI+F+ E L VL LSHN + ++F +Q L LD+SHN+L +
Sbjct: 67 LRMPDISFLSE--------LRVLRLSHNRIRSLDFHVFLFNQDLE---YLDVSHNRLQNI 115
Query: 301 PDFLNFKVLKELDISHNNFESMPLC 325
L+ LD+S N+F+ +P+C
Sbjct: 116 -SCCPMASLRHLDLSFNDFDVLPVC 139
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 489 WELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLK 548
W + +L LSS L+ C+P + + L++ +N++ +P+ +L++L+
Sbjct: 426 WAESILVLNLSSNM---LTGSVFRCLPPKV------KVLDLHNNRIMSIPKDVTHLQALQ 476
Query: 549 ILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYW 580
L+V+ N+L +PDG F L++L + W
Sbjct: 477 ELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 486 NVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPESFAN 543
N L LP+ + L+ + L L QL +P + L+ L++L + NK+ +LP
Sbjct: 74 NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIER 133
Query: 544 LKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYW 580
L L L + N+L +P G F LS+LT Y W
Sbjct: 134 LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 246 INFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--F 303
I ++ + L NL L L N + + + LT L VLDL N+L+ LP F
Sbjct: 52 ITKLEPGVFDSLINLKELYLGSNQ---LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF 108
Query: 304 LNFKVLKELDISHNNFESMPLCLQ-VHFYVHIPYKHSQ-SDISHNNFESM 351
LKEL + N +P ++ + H+ +Q I H F+ +
Sbjct: 109 DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 32/152 (21%)
Query: 239 VNLSHQDINFVQ-ESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
++LSH +++ ++ E +LTNL L LSHN+ +NF+ + NL LDLS N L
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH---LNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 298 SELPDFLNFKVLKELD-----------ISHNNFESMPLCLQVHFYVHIPYKHSQSDISHN 346
L +FL F L+ L+ + N FE M +++ +S N
Sbjct: 101 HTLDEFL-FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY-------------LSQN 146
Query: 347 NFESMPLCLQVHFCKLVK---LDISHNQIKIL 375
P+ L KL K LD+S N++K L
Sbjct: 147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 13/100 (13%)
Query: 466 NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLE 525
N++YL+ S++ H + + L L + +LY + H+ V N ED+ L +
Sbjct: 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN-----HIVVVDRNAF-EDMAQL---Q 139
Query: 526 KLNISHNKVYKLP----ESFANLKSLKILDVSYNKLTMLP 561
KL +S N++ + P + L L +LD+S NKL LP
Sbjct: 140 KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 486 NVLWELPLSILYLSSIQELHLSNV-QLNCIPEDIG---------NLICLEKLNISHNKVY 535
N L LP SI L+ ++EL + +L +PE + L+ L+ L + +
Sbjct: 137 NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196
Query: 536 KLPESFANLKSLKILDVSYNKLTML 560
LP S ANL++LK L + + L+ L
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLSAL 221
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 488 LWELP-LSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVY-KLPESFANLK 545
L LP L+ LY+ I L + IP I L L L I+H V +P+ + +K
Sbjct: 72 LANLPYLNFLYIGGINNL------VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 546 SLKILDVSYNKLT-MLPDGFVMLSNLT--TFYAQR 577
+L LD SYN L+ LP L NL TF R
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 494 SILYLS--SIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYK-LPESFANLKSLKIL 550
S+L+ S + Q++HL+ L +G L L++ +N++Y LP+ LK L L
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
Query: 551 DVSYNKLTM-LPDGFVMLSNLTTFYAQRK 578
+VS+N L +P G + + YA K
Sbjct: 274 NVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 498 LSSIQELHLSNVQLNCI-PEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYN 555
L ++EL LS +L+ I P L L KL + H +V + +F +LKSL+ L++S+N
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 556 KLTMLP-DGFVMLSNLTTFYAQRKYW 580
L LP D F L L + W
Sbjct: 237 NLMSLPHDLFTPLHRLERVHLNHNPW 262
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 25/175 (14%)
Query: 219 MELIDTELNCCNKQYHDIFT----VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDIN 274
+EL D L Q + + + L + I + ++ +L LDL + +
Sbjct: 88 LELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE--LKRLE 145
Query: 275 FVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESM-PLCLQ------ 327
++ E+ + L NL L+L L ++P+ L+EL++S N + + P Q
Sbjct: 146 YISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLR 205
Query: 328 ----VHFYVHIPYKHSQSD--------ISHNNFESMPLCLQVHFCKLVKLDISHN 370
+H V +++ D +SHNN S+P L +L ++ ++HN
Sbjct: 206 KLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLS 293
++ +++SH + L++L VL ++ N+ Q+ NF+ + ++ L NL LDLS
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-NFLPDIFTE-LRNLTFLDLS 183
Query: 294 HNKLSELP--DFLNFKVLKELDISHNNFESM 322
+L +L F + L+ L++SHNNF S+
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP-DFLNFKVLKELDI 314
KLT LT L LS N +S T+L LDLS N + + +FL + L+ LD
Sbjct: 50 KLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 108
Query: 315 SHNNFESMP-----LCLQVHFYVHIPYKHSQ 340
H+N + M L L+ Y+ I + H++
Sbjct: 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 27/154 (17%)
Query: 429 LNHMELKENGVF---SNLISLHM-------QNTAAVMSNVSQLKYLKNIKYLNCSNDIDH 478
L +++L NGV SN + L + MS S L+N+ YL+ S+
Sbjct: 80 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139
Query: 479 RKSQDFVNVLWELPLSILYLSSIQE---------------LHLSNVQLNCI-PEDIGNLI 522
N L L + + +S QE L LS QL + P +L
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199
Query: 523 CLEKLNISHNKVYKLPE-SFANLKSLKILDVSYN 555
L+ LN+SHN + L + L SL++LD S N
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 498 LSSIQELHLSNVQLNCI-PEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYN 555
L ++EL LS +L+ I P L L KL + H +V + +F +LKSL+ L++S+N
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 556 KLTMLP-DGFVMLSNLTTFYAQRKYW 580
L LP D F L L + W
Sbjct: 237 NLMSLPHDLFTPLHRLERVHLNHNPW 262
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 105/262 (40%), Gaps = 39/262 (14%)
Query: 153 STRTFC-DHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFK-------LQNND 204
++R C EL + I V L++ N S+ V RT FK LQ +
Sbjct: 16 ASRVICTRRELAEVPASIPVNTRYLNLQEN-------SIQVIRTDTFKHLRHLEILQLSK 68
Query: 205 NDQNTKVTNAMDI-----AMELIDTELNCCNKQYHDIFT----VNLSHQDINFVQESMSQ 255
N A + +EL D L Q + + + L + I +
Sbjct: 69 NLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFN 128
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDIS 315
++ +L LDL + + ++ E+ + L NL L+L L ++P+ L+EL++S
Sbjct: 129 RVPSLRRLDLGE--LKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELS 186
Query: 316 HNNFESM-PLCLQ-VHFYVHIPYKHSQ-SDISHNNFESMPLCLQVHFCKLVKLDISHNQI 372
N + + P Q + + H+Q + I N F+ + L +L++SHN +
Sbjct: 187 GNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLK--------SLEELNLSHNNL 238
Query: 373 KILHKPRCT--HTLQTFSMNHN 392
L T H L+ +NHN
Sbjct: 239 MSLPHDLFTPLHRLERVHLNHN 260
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 239 VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
+ ++ +I + + + LT L H + I V + + L NL L LS N +S
Sbjct: 176 IRIADTNITTIPQGLPPSLTEL------HLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 299 ELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQ--SDISHNNF 348
+ + N L+EL +++N +P L H Y+ + Y H+ S I N+F
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 239 VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
+ ++ +I + + + LT L H + I V + + L NL L LS N +S
Sbjct: 176 IRIADTNITTIPQGLPPSLTEL------HLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 299 ELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQ--SDISHNNF 348
+ + N L+EL +++N +P L H Y+ + Y H+ S I N+F
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 507 SNVQLNCIPEDIGNLICLEKLNISHNKVYKLP-ESFANLKSLKILDVSYNKLTMLPDG-F 564
S+ +L IP +I +KL++ NK+ LP ++F L L++L ++ NKL LP G F
Sbjct: 24 SSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81
Query: 565 VMLSNLTTFYAQRKYWMFLTISLLCYLMGL 594
L NL T + L I + L+ L
Sbjct: 82 KELKNLETLWVTDNKLQALPIGVFDQLVNL 111
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 486 NVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPE-SFA 542
N L LP + L+ + L L +L +P+ + L L++L + +N++ ++PE +F
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178
Query: 543 NLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYW 580
L LK L + N+L +P+G F L L Q W
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 486 NVLWELPLSILY-LSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FA 542
N L LP I L +++ L +++ +L +P + L+ L +L + N++ LP F
Sbjct: 71 NKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD 130
Query: 543 NLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKY 579
+L L L + YN+L LP G + LT+ R Y
Sbjct: 131 SLTKLTYLSLGYNELQSLPKG--VFDKLTSLKELRLY 165
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 12/130 (9%)
Query: 290 LDLSHNKLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNN 347
LDL NKLS LP F L+ L ++ N +++P + + + ++ N
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP----AGIFKELKNLETLW-VTDNK 96
Query: 348 FESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQT---FSMNHNIGMKIPEWFWYQ 404
+++P+ + L +L + NQ+K L PR +L S+ +N +P+ +
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSLP-PRVFDSLTKLTYLSLGYNELQSLPKGV-FD 154
Query: 405 EFLCLKELNM 414
+ LKEL +
Sbjct: 155 KLTSLKELRL 164
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
Query: 283 KLTNLIVLDLSHNKLSELPDFLNFKVLKELD---ISHNNFESMPLCLQVHFYVHIPYKHS 339
+LT L +L L+ NKL LP + FK LK L+ ++ N +++P+ + V++ +
Sbjct: 59 RLTKLRLLYLNDNKLQTLPAGI-FKELKNLETLWVTDNKLQALPIGV-FDQLVNL----A 112
Query: 340 QSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTH--TLQTFSMNHNIGMKI 397
+ + N +S+P + KL L + +N+++ L K +L+ + +N ++
Sbjct: 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172
Query: 398 PE 399
PE
Sbjct: 173 PE 174
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 232 QYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLD 291
Q ++ + L + + + LT LT L L +N Q + + + KLT+L L
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL---PKGVFDKLTSLKELR 163
Query: 292 LSHNKLSELPD--FLNFKVLKELDISHNNFESMP 323
L +N+L +P+ F LK L + +N + +P
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 239 VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
++L + ++ + + + KLT+L L L +N + V E KLT L L L +N+L
Sbjct: 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQ---LKRVPEGAFDKLTELKTLKLDNNQLK 194
Query: 299 ELPD--FLNFKVLKELDISHNNFE 320
+P+ F + + LK L + N ++
Sbjct: 195 RVPEGAFDSLEKLKMLQLQENPWD 218
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDIS 315
++ +L LDL + ++++ E + L+NL L+L+ L E+P+ L ELD+S
Sbjct: 158 RIPSLRRLDLGE--LKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLS 215
Query: 316 HNNFESM-PLCLQ--VHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQI 372
N+ ++ P Q +H + I N F+++ LV+++++HN +
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ--------SLVEINLAHNNL 267
Query: 373 KILHKPRCT--HTLQTFSMNHN 392
+L T H L+ ++HN
Sbjct: 268 TLLPHDLFTPLHHLERIHLHHN 289
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 20/163 (12%)
Query: 426 IWLLNH-MELKENGVFSNLISLHMQNTAAV--MSNVSQLKY--LKNIKYLNCSNDIDHRK 480
+WL N+ +E + F+ + SL + + +S +S+ + L N++YLN +
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA------- 193
Query: 481 SQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICLEKLNISHNKVYKLPE 539
+ L E+P ++ L + EL LS L+ I P L+ L+KL + +++ +
Sbjct: 194 ----MCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER 248
Query: 540 -SFANLKSLKILDVSYNKLTMLP-DGFVMLSNLTTFYAQRKYW 580
+F NL+SL +++++N LT+LP D F L +L + W
Sbjct: 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 524 LEKLNISHNKVYKLP-ESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQ 576
LE L +S N + + +F L +L L++ N+LT +P+G FV LS L + +
Sbjct: 90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 20/96 (20%)
Query: 481 SQDFVNVLWELPLSILYL--------------SSIQELHLSNVQLNCIPEDIGNLICLEK 526
+Q+ + L ELP S+ YL +S++ L + N QL +PE LE
Sbjct: 88 TQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTXLPELPA---LLEY 144
Query: 527 LNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPD 562
+N +N++ LPE SL++L V N+LT LP+
Sbjct: 145 INADNNQLTXLPEL---PTSLEVLSVRNNQLTFLPE 177
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 19/82 (23%)
Query: 498 LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLK------------ 545
++ EL L+ + L+ +P+++ I + L I+ N + LPE A+L+
Sbjct: 58 INQFSELQLNRLNLSSLPDNLPPQITV--LEITQNALISLPELPASLEYLDACDNRLSTL 115
Query: 546 -----SLKILDVSYNKLTMLPD 562
SLK LDV N+LT LP+
Sbjct: 116 PELPASLKHLDVDNNQLTXLPE 137
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 524 LEKLNISHNKVYKLPES-FANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYW 580
LE + NK+ ++P F + LK L+++ N+L +PDG F L++L + W
Sbjct: 172 LESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPW 230
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 131/321 (40%), Gaps = 67/321 (20%)
Query: 289 VLDLSHNKLSEL--PDFLNFKVLKELDISHNNFESM-PLCLQVHFYVHIPYKHSQSDISH 345
+LDL N++ L +F +F L+EL+++ N ++ P F + +
Sbjct: 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRT------LGLRS 89
Query: 346 NNFESMPLCLQVHFCKLVKLDISHNQIKIL--HKPRCTHTLQTFSMNHN----IGMKIPE 399
N + +PL + L KLDIS N+I IL + + + L++ + N I +
Sbjct: 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149
Query: 400 WFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVS 459
E L L++ N++S +P L+H+ LI L +++
Sbjct: 150 GLNSLEQLTLEKCNLTS-------IPTEALSHLH--------GLIVLRLRHLNINAIRDY 194
Query: 460 QLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPE-DI 518
K L +K L +I H D + + LY ++ L +++ L +P +
Sbjct: 195 SFKRLYRLKVL----EISHWPYLD------TMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244
Query: 519 GNLICLEKLNISHNKVYKL-------------------------PESFANLKSLKILDVS 553
+L+ L LN+S+N + + P +F L L++L+VS
Sbjct: 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304
Query: 554 YNKLTMLPDG-FVMLSNLTTF 573
N+LT L + F + NL T
Sbjct: 305 GNQLTTLEESVFHSVGNLETL 325
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 77/185 (41%), Gaps = 13/185 (7%)
Query: 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSH 294
++ T+ L + + + L+NLT LD+S N I + + M Q L NL L++
Sbjct: 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK---IVILLDYMFQDLYNLKSLEVGD 137
Query: 295 NKLSELP--DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMP 352
N L + F L++L + N S+P H + I + + H N ++
Sbjct: 138 NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR-----LRHLNINAIR 192
Query: 353 LCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQ--TFSMNHNIGMKIPEWFWYQEFLCLK 410
+L L+ISH P C + L + S+ H +P + + + L+
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP-YLAVRHLVYLR 251
Query: 411 ELNMS 415
LN+S
Sbjct: 252 FLNLS 256
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKL---TNLIVL 290
H + + L H +IN +++ ++L L VL++SH + D +M+ NL L
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD------TMTPNCLYGLNLTSL 229
Query: 291 DLSHNKLSELPDFLNFK---VLKELDISHNNFESM 322
++H L+ +P +L + L+ L++S+N ++
Sbjct: 230 SITHCNLTAVP-YLAVRHLVYLRFLNLSYNPISTI 263
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 500 SIQELHLSNVQLNCIP-EDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKL 557
+++ L LSN ++ I D+ + L+ L ++ N + + E SF++L SL+ LD+SYN L
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 558 TMLPDG-FVMLSNLT 571
+ L F LS+LT
Sbjct: 113 SNLSSSWFKPLSSLT 127
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 500 SIQELHLSNVQLNCIP-EDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKL 557
+++ L LSN ++ I D+ + L+ L ++ N + + E SF++L SL+ LD+SYN L
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Query: 558 TMLPDG-FVMLSNLT 571
+ L F LS+LT
Sbjct: 87 SNLSSSWFKPLSSLT 101
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 524 LEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYW 580
L++L IS NK+ LP++ + L L +L +S N+L +PDG F L++L + W
Sbjct: 453 LKELYISRNKLMTLPDA-SLLPMLLVLKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 253 MSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD----FLNFKV 308
+SQ L +L LDLS N + + +L L L N L+ L L K
Sbjct: 329 LSQHLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKN 388
Query: 309 LKELDISHNNFESMP 323
L +DIS N+F SMP
Sbjct: 389 LTNIDISKNSFHSMP 403
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 524 LEKLNISHNKVYKL-PESFANLKSLKILDVSYNKLTMLPD-GFVMLSNL 570
+ L++SH V+ L F LK LK+L+++YNK+ + D F L NL
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 18/149 (12%)
Query: 196 PGFKLQN-NDNDQNTKVTNA------MDIAMELIDTELNCCNKQYHDIFTVNLSHQDINF 248
GF N D DQNT A +D++ + + + + D+ +NL++ IN
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304
Query: 249 VQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNF 306
+ + L NL VL+LS+N ++ S L + +DL N ++ + D F
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGEL---YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361
Query: 307 KVLKELDISHNNFESMPLCLQVHFYVHIP 335
+ L+ LD+ N + +HF IP
Sbjct: 362 EKLQTLDLRDNALTT------IHFIPSIP 384
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 524 LEKLNISHNKVYKLP-ESFANLKSLKILDVSYNKLTML 560
L+ LN+++NK+ K+ E+F L +L++L++SYN L L
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 14/112 (12%)
Query: 222 IDTELNCCNKQY--------HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDI 273
+DT + C NK D+ + L V + +S +LT++DLS+N I
Sbjct: 11 LDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSN-YKHLTLIDLSNNR---I 66
Query: 274 NFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNFESMP 323
+ + +T L+ L LS+N+L +P F K L+ L + N+ +P
Sbjct: 67 STLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 25/88 (28%)
Query: 501 IQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKL----------------------- 537
+ EL+L Q +P+++ N L +++S+N++ L
Sbjct: 33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 538 --PESFANLKSLKILDVSYNKLTMLPDG 563
P +F LKSL++L + N ++++P+G
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPEG 120
>pdb|3VK6|A Chain A, Crystal Structure Of A Phosphotyrosine Binding Domain
Length = 101
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 92 IHTCEKCEKPIMIYGRMI 109
+H C+KC PI +YGRMI
Sbjct: 1 VHFCDKCGLPIKVYGRMI 18
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISH 316
LTNL L L+ N +DI + LTNL LDL++N++S L L EL +
Sbjct: 219 LTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 273
Query: 317 NNFESM-PLC 325
N ++ PL
Sbjct: 274 NQISNISPLA 283
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 498 LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKL 557
L+S+Q+L N + P + NL LE+L+IS NKV + A L +L+ L + N++
Sbjct: 154 LTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQI 210
Query: 558 T-MLPDGFVMLSNL 570
+ + P G +L+NL
Sbjct: 211 SDITPLG--ILTNL 222
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISH 316
LTNL L L+ N +DI + LTNL LDL++N++S L L EL +
Sbjct: 220 LTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 274
Query: 317 NNFESM-PLC 325
N ++ PL
Sbjct: 275 NQISNISPLA 284
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 498 LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKL 557
L+S+Q+L N + P + NL LE+L+IS NKV + A L +L+ L + N++
Sbjct: 155 LTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQI 211
Query: 558 T-MLPDGFVMLSNL 570
+ + P G +L+NL
Sbjct: 212 SDITPLG--ILTNL 223
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISH 316
LTNL L L+ N +DI + LTNL LDL++N++S L L EL +
Sbjct: 216 LTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 270
Query: 317 NNFESM-PLC 325
N ++ PL
Sbjct: 271 NQISNISPLA 280
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Query: 498 LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKL 557
L+S+Q+L S+ Q+ + + + NL LE+L+IS NKV + A L +L+ L + N++
Sbjct: 150 LTSLQQLSFSSNQVTDL-KPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQI 207
Query: 558 T-MLPDGFVMLSNL 570
+ + P G +L+NL
Sbjct: 208 SDITPLG--ILTNL 219
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISH 316
LTNL L L+ N +DI + LTNL LDL++N++S L L EL +
Sbjct: 215 LTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 269
Query: 317 NNFESM-PLC 325
N ++ PL
Sbjct: 270 NQISNISPLA 279
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 498 LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKL 557
L+S+Q+L+ N + P + NL LE+L+IS NKV + A L +L+ L + N++
Sbjct: 150 LTSLQQLNFGNQVTDLKP--LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQI 206
Query: 558 T-MLPDGFVMLSNL 570
+ + P G +L+NL
Sbjct: 207 SDITPLG--ILTNL 218
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 129/332 (38%), Gaps = 78/332 (23%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS------------------ 298
LTNLT L L +N DI+ ++ LTNL L+LS N +S
Sbjct: 106 LTNLTGLTLFNNQITDIDPLKN-----LTNLNRLELSSNTISDISALSGLTSLQQLNFGN 160
Query: 299 ---ELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQ-SDISHNNFESMPLC 354
+L N L+ LDIS N + + ++ + ++Q SDI+ PL
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT-------PLG 213
Query: 355 LQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
+ L +L ++ NQ+K + L + +N +I L EL +
Sbjct: 214 I---LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN---QISNLAPLSGLTKLTELKL 267
Query: 415 -----SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKY 469
S+ P + L ++EL EN + ++S + LKN+ Y
Sbjct: 268 GANQISNISPLAG---LTALTNLELNENQ----------------LEDISPISNLKNLTY 308
Query: 470 LNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNI 529
L F N+ P+S L+ +Q L SN +++ + + NL + L+
Sbjct: 309 LTLY----------FNNISDISPVS--SLTKLQRLFFSNNKVSDV-SSLANLTNINWLSA 355
Query: 530 SHNKVYKLPESFANLKSLKILDVSYNKLTMLP 561
HN++ L ANL + L ++ T P
Sbjct: 356 GHNQISDL-TPLANLTRITQLGLNDQAWTNAP 386
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISH 316
LTNL L L+ N +DI + LTNL LDL++N++S L L EL +
Sbjct: 216 LTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 270
Query: 317 NNFESM-PLC 325
N ++ PL
Sbjct: 271 NQISNISPLA 280
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 498 LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKL 557
L+S+Q+L+ S+ Q+ + + + NL LE+L+IS NKV + A L +L+ L + N++
Sbjct: 150 LTSLQQLNFSSNQVTDL-KPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQI 207
Query: 558 T-MLPDGFVMLSNL 570
+ + P G +L+NL
Sbjct: 208 SDITPLG--ILTNL 219
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISH 316
LTNL L L+ N +DI + LTNL LDL++N++S L L EL +
Sbjct: 216 LTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 270
Query: 317 NNFESM-PLC 325
N ++ PL
Sbjct: 271 NQISNISPLA 280
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Query: 498 LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKL 557
L+S+Q+L S+ Q+ + + + NL LE+L+IS NKV + A L +L+ L + N++
Sbjct: 150 LTSLQQLSFSSNQVTDL-KPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQI 207
Query: 558 T-MLPDGFVMLSNL 570
+ + P G +L+NL
Sbjct: 208 SDITPLG--ILTNL 219
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISH 316
LTNL L L+ N +DI + LTNL LDL++N++S L L EL +
Sbjct: 215 LTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 269
Query: 317 NNFESM-PLC 325
N ++ PL
Sbjct: 270 NQISNISPLA 279
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 498 LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKL 557
L+S+Q+L+ N + P + NL LE+L+IS NKV + A L +L+ L + N++
Sbjct: 150 LTSLQQLNFGNQVTDLKP--LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQI 206
Query: 558 T-MLPDGFVMLSNL 570
+ + P G +L+NL
Sbjct: 207 SDITPLG--ILTNL 218
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLS 293
H + +NLSH ++ E + L L L+L N+ N + + Q L L +L LS
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484
Query: 294 HNKLSELPD--FLNFKVLKELDISHNNFES 321
LS + F + K++ +D+SHN S
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 501 IQELHLSNVQLNCIPEDIGNLI-CLEKLNISHNKVYKLPESFANLKSLKI---LDVSYNK 556
+ +L L Q+ IPED +E L SHNK+ +P F N KS+ + +D SYNK
Sbjct: 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF-NAKSVYVXGSVDFSYNK 655
Query: 557 L 557
+
Sbjct: 656 I 656
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 241 LSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSEL 300
L I ++ + +LT LT LDL +N + + + KLT L L L+ N+L +
Sbjct: 45 LYDNQITKLEPGVFDRLTQLTRLDLDNNQ---LTVLPAGVFDKLTQLTQLSLNDNQLKSI 101
Query: 301 PD--FLNFKVLKELDISHNNFE 320
P F N K L + + +N ++
Sbjct: 102 PRGAFDNLKSLTHIWLLNNPWD 123
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDIS 315
T VL L N I ++ + +LT L LDL +N+L+ LP F L +L ++
Sbjct: 38 TTTQVLYLYDNQ---ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 94
Query: 316 HNNFESMP 323
N +S+P
Sbjct: 95 DNQLKSIP 102
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 17/138 (12%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISH 316
LTNL L+L+ N DI+ + + KLTNL + NK++++ N L+EL ++
Sbjct: 65 LTNLEYLNLNGNQITDISPLSNLV--KLTNLYI---GTNKITDISALQNLTNLRELYLNE 119
Query: 317 NNFESM-PLC-LQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374
+N + PL L + +++ H+ SD+S PL + L L ++ +++K
Sbjct: 120 DNISDISPLANLTKXYSLNLGANHNLSDLS-------PLS---NXTGLNYLTVTESKVKD 169
Query: 375 LHKPRCTHTLQTFSMNHN 392
+ L + S+N+N
Sbjct: 170 VTPIANLTDLYSLSLNYN 187
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 271 QDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISHN 317
++ ++ + L +L+ L+L+HN LS LP F + L EL + HN
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Query: 492 PLSILYLSSIQELHLSNVQLNCIPEDIGNLIC-LEKLNISHNKVYKLP--------ESFA 542
P + +SSI +LSN Q++ P+++ + L +N+ N + ++P E+F
Sbjct: 429 PFKGINVSSI---NLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENENFK 485
Query: 543 NLKSLKILDVSYNKLTMLPDGF 564
N L +D+ +NKLT L D F
Sbjct: 486 NTYLLTSIDLRFNKLTKLSDDF 507
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 241 LSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSEL 300
L I ++ + +LT LT LDL +N + + + KLT L L L+ N+L +
Sbjct: 37 LYDNQITKLEPGVFDRLTQLTRLDLDNNQ---LTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 301 PD--FLNFKVLKELDISHNNFE 320
P F N K L + + +N ++
Sbjct: 94 PRGAFDNLKSLTHIWLLNNPWD 115
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDIS 315
T VL L N I ++ + +LT L LDL +N+L+ LP F L +L ++
Sbjct: 30 TTTQVLYLYDNQ---ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 316 HNNFESMP 323
N +S+P
Sbjct: 87 DNQLKSIP 94
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 499 SSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLT 558
S ++EL +S +L +P L ++L +S N++ LP + L SL V N+LT
Sbjct: 221 SGLKELIVSGNRLTSLPVLPSEL---KELMVSGNRLTSLPMLPSGLLSL---SVYRNQLT 274
Query: 559 MLPDGFVMLSNLTT 572
LP+ + LS+ TT
Sbjct: 275 RLPESLIHLSSETT 288
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 17/87 (19%)
Query: 499 SSIQELHLSNVQLNCIPEDIGNLI-----------------CLEKLNISHNKVYKLPESF 541
S +QEL +S+ QL +P L L++L +S N++ LP
Sbjct: 181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLP 240
Query: 542 ANLKSLKILDVSYNKLTMLPDGFVMLS 568
+ LK L + L MLP G + LS
Sbjct: 241 SELKELMVSGNRLTSLPMLPSGLLSLS 267
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 247 NFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNF 306
N ++S++ ++ + + + N + N + Q TNL L LSHN++S+L +
Sbjct: 25 NLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDL 84
Query: 307 KVLKELDISHN---NFESMP-LCLQVHFYVHIPYKHSQSDISHNNFESM--------PLC 354
L+EL ++ N N +P CL F + + + S I N E + +
Sbjct: 85 TKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV 144
Query: 355 LQVHFCKLVKLDISHNQI 372
+ KL LD+ N+I
Sbjct: 145 MLGFLSKLEVLDLHGNEI 162
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 500 SIQELHLSNVQLNCIP-EDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKL 557
++ ELHL + ++ I ED+ L +L + HN++ + S + L +L+ L + NKL
Sbjct: 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253
Query: 558 TMLPDGFVMLSNLTTFY 574
+ +P G L L Y
Sbjct: 254 SRVPAGLPDLKLLQVVY 270
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 524 LEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYW 580
LE+L ++ N++ K+ + +F L LK L + N+L +PDG F L++L + W
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 359
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 28.9 bits (63), Expect = 7.8, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDIS 315
T VL L N I ++ + +LT L LDL +N+L+ LP F L +L ++
Sbjct: 30 TTTQVLYLYDNR---ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 316 HNNFESMP 323
N +S+P
Sbjct: 87 DNQLKSIP 94
>pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase
pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase
pdb|1JSW|C Chain C, Native L-Aspartate Ammonia Lyase
pdb|1JSW|D Chain D, Native L-Aspartate Ammonia Lyase
Length = 478
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 473 SNDIDHRKSQDFVNVLWELPLSILY----LSSIQELHLSNVQLNCIPEDIGNLICLEKLN 528
SN+I R +D + E+P Y L +I+ ++SN +++ IPE + ++ ++K
Sbjct: 2 SNNI--RIEEDLLGT-REVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAA 58
Query: 529 ISHNK-VYKLPESFAN 543
NK + +P+S AN
Sbjct: 59 AMANKELQTIPKSVAN 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,202,874
Number of Sequences: 62578
Number of extensions: 708274
Number of successful extensions: 2431
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 1753
Number of HSP's gapped (non-prelim): 417
length of query: 594
length of database: 14,973,337
effective HSP length: 104
effective length of query: 490
effective length of database: 8,465,225
effective search space: 4147960250
effective search space used: 4147960250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)