Query psy6452
Match_columns 594
No_of_seqs 526 out of 3119
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 18:15:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6q_A CD180 antigen; protein- 100.0 3.5E-40 1.2E-44 367.7 39.8 420 143-593 50-548 (606)
2 3rgz_A Protein brassinosteroid 100.0 5.3E-41 1.8E-45 384.1 33.6 415 148-583 221-719 (768)
3 3rgz_A Protein brassinosteroid 100.0 2.5E-41 8.6E-46 386.8 30.2 419 148-594 198-706 (768)
4 1ziw_A TOLL-like receptor 3; i 100.0 8.8E-40 3E-44 369.5 40.9 473 105-589 5-605 (680)
5 3t6q_A CD180 antigen; protein- 100.0 1.7E-39 5.7E-44 362.2 38.0 414 151-594 34-526 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-39 4.9E-44 362.8 30.0 135 438-582 421-559 (606)
7 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-39 6.1E-44 357.6 30.2 339 226-591 66-496 (549)
8 4eco_A Uncharacterized protein 100.0 7.8E-40 2.7E-44 366.5 26.7 329 226-589 239-608 (636)
9 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-38 3.6E-43 360.6 35.5 414 150-583 25-519 (680)
10 4ecn_A Leucine-rich repeat pro 100.0 3.2E-39 1.1E-43 368.8 28.5 408 150-591 323-850 (876)
11 3vq2_A TLR4, TOLL-like recepto 100.0 6.7E-39 2.3E-43 357.3 30.4 405 150-594 32-523 (606)
12 3v47_A TOLL-like receptor 5B a 100.0 1.5E-38 5.2E-43 341.9 31.3 374 154-585 14-412 (455)
13 4eco_A Uncharacterized protein 100.0 2.9E-39 9.8E-44 361.9 24.7 346 219-591 192-589 (636)
14 2z63_A TOLL-like receptor 4, v 100.0 2.4E-38 8.2E-43 350.0 30.3 400 151-584 29-534 (570)
15 2z63_A TOLL-like receptor 4, v 100.0 1.5E-37 5.3E-42 343.5 34.1 385 144-561 46-535 (570)
16 4ecn_A Leucine-rich repeat pro 100.0 9.2E-38 3.2E-42 356.8 32.5 383 160-584 435-867 (876)
17 2z7x_B TOLL-like receptor 1, v 100.0 8E-38 2.7E-42 342.2 27.4 146 153-319 3-150 (520)
18 4g8a_A TOLL-like receptor 4; l 100.0 5.5E-37 1.9E-41 342.9 32.7 190 381-582 370-581 (635)
19 1o6v_A Internalin A; bacterial 100.0 4.6E-36 1.6E-40 323.8 34.1 349 149-587 45-394 (466)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.1E-37 2.4E-41 338.0 27.1 383 154-582 35-511 (562)
21 3j0a_A TOLL-like receptor 5; m 100.0 8.9E-37 3E-41 352.7 26.3 152 154-322 8-163 (844)
22 3j0a_A TOLL-like receptor 5; m 100.0 9.6E-37 3.3E-41 352.4 26.4 443 105-589 5-547 (844)
23 4g8a_A TOLL-like receptor 4; l 100.0 8.1E-36 2.8E-40 333.4 33.0 350 227-591 93-565 (635)
24 2z81_A CD282 antigen, TOLL-lik 100.0 2.1E-36 7.1E-41 333.1 25.5 398 143-584 43-513 (549)
25 2z7x_B TOLL-like receptor 1, v 100.0 2.5E-36 8.6E-41 330.3 25.8 384 150-583 21-483 (520)
26 3v47_A TOLL-like receptor 5B a 100.0 3.2E-35 1.1E-39 316.0 31.3 338 234-594 30-397 (455)
27 3o6n_A APL1; leucine-rich repe 100.0 2.4E-35 8.2E-40 310.7 28.7 311 232-584 43-355 (390)
28 1jl5_A Outer protein YOPM; leu 100.0 9.7E-36 3.3E-40 319.5 25.7 381 142-583 3-411 (454)
29 1o6v_A Internalin A; bacterial 100.0 1.7E-34 5.8E-39 311.6 34.3 340 162-593 37-376 (466)
30 2id5_A Lingo-1, leucine rich r 100.0 7.6E-35 2.6E-39 315.1 25.9 315 154-558 15-333 (477)
31 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8E-35 2.8E-39 321.5 26.1 363 150-558 52-510 (562)
32 3oja_B Anopheles plasmodium-re 100.0 4.1E-34 1.4E-38 318.0 28.7 309 233-583 50-360 (597)
33 1jl5_A Outer protein YOPM; leu 100.0 1.3E-33 4.3E-38 303.1 31.4 343 151-583 72-431 (454)
34 3o6n_A APL1; leucine-rich repe 100.0 3.6E-34 1.2E-38 301.8 26.1 308 146-559 41-353 (390)
35 4fmz_A Internalin; leucine ric 100.0 2.2E-33 7.5E-38 290.7 30.6 306 231-582 41-347 (347)
36 3oja_B Anopheles plasmodium-re 100.0 2.2E-33 7.4E-38 312.2 29.6 306 147-558 48-358 (597)
37 3bz5_A Internalin-J, INLJ; leu 100.0 2.2E-33 7.6E-38 301.4 27.6 308 145-537 37-354 (457)
38 4fmz_A Internalin; leucine ric 100.0 2E-32 6.7E-37 283.6 32.3 281 233-558 65-346 (347)
39 2id5_A Lingo-1, leucine rich r 100.0 1.1E-32 3.7E-37 298.2 24.4 314 237-583 14-335 (477)
40 3bz5_A Internalin-J, INLJ; leu 100.0 7.4E-32 2.5E-36 289.6 30.0 337 166-589 37-396 (457)
41 1xku_A Decorin; proteoglycan, 100.0 1.5E-31 5.2E-36 275.1 27.1 290 230-579 27-330 (330)
42 2ft3_A Biglycan; proteoglycan, 100.0 7.8E-32 2.7E-36 277.6 24.2 285 233-579 32-331 (332)
43 2ft3_A Biglycan; proteoglycan, 100.0 7.2E-30 2.5E-34 262.9 26.2 265 235-556 55-331 (332)
44 1xku_A Decorin; proteoglycan, 100.0 1.9E-29 6.4E-34 259.5 28.7 267 234-556 52-330 (330)
45 3g06_A SSPH2 (leucine-rich rep 100.0 1.4E-29 4.8E-34 280.3 29.4 264 151-565 41-305 (622)
46 1z7x_W Ribonuclease inhibitor; 100.0 5.8E-32 2E-36 290.9 5.2 341 232-588 26-418 (461)
47 1z7x_W Ribonuclease inhibitor; 100.0 5.9E-30 2E-34 275.3 8.4 386 151-590 4-449 (461)
48 3zyj_A Leucine-rich repeat-con 100.0 1E-27 3.6E-32 256.5 24.1 241 154-558 47-292 (440)
49 2z80_A TOLL-like receptor 2, v 100.0 1.7E-28 5.9E-33 254.7 14.9 173 155-374 36-212 (353)
50 3o53_A Protein LRIM1, AGAP0063 100.0 2.3E-28 7.8E-33 250.0 14.9 260 234-578 10-272 (317)
51 2z80_A TOLL-like receptor 2, v 100.0 5.1E-28 1.7E-32 251.2 17.2 273 234-585 31-318 (353)
52 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-27 4.1E-32 244.2 17.1 250 234-584 50-308 (313)
53 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-28 6.6E-33 250.5 8.4 245 229-558 29-276 (317)
54 2z66_A Variable lymphocyte rec 99.9 9.3E-27 3.2E-31 236.6 19.3 245 310-583 10-263 (306)
55 2z66_A Variable lymphocyte rec 99.9 2.6E-27 8.8E-32 240.8 14.4 272 236-586 9-292 (306)
56 3g06_A SSPH2 (leucine-rich rep 99.9 7.3E-26 2.5E-30 250.5 27.1 269 234-592 40-308 (622)
57 3zyi_A Leucine-rich repeat-con 99.9 9.8E-26 3.3E-30 242.0 23.1 152 154-376 58-212 (452)
58 3zyi_A Leucine-rich repeat-con 99.9 1.7E-25 6E-30 240.1 23.3 245 286-582 55-304 (452)
59 3oja_A Leucine-rich immune mol 99.9 5.9E-26 2E-30 245.7 18.4 234 258-576 34-270 (487)
60 1ozn_A Reticulon 4 receptor; N 99.9 1.8E-25 6.3E-30 224.7 20.2 217 154-418 15-236 (285)
61 3oja_A Leucine-rich immune mol 99.9 1.9E-26 6.5E-31 249.6 11.3 238 231-553 31-270 (487)
62 4fcg_A Uncharacterized protein 99.9 1.8E-25 6.2E-30 229.5 17.7 240 306-589 80-322 (328)
63 1wwl_A Monocyte differentiatio 99.9 1.1E-26 3.8E-31 236.9 7.1 259 231-583 40-311 (312)
64 3zyj_A Leucine-rich repeat-con 99.9 6.3E-25 2.1E-29 234.9 20.6 243 309-582 45-293 (440)
65 1ozn_A Reticulon 4 receptor; N 99.9 2.2E-24 7.4E-29 216.9 21.0 219 310-582 14-239 (285)
66 1ogq_A PGIP-2, polygalacturona 99.9 5.3E-25 1.8E-29 224.5 16.1 229 307-585 50-286 (313)
67 4fcg_A Uncharacterized protein 99.9 1.7E-24 5.7E-29 222.3 19.8 235 256-561 79-317 (328)
68 1p9a_G Platelet glycoprotein I 99.9 7.7E-24 2.6E-28 213.5 20.1 201 303-558 6-208 (290)
69 3ogk_B Coronatine-insensitive 99.9 2.1E-25 7E-30 247.5 7.8 334 232-586 162-531 (592)
70 2z62_A TOLL-like receptor 4, v 99.9 1.5E-23 5.1E-28 209.7 19.9 216 154-418 11-235 (276)
71 1p9a_G Platelet glycoprotein I 99.9 2.8E-23 9.5E-28 209.3 20.0 204 228-535 4-208 (290)
72 2z62_A TOLL-like receptor 4, v 99.9 2.6E-23 8.7E-28 208.0 19.0 204 336-584 28-240 (276)
73 2o6q_A Variable lymphocyte rec 99.9 9.9E-23 3.4E-27 203.1 22.5 88 495-582 129-219 (270)
74 2o6q_A Variable lymphocyte rec 99.9 7.1E-23 2.4E-27 204.2 21.4 193 153-392 19-215 (270)
75 1wwl_A Monocyte differentiatio 99.9 5.5E-24 1.9E-28 216.9 9.0 250 151-456 44-311 (312)
76 2xwt_C Thyrotropin receptor; s 99.9 3.1E-23 1E-27 202.9 13.7 203 162-417 23-236 (239)
77 1h6u_A Internalin H; cell adhe 99.9 1.8E-22 6.2E-27 205.3 17.2 216 260-564 21-236 (308)
78 3rfs_A Internalin B, repeat mo 99.9 9.9E-23 3.4E-27 203.4 12.9 227 234-569 19-247 (272)
79 3goz_A Leucine-rich repeat-con 99.9 2.7E-23 9.4E-28 216.3 8.5 134 238-374 2-152 (362)
80 3rfs_A Internalin B, repeat mo 99.9 3.2E-22 1.1E-26 199.7 14.6 184 233-466 62-247 (272)
81 1h6u_A Internalin H; cell adhe 99.9 1.2E-21 4.1E-26 199.2 18.9 217 235-541 20-236 (308)
82 4glp_A Monocyte differentiatio 99.9 1.8E-22 6.1E-27 205.5 12.5 84 496-582 221-308 (310)
83 3ogk_B Coronatine-insensitive 99.9 4.6E-23 1.6E-27 228.6 8.1 135 439-583 340-503 (592)
84 3m19_A Variable lymphocyte rec 99.9 2.3E-21 7.7E-26 191.1 18.6 176 153-375 17-194 (251)
85 3goz_A Leucine-rich repeat-con 99.9 1.5E-22 5.2E-27 210.7 8.2 264 262-559 2-298 (362)
86 2xwt_C Thyrotropin receptor; s 99.9 6.7E-22 2.3E-26 193.3 12.3 191 151-392 32-236 (239)
87 4glp_A Monocyte differentiatio 99.9 2.4E-22 8.3E-27 204.5 8.1 227 146-418 60-305 (310)
88 4ay9_X Follicle-stimulating ho 99.9 3.4E-21 1.2E-25 199.5 16.6 213 154-417 13-233 (350)
89 4ay9_X Follicle-stimulating ho 99.9 2.8E-21 9.7E-26 200.1 15.5 238 237-555 12-256 (350)
90 2p1m_B Transport inhibitor res 99.9 2.3E-22 7.8E-27 223.0 7.4 137 440-582 371-520 (594)
91 3cvr_A Invasion plasmid antige 99.8 1.5E-20 5.2E-25 205.5 19.5 202 286-584 60-277 (571)
92 3m19_A Variable lymphocyte rec 99.8 3.4E-20 1.2E-24 182.7 19.7 175 308-558 15-192 (251)
93 2ca6_A RAN GTPase-activating p 99.8 1.4E-21 4.7E-26 205.2 8.2 254 299-584 23-319 (386)
94 3cvr_A Invasion plasmid antige 99.8 2E-20 6.9E-25 204.6 15.3 209 259-560 60-276 (571)
95 2ca6_A RAN GTPase-activating p 99.8 2.1E-21 7.1E-26 203.8 5.9 112 460-577 211-339 (386)
96 1h6t_A Internalin B; cell adhe 99.8 3.1E-19 1.1E-23 179.8 17.6 189 154-399 28-217 (291)
97 2p1m_B Transport inhibitor res 99.8 1.2E-21 4E-26 217.3 -1.1 386 149-579 104-542 (594)
98 2xot_A Amphoterin-induced prot 99.8 1.4E-19 4.8E-24 188.1 13.5 177 154-374 22-203 (361)
99 1h6t_A Internalin B; cell adhe 99.8 3E-19 1E-23 179.9 13.1 171 360-561 46-216 (291)
100 2ast_B S-phase kinase-associat 99.8 7.7E-20 2.6E-24 187.8 8.6 83 285-373 70-156 (336)
101 1m9s_A Internalin B; cell inva 99.8 1.3E-18 4.3E-23 192.3 17.1 189 154-399 25-214 (605)
102 2o6s_A Variable lymphocyte rec 99.8 8.1E-19 2.8E-23 167.5 12.7 130 154-325 11-142 (208)
103 3e6j_A Variable lymphocyte rec 99.8 3.9E-18 1.3E-22 165.4 15.5 150 154-374 23-173 (229)
104 2o6s_A Variable lymphocyte rec 99.8 3.7E-18 1.3E-22 162.9 14.0 131 236-377 9-141 (208)
105 2v9t_B SLIT homolog 2 protein 99.8 4.8E-18 1.6E-22 163.8 14.5 150 154-374 15-166 (220)
106 1m9s_A Internalin B; cell inva 99.8 3.5E-18 1.2E-22 188.7 14.2 168 232-418 41-208 (605)
107 1xeu_A Internalin C; cellular 99.8 2.4E-18 8.2E-23 170.6 11.7 125 233-374 62-186 (263)
108 1xeu_A Internalin C; cellular 99.8 2.6E-18 8.8E-23 170.4 11.8 178 166-401 14-191 (263)
109 3e6j_A Variable lymphocyte rec 99.7 1.9E-17 6.5E-22 160.6 16.7 152 235-398 20-175 (229)
110 2v9t_B SLIT homolog 2 protein 99.7 1.5E-17 5.3E-22 160.2 15.3 152 236-398 13-168 (220)
111 2v70_A SLIT-2, SLIT homolog 2 99.7 1.4E-17 4.9E-22 160.4 14.5 151 154-374 15-167 (220)
112 3sb4_A Hypothetical leucine ri 99.7 3.6E-18 1.2E-22 175.1 9.6 95 498-594 225-323 (329)
113 2xot_A Amphoterin-induced prot 99.7 1.2E-17 3.9E-22 173.6 13.4 171 236-418 20-200 (361)
114 2ast_B S-phase kinase-associat 99.7 9.2E-18 3.1E-22 172.3 11.9 254 307-588 47-313 (336)
115 1dce_A Protein (RAB geranylger 99.7 3.9E-20 1.3E-24 203.1 -7.0 118 443-574 443-566 (567)
116 2v70_A SLIT-2, SLIT homolog 2 99.7 5.3E-17 1.8E-21 156.4 15.6 88 494-581 76-166 (220)
117 4ezg_A Putative uncharacterize 99.7 8.2E-17 2.8E-21 152.2 11.7 128 441-582 66-195 (197)
118 4ezg_A Putative uncharacterize 99.7 1.8E-16 6.3E-21 149.8 12.2 154 357-559 41-195 (197)
119 4fdw_A Leucine rich hypothetic 99.7 1.1E-15 3.7E-20 160.6 19.0 265 234-582 113-384 (401)
120 3sb4_A Hypothetical leucine ri 99.7 1.2E-16 3.9E-21 163.9 11.1 286 233-575 24-328 (329)
121 1dce_A Protein (RAB geranylger 99.7 3.8E-18 1.3E-22 187.3 -1.2 125 443-586 425-551 (567)
122 2ell_A Acidic leucine-rich nuc 99.6 2.3E-16 7.7E-21 145.1 9.0 135 440-586 23-165 (168)
123 4b8c_D Glucose-repressible alc 99.6 1.9E-16 6.5E-21 179.0 10.0 120 458-588 217-336 (727)
124 4b8c_D Glucose-repressible alc 99.6 1.5E-16 5E-21 180.0 5.4 115 251-376 217-332 (727)
125 4fdw_A Leucine rich hypothetic 99.6 6.6E-15 2.3E-19 154.6 17.5 249 254-592 109-369 (401)
126 4fs7_A Uncharacterized protein 99.6 9.7E-15 3.3E-19 153.4 18.8 86 494-583 292-380 (394)
127 2o6r_A Variable lymphocyte rec 99.6 4.5E-15 1.5E-19 137.6 13.7 130 153-324 10-141 (177)
128 2wfh_A SLIT homolog 2 protein 99.6 3E-15 1E-19 141.0 12.1 125 154-321 14-140 (193)
129 1w8a_A SLIT protein; signaling 99.6 4.8E-15 1.6E-19 139.5 11.7 128 153-321 11-140 (192)
130 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.7E-19 135.0 14.0 129 235-374 8-138 (177)
131 2wfh_A SLIT homolog 2 protein 99.6 9.2E-15 3.1E-19 137.6 13.4 125 444-582 13-140 (193)
132 2je0_A Acidic leucine-rich nuc 99.6 2.1E-15 7.1E-20 135.6 8.6 126 440-577 16-149 (149)
133 2je0_A Acidic leucine-rich nuc 99.6 5.3E-15 1.8E-19 133.0 9.7 121 463-594 15-142 (149)
134 2ell_A Acidic leucine-rich nuc 99.6 6.9E-15 2.3E-19 135.1 9.8 111 441-563 49-165 (168)
135 4fs7_A Uncharacterized protein 99.6 1.2E-13 4.1E-18 145.0 20.2 303 227-573 64-393 (394)
136 1w8a_A SLIT protein; signaling 99.6 2.4E-14 8.3E-19 134.6 13.2 87 495-581 50-139 (192)
137 1a9n_A U2A', U2A'; complex (nu 99.6 5.7E-15 1.9E-19 136.8 8.3 132 438-583 16-155 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.5 4.5E-14 1.6E-18 130.7 11.2 123 459-594 13-142 (176)
139 2r9u_A Variable lymphocyte rec 99.5 2.3E-13 7.7E-18 125.8 11.9 105 468-585 15-122 (174)
140 3g39_A Variable lymphocyte rec 99.5 2.7E-13 9.4E-18 124.7 11.6 106 467-585 11-119 (170)
141 4gt6_A Cell surface protein; l 99.5 8.7E-12 3E-16 130.8 24.1 131 229-369 58-191 (394)
142 1ds9_A Outer arm dynein; leuci 99.4 5.3E-16 1.8E-20 146.7 -7.6 161 404-584 15-188 (198)
143 3g39_A Variable lymphocyte rec 99.4 3.5E-13 1.2E-17 124.1 10.4 87 234-323 30-118 (170)
144 2r9u_A Variable lymphocyte rec 99.4 6.2E-13 2.1E-17 122.8 10.5 88 234-324 33-122 (174)
145 4gt6_A Cell surface protein; l 99.4 1.3E-11 4.3E-16 129.5 20.2 305 245-580 50-369 (394)
146 1ds9_A Outer arm dynein; leuci 99.4 1.9E-14 6.6E-19 136.0 -3.0 132 440-584 17-156 (198)
147 4h09_A Hypothetical leucine ri 99.3 5.3E-11 1.8E-15 124.0 19.2 305 231-590 43-354 (379)
148 3un9_A NLR family member X1; l 99.2 9.3E-13 3.2E-17 136.9 1.5 162 382-558 72-252 (372)
149 3un9_A NLR family member X1; l 99.2 3.7E-13 1.3E-17 139.9 -1.8 113 440-558 154-283 (372)
150 2ifg_A High affinity nerve gro 99.2 2.9E-11 1E-15 124.3 11.5 95 487-583 20-118 (347)
151 4h09_A Hypothetical leucine ri 99.1 3.3E-09 1.1E-13 110.3 21.6 288 252-594 40-335 (379)
152 2ifg_A High affinity nerve gro 99.1 1.7E-10 5.8E-15 118.6 9.9 84 234-321 31-117 (347)
153 1io0_A Tropomodulin; LRR prote 98.7 4.7E-09 1.6E-13 97.7 3.0 117 460-582 31-165 (185)
154 2ra8_A Uncharacterized protein 98.6 2.7E-08 9.3E-13 102.4 6.2 158 404-579 169-341 (362)
155 2ra8_A Uncharacterized protein 98.5 8.4E-08 2.9E-12 98.8 5.1 138 438-588 169-327 (362)
156 1io0_A Tropomodulin; LRR prote 98.4 3.8E-08 1.3E-12 91.4 1.6 113 440-558 35-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 1.8E-07 6.1E-12 91.6 2.9 87 234-321 141-234 (267)
158 3rw6_A Nuclear RNA export fact 98.3 2E-07 6.8E-12 91.3 2.9 77 497-574 168-257 (267)
159 1pgv_A TMD-1, tropomodulin TMD 97.8 9.2E-06 3.1E-10 75.3 4.1 88 494-581 65-170 (197)
160 3e4g_A ATP synthase subunit S, 97.8 1.5E-05 5E-10 72.5 4.0 86 233-321 60-154 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 4.9E-05 1.7E-09 70.4 5.9 90 496-585 38-143 (197)
162 3rfe_A Platelet glycoprotein I 97.6 7.4E-05 2.5E-09 64.6 6.5 55 502-558 11-68 (130)
163 3e4g_A ATP synthase subunit S, 97.5 5.3E-05 1.8E-09 68.8 3.9 82 499-582 61-154 (176)
164 3rfe_A Platelet glycoprotein I 97.5 0.00017 5.8E-09 62.3 6.8 56 310-373 11-68 (130)
165 3vk6_A E3 ubiquitin-protein li 94.6 0.01 3.4E-07 47.3 1.2 31 92-122 1-31 (101)
166 2lz0_A Uncharacterized protein 74.4 1.8 6.3E-05 34.7 2.8 48 244-295 6-53 (100)
167 2lz0_A Uncharacterized protein 44.8 13 0.00045 29.6 2.8 44 225-269 11-54 (100)
No 1
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.5e-40 Score=367.68 Aligned_cols=420 Identities=17% Similarity=0.166 Sum_probs=266.1
Q ss_pred cchhhhccCccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCcccc----------
Q psy6452 143 DENTVKTEALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNT---------- 209 (594)
Q Consensus 143 ~~~~~~~~~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~---------- 209 (594)
+....+..+|+++++++|.++.+++.. +++|++|+|++|+++++.+. .+.+++.++...+......
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~l~~~~~~~l 128 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALKHLFFIQTGISSIDFIPLHNQ 128 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCCEEECTTSCCSCGGGSCCTTC
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhcccccccEeeccccCcccCCcchhccC
Confidence 445556678889999999998886554 77899999999999877643 3444444443333322222
Q ss_pred cccccccccccccccccccCccCCCcccEEEccCCCCcccchHhhhcCCCCC--EEECCCCCCCCccccchhhhhc----
Q psy6452 210 KVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLT--VLDLSHNNHQDINFVQESMSQK---- 283 (594)
Q Consensus 210 ~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~--~L~Ls~N~l~~i~~l~~~~~~~---- 283 (594)
.-...++++.|.+.......+..+++|++|++++|.++.+++..|..+++|+ .|++++|.+++ +++..|..
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~---~~~~~~~~~~L~ 205 (606)
T 3t6q_A 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG---IEPGAFDSAVFQ 205 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE---ECTTTTTTCEEE
T ss_pred CcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc---cChhHhhhcccc
Confidence 2244556666666654334444478888888888888888777788888888 78888887654 22222211
Q ss_pred ---------------------------------------------CC--CCCEEEcCCCCCCCCCC--cCCCcCccEEec
Q psy6452 284 ---------------------------------------------LT--NLIVLDLSHNKLSELPD--FLNFKVLKELDI 314 (594)
Q Consensus 284 ---------------------------------------------l~--~L~~L~Ls~N~l~~lp~--~~~l~~L~~L~L 314 (594)
+. +|+.|++++|.++.++. |..+++|++|++
T Consensus 206 ~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 285 (606)
T 3t6q_A 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285 (606)
T ss_dssp EEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEEC
T ss_pred ccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEec
Confidence 11 56667777777776653 667777777777
Q ss_pred cCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCC-CCCc--cccCCccEEeCCC
Q psy6452 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI-LHKP--RCTHTLQTFSMNH 391 (594)
Q Consensus 315 s~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~--~~~~~L~~L~L~~ 391 (594)
++|.++.+|..+.. .++|++|++++|.++.+++..+.++++|++|++++|.+.+ ++.. ...++|++|++++
T Consensus 286 ~~n~l~~lp~~l~~------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 359 (606)
T 3t6q_A 286 TATHLSELPSGLVG------LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359 (606)
T ss_dssp TTSCCSCCCSSCCS------CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCS
T ss_pred cCCccCCCChhhcc------cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCC
Confidence 77777777765432 2567777777777777766666677777777777777663 3322 2335677777777
Q ss_pred CCCCCCCc-hhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCcc-ccccCCCcce
Q psy6452 392 NIGMKIPE-WFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVS-QLKYLKNIKY 469 (594)
Q Consensus 392 N~~~~ip~-~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~ 469 (594)
|.+..++. ...+..+++|+.|++++|. +.+..|. .+..+++|+.|++++|.+++..+. .+..+++|++
T Consensus 360 n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 360 DDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTE---------AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp SCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTT---------TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred CccccccCcchhcccCCCCCEEECCCCc-CCcCCHH---------HhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 76665531 1113567777777777764 2222222 234455667777777766655443 3666667777
Q ss_pred EeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcc--cc--ccccCCCCCcEEEccCCCCccc-CccccCC
Q psy6452 470 LNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC--IP--EDIGNLICLEKLNISHNKVYKL-PESFANL 544 (594)
Q Consensus 470 L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~--ip--~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l 544 (594)
|++++| ...+..|..+..+++|++|++++|.++. ++ ..+..+++|++|+|++|+++.+ |..|..+
T Consensus 430 L~l~~n----------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 499 (606)
T 3t6q_A 430 LNLSHS----------LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499 (606)
T ss_dssp EECTTC----------CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred EECCCC----------ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence 777665 3333445556666777777777777663 22 3466677777777777777765 4466777
Q ss_pred CCCCEEECcCCCCCc-cCcccccCCCCcEEEccCCCCcccCHhHHhhhhC
Q psy6452 545 KSLKILDVSYNKLTM-LPDGFVMLSNLTTFYAQRKYWMFLTISLLCYLMG 593 (594)
Q Consensus 545 ~~L~~L~Ls~N~l~~-ip~~l~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 593 (594)
++|++|+|++|+++. .|..+..+++| +|++++|+++.+++..|..+.+
T Consensus 500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~ 548 (606)
T 3t6q_A 500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQ 548 (606)
T ss_dssp TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHT
T ss_pred cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCC
Confidence 777777777777764 34556677777 7777777777777666665544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.3e-41 Score=384.13 Aligned_cols=415 Identities=21% Similarity=0.261 Sum_probs=289.0
Q ss_pred hccCccEEecCCCCCcc-cChhh--hccCcEEEccCccccccccccccCCCCCccccCCCCcc-------c-cccccccc
Q psy6452 148 KTEALSTRTFCDHELQS-IEDDI--LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQ-------N-TKVTNAMD 216 (594)
Q Consensus 148 ~~~~L~~l~l~~n~l~~-ip~~~--l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~-------~-~~~~~~~~ 216 (594)
...+|+.+++++|.++. +|..+ +++|++|+|++|++++..+...+..+..+.+.+..... . ..-...++
T Consensus 221 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~ 300 (768)
T 3rgz_A 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300 (768)
T ss_dssp TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE
T ss_pred cCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE
Confidence 33455555555555542 23222 45556666666655554433333333333332221110 0 12234445
Q ss_pred ccccccccccccCccCCCcccEEEccCCCCc-ccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCC-CCCEEEcCC
Q psy6452 217 IAMELIDTELNCCNKQYHDIFTVNLSHQDIN-FVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLT-NLIVLDLSH 294 (594)
Q Consensus 217 l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~-~L~~L~Ls~ 294 (594)
++.|.+.+..+..+..+++|++|++++|+++ .++...|..+++|++|++++|++++ .+|..+ ..++ +|++|++++
T Consensus 301 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~--~~p~~l-~~l~~~L~~L~Ls~ 377 (768)
T 3rgz_A 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG--ELPESL-TNLSASLLTLDLSS 377 (768)
T ss_dssp CCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE--CCCTTH-HHHTTTCSEEECCS
T ss_pred CcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc--cccHHH-HhhhcCCcEEEccC
Confidence 5555555555666666666666666666665 5555555666666666666666432 233333 3333 666666666
Q ss_pred CCCC-CCC-CcCC--CcCccEEeccCCcccc-CchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCC
Q psy6452 295 NKLS-ELP-DFLN--FKVLKELDISHNNFES-MPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISH 369 (594)
Q Consensus 295 N~l~-~lp-~~~~--l~~L~~L~Ls~N~l~~-lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~ 369 (594)
|.++ .+| .+.. +++|++|++++|.+++ +|..+.. .++|+.|++++|.+++..+..|.++++|+.|++++
T Consensus 378 N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN------CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451 (768)
T ss_dssp SEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG------CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred CCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc------CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCC
Confidence 6665 233 3333 5677777777777774 5554432 26889999999998876666777889999999999
Q ss_pred CCCCCCCCcc--ccCCccEEeCCCCCCC-CCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEE
Q psy6452 370 NQIKILHKPR--CTHTLQTFSMNHNIGM-KIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISL 446 (594)
Q Consensus 370 N~l~~l~~~~--~~~~L~~L~L~~N~~~-~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L 446 (594)
|.+++..+.. ..++|++|++++|.+. .+|..+ ..+++|+.|++++|+ +.+.+|.++ ..+++|++|
T Consensus 452 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L~~N~-l~~~~p~~~---------~~l~~L~~L 519 (768)
T 3rgz_A 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLSNNR-LTGEIPKWI---------GRLENLAIL 519 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSC-CCSCCCGGG---------GGCTTCCEE
T ss_pred CcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH--hcCCCCCEEEccCCc-cCCcCChHH---------hcCCCCCEE
Confidence 9988655443 3468999999999776 556654 788999999999875 777788755 446799999
Q ss_pred EcCCccccccCccccccCCCcceEeCCCCcCccccc-cc-----------------------------------------
Q psy6452 447 HMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQ-DF----------------------------------------- 484 (594)
Q Consensus 447 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~-~~----------------------------------------- 484 (594)
++++|.+++..|..+..+++|++|++++|.+..... .+
T Consensus 520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp ECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred ECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999986542111 00
Q ss_pred ------------------ccccccCcccccCCCCCcEEeCccccCc-cccccccCCCCCcEEEccCCCCc-ccCccccCC
Q psy6452 485 ------------------VNVLWELPLSILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVY-KLPESFANL 544 (594)
Q Consensus 485 ------------------~n~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 544 (594)
....+.+|..+..+++|+.|+|++|+++ .+|..++++++|+.|+|++|+++ .+|..|+.+
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L 679 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence 0123445667778899999999999999 88999999999999999999999 789999999
Q ss_pred CCCCEEECcCCCCC-ccCcccccCCCCcEEEccCCCCccc
Q psy6452 545 KSLKILDVSYNKLT-MLPDGFVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 545 ~~L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~l~~l 583 (594)
++|++|||++|+++ .+|..+..+++|++|++++|+++..
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence 99999999999999 8899999999999999999998753
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.5e-41 Score=386.83 Aligned_cols=419 Identities=20% Similarity=0.173 Sum_probs=322.2
Q ss_pred hccCccEEecCCCCCcccChhh--hccCcEEEccCccccccccc--cccCCCCCccccCCCCcc-----ccccccccccc
Q psy6452 148 KTEALSTRTFCDHELQSIEDDI--LVQLECLHIDNNKAQEYIVS--MNVDRTPGFKLQNNDNDQ-----NTKVTNAMDIA 218 (594)
Q Consensus 148 ~~~~L~~l~l~~n~l~~ip~~~--l~~L~~L~Ls~N~i~~~~~~--~~~~~l~~l~~~~~~~~~-----~~~~~~~~~l~ 218 (594)
...+|+.+++++|.++...+.+ +++|++|+|++|++++..+. .....++.+.+.+..... ...-...++++
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~ 277 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 277 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECC
T ss_pred cCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECc
Confidence 3456667777777775533333 66777777777777765432 222333333332222111 11234456666
Q ss_pred ccccccccccCccCC-CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCC
Q psy6452 219 MELIDTELNCCNKQY-HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297 (594)
Q Consensus 219 ~n~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l 297 (594)
.|.+.+.++..+... ++|++|+|++|+++...+..|..+++|++|++++|.+++ .+|...+..+++|++|++++|.+
T Consensus 278 ~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG--ELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp SSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE--ECCHHHHTTCTTCCEEECCSSEE
T ss_pred CCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC--cCCHHHHhcCCCCCEEeCcCCcc
Confidence 777777777766654 888888888888887766777888888888888888543 46766677888888888888888
Q ss_pred C-CCC-CcCCCc-CccEEeccCCcccc-CchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCC
Q psy6452 298 S-ELP-DFLNFK-VLKELDISHNNFES-MPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIK 373 (594)
Q Consensus 298 ~-~lp-~~~~l~-~L~~L~Ls~N~l~~-lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 373 (594)
+ .+| .+..++ +|++|++++|.+++ +|..+.. ...++|++|++++|.+++..+..+.++++|++|++++|+++
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~----~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ----NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC----STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh----cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc
Confidence 7 666 466665 88888888888875 5544321 11368999999999999666666779999999999999998
Q ss_pred CCCCccc--cCCccEEeCCCCCCC-CCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCC
Q psy6452 374 ILHKPRC--THTLQTFSMNHNIGM-KIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQN 450 (594)
Q Consensus 374 ~l~~~~~--~~~L~~L~L~~N~~~-~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~ 450 (594)
+..+..+ .++|+.|++++|.+. .+|..+ ..+++|+.|++++|+ +.+.+|..+ ..+++|+.|++++
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~-l~~~~p~~l---------~~l~~L~~L~L~~ 499 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFND-LTGEIPSGL---------SNCTNLNWISLSN 499 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSC-CCSCCCGGG---------GGCTTCCEEECCS
T ss_pred CcccHHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEecCCc-ccCcCCHHH---------hcCCCCCEEEccC
Confidence 7655443 468999999999776 566655 789999999999975 677777654 4567999999999
Q ss_pred ccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCc-ccccc------------
Q psy6452 451 TAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN-CIPED------------ 517 (594)
Q Consensus 451 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~------------ 517 (594)
|++++..|..+..+++|++|++++| ...+.+|..+..+++|+.|++++|.++ .+|..
T Consensus 500 N~l~~~~p~~~~~l~~L~~L~L~~N----------~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 500 NRLTGEIPKWIGRLENLAILKLSNN----------SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSS----------CCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CccCCcCChHHhcCCCCCEEECCCC----------cccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 9999999999999999999999998 677889999999999999999999887 55543
Q ss_pred ----------------------------------------------------------ccCCCCCcEEEccCCCCc-ccC
Q psy6452 518 ----------------------------------------------------------IGNLICLEKLNISHNKVY-KLP 538 (594)
Q Consensus 518 ----------------------------------------------------------~~~l~~L~~L~Ls~N~l~-~lp 538 (594)
+..+++|++|+|++|+++ .+|
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence 334678999999999999 679
Q ss_pred ccccCCCCCCEEECcCCCCC-ccCcccccCCCCcEEEccCCCCcccCHhHHhhhhCC
Q psy6452 539 ESFANLKSLKILDVSYNKLT-MLPDGFVMLSNLTTFYAQRKYWMFLTISLLCYLMGL 594 (594)
Q Consensus 539 ~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 594 (594)
..++.+++|+.|+|++|+|+ .+|..++.+++|++|+|++|+++...+..+..|..|
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence 99999999999999999999 899999999999999999999998777777777654
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.8e-40 Score=369.46 Aligned_cols=473 Identities=16% Similarity=0.150 Sum_probs=282.4
Q ss_pred eceeeeeeecccccccccccccccceeeeceecccccccc-hhhhccCccEEecCCCCCcccChhh---hccCcEEEccC
Q psy6452 105 YGRMICTIMKFGKEITTVLEEDTNSGTQDTITNNSVEMDE-NTVKTEALSTRTFCDHELQSIEDDI---LVQLECLHIDN 180 (594)
Q Consensus 105 ~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~ 180 (594)
.|+++.|.+..-..++..+. .....++...|....++. ...+..+|+.+++++|.++.+++.. +++|++|+|++
T Consensus 5 ~~~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 5 SHEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp BSSEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred ECCeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 35566665544444443322 112223333333223333 3344456777777777777765544 56677777777
Q ss_pred ccccccccc--cccCCCCCccccCCCC-------cccccccccccccccccccccccCccCCCcccEEEccCCCCcccch
Q psy6452 181 NKAQEYIVS--MNVDRTPGFKLQNNDN-------DQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQE 251 (594)
Q Consensus 181 N~i~~~~~~--~~~~~l~~l~~~~~~~-------~~~~~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~ 251 (594)
|+++++++. .....+..+.+..... .....-...++++.|.+....+..+.++++|++|++++|+++.+++
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence 777766532 1222333333322211 1112233455666666766666777777788888888888777776
Q ss_pred Hhhh--cCCCCCEEECCCCCCCCcc------------------------------------------------ccchhhh
Q psy6452 252 SMSQ--KLTNLTVLDLSHNNHQDIN------------------------------------------------FVQESMS 281 (594)
Q Consensus 252 ~~f~--~l~~L~~L~Ls~N~l~~i~------------------------------------------------~l~~~~~ 281 (594)
..|. .+++|++|++++|.++++. .+++..|
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence 6554 3467777777777765421 0112233
Q ss_pred hcCC--CCCEEEcCCCCCCCCC--CcCCCcCccEEeccCCccccCchhhhhcc---------------------------
Q psy6452 282 QKLT--NLIVLDLSHNKLSELP--DFLNFKVLKELDISHNNFESMPLCLQVHF--------------------------- 330 (594)
Q Consensus 282 ~~l~--~L~~L~Ls~N~l~~lp--~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~--------------------------- 330 (594)
..++ +|++|++++|.++.++ .|..+++|++|++++|.++++++..+...
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccCh
Confidence 3333 3888888888887554 47788888888888888876543211100
Q ss_pred -ccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCC--CCCCcccc----CCccEEeCCCCCCCCCCchhhh
Q psy6452 331 -YVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIK--ILHKPRCT----HTLQTFSMNHNIGMKIPEWFWY 403 (594)
Q Consensus 331 -~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~----~~L~~L~L~~N~~~~ip~~~~~ 403 (594)
.....++|++|++++|.+++++...|.++++|++|++++|.++ .++...+. ++|+.|++++|.+..++... +
T Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~-~ 401 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA-F 401 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT-T
T ss_pred hhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh-h
Confidence 1122357888888888888888888888888888888888643 33332222 47888888888777775544 4
Q ss_pred cccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccc--
Q psy6452 404 QEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKS-- 481 (594)
Q Consensus 404 ~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~-- 481 (594)
..+++|+.|++++|. +.+.+|.. .+..+++|++|++++|.+++..+..|..+++|+.|++++|.+....
T Consensus 402 ~~l~~L~~L~L~~N~-l~~~~~~~--------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 472 (680)
T 1ziw_A 402 SWLGHLEVLDLGLNE-IGQELTGQ--------EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472 (680)
T ss_dssp TTCTTCCEEECCSSC-CEEECCSG--------GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS
T ss_pred hCCCCCCEEeCCCCc-CccccCcc--------cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccC
Confidence 678888888888874 44444421 2233455666666666555555545555555555555444221000
Q ss_pred -ccc------------ccccccCc-ccccCCCCCcEEeCccccCccccc---------cccCCCCCcEEEccCCCCcccC
Q psy6452 482 -QDF------------VNVLWELP-LSILYLSSIQELHLSNVQLNCIPE---------DIGNLICLEKLNISHNKVYKLP 538 (594)
Q Consensus 482 -~~~------------~n~~~~ip-~~~~~l~~L~~L~Ls~N~l~~ip~---------~~~~l~~L~~L~Ls~N~l~~lp 538 (594)
..+ .|.+..+| ..+..+++|++|+|++|+++.++. .|.++++|++|+|++|+|+.+|
T Consensus 473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~ 552 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC
Confidence 000 02233333 345666777777777777765421 2566777777777777777776
Q ss_pred c-cccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcccCHhHHh
Q psy6452 539 E-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFLTISLLC 589 (594)
Q Consensus 539 ~-~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l~~~~~~ 589 (594)
. .|.++++|++|+|++|+|+.+|.. |..+++|++|+|++|+++.+++..|.
T Consensus 553 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred HHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 5 577777777777777777777665 66777777788877777777777665
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-39 Score=362.21 Aligned_cols=414 Identities=16% Similarity=0.138 Sum_probs=313.7
Q ss_pred CccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccc
Q psy6452 151 ALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELN 227 (594)
Q Consensus 151 ~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~ 227 (594)
.++.+++++|.++.+++.. +++|++|+|++|+++++.+ ..+.+++.++ .++++.|.+....+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~--------------~L~Ls~n~l~~~~~ 98 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLD--------------TLVLTANPLIFMAE 98 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCC--------------EEECTTCCCSEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeCh-hhccCccccC--------------eeeCCCCcccccCh
Confidence 5679999999999997655 7889999999999988753 3333444433 45556677777778
Q ss_pred cCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCC
Q psy6452 228 CCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLN 305 (594)
Q Consensus 228 ~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~ 305 (594)
..|.++++|++|++++|+|+.+++..|.++++|++|++++|+++++ +...+..+++|++|++++|.++.++ .|..
T Consensus 99 ~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 175 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI---KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175 (606)
T ss_dssp TTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC---CCCTTCCCTTCCEEECCSSCCCEECHHHHHT
T ss_pred hhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCccccc---CcccccCCcccCEEEcccCcccccChhhhhh
Confidence 8889999999999999999999887889999999999999997764 2222345999999999999999775 3788
Q ss_pred CcCcc--EEeccCCccccCchhhhhccc----------------------------------------------cccCCC
Q psy6452 306 FKVLK--ELDISHNNFESMPLCLQVHFY----------------------------------------------VHIPYK 337 (594)
Q Consensus 306 l~~L~--~L~Ls~N~l~~lp~~~~~~~~----------------------------------------------~~~~~~ 337 (594)
+++|+ +|++++|.++++++..+.... ...+.+
T Consensus 176 l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~ 255 (606)
T 3t6q_A 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255 (606)
T ss_dssp TTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred hcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCc
Confidence 88898 899999999886654432110 000126
Q ss_pred cceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCc-cccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcC
Q psy6452 338 HSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKP-RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS 416 (594)
Q Consensus 338 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~ 416 (594)
++.|++++|.++.++...|.++++|++|++++|+++.++.. ...++|++|++++|.+..++... +..+++|+.|++++
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCS
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCC
Confidence 78899999999999988888999999999999999887654 33468999999999888775543 47788888888888
Q ss_pred CCCccCCccHH-Hhhhc-------------c----cccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCc
Q psy6452 417 TDPFFEHLPIW-LLNHM-------------E----LKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDH 478 (594)
Q Consensus 417 n~~~~~~lp~~-~~~~~-------------~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 478 (594)
|. ..+.+|.. +.... . ...+..+++|+.|++++|.+.+..+..|..+++|+.|++++|
T Consensus 335 n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--- 410 (606)
T 3t6q_A 335 NT-KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT--- 410 (606)
T ss_dssp CS-SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC---
T ss_pred CC-cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC---
Confidence 74 33344332 11100 0 112345566666666666666666666666667777777665
Q ss_pred ccccccccccccCcc-cccCCCCCcEEeCccccCccc-cccccCCCCCcEEEccCCCCcc--cC--ccccCCCCCCEEEC
Q psy6452 479 RKSQDFVNVLWELPL-SILYLSSIQELHLSNVQLNCI-PEDIGNLICLEKLNISHNKVYK--LP--ESFANLKSLKILDV 552 (594)
Q Consensus 479 ~~~~~~~n~~~~ip~-~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~--lp--~~~~~l~~L~~L~L 552 (594)
...+..|. .+..+++|++|++++|.++.+ |..+..+++|++|+|++|+++. ++ ..+..+++|++|++
T Consensus 411 -------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 411 -------RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483 (606)
T ss_dssp -------CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred -------cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence 33333343 377889999999999999865 5568899999999999999985 33 46889999999999
Q ss_pred cCCCCCcc-CcccccCCCCcEEEccCCCCcccCHhHHhhhhCC
Q psy6452 553 SYNKLTML-PDGFVMLSNLTTFYAQRKYWMFLTISLLCYLMGL 594 (594)
Q Consensus 553 s~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 594 (594)
++|+++.+ |..+..+++|++|+|++|+++.+++..|..+..|
T Consensus 484 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred CCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence 99999976 5669999999999999999999999888877654
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-39 Score=362.78 Aligned_cols=135 Identities=21% Similarity=0.212 Sum_probs=85.8
Q ss_pred cccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccc-cCcccccCCCCCcEEeCccccCccc-c
Q psy6452 438 GVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLW-ELPLSILYLSSIQELHLSNVQLNCI-P 515 (594)
Q Consensus 438 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~-~ip~~~~~l~~L~~L~Ls~N~l~~i-p 515 (594)
..+++|+.|++++|.+++..+..+..+++|++|++++| ...+ .+|..+..+++|++|+|++|+++.+ |
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----------~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 490 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN----------SFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC----------EEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC----------cCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence 34455555666666555555555555566666666554 2333 2456666677777777777777654 3
Q ss_pred ccccCCCCCcEEEccCCCCccc-CccccCCCCCCEEECcCCCCCccCcccccCC-CCcEEEccCCCCcc
Q psy6452 516 EDIGNLICLEKLNISHNKVYKL-PESFANLKSLKILDVSYNKLTMLPDGFVMLS-NLTTFYAQRKYWMF 582 (594)
Q Consensus 516 ~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~-~L~~L~L~~N~l~~ 582 (594)
..+..+++|++|+|++|+++.+ |..|..+++|++|+|++|+|+.+|..+..++ +|++|++++|++..
T Consensus 491 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred hhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence 4466777777777777777755 5566777777777777777777766666665 47777777777664
No 7
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.8e-39 Score=357.61 Aligned_cols=339 Identities=21% Similarity=0.232 Sum_probs=189.1
Q ss_pred cccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCC-CCCCC--C
Q psy6452 226 LNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNK-LSELP--D 302 (594)
Q Consensus 226 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp--~ 302 (594)
.+..|.++++|++|+|++|+++.+++..|.++++|++|++++|.++++. + +..++.+++|++|++++|. +..+| .
T Consensus 66 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 143 (549)
T 2z81_A 66 EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG-V-TSLFPNLTNLQTLRIGNVETFSEIRRID 143 (549)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC-S-SCSCTTCTTCCEEEEEESSSCCEECTTT
T ss_pred ChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc-h-hhhhhccCCccEEECCCCccccccCHhh
Confidence 3344555666666666666666666665666666666666666654321 1 1234556666666666665 44444 3
Q ss_pred cCCCcCccEEeccCCcccc-Cchhhhhcc------------------ccccCCCcceEEcCCCCCCCCC---hhhhccCC
Q psy6452 303 FLNFKVLKELDISHNNFES-MPLCLQVHF------------------YVHIPYKHSQSDISHNNFESMP---LCLQVHFC 360 (594)
Q Consensus 303 ~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~------------------~~~~~~~L~~L~Ls~N~l~~i~---~~~~~~l~ 360 (594)
|.++++|++|++++|.+++ +|..+.... .....++|++|++++|.+++++ ......++
T Consensus 144 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 223 (549)
T 2z81_A 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223 (549)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCC
T ss_pred hhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhh
Confidence 5566666666666666654 333222110 0011245666666666665532 11111222
Q ss_pred CCcEEECC----------------------------CCCCCCCCCc----------------------------------
Q psy6452 361 KLVKLDIS----------------------------HNQIKILHKP---------------------------------- 378 (594)
Q Consensus 361 ~L~~L~Ls----------------------------~N~l~~l~~~---------------------------------- 378 (594)
+|+.|+++ +|.+.++...
T Consensus 224 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~ 303 (549)
T 2z81_A 224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303 (549)
T ss_dssp CCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCC
T ss_pred cccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccch
Confidence 33333332 2222211000
Q ss_pred ---cccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccc
Q psy6452 379 ---RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVM 455 (594)
Q Consensus 379 ---~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 455 (594)
...++|+.|++++|.+..+|..+ +..+++|+.|++++|+ +.+.+|... ..+..+++|++|++++|.+++
T Consensus 304 ~~~~~~~~L~~L~l~~n~l~~ip~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~------~~~~~l~~L~~L~Ls~N~l~~ 375 (549)
T 2z81_A 304 TVYSLLEKVKRITVENSKVFLVPCSF-SQHLKSLEFLDLSENL-MVEEYLKNS------ACKGAWPSLQTLVLSQNHLRS 375 (549)
T ss_dssp HHHHHSTTCCEEEEESSCCCCCCHHH-HHHCTTCCEEECCSSC-CCHHHHHHH------TCTTSSTTCCEEECTTSCCCC
T ss_pred hhhhhcccceEEEeccCccccCCHHH-HhcCccccEEEccCCc-cccccccch------hhhhccccCcEEEccCCcccc
Confidence 11236778888888888888766 4578889999998875 444443221 123556788888888888877
Q ss_pred cCc--cccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCC
Q psy6452 456 SNV--SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNK 533 (594)
Q Consensus 456 ~~~--~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~ 533 (594)
..+ ..+..+++|++|++++| .+..+|..+..+++|++|++++|.|+.+|..+. ++|++|+|++|+
T Consensus 376 ~~~~~~~~~~l~~L~~L~Ls~N-----------~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~ 442 (549)
T 2z81_A 376 MQKTGEILLTLKNLTSLDISRN-----------TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNN 442 (549)
T ss_dssp HHHHHHHGGGCTTCCEEECTTC-----------CCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC--TTCSEEECCSSC
T ss_pred cccchhhhhcCCCCCEEECCCC-----------CCccCChhhcccccccEEECCCCCcccccchhc--CCceEEECCCCC
Confidence 643 45788888888888885 445677777777888888888888876665432 344444444444
Q ss_pred CcccCccccCCCCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCcccCHhHHhhh
Q psy6452 534 VYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLTISLLCYL 591 (594)
Q Consensus 534 l~~lp~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~~~~~~~l 591 (594)
|+.++ ..+++|++|+|++|+|+.||. ...+++|++|+|++|+++.+++..|..+
T Consensus 443 l~~~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 496 (549)
T 2z81_A 443 LDSFS---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRL 496 (549)
T ss_dssp CSCCC---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGC
T ss_pred hhhhc---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcC
Confidence 44432 234445555555555554443 2344445555555555554444444433
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.8e-40 Score=366.45 Aligned_cols=329 Identities=16% Similarity=0.219 Sum_probs=235.3
Q ss_pred cccCcc--CCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCC-CCCccccchhhhhcC------CCCCEEEcCCCC
Q psy6452 226 LNCCNK--QYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNN-HQDINFVQESMSQKL------TNLIVLDLSHNK 296 (594)
Q Consensus 226 ~~~~~~--~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~i~~l~~~~~~~l------~~L~~L~Ls~N~ 296 (594)
+|..+. ++++|++|+|++|++....+..|.++++|++|++++|+ +++ ..+|..+ ..+ ++|++|++++|+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~-~~lp~~~-~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG-EQLKDDW-QALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH-HHHHHHH-HHHHHSGGGGTCCEEECCSSC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc-ccchHHH-HhhhccccCCCCCEEECCCCc
Confidence 455555 67777777777777765555566777777777777776 543 0244433 333 777777777777
Q ss_pred CCCCCC---cCCCcCccEEeccCCccc-cCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCC-CcEEECCCCC
Q psy6452 297 LSELPD---FLNFKVLKELDISHNNFE-SMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCK-LVKLDISHNQ 371 (594)
Q Consensus 297 l~~lp~---~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~-L~~L~Ls~N~ 371 (594)
++.+|. +..+++|++|++++|.++ .+| .+.. .++|+.|++++|.++.+|.. +.++++ |++|++++|.
T Consensus 317 l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~------l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS------EIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAHNK 388 (636)
T ss_dssp CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE------EEEESEEECCSSEEEECCTT-SEEECTTCCEEECCSSC
T ss_pred CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCC------CCCCCEEECCCCccccccHh-hhhhcccCcEEEccCCc
Confidence 777775 667777777777777777 566 3321 24677777777777776665 446776 7777777777
Q ss_pred CCCCCCccc---cCCccEEeCCCCCCCCC-Cchhhhc-------ccCcccEEECcCCCCccCCccHHHhhhccccccccc
Q psy6452 372 IKILHKPRC---THTLQTFSMNHNIGMKI-PEWFWYQ-------EFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVF 440 (594)
Q Consensus 372 l~~l~~~~~---~~~L~~L~L~~N~~~~i-p~~~~~~-------~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~ 440 (594)
++.++.... .++|+.|++++|.+... |..+ . .+++|+.|++++|. ...+|..+.. .+
T Consensus 389 l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l--~~~~~~~~~~~~L~~L~Ls~N~--l~~lp~~~~~--------~l 456 (636)
T 4eco_A 389 LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF--DPLDPTPFKGINVSSINLSNNQ--ISKFPKELFS--------TG 456 (636)
T ss_dssp CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS--CTTCSSCCCCCCEEEEECCSSC--CCSCCTHHHH--------TT
T ss_pred CcccchhhhhcccCccCEEECcCCcCCCcchhhh--cccccccccCCCCCEEECcCCc--cCcCCHHHHc--------cC
Confidence 776654322 12577777777766543 3322 2 55678888888765 2255544322 34
Q ss_pred CCCcEEEcCCccccccCccccccCC-------CcceEeCCCCcCcccccccccccccCccccc--CCCCCcEEeCccccC
Q psy6452 441 SNLISLHMQNTAAVMSNVSQLKYLK-------NIKYLNCSNDIDHRKSQDFVNVLWELPLSIL--YLSSIQELHLSNVQL 511 (594)
Q Consensus 441 ~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~--~l~~L~~L~Ls~N~l 511 (594)
++|++|++++|.++......+.... +|+.|++++| .+..+|..+. .+++|+.|+|++|+|
T Consensus 457 ~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-----------~l~~lp~~~~~~~l~~L~~L~Ls~N~l 525 (636)
T 4eco_A 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-----------KLTKLSDDFRATTLPYLVGIDLSYNSF 525 (636)
T ss_dssp CCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS-----------CCCBCCGGGSTTTCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC-----------cCCccChhhhhccCCCcCEEECCCCCC
Confidence 5788888888888755544554443 8999999985 4557888887 899999999999999
Q ss_pred ccccccccCCCCCcEEEcc------CCCCc-ccCccccCCCCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCcccC
Q psy6452 512 NCIPEDIGNLICLEKLNIS------HNKVY-KLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLT 584 (594)
Q Consensus 512 ~~ip~~~~~l~~L~~L~Ls------~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~ 584 (594)
+.+|..+..+++|++|+|+ +|++. .+|.++..+++|++|+|++|+|+.||..+. ++|++|+|++|++..++
T Consensus 526 ~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 526 SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp SSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred CCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCcccc
Confidence 9999989999999999995 45555 678889999999999999999999998865 79999999999999888
Q ss_pred HhHHh
Q psy6452 585 ISLLC 589 (594)
Q Consensus 585 ~~~~~ 589 (594)
...++
T Consensus 604 ~~~~~ 608 (636)
T 4eco_A 604 LSYVC 608 (636)
T ss_dssp CTTTH
T ss_pred HHhcc
Confidence 65554
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-38 Score=360.64 Aligned_cols=414 Identities=19% Similarity=0.214 Sum_probs=261.1
Q ss_pred cCccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCccccccccccccccccccccc
Q psy6452 150 EALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTEL 226 (594)
Q Consensus 150 ~~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~ 226 (594)
.+++.+++++|.++.++... +++|++|+|++|+++++.+. .+.+++.++ .++++.|.+....
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~--------------~L~L~~n~l~~l~ 89 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLK--------------VLNLQHNELSQLS 89 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTT-HHHHCTTCC--------------EEECCSSCCCCCC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHH-HHhcccCcC--------------EEECCCCccCccC
Confidence 36778888888888887654 67788888888888776532 222222222 2334444444444
Q ss_pred ccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC----
Q psy6452 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD---- 302 (594)
Q Consensus 227 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~---- 302 (594)
+..|.++++|++|+|++|+++.+++..|.++++|++|++++|.+++ +++..+..+++|++|++++|.++.++.
T Consensus 90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 166 (680)
T 1ziw_A 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS---TKLGTQVQLENLQELLLSNNKIQALKSEELD 166 (680)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSC---CCCCSSSCCTTCCEEECCSSCCCCBCHHHHG
T ss_pred hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccc---cCchhhcccccCCEEEccCCcccccCHHHhh
Confidence 4467777888888888888887777777778888888888887655 344555677888888888888776652
Q ss_pred cCCCcCccEEeccCCccccCchhhhhcc-cc---------------------ccCCCcceEEcCCCCCCCCChhhhccCC
Q psy6452 303 FLNFKVLKELDISHNNFESMPLCLQVHF-YV---------------------HIPYKHSQSDISHNNFESMPLCLQVHFC 360 (594)
Q Consensus 303 ~~~l~~L~~L~Ls~N~l~~lp~~~~~~~-~~---------------------~~~~~L~~L~Ls~N~l~~i~~~~~~~l~ 360 (594)
+..+++|++|++++|.++++++..+... .+ ....+|+.|++++|.++++.+..|.+++
T Consensus 167 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~ 246 (680)
T 1ziw_A 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246 (680)
T ss_dssp GGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG
T ss_pred ccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC
Confidence 2355778888888887777554322110 00 0114677788888887777666666664
Q ss_pred C--CcEEECCCCCCCCCCCccc--cCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhccccc
Q psy6452 361 K--LVKLDISHNQIKILHKPRC--THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKE 436 (594)
Q Consensus 361 ~--L~~L~Ls~N~l~~l~~~~~--~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~ 436 (594)
. |+.|++++|.++++.+..+ .++|++|++++|.+..++... +..+++|+.|++++|. ..+.++..-........
T Consensus 247 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~~~-~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSF-TKQSISLASLPKIDDFS 324 (680)
T ss_dssp GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT-TTTCTTCCEEECTTCB-CCC------CCEECTTT
T ss_pred cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhh-hcCCCCccEEeccchh-hhcccccccccccChhh
Confidence 4 8888888888877665433 457888888888776665433 4677778888777642 22222111111111123
Q ss_pred ccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccc---ccc--------------cccc-ccCcccccCC
Q psy6452 437 NGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKS---QDF--------------VNVL-WELPLSILYL 498 (594)
Q Consensus 437 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~---~~~--------------~n~~-~~ip~~~~~l 498 (594)
+..+++|++|++++|.+++..+..|..+++|++|++++|...... ..+ .|.+ +..|..+..+
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 456788899999999988888888888888888888887432110 000 0222 2335567777
Q ss_pred CCCcEEeCccccCc-ccc-ccccCCCCCcEEEccCCCCccc---------------------------CccccCCCCCCE
Q psy6452 499 SSIQELHLSNVQLN-CIP-EDIGNLICLEKLNISHNKVYKL---------------------------PESFANLKSLKI 549 (594)
Q Consensus 499 ~~L~~L~Ls~N~l~-~ip-~~~~~l~~L~~L~Ls~N~l~~l---------------------------p~~~~~l~~L~~ 549 (594)
++|+.|+|++|.++ .+| ..|.++++|++|++++|+++.+ |..|..+++|++
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 88888888888876 455 3467777777777777776544 334445555555
Q ss_pred EECcCCCCCccCcc-cccCCCCcEEEccCCCCccc
Q psy6452 550 LDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 550 L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l 583 (594)
|+|++|+|+.+|.. +..+++|++|++++|+++.+
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCcccc
Confidence 55555555554433 55555555555555555544
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.2e-39 Score=368.80 Aligned_cols=408 Identities=15% Similarity=0.189 Sum_probs=236.0
Q ss_pred cCccEEecCCCCCc-ccChhh--hccCcEEEc-cCccccccccccccCC---CCCcc-----------------------
Q psy6452 150 EALSTRTFCDHELQ-SIEDDI--LVQLECLHI-DNNKAQEYIVSMNVDR---TPGFK----------------------- 199 (594)
Q Consensus 150 ~~L~~l~l~~n~l~-~ip~~~--l~~L~~L~L-s~N~i~~~~~~~~~~~---l~~l~----------------------- 199 (594)
-+++.++|++++++ .||+.+ +++|++|+| ++|.+.+..+...... +....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 45779999999994 888777 999999999 9998877632211000 00000
Q ss_pred -----------ccCCCCcc-cccccccccccccccccccccCccCCCcccEEEccCCCCcc------------------c
Q psy6452 200 -----------LQNNDNDQ-NTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINF------------------V 249 (594)
Q Consensus 200 -----------~~~~~~~~-~~~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------l 249 (594)
........ .......+....|.+.+ +|..+.++++|++|+|++|+|+. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00000000 00000000111134444 55556666666666666666665 4
Q ss_pred chHh-hhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCC-CCC--CCC-c-------CCCcCccEEeccCC
Q psy6452 250 QESM-SQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNK-LSE--LPD-F-------LNFKVLKELDISHN 317 (594)
Q Consensus 250 ~~~~-f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~-l~~--lp~-~-------~~l~~L~~L~Ls~N 317 (594)
|..+ |.++++|++|+|++|.+.+ .+| ..+..+++|++|+|++|+ ++. +|. + ..+++|++|+|++|
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~--~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMT--QLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCC--SCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred ChhhhhccCCCCCEEECcCCCCCc--cCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 4443 3366666666666666543 244 334566666666666665 553 441 2 23336666666666
Q ss_pred ccccCch--hhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCc-cccCC-ccEEeCCCCC
Q psy6452 318 NFESMPL--CLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKP-RCTHT-LQTFSMNHNI 393 (594)
Q Consensus 318 ~l~~lp~--~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~~~-L~~L~L~~N~ 393 (594)
.++.+|. .+... ++|+.|+|++|.++.+| .|..+++|+.|++++|+++.++.. ...++ |+.|++++|.
T Consensus 559 ~L~~ip~~~~l~~L------~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 559 NLEEFPASASLQKM------VKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp CCCBCCCHHHHTTC------TTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC
T ss_pred cCCccCChhhhhcC------CCCCEEECCCCCcccch--hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC
Confidence 6666665 33221 45666666666666555 445566666666666666654432 12234 6666666666
Q ss_pred CCCCCchhhhcccCcccEEECcCCCCccCC----------------------------ccHHHhhhcccccccccCCCcE
Q psy6452 394 GMKIPEWFWYQEFLCLKELNMSSTDPFFEH----------------------------LPIWLLNHMELKENGVFSNLIS 445 (594)
Q Consensus 394 ~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~----------------------------lp~~~~~~~~~~~~~~~~~L~~ 445 (594)
+..+|..+.....++|+.|++++|. +.+. +|..+. ..+++|+.
T Consensus 631 L~~lp~~~~~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~--------~~l~~L~~ 701 (876)
T 4ecn_A 631 LKYIPNIFNAKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF--------ATGSPIST 701 (876)
T ss_dssp CCSCCSCCCTTCSSCEEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH--------HTTCCCSE
T ss_pred CCcCchhhhccccCCCCEEECcCCc-CCCccccchhhhccccCCCcCEEEccCCcCCccCHHHH--------ccCCCCCE
Confidence 6566554422222335666665543 3333 332221 12345666
Q ss_pred EEcCCccccccCccccccC-------CCcceEeCCCCcCcccccccccccccCccccc--CCCCCcEEeCccccCccccc
Q psy6452 446 LHMQNTAAVMSNVSQLKYL-------KNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL--YLSSIQELHLSNVQLNCIPE 516 (594)
Q Consensus 446 L~l~~n~l~~~~~~~~~~l-------~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~--~l~~L~~L~Ls~N~l~~ip~ 516 (594)
|++++|.++......+... ++|+.|++++| .+..+|..+. .+++|+.|+|++|+|+.+|.
T Consensus 702 L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-----------~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~ 770 (876)
T 4ecn_A 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-----------KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT 770 (876)
T ss_dssp EECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-----------CCCCCCGGGSTTTCTTCCEEECCSSCCSSCCC
T ss_pred EECCCCcCCccChHHhccccccccccCCccEEECCCC-----------CCccchHHhhhccCCCcCEEEeCCCCCCccch
Confidence 6666666653333333222 25666666663 3446777776 77888888888888888877
Q ss_pred cccCCCCCcEEEccC------CCCc-ccCccccCCCCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCcccCHhHHh
Q psy6452 517 DIGNLICLEKLNISH------NKVY-KLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLTISLLC 589 (594)
Q Consensus 517 ~~~~l~~L~~L~Ls~------N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~~~~~~ 589 (594)
.+..+++|+.|+|++ |++. .+|.+|..+++|+.|+|++|+|+.||..+. ++|+.|+|++|++..++...|+
T Consensus 771 ~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~ 848 (876)
T 4ecn_A 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISIDVTSVC 848 (876)
T ss_dssp GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCEEECGGGH
T ss_pred hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCccChHHcc
Confidence 777888888888866 5554 567778888888888888888888877754 5888888888888887777766
Q ss_pred hh
Q psy6452 590 YL 591 (594)
Q Consensus 590 ~l 591 (594)
..
T Consensus 849 ~~ 850 (876)
T 4ecn_A 849 PY 850 (876)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.7e-39 Score=357.35 Aligned_cols=405 Identities=16% Similarity=0.128 Sum_probs=251.3
Q ss_pred cCccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCccccccccccccccccccccc
Q psy6452 150 EALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTEL 226 (594)
Q Consensus 150 ~~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~ 226 (594)
..++.+++++|.++.++... +++|++|+|++|+++++.+. .+.+++.++ .++++.|.+....
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~-~~~~l~~L~--------------~L~Ls~n~l~~~~ 96 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK-AWHGLHHLS--------------NLILTGNPIQSFS 96 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCC--------------EEECTTCCCCCCC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHH-HhhchhhcC--------------EeECCCCcccccC
Confidence 35667777777777777644 56777777777777766522 223333332 3444455555555
Q ss_pred ccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcC
Q psy6452 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFL 304 (594)
Q Consensus 227 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~ 304 (594)
+..|.++++|++|+|++|+++.+++..|+++++|++|++++|.++++ .+| ..++.+++|++|++++|+++.++ .|.
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC-KLP-AYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCC-CCC-GGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccce-ech-HhHhhcCCCCEEEccCCcceecChhhhh
Confidence 66677777777777777777777766667777777777777776542 133 34467777777777777777544 344
Q ss_pred CCcCcc----EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCC-------------------------------
Q psy6452 305 NFKVLK----ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFE------------------------------- 349 (594)
Q Consensus 305 ~l~~L~----~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~------------------------------- 349 (594)
.+.+|+ +|++++|.++.++...+.. .+|+.|++++|.+.
T Consensus 175 ~l~~L~~~l~~L~l~~n~l~~~~~~~~~~------~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQG------IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp HHHHCTTCCCEEECTTCCCCEECTTTTTT------CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hhhccccccceeeccCCCcceeCcccccC------ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence 444443 6777777777666544321 14555555555432
Q ss_pred ---------------------------CCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhh
Q psy6452 350 ---------------------------SMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFW 402 (594)
Q Consensus 350 ---------------------------~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~ 402 (594)
+..+. |..+++|+.|++++|.++.++.....++|+.|++++|.++.+|..
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~-- 325 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-- 325 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCC--
T ss_pred ccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccC--
Confidence 00011 334455555555555555554333334566666666655555521
Q ss_pred hcccCcccEEECcCCCCccCCccHHH-------------hhhc--ccccccccCCCcEEEcCCccccccCccccccCCCc
Q psy6452 403 YQEFLCLKELNMSSTDPFFEHLPIWL-------------LNHM--ELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNI 467 (594)
Q Consensus 403 ~~~~~~L~~L~Ls~n~~~~~~lp~~~-------------~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 467 (594)
.+++|+.|++++|.. .+.++... .... ....+..+++|++|++++|.+++.. ..+..+++|
T Consensus 326 --~l~~L~~L~l~~n~~-~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L 401 (606)
T 3vq2_A 326 --DLPFLKSLTLTMNKG-SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEEL 401 (606)
T ss_dssp --CCSSCCEEEEESCSS-CEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTC
T ss_pred --CCCccceeeccCCcC-ccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCC
Confidence 445555555554421 11100000 0000 0011123445555555555554432 445555555
Q ss_pred ceEeCCCCcCcccccccccccccCc-ccccCCCCCcEEeCccccCcc-ccccccCCCCCcEEEccCCCCcc--cCccccC
Q psy6452 468 KYLNCSNDIDHRKSQDFVNVLWELP-LSILYLSSIQELHLSNVQLNC-IPEDIGNLICLEKLNISHNKVYK--LPESFAN 543 (594)
Q Consensus 468 ~~L~Ls~n~~~~~~~~~~n~~~~ip-~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~ 543 (594)
+.|++++| ...+..| ..+..+++|++|++++|.++. +|..+..+++|++|+|++|+++. +|..|..
T Consensus 402 ~~L~l~~n----------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 471 (606)
T 3vq2_A 402 QHLDFQHS----------TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471 (606)
T ss_dssp CEEECTTS----------EEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred CeeECCCC----------ccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc
Confidence 56665554 3333344 467788999999999999985 56668999999999999999985 6778999
Q ss_pred CCCCCEEECcCCCCCcc-CcccccCCCCcEEEccCCCCcccCHhHHhhhhCC
Q psy6452 544 LKSLKILDVSYNKLTML-PDGFVMLSNLTTFYAQRKYWMFLTISLLCYLMGL 594 (594)
Q Consensus 544 l~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 594 (594)
+++|++|+|++|+++.+ |..+..+++|++|++++|+++.+++..|..+.+|
T Consensus 472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence 99999999999999966 5568999999999999999999988888877654
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-38 Score=341.86 Aligned_cols=374 Identities=18% Similarity=0.199 Sum_probs=278.2
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
..+.++++++.+|. ..++|++|+|++|+++++. +..|.++
T Consensus 14 ~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~---------------------------------------~~~~~~l 53 (455)
T 3v47_A 14 NAICINRGLHQVPE-LPAHVNYVDLSLNSIAELN---------------------------------------ETSFSRL 53 (455)
T ss_dssp EEECCSSCCSSCCC-CCTTCCEEECCSSCCCEEC---------------------------------------TTTTSSC
T ss_pred ccCcCCCCcccCCC-CCCccCEEEecCCccCcCC---------------------------------------hhHhccC
Confidence 45566778888887 6678999999999888764 2233456
Q ss_pred CcccEEEccCCCCc-ccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCC--CCC--cCCCcC
Q psy6452 234 HDIFTVNLSHQDIN-FVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE--LPD--FLNFKV 308 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~--~~~l~~ 308 (594)
++|++|+|++|.+. .+++..|.++++|++|+|++|++++ +.+..|+.+++|++|+|++|.+++ ++. |..+++
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 130 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ---LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS 130 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE---ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTT
T ss_pred ccccEEECcCCcccceECcccccccccCCEEeCCCCccCc---cChhhccCcccCCEEeCCCCCCCccccCcccccCccc
Confidence 78888888888876 6667777888888888888888544 445666788888888888888875 223 777888
Q ss_pred ccEEeccCCccccC-chhhhhccccccCCCcceEEcCCCCCCCCChhhhccC--CCCcEEECCCCCCCCCCCccc-----
Q psy6452 309 LKELDISHNNFESM-PLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHF--CKLVKLDISHNQIKILHKPRC----- 380 (594)
Q Consensus 309 L~~L~Ls~N~l~~l-p~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l--~~L~~L~Ls~N~l~~l~~~~~----- 380 (594)
|++|++++|.++++ |..++ ...++|++|++++|.++.+....+..+ .+|+.|++++|.+..++....
T Consensus 131 L~~L~L~~n~l~~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 205 (455)
T 3v47_A 131 LEMLVLRDNNIKKIQPASFF-----LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205 (455)
T ss_dssp CCEEECCSSBCCSCCCCGGG-----GGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHH
T ss_pred CCEEECCCCccCccCccccc-----CCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccc
Confidence 88888888888875 43322 122678888888888887776666555 678888888888877664432
Q ss_pred -----cCCccEEeCCCCCCCCCCchhhh--cccCcccEEECcCCCCccCCccHHHhhhccccccc--ccCCCcEEEcCCc
Q psy6452 381 -----THTLQTFSMNHNIGMKIPEWFWY--QEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENG--VFSNLISLHMQNT 451 (594)
Q Consensus 381 -----~~~L~~L~L~~N~~~~ip~~~~~--~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~--~~~~L~~L~l~~n 451 (594)
.++|+.|++++|.+......... ....+|+.|++++|......+............+. ..++|+.|++++|
T Consensus 206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 285 (455)
T 3v47_A 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285 (455)
T ss_dssp CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS
T ss_pred ccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc
Confidence 25788888888866543322211 12378888888886422211111000000001111 2368999999999
Q ss_pred cccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccc-cccccCCCCCcEEEcc
Q psy6452 452 AAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICLEKLNIS 530 (594)
Q Consensus 452 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls 530 (594)
.+++..+..+..+++|++|++++| ...+..|..+..+++|++|+|++|.|+.+ |..|..+++|++|+|+
T Consensus 286 ~l~~~~~~~~~~l~~L~~L~Ls~n----------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 286 KIFALLKSVFSHFTDLEQLTLAQN----------EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTS----------CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred cccccchhhcccCCCCCEEECCCC----------cccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 999999999999999999999997 44445567888999999999999999977 4568999999999999
Q ss_pred CCCCccc-CccccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcccCH
Q psy6452 531 HNKVYKL-PESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFLTI 585 (594)
Q Consensus 531 ~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l~~ 585 (594)
+|+++.+ |.+|..+++|++|+|++|+|+.+|.. +..+++|++|++++|+++.-.+
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999987 66899999999999999999998776 7899999999999999997554
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.9e-39 Score=361.86 Aligned_cols=346 Identities=17% Similarity=0.166 Sum_probs=285.9
Q ss_pred ccccccccccCccCCCcccEEEccCCCCcc------------------cchHhhh--cCCCCCEEECCCCCCCCccccch
Q psy6452 219 MELIDTELNCCNKQYHDIFTVNLSHQDINF------------------VQESMSQ--KLTNLTVLDLSHNNHQDINFVQE 278 (594)
Q Consensus 219 ~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------l~~~~f~--~l~~L~~L~Ls~N~l~~i~~l~~ 278 (594)
.|.+++ +|..+.++++|++|+|++|+++. +|.. +. ++++|++|+|++|.+.+ .+|
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~--~~p- 266 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLT--KLP- 266 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCS--SCC-
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCc--cCh-
Confidence 356667 88889999999999999999998 6655 46 89999999999999866 466
Q ss_pred hhhhcCCCCCEEEcCCCC-CCC--CC-CcCCC------cCccEEeccCCccccCch--hhhhccccccCCCcceEEcCCC
Q psy6452 279 SMSQKLTNLIVLDLSHNK-LSE--LP-DFLNF------KVLKELDISHNNFESMPL--CLQVHFYVHIPYKHSQSDISHN 346 (594)
Q Consensus 279 ~~~~~l~~L~~L~Ls~N~-l~~--lp-~~~~l------~~L~~L~Ls~N~l~~lp~--~~~~~~~~~~~~~L~~L~Ls~N 346 (594)
..+..+++|++|++++|+ +++ +| .+..+ ++|++|++++|+++.+|. .+... ++|+.|++++|
T Consensus 267 ~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l------~~L~~L~L~~N 340 (636)
T 4eco_A 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM------KKLGMLECLYN 340 (636)
T ss_dssp TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTC------TTCCEEECCSC
T ss_pred HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccC------CCCCEEeCcCC
Confidence 455799999999999998 885 77 35554 999999999999999997 55432 68999999999
Q ss_pred CCC-CCChhhhccCCCCcEEECCCCCCCCCCCc-cccCC-ccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCC
Q psy6452 347 NFE-SMPLCLQVHFCKLVKLDISHNQIKILHKP-RCTHT-LQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEH 423 (594)
Q Consensus 347 ~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~~~-L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~ 423 (594)
.++ .+| .|..+++|++|++++|+++.++.. ...++ |+.|++++|.+..+|..+....+++|+.|++++|. +.+.
T Consensus 341 ~l~g~ip--~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~~ 417 (636)
T 4eco_A 341 QLEGKLP--AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE-IGSV 417 (636)
T ss_dssp CCEEECC--CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSC-TTTT
T ss_pred cCccchh--hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCc-CCCc
Confidence 999 888 677999999999999999977654 23456 99999999999999987644445699999999975 6666
Q ss_pred ccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccC------
Q psy6452 424 LPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY------ 497 (594)
Q Consensus 424 lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~------ 497 (594)
+|..+.... ...-.+.+|++|++++|.++......+..+++|++|++++| .+..+|..+..
T Consensus 418 ~p~~l~~~~--~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-----------~l~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 418 DGKNFDPLD--PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-----------MLTEIPKNSLKDENENF 484 (636)
T ss_dssp TTCSSCTTC--SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-----------CCSBCCSSSSEETTEEC
T ss_pred chhhhcccc--cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC-----------CCCCcCHHHhccccccc
Confidence 664332100 00014568999999999999777777788999999999996 33456654432
Q ss_pred --CCCCcEEeCccccCcccccccc--CCCCCcEEEccCCCCcccCccccCCCCCCEEECc------CCCCC-ccCccccc
Q psy6452 498 --LSSIQELHLSNVQLNCIPEDIG--NLICLEKLNISHNKVYKLPESFANLKSLKILDVS------YNKLT-MLPDGFVM 566 (594)
Q Consensus 498 --l~~L~~L~Ls~N~l~~ip~~~~--~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls------~N~l~-~ip~~l~~ 566 (594)
+++|++|+|++|+|+.+|..+. .+++|++|+|++|+|+.+|..+..+++|++|+|+ +|++. .+|..+..
T Consensus 485 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp TTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred cccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 3499999999999999999886 9999999999999999999999999999999995 56666 78999999
Q ss_pred CCCCcEEEccCCCCcccCHhHHhhh
Q psy6452 567 LSNLTTFYAQRKYWMFLTISLLCYL 591 (594)
Q Consensus 567 l~~L~~L~L~~N~l~~l~~~~~~~l 591 (594)
+++|++|+|++|+++.+|..++..|
T Consensus 565 l~~L~~L~Ls~N~l~~ip~~~~~~L 589 (636)
T 4eco_A 565 CPSLTQLQIGSNDIRKVNEKITPNI 589 (636)
T ss_dssp CSSCCEEECCSSCCCBCCSCCCTTC
T ss_pred CCCCCEEECCCCcCCccCHhHhCcC
Confidence 9999999999999999998766444
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-38 Score=350.00 Aligned_cols=400 Identities=18% Similarity=0.193 Sum_probs=260.5
Q ss_pred CccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccc
Q psy6452 151 ALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELN 227 (594)
Q Consensus 151 ~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~ 227 (594)
.++.+++++|.++.++... +++|++|+|++|+++++++ ..+.+++.++ .++++.|.+....+
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~--------------~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLS--------------TLILTGNPIQSLAL 93 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECT-TTTTTCTTCC--------------EEECTTCCCCEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCc-ccccCchhCC--------------EEeCcCCcCCccCH
Confidence 5778999999998888654 7789999999999988763 3333444433 34445555666666
Q ss_pred cCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCC
Q psy6452 228 CCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLN 305 (594)
Q Consensus 228 ~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~ 305 (594)
..|.++++|++|++++|+++.++...|.++++|++|++++|.++++. +| ..++.+++|++|++++|.++.++ .+..
T Consensus 94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-lp-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 171 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (570)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC-CC-GGGGGCTTCCEEECTTSCCCEECGGGGHH
T ss_pred hhhcCccccccccccccccccCCCccccccccccEEecCCCccceec-Ch-hhhcccCCCCEEeCcCCccceecHHHccc
Confidence 77888889999999999888888766888889999999998876532 34 34578889999999999888664 4667
Q ss_pred CcCc----cEEeccCCccccCchhhhhcc---------------------------------------------------
Q psy6452 306 FKVL----KELDISHNNFESMPLCLQVHF--------------------------------------------------- 330 (594)
Q Consensus 306 l~~L----~~L~Ls~N~l~~lp~~~~~~~--------------------------------------------------- 330 (594)
+++| ++|++++|.++.+++..+...
T Consensus 172 l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 251 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251 (570)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTT
T ss_pred hhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhh
Confidence 7777 788999998887654332110
Q ss_pred -------------------------ccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCcc
Q psy6452 331 -------------------------YVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQ 385 (594)
Q Consensus 331 -------------------------~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~ 385 (594)
.....++|+.|++++|.++.++.... .+ +|+.|++++|.++.++.. ..++|+
T Consensus 252 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~-~~-~L~~L~l~~n~~~~l~~~-~l~~L~ 328 (570)
T 2z63_A 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY-NF-GWQHLELVNCKFGQFPTL-KLKSLK 328 (570)
T ss_dssp GGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCS-CC-CCSEEEEESCBCSSCCBC-BCSSCC
T ss_pred ccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhc-cC-CccEEeeccCcccccCcc-cccccC
Confidence 00112456666666666666665543 44 677777777766655442 233444
Q ss_pred EEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCC--ccHHHhhhccc--------------ccccccCCCcEEEcC
Q psy6452 386 TFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEH--LPIWLLNHMEL--------------KENGVFSNLISLHMQ 449 (594)
Q Consensus 386 ~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~--lp~~~~~~~~~--------------~~~~~~~~L~~L~l~ 449 (594)
.|++++|.+...... ..+++|+.|++++|. +.+. .|..+.....+ ..+..+++|+.|+++
T Consensus 329 ~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~ 404 (570)
T 2z63_A 329 RLTFTSNKGGNAFSE---VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404 (570)
T ss_dssp EEEEESCBSCCBCCC---CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECT
T ss_pred EEeCcCCcccccccc---ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEcc
Confidence 444444433222211 345555555555543 1111 12222111000 013345566666666
Q ss_pred CccccccCc-cccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCc--cccccccCCCCCcE
Q psy6452 450 NTAAVMSNV-SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN--CIPEDIGNLICLEK 526 (594)
Q Consensus 450 ~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~ 526 (594)
+|.+.+..+ ..+..+++|++|++++| ...+..|..+..+++|++|++++|.++ .+|..+..+++|++
T Consensus 405 ~n~l~~~~~~~~~~~l~~L~~L~l~~n----------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~ 474 (570)
T 2z63_A 405 HSNLKQMSEFSVFLSLRNLIYLDISHT----------HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474 (570)
T ss_dssp TSEEESCTTSCTTTTCTTCCEEECTTS----------CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CCccccccchhhhhcCCCCCEEeCcCC----------cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence 666655544 34566666666666665 334445666777788888888888776 57777788888888
Q ss_pred EEccCCCCccc-CccccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcccC
Q psy6452 527 LNISHNKVYKL-PESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFLT 584 (594)
Q Consensus 527 L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l~ 584 (594)
|+|++|+++.+ |.+|..+++|++|++++|+++.+|.. +..+++|++|++++|+++.-.
T Consensus 475 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred EECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 88888888866 55777788888888888888866544 777888888888888877543
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=343.52 Aligned_cols=385 Identities=19% Similarity=0.205 Sum_probs=244.1
Q ss_pred chhhhccCccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCccc----------cc
Q psy6452 144 ENTVKTEALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQN----------TK 210 (594)
Q Consensus 144 ~~~~~~~~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~----------~~ 210 (594)
.......+|+.+++++|+++.+++.. +++|++|+|++|+++++++ ..+.+++.++...+..... ..
T Consensus 46 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH-hhhcCccccccccccccccccCCCccccccc
Confidence 34455668889999999999988765 6789999999999988763 2333444443332222111 11
Q ss_pred cccccccccccccc-ccccCccCCCcccEEEccCCCCcccchHhhhcCCCC----CEEECCCCCCCCccccchhhhhcCC
Q psy6452 211 VTNAMDIAMELIDT-ELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNL----TVLDLSHNNHQDINFVQESMSQKLT 285 (594)
Q Consensus 211 ~~~~~~l~~n~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L----~~L~Ls~N~l~~i~~l~~~~~~~l~ 285 (594)
-...++++.|.+.. .++..+.++++|++|++++|+++.+++..|..+++| ++|++++|.+++ +++..|...
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~---~~~~~~~~~- 200 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF---IQPGAFKEI- 200 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE---ECTTTTTTC-
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee---cCHHHhccC-
Confidence 23334444444443 345555556666666666666665555555555555 566666665433 222222211
Q ss_pred CCCEEEcCCCCC----------------------------------------------------------C-CCC-CcCC
Q psy6452 286 NLIVLDLSHNKL----------------------------------------------------------S-ELP-DFLN 305 (594)
Q Consensus 286 ~L~~L~Ls~N~l----------------------------------------------------------~-~lp-~~~~ 305 (594)
+|+.|++++|.. . .++ .|..
T Consensus 201 ~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~ 280 (570)
T 2z63_A 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280 (570)
T ss_dssp EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG
T ss_pred cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC
Confidence 233333332210 0 000 1233
Q ss_pred CcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhh-------------------ccCCCCcEEE
Q psy6452 306 FKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQ-------------------VHFCKLVKLD 366 (594)
Q Consensus 306 l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~-------------------~~l~~L~~L~ 366 (594)
+++|++|++++|.++.+|..+. . . +|++|++++|.+..++...+ ..+++|++|+
T Consensus 281 l~~L~~L~l~~~~l~~l~~~~~-----~-~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~ 353 (570)
T 2z63_A 281 LTNVSSFSLVSVTIERVKDFSY-----N-F-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353 (570)
T ss_dssp GTTCSEEEEESCEECSCCBCCS-----C-C-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEE
T ss_pred cCcccEEEecCccchhhhhhhc-----c-C-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEe
Confidence 4555556666665555554321 1 1 45555555555554443211 3556666666
Q ss_pred CCCCCCCCCC--Cc--cccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCC
Q psy6452 367 ISHNQIKILH--KP--RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSN 442 (594)
Q Consensus 367 Ls~N~l~~l~--~~--~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~ 442 (594)
+++|.++.+. +. ...++|+.|++++|.+..++.. +..+++|+.|++++|. +.+..| ...+..+++
T Consensus 354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~--------~~~~~~l~~ 422 (570)
T 2z63_A 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSN-LKQMSE--------FSVFLSLRN 422 (570)
T ss_dssp CCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE--EETCTTCCEEECTTSE-EESCTT--------SCTTTTCTT
T ss_pred CcCCccCccccccccccccCccCEEECCCCcccccccc--ccccCCCCEEEccCCc-cccccc--------hhhhhcCCC
Confidence 6666665542 11 2234666666666666666554 3566677777777653 222111 123456789
Q ss_pred CcEEEcCCccccccCccccccCCCcceEeCCCCcCccccccccccc-ccCcccccCCCCCcEEeCccccCccc-cccccC
Q psy6452 443 LISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVL-WELPLSILYLSSIQELHLSNVQLNCI-PEDIGN 520 (594)
Q Consensus 443 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~-~~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~ 520 (594)
|++|++++|.+.+..+..+..+++|++|++++| ... +.+|..+..+++|++|+|++|+++.+ |..|..
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----------~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 492 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN----------SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTC----------EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCC----------cCccccchhhhhcccCCCEEECCCCccccCChhhhhc
Confidence 999999999999999999999999999999997 333 46888999999999999999999977 677999
Q ss_pred CCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCC-ccC
Q psy6452 521 LICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLT-MLP 561 (594)
Q Consensus 521 l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~-~ip 561 (594)
+++|++|+|++|+++.++. .|..+++|+.|++++|+++ .+|
T Consensus 493 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 9999999999999998865 7899999999999999999 444
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.2e-38 Score=356.78 Aligned_cols=383 Identities=16% Similarity=0.152 Sum_probs=305.9
Q ss_pred CCCcccChhh--hccCcEEEccCccccc------------------cccccccCCCCCccccCCCCcccccccccccccc
Q psy6452 160 HELQSIEDDI--LVQLECLHIDNNKAQE------------------YIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAM 219 (594)
Q Consensus 160 n~l~~ip~~~--l~~L~~L~Ls~N~i~~------------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 219 (594)
|+++.||..+ +++|++|+|++|+|++ ++....+..++. +..++++.
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~--------------L~~L~Ls~ 500 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD--------------LTDVELYN 500 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT--------------CCEEEEES
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCC--------------CCEEECcC
Confidence 5566688877 8999999999999998 442222223333 33556677
Q ss_pred cccccccccCccCCCcccEEEccCCC-Ccc--cchHh------hhcCCCCCEEECCCCCCCCccccch-hhhhcCCCCCE
Q psy6452 220 ELIDTELNCCNKQYHDIFTVNLSHQD-INF--VQESM------SQKLTNLTVLDLSHNNHQDINFVQE-SMSQKLTNLIV 289 (594)
Q Consensus 220 n~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~--l~~~~------f~~l~~L~~L~Ls~N~l~~i~~l~~-~~~~~l~~L~~ 289 (594)
|.+.+.+|..+.++++|+.|+|++|+ ++. +|..+ +..+++|++|+|++|.++. +|. ..+..+++|++
T Consensus 501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~---ip~~~~l~~L~~L~~ 577 (876)
T 4ecn_A 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE---FPASASLQKMVKLGL 577 (876)
T ss_dssp CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB---CCCHHHHTTCTTCCE
T ss_pred CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc---cCChhhhhcCCCCCE
Confidence 77888889999999999999999998 886 55432 2244599999999999764 665 36689999999
Q ss_pred EEcCCCCCCCCCCcCCCcCccEEeccCCccccCchhhhhccccccCCC-cceEEcCCCCCCCCChhhhccCC--CCcEEE
Q psy6452 290 LDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYK-HSQSDISHNNFESMPLCLQVHFC--KLVKLD 366 (594)
Q Consensus 290 L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~-L~~L~Ls~N~l~~i~~~~~~~l~--~L~~L~ 366 (594)
|+|++|.++.+|.|..+++|++|+|++|.++.+|..+... ++ |+.|++++|.++.+|.. +..++ +|+.|+
T Consensus 578 L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l------~~~L~~L~Ls~N~L~~lp~~-~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 578 LDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAF------TDQVEGLGFSHNKLKYIPNI-FNAKSVYVMGSVD 650 (876)
T ss_dssp EECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEE------CTTCCEEECCSSCCCSCCSC-CCTTCSSCEEEEE
T ss_pred EECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhc------cccCCEEECcCCCCCcCchh-hhccccCCCCEEE
Confidence 9999999999999999999999999999999999765432 45 99999999999998854 33444 499999
Q ss_pred CCCCCCCCCCCcc-------ccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccc
Q psy6452 367 ISHNQIKILHKPR-------CTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGV 439 (594)
Q Consensus 367 Ls~N~l~~l~~~~-------~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~ 439 (594)
+++|++++..+.. ...+|+.|++++|.+..+|..+ +..+++|+.|++++|. ...+|..+..... .....
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~-~~~l~~L~~L~Ls~N~--L~~ip~~~~~~~~-~~l~n 726 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL-FATGSPISTIILSNNL--MTSIPENSLKPKD-GNYKN 726 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHH-HHTTCCCSEEECCSCC--CSCCCTTSSSCTT-SCCTT
T ss_pred CcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHH-HccCCCCCEEECCCCc--CCccChHHhcccc-ccccc
Confidence 9999998753321 1248999999999999999887 5689999999999985 3377764432211 01233
Q ss_pred cCCCcEEEcCCccccccCccccc--cCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCcc------ccC
Q psy6452 440 FSNLISLHMQNTAAVMSNVSQLK--YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSN------VQL 511 (594)
Q Consensus 440 ~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~------N~l 511 (594)
+++|+.|++++|.++ ..+..+. .+++|+.|++++| .+..+|..+..+++|+.|+|++ |++
T Consensus 727 l~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N-----------~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYN-----------CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp GGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSS-----------CCSSCCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred cCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCC-----------CCCccchhhhcCCCCCEEECCCCCCcccccc
Confidence 458999999999999 4566665 8999999999996 4445899999999999999987 665
Q ss_pred c-cccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCccC-cccccCCCCcEEEccCCCCcccC
Q psy6452 512 N-CIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLP-DGFVMLSNLTTFYAQRKYWMFLT 584 (594)
Q Consensus 512 ~-~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip-~~l~~l~~L~~L~L~~N~l~~l~ 584 (594)
. .+|..+..+++|+.|+|++|+|+.||..+. ++|+.|+|++|+|..+. ..+.....+..+.|.+|++..|.
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~ 867 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEE
T ss_pred cccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccC
Confidence 5 788899999999999999999999998765 69999999999999764 34666667788888888887664
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8e-38 Score=342.22 Aligned_cols=146 Identities=18% Similarity=0.170 Sum_probs=101.7
Q ss_pred cEEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccC
Q psy6452 153 STRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232 (594)
Q Consensus 153 ~~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~ 232 (594)
+.+++++|+++.||..+.++|++|+|++|+++++++. .+.+++.++ .++++.|.+....+..|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~--------------~L~Ls~n~l~~~~~~~~~~ 67 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTS-DILSLSKLR--------------ILIISHNRIQYLDISVFKF 67 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHH-HHTTCTTCC--------------EEECCSSCCCEEEGGGGTT
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccccChh-hcccccccc--------------EEecCCCccCCcChHHhhc
Confidence 3678888888888887788888888888888876532 222333322 2334444555555666777
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCc--c
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVL--K 310 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L--~ 310 (594)
+++|++|+|++|+|+.++.. .+++|++|+|++|.++++. +| ..|+.+++|++|++++|.++. ..+..+++| +
T Consensus 68 l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~-~p-~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~ 141 (520)
T 2z7x_B 68 NQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALP-IC-KEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNIS 141 (520)
T ss_dssp CTTCCEEECCSSCCCEEECC---CCCCCSEEECCSSCCSSCC-CC-GGGGGCTTCCEEEEEESSCCG-GGGGGGTTSCEE
T ss_pred ccCCCEEecCCCceeecCcc---ccCCccEEeccCCcccccc-ch-hhhccCCcceEEEecCcccch-hhccccccceee
Confidence 78888888888888877764 6788888888888866531 22 445778888888888888775 345666666 8
Q ss_pred EEeccCCcc
Q psy6452 311 ELDISHNNF 319 (594)
Q Consensus 311 ~L~Ls~N~l 319 (594)
+|++++|.+
T Consensus 142 ~L~l~~n~l 150 (520)
T 2z7x_B 142 KVLLVLGET 150 (520)
T ss_dssp EEEEEECTT
T ss_pred EEEeecccc
Confidence 888888877
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.5e-37 Score=342.87 Aligned_cols=190 Identities=21% Similarity=0.197 Sum_probs=141.5
Q ss_pred cCCccEEeCCCCCCCCCCc-hhhhcccCcccEEECcCCCCccCCccHHHh----------------hhcccccccccCCC
Q psy6452 381 THTLQTFSMNHNIGMKIPE-WFWYQEFLCLKELNMSSTDPFFEHLPIWLL----------------NHMELKENGVFSNL 443 (594)
Q Consensus 381 ~~~L~~L~L~~N~~~~ip~-~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~----------------~~~~~~~~~~~~~L 443 (594)
.++|+.+++++|.+..... ...+..+.+|+.++++.+.. ..++..+. .......+..+.++
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~--~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSE--EEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhcccccc--ccccccccccccccchhhhhcccccccccccccccccc
Confidence 4567777777775543211 11123455666666665431 01111000 11112234567788
Q ss_pred cEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccc-cCcccccCCCCCcEEeCccccCcccc-ccccCC
Q psy6452 444 ISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLW-ELPLSILYLSSIQELHLSNVQLNCIP-EDIGNL 521 (594)
Q Consensus 444 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~-~ip~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l 521 (594)
+.++++.|.+.+..+..+..+++|+.|++++| +... ..|..+..+++|++|+|++|+|+.++ ..|.++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N----------~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l 517 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN----------SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTC----------EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ccccccccccccccccccccchhhhhhhhhhc----------ccccccCchhhhhccccCEEECCCCccCCcChHHHcCC
Confidence 99999999999999999999999999999987 4333 45778889999999999999999774 569999
Q ss_pred CCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCccC-cccccC-CCCcEEEccCCCCcc
Q psy6452 522 ICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLP-DGFVML-SNLTTFYAQRKYWMF 582 (594)
Q Consensus 522 ~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ip-~~l~~l-~~L~~L~L~~N~l~~ 582 (594)
++|++|+|++|+|+.++. .|..+++|++|+|++|+|+.++ ..+..+ ++|++|+|++|+|+.
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 999999999999999855 7999999999999999999774 458887 689999999999985
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.6e-36 Score=323.78 Aligned_cols=349 Identities=21% Similarity=0.264 Sum_probs=292.9
Q ss_pred ccCccEEecCCCCCcccChhh-hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccc
Q psy6452 149 TEALSTRTFCDHELQSIEDDI-LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELN 227 (594)
Q Consensus 149 ~~~L~~l~l~~n~l~~ip~~~-l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~ 227 (594)
..+++.+++.++.++.+|... +++|++|+|++|.++++++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--------------------------------------- 85 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--------------------------------------- 85 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---------------------------------------
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh---------------------------------------
Confidence 346789999999999998644 8899999999999987651
Q ss_pred cCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCc
Q psy6452 228 CCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFK 307 (594)
Q Consensus 228 ~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~ 307 (594)
+.++++|++|++++|+++.+++ +..+++|++|++++|.++++ ++ +..+++|++|++++|.++.++.+..++
T Consensus 86 --~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~---~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~ 156 (466)
T 1o6v_A 86 --LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI---DP--LKNLTNLNRLELSSNTISDISALSGLT 156 (466)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---GG--GTTCTTCSEEEEEEEEECCCGGGTTCT
T ss_pred --hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC---hH--HcCCCCCCEEECCCCccCCChhhccCC
Confidence 2457889999999999999887 78999999999999997764 33 678999999999999999998899999
Q ss_pred CccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEE
Q psy6452 308 VLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTF 387 (594)
Q Consensus 308 ~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L 387 (594)
+|++|+++ |.+..++. + ...++|+.|++++|.++.++. +..+++|++|++++|.++++.+....++|+.|
T Consensus 157 ~L~~L~l~-~~~~~~~~-~------~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 226 (466)
T 1o6v_A 157 SLQQLSFG-NQVTDLKP-L------ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGILTNLDEL 226 (466)
T ss_dssp TCSEEEEE-ESCCCCGG-G------TTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEE
T ss_pred cccEeecC-CcccCchh-h------ccCCCCCEEECcCCcCCCChh--hccCCCCCEEEecCCcccccccccccCCCCEE
Confidence 99999996 56665543 2 233689999999999998864 56899999999999999988777777899999
Q ss_pred eCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCc
Q psy6452 388 SMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNI 467 (594)
Q Consensus 388 ~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 467 (594)
++++|.+..++. +..+++|+.|++++|. +.+. + .+..+++|+.|++++|.+++..+ +..+++|
T Consensus 227 ~l~~n~l~~~~~---l~~l~~L~~L~l~~n~-l~~~-~----------~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 289 (466)
T 1o6v_A 227 SLNGNQLKDIGT---LASLTNLTDLDLANNQ-ISNL-A----------PLSGLTKLTELKLGANQISNISP--LAGLTAL 289 (466)
T ss_dssp ECCSSCCCCCGG---GGGCTTCSEEECCSSC-CCCC-G----------GGTTCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred ECCCCCcccchh---hhcCCCCCEEECCCCc-cccc-h----------hhhcCCCCCEEECCCCccCcccc--ccCCCcc
Confidence 999998888764 4689999999999975 2222 2 14567899999999999988755 8889999
Q ss_pred ceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCC
Q psy6452 468 KYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSL 547 (594)
Q Consensus 468 ~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 547 (594)
+.|++++| .+..++. +..+++|+.|+|++|+++.++. +..+++|+.|++++|+++.++ .+..+++|
T Consensus 290 ~~L~L~~n-----------~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L 355 (466)
T 1o6v_A 290 TNLELNEN-----------QLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNI 355 (466)
T ss_dssp SEEECCSS-----------CCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTC
T ss_pred CeEEcCCC-----------cccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch-hhccCCCC
Confidence 99999996 3344443 7788999999999999998765 788999999999999999884 68899999
Q ss_pred CEEECcCCCCCccCcccccCCCCcEEEccCCCCcccCHhH
Q psy6452 548 KILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLTISL 587 (594)
Q Consensus 548 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~~~~ 587 (594)
+.|++++|+++.++. +..+++|+.|++++|+++.+|...
T Consensus 356 ~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~~~ 394 (466)
T 1o6v_A 356 NWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNY 394 (466)
T ss_dssp CEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCBCC
T ss_pred CEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCchhh
Confidence 999999999997755 889999999999999999877654
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.1e-37 Score=338.00 Aligned_cols=383 Identities=18% Similarity=0.205 Sum_probs=204.7
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
.+++++|+++.||...+++|++|+|++|+|+++++ ..+.+++.++ .++++.|.+....+..|.++
T Consensus 35 ~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~--------------~L~Ls~N~l~~~~~~~~~~l 99 (562)
T 3a79_B 35 MVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRM-PDISFLSELR--------------VLRLSHNRIRSLDFHVFLFN 99 (562)
T ss_dssp EEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCG-GGTTTCTTCC--------------EEECCSCCCCEECTTTTTTC
T ss_pred EEEcCCCCCccCCCCCCCCcCEEECCCCCccccCh-hhhccCCCcc--------------EEECCCCCCCcCCHHHhCCC
Confidence 66777777777777667777777777777776652 2222333322 23333444444445666777
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCc--cE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVL--KE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L--~~ 311 (594)
++|++|+|++|+|+.++.. .+++|++|+|++|+++++. + +..|+.+++|++|++++|.++.. .+..+++| ++
T Consensus 100 ~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~-~-p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~L~L~~ 173 (562)
T 3a79_B 100 QDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLP-V-CKEFGNLTKLTFLGLSAAKFRQL-DLLPVAHLHLSC 173 (562)
T ss_dssp TTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCC-C-CGGGGGCTTCCEEEEECSBCCTT-TTGGGTTSCEEE
T ss_pred CCCCEEECCCCcCCccCcc---ccccCCEEECCCCCccccC-c-hHhhcccCcccEEecCCCccccC-chhhhhhceeeE
Confidence 8888888888888888764 7888888888888865531 1 24567888888888888888753 45555555 88
Q ss_pred EeccCCcc--cc-Cchhhhhcc--------------------ccccCCCcceEEcCCCCCC--CCCh--hhhcc------
Q psy6452 312 LDISHNNF--ES-MPLCLQVHF--------------------YVHIPYKHSQSDISHNNFE--SMPL--CLQVH------ 358 (594)
Q Consensus 312 L~Ls~N~l--~~-lp~~~~~~~--------------------~~~~~~~L~~L~Ls~N~l~--~i~~--~~~~~------ 358 (594)
|++++|.+ ++ .|..+.... ......+|+.+++++|... .++. ..+.+
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~ 253 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence 88888887 54 232222100 0000112333333333200 0000 00001
Q ss_pred ---------------------CCCCcEEECCCCCCCC-CCCccc--------------------------------cCCc
Q psy6452 359 ---------------------FCKLVKLDISHNQIKI-LHKPRC--------------------------------THTL 384 (594)
Q Consensus 359 ---------------------l~~L~~L~Ls~N~l~~-l~~~~~--------------------------------~~~L 384 (594)
.++|++|++++|.+++ ++...+ ..+|
T Consensus 254 L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L 333 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333 (562)
T ss_dssp EEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCC
T ss_pred EEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcc
Confidence 1133444444444331 111110 0124
Q ss_pred cEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccC--ccccc
Q psy6452 385 QTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSN--VSQLK 462 (594)
Q Consensus 385 ~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~ 462 (594)
+.|++++|.+..++. ...+++|+.|++++|. +.+.+|. .+..+++|+.|++++|.+++.. +..+.
T Consensus 334 ~~L~l~~n~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~---------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 400 (562)
T 3a79_B 334 KMLSISDTPFIHMVC---PPSPSSFTFLNFTQNV-FTDSVFQ---------GCSTLKRLQTLILQRNGLKNFFKVALMTK 400 (562)
T ss_dssp SEEEEESSCCCCCCC---CSSCCCCCEEECCSSC-CCTTTTT---------TCCSCSSCCEEECCSSCCCBTTHHHHTTT
T ss_pred eEEEccCCCcccccC---ccCCCCceEEECCCCc-cccchhh---------hhcccCCCCEEECCCCCcCCcccchhhhc
Confidence 444444443322221 1344555555555543 2222222 1233455555666655555432 33455
Q ss_pred cCCCcceEeCCCCcCcccccccccccccCccc-ccCCCCCcEEeCccccCc-cccccccCCCCCcEEEccCCCCcccCcc
Q psy6452 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLS-ILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVYKLPES 540 (594)
Q Consensus 463 ~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~-~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~~lp~~ 540 (594)
.+++|++|++++| ...+.+|.. +..+++|++|++++|+|+ .+|..+. ++|++|+|++|+|+.||..
T Consensus 401 ~l~~L~~L~l~~N----------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~ 468 (562)
T 3a79_B 401 NMSSLETLDVSLN----------SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKD 468 (562)
T ss_dssp TCTTCCEEECTTS----------CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTT
T ss_pred CCCCCCEEECCCC----------cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChh
Confidence 5555666666554 222224432 445566666666666664 3333222 5666666666666666665
Q ss_pred ccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcc
Q psy6452 541 FANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMF 582 (594)
Q Consensus 541 ~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ 582 (594)
+..+++|++|+|++|+|+.+|.. +..+++|++|++++|+|+.
T Consensus 469 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp TTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred hcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 55666666666666666666665 6666666666666666653
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.9e-37 Score=352.68 Aligned_cols=152 Identities=19% Similarity=0.238 Sum_probs=105.1
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCccccccccccccccccccccc-ccCccC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTEL-NCCNKQ 232 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~-~~~~~~ 232 (594)
..+.++++++.||. .+++|++|||++|+|+++.+ ..+..++.++. ++++.+.....+ +..|.+
T Consensus 8 ~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~--------------LdLs~n~~~~~i~~~~f~~ 71 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQL--------------LELGSQYTPLTIDKEAFRN 71 (844)
T ss_dssp EEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECS-SSCSSCCSCSE--------------EEECTTCCCCEECTTTTSS
T ss_pred EEEccCCCCCCCCC-CCCCcCEEECCCCcCCccCh-hHCcccccCeE--------------EeCCCCCCccccCHHHhcC
Confidence 45566777888887 67778888888888877652 33344444332 333334333333 566777
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC---CcCCCcCc
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP---DFLNFKVL 309 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp---~~~~l~~L 309 (594)
+++|++|+|++|.|+.+.+..|.++++|++|+|++|.+++. .++...++.+++|++|+|++|.+++++ .|.++++|
T Consensus 72 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA-VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp CTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC-CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc-cccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 88888888888888888777788888888888888886652 122334677888888888888887653 37788888
Q ss_pred cEEeccCCccccC
Q psy6452 310 KELDISHNNFESM 322 (594)
Q Consensus 310 ~~L~Ls~N~l~~l 322 (594)
++|++++|.++++
T Consensus 151 ~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 151 KSIDFSSNQIFLV 163 (844)
T ss_dssp CEEEEESSCCCCC
T ss_pred CEEECCCCcCCee
Confidence 8888888888764
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.6e-37 Score=352.38 Aligned_cols=443 Identities=16% Similarity=0.126 Sum_probs=236.1
Q ss_pred eceeeeeeecccccccccccccccceeeeceecc-cccccchhhhccCccEEecCCC-CCcccChhh---hccCcEEEcc
Q psy6452 105 YGRMICTIMKFGKEITTVLEEDTNSGTQDTITNN-SVEMDENTVKTEALSTRTFCDH-ELQSIEDDI---LVQLECLHID 179 (594)
Q Consensus 105 ~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~n~-~~~~~~~~~~~~~L~~l~l~~n-~l~~ip~~~---l~~L~~L~Ls 179 (594)
.|+++.|....-..++. +. .....++...|. ....+.......+|+.+++++| .+..|++.. +++|++|+|+
T Consensus 5 ~~~~~dcs~~~L~~vP~-lp--~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 5 DGRIAFYRFCNLTQVPQ-VL--NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp TTEEEEESCCCSSCCCS-SC--TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eceEEEccCCCCCCCCC-CC--CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 45566665444444333 11 112233333343 3333445556678889999888 557775544 7789999999
Q ss_pred CccccccccccccCCCCCccccCCCCcccccccccccccccccccccccC--ccCCCcccEEEccCCCCcccch-Hhhhc
Q psy6452 180 NNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCC--NKQYHDIFTVNLSHQDINFVQE-SMSQK 256 (594)
Q Consensus 180 ~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~--~~~l~~L~~L~Ls~n~l~~l~~-~~f~~ 256 (594)
+|+++++.+. .+.+++.++ .++++.|.+....+.. +..+++|++|+|++|.++.+.. ..|++
T Consensus 82 ~N~l~~~~p~-~~~~l~~L~--------------~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~ 146 (844)
T 3j0a_A 82 SSKIYFLHPD-AFQGLFHLF--------------ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146 (844)
T ss_dssp TCCCCEECTT-SSCSCSSCC--------------CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT
T ss_pred CCcCcccCHh-HccCCcccC--------------EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh
Confidence 9999887532 333333333 3344445555433333 6778888888888888877653 46788
Q ss_pred CCCCCEEECCCCCCCCccccchhhhhcC--CCCCEEEcCCCCCCC-CC-CcCCCcC------ccEEeccCCcccc-Cchh
Q psy6452 257 LTNLTVLDLSHNNHQDINFVQESMSQKL--TNLIVLDLSHNKLSE-LP-DFLNFKV------LKELDISHNNFES-MPLC 325 (594)
Q Consensus 257 l~~L~~L~Ls~N~l~~i~~l~~~~~~~l--~~L~~L~Ls~N~l~~-lp-~~~~l~~------L~~L~Ls~N~l~~-lp~~ 325 (594)
+++|++|+|++|.++++ .+..+..+ ++|+.|++++|.+.. .| .+..+++ |++|++++|.++. ++..
T Consensus 147 L~~L~~L~Ls~N~i~~~---~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 223 (844)
T 3j0a_A 147 LNSLKSIDFSSNQIFLV---CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN 223 (844)
T ss_dssp CSSCCEEEEESSCCCCC---CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSG
T ss_pred CCCCCEEECCCCcCCee---CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHH
Confidence 88888888888886653 23334444 677777777777663 22 2333333 7777777776553 2222
Q ss_pred hhhcc--------------------------------ccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCC
Q psy6452 326 LQVHF--------------------------------YVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIK 373 (594)
Q Consensus 326 ~~~~~--------------------------------~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 373 (594)
+.... ....+.+|+.|++++|.+..++...|..+++|+.|++++|.++
T Consensus 224 ~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 303 (844)
T 3j0a_A 224 FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303 (844)
T ss_dssp GGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC
T ss_pred HHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC
Confidence 21100 0001245666666666666655555556666666666666666
Q ss_pred CCCCccc--cCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCc
Q psy6452 374 ILHKPRC--THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNT 451 (594)
Q Consensus 374 ~l~~~~~--~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n 451 (594)
++.+..+ .++|+.|++++|.+..++... +..+++|+.|++++|+ + ..++. ..+..+++|+.|++++|
T Consensus 304 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~-i-~~~~~--------~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSN-FYGLPKVAYIDLQKNH-I-AIIQD--------QTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp EECTTTTTTCSSCCEEEEESCCCSCCCSCS-CSSCTTCCEEECCSCC-C-CCCCS--------SCSCSCCCCCEEEEETC
T ss_pred CCChHHhcCCCCCCEEECCCCCCCccCHHH-hcCCCCCCEEECCCCC-C-CccCh--------hhhcCCCCCCEEECCCC
Confidence 5544332 345666666666555553322 3455666666666553 1 11111 11122333333333333
Q ss_pred ccc---------------------------------------ccC-ccccccCCCcceEeCCCCcCcccccccccccccC
Q psy6452 452 AAV---------------------------------------MSN-VSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWEL 491 (594)
Q Consensus 452 ~l~---------------------------------------~~~-~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~i 491 (594)
.++ +.. ...+..+++|+.|++++|.+.....
T Consensus 373 ~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------- 443 (844)
T 3j0a_A 373 ALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG--------- 443 (844)
T ss_dssp CSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS---------
T ss_pred CCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccc---------
Confidence 332 211 1123355666666666653321110
Q ss_pred cccccCCCCCcEEeCccccCccc------cccccCCCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCccCccc
Q psy6452 492 PLSILYLSSIQELHLSNVQLNCI------PEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDGF 564 (594)
Q Consensus 492 p~~~~~l~~L~~L~Ls~N~l~~i------p~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ip~~l 564 (594)
+..+..+++|+.|+|++|.++.+ +..|..+++|+.|+|++|+|+.+|. .|..+++|+.|+|++|+|+.+|...
T Consensus 444 ~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 523 (844)
T 3j0a_A 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523 (844)
T ss_dssp SSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCC
T ss_pred ccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhh
Confidence 01122344555555555555422 1235555666666666666665533 4556666666666666666554442
Q ss_pred ccCCCCcEEEccCCCCcccCHhHHh
Q psy6452 565 VMLSNLTTFYAQRKYWMFLTISLLC 589 (594)
Q Consensus 565 ~~l~~L~~L~L~~N~l~~l~~~~~~ 589 (594)
.. ++|+.|+|++|+++.+++..|.
T Consensus 524 ~~-~~L~~L~Ls~N~l~~~~~~~~~ 547 (844)
T 3j0a_A 524 LP-ANLEILDISRNQLLAPNPDVFV 547 (844)
T ss_dssp CC-SCCCEEEEEEECCCCCCSCCCS
T ss_pred hh-ccccEEECCCCcCCCCChhHhC
Confidence 22 5566666666666665555443
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.1e-36 Score=333.41 Aligned_cols=350 Identities=19% Similarity=0.178 Sum_probs=245.3
Q ss_pred ccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCC--C-Cc
Q psy6452 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSEL--P-DF 303 (594)
Q Consensus 227 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~l--p-~~ 303 (594)
+..|.++++|++|+|++|+|+.+++.+|.++++|++|+|++|++++ +++..|+.+++|++|+|++|.++.+ | .+
T Consensus 93 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~---l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~ 169 (635)
T 4g8a_A 93 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS---LENFPIGHLKTLKELNVAHNLIQSFKLPEYF 169 (635)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC---STTCCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred hhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC---CChhhhhcCcccCeeccccCccccCCCchhh
Confidence 4556778999999999999999999999999999999999999665 5677788999999999999999854 4 36
Q ss_pred CCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCC------------
Q psy6452 304 LNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQ------------ 371 (594)
Q Consensus 304 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~------------ 371 (594)
..+++|++|++++|++++++......+ .........++++.|.++.++...+. ...++.+++++|.
T Consensus 170 ~~l~~L~~L~L~~N~l~~~~~~~l~~L-~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~ 247 (635)
T 4g8a_A 170 SNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQG 247 (635)
T ss_dssp GGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHT
T ss_pred ccchhhhhhcccCccccccccccccch-hhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcC
Confidence 788999999999999998754433221 12334456788888888766554432 2223333333332
Q ss_pred ----------------------------------------------------------------------CCCCCCcccc
Q psy6452 372 ----------------------------------------------------------------------IKILHKPRCT 381 (594)
Q Consensus 372 ----------------------------------------------------------------------l~~l~~~~~~ 381 (594)
+..+....+.
T Consensus 248 l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 327 (635)
T 4g8a_A 248 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 327 (635)
T ss_dssp TTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSC
T ss_pred Ccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccc
Confidence 1111111222
Q ss_pred CCccEEeCCCCCCCCCCchh------------------hhcccCcccEEECcCCCCc-cCCccHHHhhhccc--------
Q psy6452 382 HTLQTFSMNHNIGMKIPEWF------------------WYQEFLCLKELNMSSTDPF-FEHLPIWLLNHMEL-------- 434 (594)
Q Consensus 382 ~~L~~L~L~~N~~~~ip~~~------------------~~~~~~~L~~L~Ls~n~~~-~~~lp~~~~~~~~~-------- 434 (594)
..++.|++.+|.+..++... ....+++|+.+++++|... .+..+........+
T Consensus 328 ~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~ 407 (635)
T 4g8a_A 328 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN 407 (635)
T ss_dssp CCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC
T ss_pred hhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccc
Confidence 34555666555444433211 1124667778888776522 22333333222111
Q ss_pred ------ccccccCCCcEEEcCCccccccC-ccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCc
Q psy6452 435 ------KENGVFSNLISLHMQNTAAVMSN-VSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLS 507 (594)
Q Consensus 435 ------~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls 507 (594)
..+..+++|+.+++..+...... ...+..+.+++.++++.| ...+..|..+..+++|+.|+|+
T Consensus 408 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n----------~l~~~~~~~~~~~~~L~~L~Ls 477 (635)
T 4g8a_A 408 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT----------HTRVAFNGIFNGLSSLEVLKMA 477 (635)
T ss_dssp SEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS----------CCEECCTTTTTTCTTCCEEECT
T ss_pred ccccccccccccccccchhhhhcccccccccccccccccccccccccc----------ccccccccccccchhhhhhhhh
Confidence 11234556666666666554433 345667777777777776 4444556677788999999999
Q ss_pred cccCc--cccccccCCCCCcEEEccCCCCccc-CccccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCccc
Q psy6452 508 NVQLN--CIPEDIGNLICLEKLNISHNKVYKL-PESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 508 ~N~l~--~ip~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l 583 (594)
+|.+. .+|..|..+++|++|+|++|+|+.+ |.+|.++++|++|+|++|+|+.++.. |..+++|++|+|++|+|+.+
T Consensus 478 ~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 478 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557 (635)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBC
T ss_pred hcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCC
Confidence 99755 3577799999999999999999988 55899999999999999999988654 99999999999999999999
Q ss_pred CHhHHhhh
Q psy6452 584 TISLLCYL 591 (594)
Q Consensus 584 ~~~~~~~l 591 (594)
++..|..+
T Consensus 558 ~~~~l~~l 565 (635)
T 4g8a_A 558 KKQELQHF 565 (635)
T ss_dssp CSSCTTCC
T ss_pred CHHHHHhh
Confidence 99887655
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.1e-36 Score=333.09 Aligned_cols=398 Identities=16% Similarity=0.202 Sum_probs=288.9
Q ss_pred cchhhhccCccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccc
Q psy6452 143 DENTVKTEALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAM 219 (594)
Q Consensus 143 ~~~~~~~~~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 219 (594)
+.......+|+++++++|+++.+++.. +++|++|+|++|+++++++. .+.+++.++ .++++.
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~--------------~L~Ls~ 107 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS-WFGPLSSLK--------------YLNLMG 107 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH-HHTTCTTCC--------------EEECTT
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH-HhccCCCCc--------------EEECCC
Confidence 334445567888888888888887654 67788888888888876632 233334333 234444
Q ss_pred ccccc-ccccCccCCCcccEEEccCCC-CcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCC
Q psy6452 220 ELIDT-ELNCCNKQYHDIFTVNLSHQD-INFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297 (594)
Q Consensus 220 n~~~~-~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l 297 (594)
|.+.. ..+..+.++++|++|++++|+ +..+++..|.++++|++|++++|.+++ ..+..+..+++|++|++++|.+
T Consensus 108 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN---YQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE---ECTTTTTTCSEEEEEEEECSBS
T ss_pred CcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc---cChhhhhccccCceEecccCcc
Confidence 44443 345667888899999999987 677877778889999999999998655 3345567888899999999988
Q ss_pred CCCCC--cCCCcCccEEeccCCccccCc---hhhhhcc-----------------------ccccCCCcceEEcCCCCCC
Q psy6452 298 SELPD--FLNFKVLKELDISHNNFESMP---LCLQVHF-----------------------YVHIPYKHSQSDISHNNFE 349 (594)
Q Consensus 298 ~~lp~--~~~l~~L~~L~Ls~N~l~~lp---~~~~~~~-----------------------~~~~~~~L~~L~Ls~N~l~ 349 (594)
..+|. +..+++|++|++++|++++++ ..+.... ......+|+.+++++|.+.
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 87764 346899999999999998752 1110000 0011234455555555443
Q ss_pred CCCh-----------------------------------hhhccCCCCcEEECCCCCCCCCCCcc--ccCCccEEeCCCC
Q psy6452 350 SMPL-----------------------------------CLQVHFCKLVKLDISHNQIKILHKPR--CTHTLQTFSMNHN 392 (594)
Q Consensus 350 ~i~~-----------------------------------~~~~~l~~L~~L~Ls~N~l~~l~~~~--~~~~L~~L~L~~N 392 (594)
++.. ..+....+|+.|++++|.++.++... ..++|+.|++++|
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence 3211 11233468999999999998877654 3679999999999
Q ss_pred CCCCC-Cch-hhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceE
Q psy6452 393 IGMKI-PEW-FWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470 (594)
Q Consensus 393 ~~~~i-p~~-~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 470 (594)
.+... |.. ..+..+++|+.|++++|+ ...++... ..+..+++|++|++++|.++. .|..+..+++|++|
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~------~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L 415 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNH--LRSMQKTG------EILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFL 415 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSC--CCCHHHHH------HHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEE
T ss_pred ccccccccchhhhhccccCcEEEccCCc--ccccccch------hhhhcCCCCCEEECCCCCCcc-CChhhcccccccEE
Confidence 87653 221 224678999999999985 22333200 113567899999999999984 56778899999999
Q ss_pred eCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEE
Q psy6452 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKIL 550 (594)
Q Consensus 471 ~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 550 (594)
++++| .+..+|..+ .++|++|+|++|+|+.++ ..+++|++|+|++|+|+.||. ...+++|++|
T Consensus 416 ~Ls~N-----------~l~~l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L 478 (549)
T 2z81_A 416 NLSST-----------GIRVVKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVM 478 (549)
T ss_dssp ECTTS-----------CCSCCCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEE
T ss_pred ECCCC-----------Ccccccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC-cccCccCCEE
Confidence 99996 344555443 268999999999999875 578999999999999999987 5678999999
Q ss_pred ECcCCCCCccCcc-cccCCCCcEEEccCCCCcccC
Q psy6452 551 DVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFLT 584 (594)
Q Consensus 551 ~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l~ 584 (594)
+|++|+|+.+|.. +..+++|++|++++|++..--
T Consensus 479 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 479 KISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp ECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred ecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 9999999977654 899999999999999997643
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=330.34 Aligned_cols=384 Identities=16% Similarity=0.184 Sum_probs=277.4
Q ss_pred cCccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCccccccccccccccccccccc
Q psy6452 150 EALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTEL 226 (594)
Q Consensus 150 ~~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~ 226 (594)
.+++.+++++|.++.+++.. +++|++|+|++|+++++.+ ..+..++.++. ++++.|.+. .+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~--------------L~Ls~N~l~-~l 84 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEY--------------LDLSHNKLV-KI 84 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCE--------------EECCSSCCC-EE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCE--------------EecCCCcee-ec
Confidence 57789999999999988654 7789999999999998753 23444444443 333444444 23
Q ss_pred ccCccCCCcccEEEccCCCCcccc-hHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCC--CEEEcCCCCC--C-CC
Q psy6452 227 NCCNKQYHDIFTVNLSHQDINFVQ-ESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNL--IVLDLSHNKL--S-EL 300 (594)
Q Consensus 227 ~~~~~~l~~L~~L~Ls~n~l~~l~-~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L--~~L~Ls~N~l--~-~l 300 (594)
+.. .+++|++|+|++|+|+.++ +..|+++++|++|++++|.+++ ..+..+++| ++|++++|.+ . ..
T Consensus 85 p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~------~~~~~l~~L~L~~L~l~~n~l~~~~~~ 156 (520)
T 2z7x_B 85 SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK------SSVLPIAHLNISKVLLVLGETYGEKED 156 (520)
T ss_dssp ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG------GGGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch------hhccccccceeeEEEeecccccccccc
Confidence 333 6899999999999999864 4668999999999999999765 335678888 9999999998 3 22
Q ss_pred C-Cc--------------------------CCCcCccEEeccCCc-------cccCchhhhhcc----------------
Q psy6452 301 P-DF--------------------------LNFKVLKELDISHNN-------FESMPLCLQVHF---------------- 330 (594)
Q Consensus 301 p-~~--------------------------~~l~~L~~L~Ls~N~-------l~~lp~~~~~~~---------------- 330 (594)
| .+ ..+++|+.|++++|. +.+..+.+....
T Consensus 157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 236 (520)
T 2z7x_B 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236 (520)
T ss_dssp TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHH
T ss_pred cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHH
Confidence 2 12 235666777776664 211000110000
Q ss_pred -----ccccCCCcceEEcCCCCCC-CCChhhh----ccCCCCcEEECCCCCCCCCCCccc-----cCCccEEeCCCCCCC
Q psy6452 331 -----YVHIPYKHSQSDISHNNFE-SMPLCLQ----VHFCKLVKLDISHNQIKILHKPRC-----THTLQTFSMNHNIGM 395 (594)
Q Consensus 331 -----~~~~~~~L~~L~Ls~N~l~-~i~~~~~----~~l~~L~~L~Ls~N~l~~l~~~~~-----~~~L~~L~L~~N~~~ 395 (594)
......+|++|++++|.++ .+|...| .++++|+.+++++|.+ .++.... ..+|+.|++++|.+.
T Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~ 315 (520)
T 2z7x_B 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMV 315 (520)
T ss_dssp HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccc
Confidence 0001137888888888877 5666553 5778888888888887 4442211 135888888888776
Q ss_pred CCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccc--cCccccccCCCcceEeCC
Q psy6452 396 KIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVM--SNVSQLKYLKNIKYLNCS 473 (594)
Q Consensus 396 ~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls 473 (594)
.++. ...+++|+.|++++|+ +.+.+|. .+..+++|+.|++++|.+++ ..+..+..+++|++|+++
T Consensus 316 ~~~~---~~~l~~L~~L~Ls~n~-l~~~~~~---------~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 316 HMLC---PSKISPFLHLDFSNNL-LTDTVFE---------NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp CCCC---CSSCCCCCEEECCSSC-CCTTTTT---------TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred cccc---hhhCCcccEEEeECCc-cChhhhh---------hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 6552 2578889999999875 4444443 23567789999999999887 445678889999999999
Q ss_pred CCcCcccccccccccccCccc-ccCCCCCcEEeCccccCc-cccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEE
Q psy6452 474 NDIDHRKSQDFVNVLWELPLS-ILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILD 551 (594)
Q Consensus 474 ~n~~~~~~~~~~n~~~~ip~~-~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 551 (594)
+| ...+.+|.. +..+++|++|++++|.++ .+|..+. ++|++|+|++|+|+.+|..+..+++|++|+
T Consensus 383 ~N----------~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~ 450 (520)
T 2z7x_B 383 QN----------SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELN 450 (520)
T ss_dssp SS----------CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEE
T ss_pred CC----------cCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEE
Confidence 86 333336654 667889999999999986 5555554 789999999999999988777999999999
Q ss_pred CcCCCCCccCcc-cccCCCCcEEEccCCCCccc
Q psy6452 552 VSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 552 Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l 583 (594)
|++|+|+.+|.. +..+++|++|++++|+++.-
T Consensus 451 L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 451 VASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 999999999887 88899999999999998863
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.2e-35 Score=315.97 Aligned_cols=338 Identities=19% Similarity=0.266 Sum_probs=279.9
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCC-C-CcCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSEL-P-DFLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p-~~~~l~~L~~ 311 (594)
++|++|+|++|+|+.+++..|.++++|++|++++|.+.+ .+++..|..+++|++|+|++|.++.+ | .|.++++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~--~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL--VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC--EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccc--eECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 689999999999999988889999999999999999754 47778889999999999999999966 4 5889999999
Q ss_pred EeccCCcccc-CchhhhhccccccCCCcceEEcCCCCCCCCCh-hhhccCCCCcEEECCCCCCCCCCCcccc----CCcc
Q psy6452 312 LDISHNNFES-MPLCLQVHFYVHIPYKHSQSDISHNNFESMPL-CLQVHFCKLVKLDISHNQIKILHKPRCT----HTLQ 385 (594)
Q Consensus 312 L~Ls~N~l~~-lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~----~~L~ 385 (594)
|++++|.+++ ++... .+...++|++|++++|.++.+.+ ..|.++++|++|++++|.++++.+..+. .+|+
T Consensus 108 L~L~~n~l~~~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGN----FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp EECTTSCCBTHHHHSS----TTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred EeCCCCCCCccccCcc----cccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 9999999987 33220 01223699999999999998854 4588999999999999999987765442 4899
Q ss_pred EEeCCCCCCCCCCchhh-------hcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccC-
Q psy6452 386 TFSMNHNIGMKIPEWFW-------YQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSN- 457 (594)
Q Consensus 386 ~L~L~~N~~~~ip~~~~-------~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~- 457 (594)
.|++++|.+..++.... ...+++|+.|++++|+ +.+.+|..+.... ...+|+.|++++|...+..
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAI------AGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHT------TTCCEEEEECTTCTTTSCCT
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhccc------cccceeeEeecccccccccc
Confidence 99999998888876431 1255789999999975 6677776665432 2368999999988654432
Q ss_pred ---------cccccc--CCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccc-cccccCCCCCc
Q psy6452 458 ---------VSQLKY--LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICLE 525 (594)
Q Consensus 458 ---------~~~~~~--l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~ 525 (594)
...+.. .++|+.|++++| ...+..|..+..+++|++|+|++|.++.+ |..|..+++|+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n----------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKS----------KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326 (455)
T ss_dssp TCCSSCCCCTTTTGGGTTSCCCEEECCSS----------CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred chhhhccCcccccccccccCceEEEecCc----------cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence 222322 368999999997 55566778889999999999999999977 45699999999
Q ss_pred EEEccCCCCccc-CccccCCCCCCEEECcCCCCCcc-CcccccCCCCcEEEccCCCCcccCHhHHhhhhCC
Q psy6452 526 KLNISHNKVYKL-PESFANLKSLKILDVSYNKLTML-PDGFVMLSNLTTFYAQRKYWMFLTISLLCYLMGL 594 (594)
Q Consensus 526 ~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 594 (594)
+|+|++|+++.+ |..|..+++|++|+|++|+|+.+ |..+..+++|++|+|++|+++.+++..|..+.+|
T Consensus 327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence 999999999988 55889999999999999999976 6679999999999999999999999988877654
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-35 Score=310.72 Aligned_cols=311 Identities=16% Similarity=0.180 Sum_probs=272.3
Q ss_pred CCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCc
Q psy6452 232 QYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVL 309 (594)
Q Consensus 232 ~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L 309 (594)
.+++++.|++++|.++.++...|..+++|++|++++|.+++ +++..|..+++|++|+|++|.++.++ .|.++++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE---IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccc---cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 36899999999999999999999999999999999999654 67778899999999999999999886 37899999
Q ss_pred cEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeC
Q psy6452 310 KELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSM 389 (594)
Q Consensus 310 ~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L 389 (594)
++|++++|.++.+|..++. ..++|++|++++|.++.+++..|.++++|++|++++|+++.++ ....++|+.|++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l 193 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFH-----NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANV 193 (390)
T ss_dssp CEEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEEC
T ss_pred CEEECCCCccCcCCHHHhc-----CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-cccccccceeec
Confidence 9999999999999876542 2379999999999999999998999999999999999999875 345579999999
Q ss_pred CCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcce
Q psy6452 390 NHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKY 469 (594)
Q Consensus 390 ~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 469 (594)
++|.+..++ ..++|+.|++++|. ...+|. ..+++|+.|++++|.+++. ..+..+++|+.
T Consensus 194 ~~n~l~~~~------~~~~L~~L~l~~n~--l~~~~~-----------~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 252 (390)
T 3o6n_A 194 SYNLLSTLA------IPIAVEELDASHNS--INVVRG-----------PVNVELTILKLQHNNLTDT--AWLLNYPGLVE 252 (390)
T ss_dssp CSSCCSEEE------CCSSCSEEECCSSC--CCEEEC-----------CCCSSCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred ccccccccC------CCCcceEEECCCCe--eeeccc-----------cccccccEEECCCCCCccc--HHHcCCCCccE
Confidence 999877654 34689999999985 222232 2356999999999999875 57899999999
Q ss_pred EeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCE
Q psy6452 470 LNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKI 549 (594)
Q Consensus 470 L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 549 (594)
|++++| ...+..|..+..+++|++|+|++|+++.+|..+..+++|++|+|++|+++.+|..+..+++|++
T Consensus 253 L~Ls~n----------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~ 322 (390)
T 3o6n_A 253 VDLSYN----------ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLEN 322 (390)
T ss_dssp EECCSS----------CCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSE
T ss_pred EECCCC----------cCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCE
Confidence 999997 3444457788899999999999999999998888999999999999999999988889999999
Q ss_pred EECcCCCCCccCcccccCCCCcEEEccCCCCcccC
Q psy6452 550 LDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLT 584 (594)
Q Consensus 550 L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~ 584 (594)
|+|++|+|+.++ +..+++|++|++++|+|+.-.
T Consensus 323 L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 323 LYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp EECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred EECCCCccceeC--chhhccCCEEEcCCCCccchh
Confidence 999999999886 678999999999999998643
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.7e-36 Score=319.52 Aligned_cols=381 Identities=19% Similarity=0.210 Sum_probs=237.0
Q ss_pred ccchhhhccCccEEecCCCCCcccChhh--hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccc
Q psy6452 142 MDENTVKTEALSTRTFCDHELQSIEDDI--LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAM 219 (594)
Q Consensus 142 ~~~~~~~~~~L~~l~l~~n~l~~ip~~~--l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 219 (594)
+....++...|+.+.+++|.++.||..+ +++|++|++++|++++..+. .+..+..+......... ..-...++++.
T Consensus 3 ~~p~~~~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~-~~~l~~L~l~~ 80 (454)
T 1jl5_A 3 INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCL-DRQAHELELNN 80 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHH-HHTCSEEECTT
T ss_pred ccccccccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhhh-ccCCCEEEecC
Confidence 3444556677889999999999999877 88999999999999875533 12222222111000000 00112334444
Q ss_pred cccccccccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCC
Q psy6452 220 ELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299 (594)
Q Consensus 220 n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~ 299 (594)
+.+++ ++. ..++|++|++++|+++.++. .+++|++|++++|+++++..+ .++|++|++++|++++
T Consensus 81 ~~l~~-lp~---~~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~-------~~~L~~L~L~~n~l~~ 145 (454)
T 1jl5_A 81 LGLSS-LPE---LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEK 145 (454)
T ss_dssp SCCSC-CCS---CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC-------CTTCCEEECCSSCCSS
T ss_pred Ccccc-CCC---CcCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCC-------CCCCCEEECcCCCCCC
Confidence 44333 122 24689999999999999874 358999999999997775322 2689999999999999
Q ss_pred CCCcCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCcc
Q psy6452 300 LPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPR 379 (594)
Q Consensus 300 lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 379 (594)
+|+|.++++|++|++++|+++++|... .+|++|++++|+++.++ .+.++++|++|++++|++++++.
T Consensus 146 lp~~~~l~~L~~L~l~~N~l~~lp~~~---------~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~-- 212 (454)
T 1jl5_A 146 LPELQNSSFLKIIDVDNNSLKKLPDLP---------PSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPD-- 212 (454)
T ss_dssp CCCCTTCTTCCEEECCSSCCSCCCCCC---------TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCC--
T ss_pred CcccCCCCCCCEEECCCCcCcccCCCc---------ccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCC--
Confidence 999999999999999999999988532 58999999999999987 36799999999999999998654
Q ss_pred ccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCcc
Q psy6452 380 CTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVS 459 (594)
Q Consensus 380 ~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 459 (594)
..++|+.|++++|.+..+|. +..+++|+.|++++|+ + ..+|. .+++|+.|++++|.+++.. .
T Consensus 213 ~~~~L~~L~l~~n~l~~lp~---~~~l~~L~~L~l~~N~-l-~~l~~------------~~~~L~~L~l~~N~l~~l~-~ 274 (454)
T 1jl5_A 213 LPLSLESIVAGNNILEELPE---LQNLPFLTTIYADNNL-L-KTLPD------------LPPSLEALNVRDNYLTDLP-E 274 (454)
T ss_dssp CCTTCCEEECCSSCCSSCCC---CTTCTTCCEEECCSSC-C-SSCCS------------CCTTCCEEECCSSCCSCCC-C
T ss_pred CcCcccEEECcCCcCCcccc---cCCCCCCCEEECCCCc-C-Ccccc------------cccccCEEECCCCcccccC-c
Confidence 34689999999999988885 4689999999999975 2 23442 1246667777776666532 1
Q ss_pred ccccCCCcceEeCCCCcCcccccc---c------ccccccCcccccCC-CCCcEEeCccccCccccccccCCCCCcEEEc
Q psy6452 460 QLKYLKNIKYLNCSNDIDHRKSQD---F------VNVLWELPLSILYL-SSIQELHLSNVQLNCIPEDIGNLICLEKLNI 529 (594)
Q Consensus 460 ~~~~l~~L~~L~Ls~n~~~~~~~~---~------~n~~~~ip~~~~~l-~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L 529 (594)
..++|+.|++++|.+...... . .|.+..++ .+ ++|++|++++|+++.+|.. +++|++|++
T Consensus 275 ---~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~----~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L 344 (454)
T 1jl5_A 275 ---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIELPAL---PPRLERLIA 344 (454)
T ss_dssp ---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEEC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEEC
T ss_pred ---ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCccc----CCcCcCCEEECCCCcccccccc---CCcCCEEEC
Confidence 125566666666533321000 0 01122222 22 5889999999999888764 588999999
Q ss_pred cCCCCcccCccccCCCCCCEEECcCCCCCc---cCcccccC-------------CCCcEEEccCCCCccc
Q psy6452 530 SHNKVYKLPESFANLKSLKILDVSYNKLTM---LPDGFVML-------------SNLTTFYAQRKYWMFL 583 (594)
Q Consensus 530 s~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~---ip~~l~~l-------------~~L~~L~L~~N~l~~l 583 (594)
++|+++.+|. .+++|++|++++|+++. +|.++..+ ++|++|++++|+++.+
T Consensus 345 ~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~ 411 (454)
T 1jl5_A 345 SFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF 411 (454)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------
T ss_pred CCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc
Confidence 9999999887 47899999999999986 56777777 7899999999999853
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.7e-34 Score=311.56 Aligned_cols=340 Identities=21% Similarity=0.253 Sum_probs=290.1
Q ss_pred CcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCCCcccEEEc
Q psy6452 162 LQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNL 241 (594)
Q Consensus 162 l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L 241 (594)
...++...+++++.|++++|.++.++ . +..+++|++|+|
T Consensus 37 ~~~i~~~~l~~l~~L~l~~~~i~~l~---------~--------------------------------~~~l~~L~~L~L 75 (466)
T 1o6v_A 37 TDTVSQTDLDQVTTLQADRLGIKSID---------G--------------------------------VEYLNNLTQINF 75 (466)
T ss_dssp TSEECHHHHHTCCEEECCSSCCCCCT---------T--------------------------------GGGCTTCCEEEC
T ss_pred ccccChhHhccccEEecCCCCCccCc---------c--------------------------------hhhhcCCCEEEC
Confidence 45566666899999999999988765 1 134689999999
Q ss_pred cCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEeccCCcccc
Q psy6452 242 SHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFES 321 (594)
Q Consensus 242 s~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~ 321 (594)
++|.++.+++ |..+++|++|++++|.++++ ++ +..+++|++|++++|.++.++.+..+++|++|++++|.++.
T Consensus 76 s~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~ 148 (466)
T 1o6v_A 76 SNNQLTDITP--LKNLTKLVDILMNNNQIADI---TP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD 148 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---GG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECC
T ss_pred CCCccCCchh--hhccccCCEEECCCCccccC---hh--hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCC
Confidence 9999999987 89999999999999997764 33 68999999999999999999999999999999999999998
Q ss_pred CchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchh
Q psy6452 322 MPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWF 401 (594)
Q Consensus 322 lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~ 401 (594)
++. + ...++|++|+++ |.+..++. +.++++|+.|++++|.++.++.....++|+.|++++|.+..++.
T Consensus 149 ~~~-~------~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-- 216 (466)
T 1o6v_A 149 ISA-L------SGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-- 216 (466)
T ss_dssp CGG-G------TTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred Chh-h------ccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc--
Confidence 873 2 223699999996 56666655 67999999999999999998776677899999999999888876
Q ss_pred hhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccc
Q psy6452 402 WYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKS 481 (594)
Q Consensus 402 ~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~ 481 (594)
+..+++|+.|++++|. + ..+ ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|
T Consensus 217 -~~~l~~L~~L~l~~n~-l-~~~----------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n------ 275 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQ-L-KDI----------GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN------ 275 (466)
T ss_dssp -GGGCTTCCEEECCSSC-C-CCC----------GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS------
T ss_pred -ccccCCCCEEECCCCC-c-ccc----------hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCC------
Confidence 3679999999999985 2 222 234567899999999999988765 889999999999996
Q ss_pred cccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCccC
Q psy6452 482 QDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLP 561 (594)
Q Consensus 482 ~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip 561 (594)
.+..+|. +..+++|+.|++++|+++.++. +..+++|+.|+|++|+++.++. +..+++|+.|++++|+++.++
T Consensus 276 -----~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~ 347 (466)
T 1o6v_A 276 -----QISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS 347 (466)
T ss_dssp -----CCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred -----ccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch
Confidence 3444554 7789999999999999998876 8899999999999999998865 789999999999999999884
Q ss_pred cccccCCCCcEEEccCCCCcccCHhHHhhhhC
Q psy6452 562 DGFVMLSNLTTFYAQRKYWMFLTISLLCYLMG 593 (594)
Q Consensus 562 ~~l~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 593 (594)
.+..+++|++|++++|+++.+++ +..+.+
T Consensus 348 -~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 376 (466)
T 1o6v_A 348 -SLANLTNINWLSAGHNQISDLTP--LANLTR 376 (466)
T ss_dssp -GGTTCTTCCEEECCSSCCCBCGG--GTTCTT
T ss_pred -hhccCCCCCEEeCCCCccCccch--hhcCCC
Confidence 68999999999999999998876 555544
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.6e-35 Score=315.14 Aligned_cols=315 Identities=21% Similarity=0.241 Sum_probs=240.1
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
..+..+++++.||....+++++|+|++|+++++. +..|.++
T Consensus 15 ~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~---------------------------------------~~~~~~l 55 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLN---------------------------------------QDEFASF 55 (477)
T ss_dssp EEECCSCCCSSCCSCCCTTCSEEECCSSCCCEEC---------------------------------------TTTTTTC
T ss_pred EEEeCCCCcCcCCCCCCCCCcEEECCCCccceEC---------------------------------------HhHccCC
Confidence 4566788899999988899999999999999865 2234567
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~ 311 (594)
++|++|+|++|.|+.+.+..|.++++|++|+|++|+++. ++...|..+++|++|+|++|.++.++ .|..+++|++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 132 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL---IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS---CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc---cCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence 899999999999999988889999999999999999655 67788889999999999999999664 5889999999
Q ss_pred EeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCC
Q psy6452 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNH 391 (594)
Q Consensus 312 L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~ 391 (594)
|++++|.++.++...+. ..++|+.|++++|.++.++...|.++++|+.|++++|.++.+....
T Consensus 133 L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~------------ 195 (477)
T 2id5_A 133 LEVGDNDLVYISHRAFS-----GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS------------ 195 (477)
T ss_dssp EEECCTTCCEECTTSST-----TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC------------
T ss_pred EECCCCccceeChhhcc-----CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhh------------
Confidence 99999999987654332 2368999999999999999888889999999999999988765432
Q ss_pred CCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEe
Q psy6452 392 NIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN 471 (594)
Q Consensus 392 N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 471 (594)
+..+++|+.|++++|+ ..+.+|.... ...+|+.|++++|.++......+..+++|+.|+
T Consensus 196 -----------~~~l~~L~~L~l~~~~-~~~~~~~~~~---------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 254 (477)
T 2id5_A 196 -----------FKRLYRLKVLEISHWP-YLDTMTPNCL---------YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLN 254 (477)
T ss_dssp -----------SCSCTTCCEEEEECCT-TCCEECTTTT---------TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEE
T ss_pred -----------cccCcccceeeCCCCc-cccccCcccc---------cCccccEEECcCCcccccCHHHhcCccccCeeE
Confidence 2456677777777653 3344443221 123677788888777776666777777777777
Q ss_pred CCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccc-cccccCCCCCcEEEccCCCCcccCc-cccCCCCCCE
Q psy6452 472 CSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKI 549 (594)
Q Consensus 472 Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~ 549 (594)
+++| ...+..+..+..+++|+.|+|++|+++.+ |..|..+++|++|+|++|+|+.++. .|..+++|+.
T Consensus 255 Ls~n----------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 255 LSYN----------PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp CCSS----------CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred CCCC----------cCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 7775 22222234566677777777777777755 4457777777777777777777755 5667777777
Q ss_pred EECcCCCCC
Q psy6452 550 LDVSYNKLT 558 (594)
Q Consensus 550 L~Ls~N~l~ 558 (594)
|+|++|+++
T Consensus 325 L~l~~N~l~ 333 (477)
T 2id5_A 325 LILDSNPLA 333 (477)
T ss_dssp EECCSSCEE
T ss_pred EEccCCCcc
Confidence 777777776
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8e-35 Score=321.54 Aligned_cols=363 Identities=16% Similarity=0.186 Sum_probs=264.4
Q ss_pred cCccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCccccccccccccccccccccc
Q psy6452 150 EALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTEL 226 (594)
Q Consensus 150 ~~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~ 226 (594)
.+++.+++++|.++.+++.. +++|++|+|++|+|+++.+ ..+.+++.++. ++++.|.+. .+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~--------------L~Ls~N~l~-~l 115 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEY--------------LDVSHNRLQ-NI 115 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCE--------------EECTTSCCC-EE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCE--------------EECCCCcCC-cc
Confidence 45678888888888888654 6788888888888887753 33344444433 334444444 33
Q ss_pred ccCccCCCcccEEEccCCCCcccc-hHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCC--CEEEcCCCCC--CCC-
Q psy6452 227 NCCNKQYHDIFTVNLSHQDINFVQ-ESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNL--IVLDLSHNKL--SEL- 300 (594)
Q Consensus 227 ~~~~~~l~~L~~L~Ls~n~l~~l~-~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L--~~L~Ls~N~l--~~l- 300 (594)
+.. .+++|++|+|++|+++.++ +..|.++++|++|++++|++++. .+..+++| ++|++++|.+ +..
T Consensus 116 p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~------~~~~l~~L~L~~L~L~~n~l~~~~~~ 187 (562)
T 3a79_B 116 SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL------DLLPVAHLHLSCILLDLVSYHIKGGE 187 (562)
T ss_dssp CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT------TTGGGTTSCEEEEEEEESSCCCCSSS
T ss_pred Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC------chhhhhhceeeEEEeecccccccccC
Confidence 333 6899999999999999987 36789999999999999997652 23455666 9999999998 422
Q ss_pred C-Cc--------------------------CCCcCccEEeccCCccc--cCchhhhh-----------------------
Q psy6452 301 P-DF--------------------------LNFKVLKELDISHNNFE--SMPLCLQV----------------------- 328 (594)
Q Consensus 301 p-~~--------------------------~~l~~L~~L~Ls~N~l~--~lp~~~~~----------------------- 328 (594)
| .+ ..+++|+.|++++|... .++..+..
T Consensus 188 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 267 (562)
T 3a79_B 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267 (562)
T ss_dssp CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHH
T ss_pred cccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHH
Confidence 2 12 24556777777776310 00000000
Q ss_pred -ccccccCCCcceEEcCCCCCC-CCChhhhc------------------------------cCCCCcEEECCCCCCCCCC
Q psy6452 329 -HFYVHIPYKHSQSDISHNNFE-SMPLCLQV------------------------------HFCKLVKLDISHNQIKILH 376 (594)
Q Consensus 329 -~~~~~~~~~L~~L~Ls~N~l~-~i~~~~~~------------------------------~l~~L~~L~Ls~N~l~~l~ 376 (594)
........+|++|++++|.++ .+|...|. ...+|+.|++++|.+..+.
T Consensus 268 ~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~ 347 (562)
T 3a79_B 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347 (562)
T ss_dssp HHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred HHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc
Confidence 000001137788888888777 55554421 1246889999999987766
Q ss_pred CccccCCccEEeCCCCCCCC-CCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccc
Q psy6452 377 KPRCTHTLQTFSMNHNIGMK-IPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVM 455 (594)
Q Consensus 377 ~~~~~~~L~~L~L~~N~~~~-ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 455 (594)
.....++|++|++++|.+.. +|..+ ..+++|+.|++++|+ +. .++... ..+..+++|+.|++++|.+++
T Consensus 348 ~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~-l~-~~~~~~------~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 348 CPPSPSSFTFLNFTQNVFTDSVFQGC--STLKRLQTLILQRNG-LK-NFFKVA------LMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTC--CSCSSCCEEECCSSC-CC-BTTHHH------HTTTTCTTCCEEECTTSCCBS
T ss_pred CccCCCCceEEECCCCccccchhhhh--cccCCCCEEECCCCC-cC-Ccccch------hhhcCCCCCCEEECCCCcCCC
Confidence 54567799999999998877 45443 789999999999985 22 222110 123567899999999999998
Q ss_pred -cCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCC
Q psy6452 456 -SNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKV 534 (594)
Q Consensus 456 -~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l 534 (594)
.....+..+++|++|++++| ...+.+|..+. ++|+.|+|++|+|+.+|..+..+++|++|+|++|+|
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n----------~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSN----------MLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL 485 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSS----------CCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCC
T ss_pred ccChhhhcCcccCCEEECCCC----------CCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCC
Confidence 55566899999999999998 34445554443 699999999999999999877999999999999999
Q ss_pred cccCcc-ccCCCCCCEEECcCCCCC
Q psy6452 535 YKLPES-FANLKSLKILDVSYNKLT 558 (594)
Q Consensus 535 ~~lp~~-~~~l~~L~~L~Ls~N~l~ 558 (594)
+.+|.. |..+++|+.|++++|+++
T Consensus 486 ~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 486 KSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCCHHHHhcCCCCCEEEecCCCcC
Confidence 999886 999999999999999998
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.1e-34 Score=318.01 Aligned_cols=309 Identities=16% Similarity=0.184 Sum_probs=270.8
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCcc
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLK 310 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~ 310 (594)
+.+++.|++++|.++.+|+..|..+++|++|+|++|.+++ +++..|..+++|++|+|++|.++.++ .|.++++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE---IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC---CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 5789999999999999999999999999999999999655 66777899999999999999999887 378999999
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCC
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMN 390 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~ 390 (594)
+|+|++|.++.+|..++.. .++|++|++++|.++.+++..|.++++|++|++++|.+++++ ....++|+.|+++
T Consensus 127 ~L~L~~n~l~~l~~~~~~~-----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~ 200 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHN-----TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVS 200 (597)
T ss_dssp EEECCSSCCCCCCTTTTTT-----CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECC
T ss_pred EEEeeCCCCCCCCHHHhcc-----CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcc
Confidence 9999999999998765422 379999999999999999988999999999999999999875 3446799999999
Q ss_pred CCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceE
Q psy6452 391 HNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470 (594)
Q Consensus 391 ~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 470 (594)
+|.+..++ ..++|+.|++++|. ...+|. ...++|+.|++++|.+++. ..+..+++|+.|
T Consensus 201 ~n~l~~l~------~~~~L~~L~ls~n~--l~~~~~-----------~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L 259 (597)
T 3oja_B 201 YNLLSTLA------IPIAVEELDASHNS--INVVRG-----------PVNVELTILKLQHNNLTDT--AWLLNYPGLVEV 259 (597)
T ss_dssp SSCCSEEE------CCTTCSEEECCSSC--CCEEEC-----------SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred cCcccccc------CCchhheeeccCCc--cccccc-----------ccCCCCCEEECCCCCCCCC--hhhccCCCCCEE
Confidence 99877654 35689999999985 222222 2236899999999999874 678999999999
Q ss_pred eCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEE
Q psy6452 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKIL 550 (594)
Q Consensus 471 ~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 550 (594)
++++| ...+..|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+|..+..+++|++|
T Consensus 260 ~Ls~N----------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 260 DLSYN----------ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 329 (597)
T ss_dssp ECCSS----------CCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred ECCCC----------ccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEE
Confidence 99997 45556688899999999999999999999988889999999999999999999989999999999
Q ss_pred ECcCCCCCccCcccccCCCCcEEEccCCCCccc
Q psy6452 551 DVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 551 ~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l 583 (594)
+|++|+|+.+| +..+++|+.|++++|+|+.-
T Consensus 330 ~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 330 YLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp ECCSSCCCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred ECCCCCCCCcC--hhhcCCCCEEEeeCCCCCCh
Confidence 99999999886 67889999999999999753
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-33 Score=303.07 Aligned_cols=343 Identities=21% Similarity=0.249 Sum_probs=247.2
Q ss_pred CccEEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCc
Q psy6452 151 ALSTRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCN 230 (594)
Q Consensus 151 ~L~~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~ 230 (594)
.++.+++++|+++.+|. .+++|++|++++|++++++.. ...++.+ +++.|.+.. ++.
T Consensus 72 ~l~~L~l~~~~l~~lp~-~~~~L~~L~l~~n~l~~lp~~--~~~L~~L-----------------~l~~n~l~~-l~~-- 128 (454)
T 1jl5_A 72 QAHELELNNLGLSSLPE-LPPHLESLVASCNSLTELPEL--PQSLKSL-----------------LVDNNNLKA-LSD-- 128 (454)
T ss_dssp TCSEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCCC--CTTCCEE-----------------ECCSSCCSC-CCS--
T ss_pred CCCEEEecCCccccCCC-CcCCCCEEEccCCcCCccccc--cCCCcEE-----------------ECCCCccCc-ccC--
Confidence 46899999999999987 468899999999999986521 2222222 223333322 111
Q ss_pred cCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCcc
Q psy6452 231 KQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLK 310 (594)
Q Consensus 231 ~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~ 310 (594)
..++|++|++++|+++.++. |.++++|++|++++|+++++ |. ...+|++|++++|+++.+|++.++++|+
T Consensus 129 -~~~~L~~L~L~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l---p~----~~~~L~~L~L~~n~l~~l~~~~~l~~L~ 198 (454)
T 1jl5_A 129 -LPPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKL---PD----LPPSLEFIAAGNNQLEELPELQNLPFLT 198 (454)
T ss_dssp -CCTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSCC---CC----CCTTCCEEECCSSCCSSCCCCTTCTTCC
T ss_pred -CCCCCCEEECcCCCCCCCcc--cCCCCCCCEEECCCCcCccc---CC----CcccccEEECcCCcCCcCccccCCCCCC
Confidence 12689999999999999883 89999999999999997764 43 2369999999999999999999999999
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCC
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMN 390 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~ 390 (594)
+|++++|.++++|. .+.+|++|++++|.++.+|. +..+++|++|++++|++++++. ..++|+.|+++
T Consensus 199 ~L~l~~N~l~~l~~---------~~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~ 265 (454)
T 1jl5_A 199 AIYADNNSLKKLPD---------LPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVR 265 (454)
T ss_dssp EEECCSSCCSSCCC---------CCTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECC
T ss_pred EEECCCCcCCcCCC---------CcCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCcccc--cccccCEEECC
Confidence 99999999999874 23699999999999999984 6799999999999999998764 45799999999
Q ss_pred CCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccC-CCcce
Q psy6452 391 HNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYL-KNIKY 469 (594)
Q Consensus 391 ~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~ 469 (594)
+|.+..+|.. .++|+.|++++|. +.+ +|. ..++|+.|++++|.+++.. .+ ++|++
T Consensus 266 ~N~l~~l~~~-----~~~L~~L~ls~N~-l~~-l~~------------~~~~L~~L~l~~N~l~~i~-----~~~~~L~~ 321 (454)
T 1jl5_A 266 DNYLTDLPEL-----PQSLTFLDVSENI-FSG-LSE------------LPPNLYYLNASSNEIRSLC-----DLPPSLEE 321 (454)
T ss_dssp SSCCSCCCCC-----CTTCCEEECCSSC-CSE-ESC------------CCTTCCEEECCSSCCSEEC-----CCCTTCCE
T ss_pred CCcccccCcc-----cCcCCEEECcCCc-cCc-ccC------------cCCcCCEEECcCCcCCccc-----CCcCcCCE
Confidence 9999998864 4789999999985 222 221 1258999999999998742 23 58999
Q ss_pred EeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcc---cCccccCC--
Q psy6452 470 LNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYK---LPESFANL-- 544 (594)
Q Consensus 470 L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l-- 544 (594)
|++++| .+..+|.. +++|++|++++|+++.+|. .+++|++|++++|+++. +|.++..+
T Consensus 322 L~Ls~N-----------~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~ 384 (454)
T 1jl5_A 322 LNVSNN-----------KLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRM 384 (454)
T ss_dssp EECCSS-----------CCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred EECCCC-----------cccccccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhh
Confidence 999996 34456654 5899999999999999988 57999999999999997 56677766
Q ss_pred -----------CCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCccc
Q psy6452 545 -----------KSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 545 -----------~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l 583 (594)
++|++|++++|+++.+|.- -.+++.|.+.+|.+...
T Consensus 385 n~~~~~i~~~~~~L~~L~ls~N~l~~~~~i---P~sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 385 NSHLAEVPELPQNLKQLHVETNPLREFPDI---PESVEDLRMNSERVVDP 431 (454)
T ss_dssp CC------------------------------------------------
T ss_pred cccccccccccCcCCEEECCCCcCCccccc---hhhHhheeCcCcccCCc
Confidence 8899999999999954321 13567777888877653
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.6e-34 Score=301.76 Aligned_cols=308 Identities=20% Similarity=0.263 Sum_probs=223.6
Q ss_pred hhhccCccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCccccccccccccccccc
Q psy6452 146 TVKTEALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELI 222 (594)
Q Consensus 146 ~~~~~~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~ 222 (594)
.+...+++.+++.++.++.+|... +++|++|+|++|.++++++
T Consensus 41 ~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~---------------------------------- 86 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT---------------------------------- 86 (390)
T ss_dssp SGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECT----------------------------------
T ss_pred ccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccCh----------------------------------
Confidence 344556777888888888888765 5678888888887776541
Q ss_pred ccccccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC-
Q psy6452 223 DTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP- 301 (594)
Q Consensus 223 ~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp- 301 (594)
..|..+++|++|+|++|+++.+++..|.++++|++|++++|.++. ++..+|..+++|++|++++|.++.++
T Consensus 87 -----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---l~~~~~~~l~~L~~L~L~~n~l~~~~~ 158 (390)
T 3o6n_A 87 -----YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS---LPRGIFHNTPKLTTLSMSNNNLERIED 158 (390)
T ss_dssp -----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred -----hhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc---CCHHHhcCCCCCcEEECCCCccCccCh
Confidence 123456778888888888888777777778888888888887553 56666777788888888888877665
Q ss_pred -CcCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc
Q psy6452 302 -DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC 380 (594)
Q Consensus 302 -~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 380 (594)
.|..+++|++|++++|.++.++.. ..++|+.|++++|.++.++ ..++|+.|++++|.++.++.. .
T Consensus 159 ~~~~~l~~L~~L~l~~n~l~~~~~~--------~l~~L~~L~l~~n~l~~~~-----~~~~L~~L~l~~n~l~~~~~~-~ 224 (390)
T 3o6n_A 159 DTFQATTSLQNLQLSSNRLTHVDLS--------LIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGP-V 224 (390)
T ss_dssp TTTSSCTTCCEEECCSSCCSBCCGG--------GCTTCSEEECCSSCCSEEE-----CCSSCSEEECCSSCCCEEECC-C
T ss_pred hhccCCCCCCEEECCCCcCCccccc--------cccccceeecccccccccC-----CCCcceEEECCCCeeeecccc-c
Confidence 367777888888888877766421 1246666666666665443 233566666666666655322 2
Q ss_pred cCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccc
Q psy6452 381 THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQ 460 (594)
Q Consensus 381 ~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 460 (594)
.++|+.|++++|.+..++ .+..+++|+.|++++|.+++..+..
T Consensus 225 ~~~L~~L~l~~n~l~~~~-------------------------------------~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 225 NVELTILKLQHNNLTDTA-------------------------------------WLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp CSSCCEEECCSSCCCCCG-------------------------------------GGGGCTTCSEEECCSSCCCEEESGG
T ss_pred cccccEEECCCCCCcccH-------------------------------------HHcCCCCccEEECCCCcCCCcChhH
Confidence 234444444444443321 2234557777777777788777888
Q ss_pred cccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCcc
Q psy6452 461 LKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPES 540 (594)
Q Consensus 461 ~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~ 540 (594)
|..+++|+.|++++| .+..+|..+..+++|++|+|++|+++.+|..+..+++|++|+|++|+|+.++
T Consensus 268 ~~~l~~L~~L~L~~n-----------~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~-- 334 (390)
T 3o6n_A 268 FVKMQRLERLYISNN-----------RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK-- 334 (390)
T ss_dssp GTTCSSCCEEECCSS-----------CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--
T ss_pred ccccccCCEEECCCC-----------cCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--
Confidence 899999999999995 4555676777889999999999999999988989999999999999999886
Q ss_pred ccCCCCCCEEECcCCCCCc
Q psy6452 541 FANLKSLKILDVSYNKLTM 559 (594)
Q Consensus 541 ~~~l~~L~~L~Ls~N~l~~ 559 (594)
+..+++|+.|++++|+++.
T Consensus 335 ~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 335 LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCTTCCCSEEECCSSCEEH
T ss_pred chhhccCCEEEcCCCCccc
Confidence 7788999999999999983
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.2e-33 Score=290.73 Aligned_cols=306 Identities=19% Similarity=0.217 Sum_probs=260.6
Q ss_pred cCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCcc
Q psy6452 231 KQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLK 310 (594)
Q Consensus 231 ~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~ 310 (594)
..+++|++|+++++.++.++. +..+++|++|++++|.++++ ++ +..+++|++|++++|.++.++.|..+++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~---~~--~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~ 113 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDI---SP--LSNLVKLTNLYIGTNKITDISALQNLTNLR 113 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCC---GG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCS
T ss_pred hhcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccc---hh--hhcCCcCCEEEccCCcccCchHHcCCCcCC
Confidence 457899999999999999976 78999999999999997764 44 689999999999999999999999999999
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCC
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMN 390 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~ 390 (594)
+|++++|.++.++. + ...++|+.|++++|........ +..+++|++|++++|.++.+......++|+.|+++
T Consensus 114 ~L~l~~n~i~~~~~-~------~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 114 ELYLNEDNISDISP-L------ANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLN 185 (347)
T ss_dssp EEECTTSCCCCCGG-G------TTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECT
T ss_pred EEECcCCcccCchh-h------ccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEcc
Confidence 99999999999875 2 2337999999999955543333 67999999999999999998876677899999999
Q ss_pred CCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceE
Q psy6452 391 HNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470 (594)
Q Consensus 391 ~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 470 (594)
+|.+..++. +..+++|+.|++++|. +.+ ++ .+..+++|+.|++++|.++...+ +..+++|+.|
T Consensus 186 ~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~-~~----------~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 248 (347)
T 4fmz_A 186 YNQIEDISP---LASLTSLHYFTAYVNQ-ITD-IT----------PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 248 (347)
T ss_dssp TSCCCCCGG---GGGCTTCCEEECCSSC-CCC-CG----------GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred CCccccccc---ccCCCccceeecccCC-CCC-Cc----------hhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEE
Confidence 999998887 4789999999999975 222 21 14567899999999999988765 8899999999
Q ss_pred eCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCccc-CccccCCCCCCE
Q psy6452 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKL-PESFANLKSLKI 549 (594)
Q Consensus 471 ~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~ 549 (594)
++++| .+..+ ..+..+++|++|++++|.++.++ .+..+++|++|++++|+++.+ +..+..+++|++
T Consensus 249 ~l~~n-----------~l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 249 EIGTN-----------QISDI-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp ECCSS-----------CCCCC-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred ECCCC-----------ccCCC-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 99996 33344 35788999999999999999985 588999999999999999966 457899999999
Q ss_pred EECcCCCCCccCcccccCCCCcEEEccCCCCcc
Q psy6452 550 LDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMF 582 (594)
Q Consensus 550 L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ 582 (594)
|++++|+++.++. +..+++|++|++++|+|+.
T Consensus 316 L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 316 LFLSQNHITDIRP-LASLSKMDSADFANQVIKK 347 (347)
T ss_dssp EECCSSSCCCCGG-GGGCTTCSEESSSCC----
T ss_pred EEccCCccccccC-hhhhhccceeehhhhcccC
Confidence 9999999998866 8899999999999999873
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-33 Score=312.17 Aligned_cols=306 Identities=20% Similarity=0.264 Sum_probs=227.7
Q ss_pred hhccCccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccc
Q psy6452 147 VKTEALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELID 223 (594)
Q Consensus 147 ~~~~~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~ 223 (594)
+...+++.+++.+|.++.+|..+ +++|++|+|++|.++++++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~----------------------------------- 92 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT----------------------------------- 92 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECT-----------------------------------
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCCh-----------------------------------
Confidence 33456678888888888888766 6678888888888887651
Q ss_pred cccccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--
Q psy6452 224 TELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP-- 301 (594)
Q Consensus 224 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-- 301 (594)
..|..+++|++|+|++|.|+.+++..|.++++|++|+|++|.+++ +|+.+|+.+++|++|+|++|.++.++
T Consensus 93 ----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 165 (597)
T 3oja_B 93 ----YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS---LPRGIFHNTPKLTTLSMSNNNLERIEDD 165 (597)
T ss_dssp ----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred ----HHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC---CCHHHhccCCCCCEEEeeCCcCCCCChh
Confidence 233456788888888888888888888888888888888888554 66777778888888888888888665
Q ss_pred CcCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCcccc
Q psy6452 302 DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCT 381 (594)
Q Consensus 302 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 381 (594)
.|..+++|++|++++|.+++++... .++|+.|++++|.++.++ ..++|+.|++++|.++.++... .
T Consensus 166 ~~~~l~~L~~L~L~~N~l~~~~~~~--------l~~L~~L~l~~n~l~~l~-----~~~~L~~L~ls~n~l~~~~~~~-~ 231 (597)
T 3oja_B 166 TFQATTSLQNLQLSSNRLTHVDLSL--------IPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPV-N 231 (597)
T ss_dssp TTTTCTTCCEEECTTSCCSBCCGGG--------CTTCSEEECCSSCCSEEE-----CCTTCSEEECCSSCCCEEECSC-C
T ss_pred hhhcCCcCcEEECcCCCCCCcChhh--------hhhhhhhhcccCcccccc-----CCchhheeeccCCccccccccc-C
Confidence 3778888888888888888765321 256777777777666543 3346677777777766554322 2
Q ss_pred CCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCcccc
Q psy6452 382 HTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL 461 (594)
Q Consensus 382 ~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 461 (594)
++|+.|++++|.+... ..+..+++|+.|++++|.+++..+..|
T Consensus 232 ~~L~~L~L~~n~l~~~-------------------------------------~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 232 VELTILKLQHNNLTDT-------------------------------------AWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SCCCEEECCSSCCCCC-------------------------------------GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred CCCCEEECCCCCCCCC-------------------------------------hhhccCCCCCEEECCCCccCCCCHHHh
Confidence 3455555555444332 122345577777777777888778888
Q ss_pred ccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccc
Q psy6452 462 KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESF 541 (594)
Q Consensus 462 ~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~ 541 (594)
..+++|+.|++++| .+..+|..+..+++|+.|+|++|.++.+|..+..+++|++|+|++|.|+.++ +
T Consensus 275 ~~l~~L~~L~Ls~N-----------~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~ 341 (597)
T 3oja_B 275 VKMQRLERLYISNN-----------RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--L 341 (597)
T ss_dssp TTCSSCCEEECTTS-----------CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--C
T ss_pred cCccCCCEEECCCC-----------CCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--h
Confidence 88999999999985 4455677777788999999999999999988888999999999999999885 6
Q ss_pred cCCCCCCEEECcCCCCC
Q psy6452 542 ANLKSLKILDVSYNKLT 558 (594)
Q Consensus 542 ~~l~~L~~L~Ls~N~l~ 558 (594)
..+++|+.|+|++|+++
T Consensus 342 ~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 342 STHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CTTCCCSEEECCSSCEE
T ss_pred hhcCCCCEEEeeCCCCC
Confidence 77889999999999988
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.2e-33 Score=301.43 Aligned_cols=308 Identities=16% Similarity=0.172 Sum_probs=171.5
Q ss_pred hhhhccCccEEecCCCCCcccChhh-hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccc
Q psy6452 145 NTVKTEALSTRTFCDHELQSIEDDI-LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELID 223 (594)
Q Consensus 145 ~~~~~~~L~~l~l~~n~l~~ip~~~-l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~ 223 (594)
...+..+|+.+++++|.++.+|... +++|++|+|++|++++++ +..++.++. ++++.|.+.
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~--------------L~Ls~N~l~ 98 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD----LSQNTNLTY--------------LACDSNKLT 98 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC----CTTCTTCSE--------------EECCSSCCS
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc----cccCCCCCE--------------EECcCCCCc
Confidence 3344567889999999999987433 889999999999998863 222222221 122222222
Q ss_pred cccccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCC-CCCCCCC
Q psy6452 224 TELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN-KLSELPD 302 (594)
Q Consensus 224 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~ 302 (594)
+. .+.++++|++|++++|+++.++ +..+++|++|++++|+++++ + ++.+++|++|++++| .+..+ .
T Consensus 99 ~~---~~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l---~---l~~l~~L~~L~l~~n~~~~~~-~ 165 (457)
T 3bz5_A 99 NL---DVTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEI---D---VSHNTQLTELDCHLNKKITKL-D 165 (457)
T ss_dssp CC---CCTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCC---C---CTTCTTCCEEECTTCSCCCCC-C
T ss_pred ee---ecCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCcccee---c---cccCCcCCEEECCCCCccccc-c
Confidence 21 1344555555555555555543 44555555555555554442 1 244555555555555 23333 3
Q ss_pred cCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccC
Q psy6452 303 FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTH 382 (594)
Q Consensus 303 ~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 382 (594)
+..+++|++|++++|+++++| + ...++|+.|++++|.++.++ +..+++|++|++++|++++++ ....+
T Consensus 166 ~~~l~~L~~L~ls~n~l~~l~--l------~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~ip-~~~l~ 233 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITELD--V------SQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID-VTPLT 233 (457)
T ss_dssp CTTCTTCCEEECCSSCCCCCC--C------TTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC-CTTCT
T ss_pred cccCCcCCEEECCCCccceec--c------ccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccccC-ccccC
Confidence 455555555555555555544 1 11135555555555555542 345555555555555555544 22334
Q ss_pred CccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccc
Q psy6452 383 TLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK 462 (594)
Q Consensus 383 ~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 462 (594)
+|+.|++++|.+..+|. ..+++|+.|++++| +|+.|++++|.+.+..+ +.
T Consensus 234 ~L~~L~l~~N~l~~~~~----~~l~~L~~L~l~~n------------------------~L~~L~l~~n~~~~~~~--~~ 283 (457)
T 3bz5_A 234 QLTYFDCSVNPLTELDV----STLSKLTTLHCIQT------------------------DLLEIDLTHNTQLIYFQ--AE 283 (457)
T ss_dssp TCSEEECCSSCCSCCCC----TTCTTCCEEECTTC------------------------CCSCCCCTTCTTCCEEE--CT
T ss_pred CCCEEEeeCCcCCCcCH----HHCCCCCEEeccCC------------------------CCCEEECCCCccCCccc--cc
Confidence 55555555555555442 23445555555443 55666666666555544 45
Q ss_pred cCCCcceEeCCCCcCcccccccccccccCcc--------cccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCC
Q psy6452 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPL--------SILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKV 534 (594)
Q Consensus 463 ~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~--------~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l 534 (594)
.+++|+.|++++|. ..+.+|. .+.++++|++|++++|+|+.++ +..+++|+.|++++|+|
T Consensus 284 ~l~~L~~L~Ls~n~----------~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 284 GCRKIKELDVTHNT----------QLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp TCTTCCCCCCTTCT----------TCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCC
T ss_pred ccccCCEEECCCCc----------ccceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCC
Confidence 67778888887772 3333332 1344566667777777666653 66666777777777766
Q ss_pred ccc
Q psy6452 535 YKL 537 (594)
Q Consensus 535 ~~l 537 (594)
+.+
T Consensus 352 ~~l 354 (457)
T 3bz5_A 352 QDF 354 (457)
T ss_dssp CBC
T ss_pred CCc
Confidence 654
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2e-32 Score=283.58 Aligned_cols=281 Identities=22% Similarity=0.247 Sum_probs=195.8
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEE
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKEL 312 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L 312 (594)
+++|++|++++|+++.+++ |..+++|++|++++|.++++ + .+..+++|++|++++|.++.++.+..+++|++|
T Consensus 65 ~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~---~--~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L 137 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI---S--ALQNLTNLRELYLNEDNISDISPLANLTKMYSL 137 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---G--GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEE
T ss_pred cCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc---h--HHcCCCcCCEEECcCCcccCchhhccCCceeEE
Confidence 4666777777777766665 56667777777777765543 2 245667777777777777666666666777777
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCC
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN 392 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N 392 (594)
++++|........+ ...++|++|++++|.+..++. +..+++|+.|++++|.+++++.....++|+.+++++|
T Consensus 138 ~l~~n~~~~~~~~~------~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 209 (347)
T 4fmz_A 138 NLGANHNLSDLSPL------SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVN 209 (347)
T ss_dssp ECTTCTTCCCCGGG------TTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSS
T ss_pred ECCCCCCcccccch------hhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccC
Confidence 77776433322122 222466777777777666655 4566777777777777776665555566777777777
Q ss_pred CCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeC
Q psy6452 393 IGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472 (594)
Q Consensus 393 ~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 472 (594)
.+..++. +..+++|+.|++++|. ...++. +..+++|+.|++++|.++.. ..+..+++|++|++
T Consensus 210 ~l~~~~~---~~~~~~L~~L~l~~n~--l~~~~~----------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l 272 (347)
T 4fmz_A 210 QITDITP---VANMTRLNSLKIGNNK--ITDLSP----------LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNV 272 (347)
T ss_dssp CCCCCGG---GGGCTTCCEEECCSSC--CCCCGG----------GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred CCCCCch---hhcCCcCCEEEccCCc--cCCCcc----------hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEc
Confidence 6666655 3567777777777764 112221 34567888888888888765 56888999999999
Q ss_pred CCCcCcccccccccccccCcccccCCCCCcEEeCccccCccc-cccccCCCCCcEEEccCCCCcccCccccCCCCCCEEE
Q psy6452 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILD 551 (594)
Q Consensus 473 s~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 551 (594)
++| .+..+| .+..+++|+.|++++|.++.+ |..+..+++|++|+|++|+++.++. +..+++|++|+
T Consensus 273 ~~n-----------~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 339 (347)
T 4fmz_A 273 GSN-----------QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSAD 339 (347)
T ss_dssp CSS-----------CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEES
T ss_pred cCC-----------ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceee
Confidence 996 334443 577889999999999999955 4558999999999999999998876 88899999999
Q ss_pred CcCCCCC
Q psy6452 552 VSYNKLT 558 (594)
Q Consensus 552 Ls~N~l~ 558 (594)
+++|+|+
T Consensus 340 l~~N~i~ 346 (347)
T 4fmz_A 340 FANQVIK 346 (347)
T ss_dssp SSCC---
T ss_pred hhhhccc
Confidence 9999986
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=298.23 Aligned_cols=314 Identities=20% Similarity=0.236 Sum_probs=247.8
Q ss_pred cEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccEEec
Q psy6452 237 FTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKELDI 314 (594)
Q Consensus 237 ~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~L~L 314 (594)
+.+++++++++.+|... .+++++|+|++|++++ +++..|..+++|++|+|++|.++.++ .|.++++|++|+|
T Consensus 14 ~~v~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI---PTETRLLDLGKNRIKT---LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp TEEECCSCCCSSCCSCC---CTTCSEEECCSSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCcCCCCC---CCCCcEEECCCCccce---ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEEC
Confidence 56777778888777643 2577888888888544 55566777888888888888877653 4777888888888
Q ss_pred cCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc--cCCccEEeCCCC
Q psy6452 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC--THTLQTFSMNHN 392 (594)
Q Consensus 315 s~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~~~L~~L~L~~N 392 (594)
++|.++.+|...+.. .++|++|+|++|.++.+++..|.++++|+.|++++|.++.+.+..+ .++|+.|++++|
T Consensus 88 ~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 88 RSNRLKLIPLGVFTG-----LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp CSSCCCSCCTTSSTT-----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred CCCcCCccCcccccC-----CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 888888777654322 2578888888888887777777788888888888888877765443 357888888888
Q ss_pred CCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeC
Q psy6452 393 IGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472 (594)
Q Consensus 393 ~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 472 (594)
.+..++... +..+++|+.|++++|. +.+ ++ ...+..+++|+.|++++|...+..+..+....+|+.|++
T Consensus 163 ~l~~~~~~~-l~~l~~L~~L~l~~n~-i~~-~~--------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 163 NLTSIPTEA-LSHLHGLIVLRLRHLN-INA-IR--------DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp CCSSCCHHH-HTTCTTCCEEEEESCC-CCE-EC--------TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred cCcccChhH-hcccCCCcEEeCCCCc-CcE-eC--------hhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence 888887765 5789999999999975 221 22 224566789999999999887777766666679999999
Q ss_pred CCCcCcccccccccccccCc-ccccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCccc-CccccCCCCCCE
Q psy6452 473 SNDIDHRKSQDFVNVLWELP-LSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKL-PESFANLKSLKI 549 (594)
Q Consensus 473 s~n~~~~~~~~~~n~~~~ip-~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~ 549 (594)
++| .+..+| ..+..+++|+.|+|++|.|+.++.. |..+++|+.|+|++|+++.+ |..|..+++|++
T Consensus 232 ~~n-----------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 300 (477)
T 2id5_A 232 THC-----------NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300 (477)
T ss_dssp ESS-----------CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCE
T ss_pred cCC-----------cccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCE
Confidence 995 455666 4678899999999999999988664 89999999999999999987 568999999999
Q ss_pred EECcCCCCCccCcc-cccCCCCcEEEccCCCCccc
Q psy6452 550 LDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 550 L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l 583 (594)
|+|++|+|+.+|.. |..+++|++|+|++|+|+.-
T Consensus 301 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 301 LNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp EECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred EECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 99999999998776 88999999999999999853
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.4e-32 Score=289.56 Aligned_cols=337 Identities=18% Similarity=0.168 Sum_probs=247.0
Q ss_pred ChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCCCcccEEEccCCC
Q psy6452 166 EDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQD 245 (594)
Q Consensus 166 p~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~ 245 (594)
+...+++|++|++++|.+++++ . +..+++|++|+|++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~---------~--------------------------------l~~l~~L~~L~Ls~n~ 75 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT---------G--------------------------------IEKLTGLTKLICTSNN 75 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT---------T--------------------------------GGGCTTCSEEECCSSC
T ss_pred ChhHcCCCCEEEccCCCcccCh---------h--------------------------------hcccCCCCEEEccCCc
Confidence 3333899999999999999764 1 1346788888888888
Q ss_pred CcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEeccCCccccCchh
Q psy6452 246 INFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLC 325 (594)
Q Consensus 246 l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~ 325 (594)
|+.++ +..+++|++|++++|.++++ + ++.+++|++|++++|+++.++ +..+++|++|++++|++++++
T Consensus 76 l~~~~---~~~l~~L~~L~Ls~N~l~~~---~---~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~-- 143 (457)
T 3bz5_A 76 ITTLD---LSQNTNLTYLACDSNKLTNL---D---VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID-- 143 (457)
T ss_dssp CSCCC---CTTCTTCSEEECCSSCCSCC---C---CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--
T ss_pred CCeEc---cccCCCCCEEECcCCCCcee---e---cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceec--
Confidence 88875 67888888888888887764 2 567888888888888888875 788888888888888888875
Q ss_pred hhhccccccCCCcceEEcCCC-CCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhc
Q psy6452 326 LQVHFYVHIPYKHSQSDISHN-NFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQ 404 (594)
Q Consensus 326 ~~~~~~~~~~~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~ 404 (594)
+ ...++|++|++++| .+..++ +..+++|++|++++|++++++ ....++|+.|++++|.+..++ +.
T Consensus 144 l------~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~----l~ 209 (457)
T 3bz5_A 144 V------SHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD----LN 209 (457)
T ss_dssp C------TTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCCC----CT
T ss_pred c------ccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCeec----cc
Confidence 1 22367888888888 455552 457888888888888888876 444568888888888887774 36
Q ss_pred ccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCccccccc
Q psy6452 405 EFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDF 484 (594)
Q Consensus 405 ~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~ 484 (594)
.+++|+.|++++|+ +.+ +| +..+++|+.|++++|.+++..+.. +++|+.|++++|.+....-..
T Consensus 210 ~l~~L~~L~Ls~N~-l~~-ip-----------~~~l~~L~~L~l~~N~l~~~~~~~---l~~L~~L~l~~n~L~~L~l~~ 273 (457)
T 3bz5_A 210 QNIQLTFLDCSSNK-LTE-ID-----------VTPLTQLTYFDCSVNPLTELDVST---LSKLTTLHCIQTDLLEIDLTH 273 (457)
T ss_dssp TCTTCSEEECCSSC-CSC-CC-----------CTTCTTCSEEECCSSCCSCCCCTT---CTTCCEEECTTCCCSCCCCTT
T ss_pred cCCCCCEEECcCCc-ccc-cC-----------ccccCCCCEEEeeCCcCCCcCHHH---CCCCCEEeccCCCCCEEECCC
Confidence 78888888888875 222 33 345678888888888888875444 444444444443332221111
Q ss_pred ccccccCcccccCCCCCcEEeCccccCc-cccc--------cccCCCCCcEEEccCCCCcccCccccCCCCCCEEECcCC
Q psy6452 485 VNVLWELPLSILYLSSIQELHLSNVQLN-CIPE--------DIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYN 555 (594)
Q Consensus 485 ~n~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~--------~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N 555 (594)
-...+.+| +..+++|+.|++++|... .+|. .+.++++|++|+|++|+|+.++ +..+++|+.|++++|
T Consensus 274 n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 274 NTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp CTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSS
T ss_pred CccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCC
Confidence 14566666 467899999999999643 4432 2677889999999999999984 889999999999999
Q ss_pred CCCccCcc--c----------ccCCCCcEEEccCCCCc-ccCHhHHh
Q psy6452 556 KLTMLPDG--F----------VMLSNLTTFYAQRKYWM-FLTISLLC 589 (594)
Q Consensus 556 ~l~~ip~~--l----------~~l~~L~~L~L~~N~l~-~l~~~~~~ 589 (594)
+|+.++.- + ..+..|+.+++++|.++ .||.+++.
T Consensus 350 ~l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 350 HIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp CCCBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred CCCCccccccccccCCcEEecceeeecCccccccCcEEEEcChhHhc
Confidence 99976421 1 12356788899999988 56766543
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.5e-31 Score=275.10 Aligned_cols=290 Identities=18% Similarity=0.253 Sum_probs=230.2
Q ss_pred ccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCC-C-CcCCCc
Q psy6452 230 NKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSEL-P-DFLNFK 307 (594)
Q Consensus 230 ~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p-~~~~l~ 307 (594)
+....+++.++++++.++.+|... .++|++|++++|++++ +++..|..+++|++|+|++|.++.+ | .|..++
T Consensus 27 ~~c~c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (330)
T 1xku_A 27 FRCQCHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITE---IKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100 (330)
T ss_dssp TTCEEETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCC---BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred CCCcCCCeEEEecCCCccccCccC---CCCCeEEECCCCcCCE---eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC
Confidence 344568999999999999998754 3789999999999665 6677788999999999999999987 4 588999
Q ss_pred CccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCC--CCccccCCcc
Q psy6452 308 VLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL--HKPRCTHTLQ 385 (594)
Q Consensus 308 ~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~~~L~ 385 (594)
+|++|++++|.++.+|..+. ++|++|++++|.++.++...|.++++|+.|++++|.++.. ....
T Consensus 101 ~L~~L~Ls~n~l~~l~~~~~--------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------ 166 (330)
T 1xku_A 101 KLERLYLSKNQLKELPEKMP--------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA------ 166 (330)
T ss_dssp TCCEEECCSSCCSBCCSSCC--------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG------
T ss_pred CCCEEECCCCcCCccChhhc--------ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh------
Confidence 99999999999999886542 6899999999999999999999999999999999998752 2211
Q ss_pred EEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCC
Q psy6452 386 TFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLK 465 (594)
Q Consensus 386 ~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 465 (594)
+..+++|+.|++++|. ...+|.. .+++|+.|++++|.+++..+..+..++
T Consensus 167 -----------------~~~l~~L~~L~l~~n~--l~~l~~~-----------~~~~L~~L~l~~n~l~~~~~~~~~~l~ 216 (330)
T 1xku_A 167 -----------------FQGMKKLSYIRIADTN--ITTIPQG-----------LPPSLTELHLDGNKITKVDAASLKGLN 216 (330)
T ss_dssp -----------------GGGCTTCCEEECCSSC--CCSCCSS-----------CCTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred -----------------ccCCCCcCEEECCCCc--cccCCcc-----------ccccCCEEECCCCcCCccCHHHhcCCC
Confidence 2345555555555543 1222221 124788888888888888888899999
Q ss_pred CcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCc-cccC-
Q psy6452 466 NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPE-SFAN- 543 (594)
Q Consensus 466 ~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~- 543 (594)
+|+.|++++| ...+..+..+..+++|++|+|++|.|+.+|..+..+++|++|+|++|+|+.++. .|..
T Consensus 217 ~L~~L~Ls~n----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~ 286 (330)
T 1xku_A 217 NLAKLGLSFN----------SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286 (330)
T ss_dssp TCCEEECCSS----------CCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred CCCEEECCCC----------cCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCc
Confidence 9999999986 333333447788899999999999999999999999999999999999998865 5543
Q ss_pred -----CCCCCEEECcCCCCCc--c-CcccccCCCCcEEEccCCC
Q psy6452 544 -----LKSLKILDVSYNKLTM--L-PDGFVMLSNLTTFYAQRKY 579 (594)
Q Consensus 544 -----l~~L~~L~Ls~N~l~~--i-p~~l~~l~~L~~L~L~~N~ 579 (594)
...|+.|++++|.+.. + |..|..+.+++.++|++|+
T Consensus 287 ~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3789999999999983 4 4558899999999999985
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=7.8e-32 Score=277.56 Aligned_cols=285 Identities=18% Similarity=0.247 Sum_probs=229.5
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCcc
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLK 310 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~ 310 (594)
..+++.++++++.++.+|... .++|++|++++|.+++ +++..|..+++|++|++++|.++.++ .|.++++|+
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISE---LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred cccCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCc---cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 457999999999999999755 3789999999999654 66777899999999999999999773 588999999
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCC--CCCccccC-CccEE
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI--LHKPRCTH-TLQTF 387 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~~-~L~~L 387 (594)
+|++++|.++.+|..++ .+|++|++++|.++.++...|.++++|+.|++++|.++. +.+..+.. +|+.|
T Consensus 106 ~L~L~~n~l~~l~~~~~--------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L 177 (332)
T 2ft3_A 106 KLYISKNHLVEIPPNLP--------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL 177 (332)
T ss_dssp EEECCSSCCCSCCSSCC--------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCC
T ss_pred EEECCCCcCCccCcccc--------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEE
Confidence 99999999999986543 689999999999999999999999999999999999974 33222221 56666
Q ss_pred eCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCc
Q psy6452 388 SMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNI 467 (594)
Q Consensus 388 ~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 467 (594)
++++|.+..+|..+ +++|+.|++++|.+++..+..+..+++|
T Consensus 178 ~l~~n~l~~l~~~~--------------------------------------~~~L~~L~l~~n~i~~~~~~~l~~l~~L 219 (332)
T 2ft3_A 178 RISEAKLTGIPKDL--------------------------------------PETLNELHLDHNKIQAIELEDLLRYSKL 219 (332)
T ss_dssp BCCSSBCSSCCSSS--------------------------------------CSSCSCCBCCSSCCCCCCTTSSTTCTTC
T ss_pred ECcCCCCCccCccc--------------------------------------cCCCCEEECCCCcCCccCHHHhcCCCCC
Confidence 66666665555432 1366777777777877777888889999
Q ss_pred ceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCc-cccC---
Q psy6452 468 KYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPE-SFAN--- 543 (594)
Q Consensus 468 ~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~--- 543 (594)
+.|++++| ...+..|..+..+++|++|+|++|+|+.+|..+..+++|++|++++|+|+.++. .|..
T Consensus 220 ~~L~L~~N----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 289 (332)
T 2ft3_A 220 YRLGLGHN----------QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF 289 (332)
T ss_dssp SCCBCCSS----------CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred CEEECCCC----------cCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcccccc
Confidence 99999986 333333446788899999999999999999999999999999999999998865 5543
Q ss_pred ---CCCCCEEECcCCCCC--cc-CcccccCCCCcEEEccCCC
Q psy6452 544 ---LKSLKILDVSYNKLT--ML-PDGFVMLSNLTTFYAQRKY 579 (594)
Q Consensus 544 ---l~~L~~L~Ls~N~l~--~i-p~~l~~l~~L~~L~L~~N~ 579 (594)
..+|+.|++++|.+. .+ |..|..+++|+.+++++|+
T Consensus 290 ~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 467999999999998 45 4458899999999999885
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=7.2e-30 Score=262.86 Aligned_cols=265 Identities=21% Similarity=0.232 Sum_probs=164.9
Q ss_pred cccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEec
Q psy6452 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314 (594)
Q Consensus 235 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~L 314 (594)
+|++|++++|+|+.+++..|.++++|++|++++|++++ +++..|+.+++|++|++++|.++.+|.-.. ++|++|++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l 130 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK---IHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRI 130 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE---ECGGGSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEEC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc---cCHhHhhCcCCCCEEECCCCcCCccCcccc-ccCCEEEC
Confidence 45555555555555555445555555555555555332 333444555555555555555555542111 45555555
Q ss_pred cCCccccCchhhhhccccccCCCcceEEcCCCCCCC--CChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCC
Q psy6452 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFES--MPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN 392 (594)
Q Consensus 315 s~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N 392 (594)
++|.++.+|...+. ..++|+.|++++|.++. +....|..+ +|++|++++|+++.++... .++|+.|++++|
T Consensus 131 ~~n~i~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n 203 (332)
T 2ft3_A 131 HDNRIRKVPKGVFS-----GLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL-PETLNELHLDHN 203 (332)
T ss_dssp CSSCCCCCCSGGGS-----SCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS-CSSCSCCBCCSS
T ss_pred CCCccCccCHhHhC-----CCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccc-cCCCCEEECCCC
Confidence 55555555443221 11455555555555542 444444445 6666777777766655432 256777777777
Q ss_pred CCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeC
Q psy6452 393 IGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472 (594)
Q Consensus 393 ~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 472 (594)
.+..++... +..+ ++|+.|++++|.+++..+..+..+++|+.|++
T Consensus 204 ~i~~~~~~~-l~~l----------------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 248 (332)
T 2ft3_A 204 KIQAIELED-LLRY----------------------------------SKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248 (332)
T ss_dssp CCCCCCTTS-STTC----------------------------------TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred cCCccCHHH-hcCC----------------------------------CCCCEEECCCCcCCcCChhHhhCCCCCCEEEC
Confidence 665555322 1233 35555566666666666677888899999999
Q ss_pred CCCcCcccccccccccccCcccccCCCCCcEEeCccccCcccccc-ccC------CCCCcEEEccCCCCc--cc-Ccccc
Q psy6452 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED-IGN------LICLEKLNISHNKVY--KL-PESFA 542 (594)
Q Consensus 473 s~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~------l~~L~~L~Ls~N~l~--~l-p~~~~ 542 (594)
++| .+..+|..+..+++|++|++++|+|+.++.. |.. ..+|+.|++++|.+. .+ |.+|.
T Consensus 249 ~~N-----------~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 249 DNN-----------KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp CSS-----------CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred CCC-----------cCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 985 5568888899999999999999999988654 543 478999999999998 55 45899
Q ss_pred CCCCCCEEECcCCC
Q psy6452 543 NLKSLKILDVSYNK 556 (594)
Q Consensus 543 ~l~~L~~L~Ls~N~ 556 (594)
.+++|+.|++++|+
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 99999999999984
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.9e-29 Score=259.46 Aligned_cols=267 Identities=19% Similarity=0.208 Sum_probs=177.3
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEe
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELD 313 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~ 313 (594)
++++.|+|++|+|+.+++..|.++++|++|+|++|.+++ +.+..|..+++|++|++++|.++.+|.-. .++|++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK---ISPGAFAPLVKLERLYLSKNQLKELPEKM-PKTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC---BCTTTTTTCTTCCEEECCSSCCSBCCSSC-CTTCCEEE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe---eCHHHhcCCCCCCEEECCCCcCCccChhh-cccccEEE
Confidence 345566666666666665556666666666666666443 33444556666666666666666555311 15666666
Q ss_pred ccCCccccCchhhhhccccccCCCcceEEcCCCCCCC--CChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCC
Q psy6452 314 ISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFES--MPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNH 391 (594)
Q Consensus 314 Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~ 391 (594)
+++|.++.++...+.. .++|+.|++++|.++. +....|.++++|++|++++|.++.++.... ++|++|++++
T Consensus 128 l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~-~~L~~L~l~~ 201 (330)
T 1xku_A 128 VHENEITKVRKSVFNG-----LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP-PSLTELHLDG 201 (330)
T ss_dssp CCSSCCCBBCHHHHTT-----CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC-TTCSEEECTT
T ss_pred CCCCcccccCHhHhcC-----CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc-ccCCEEECCC
Confidence 6666666655443221 2466666666666653 445566678888888888888877654332 5666666666
Q ss_pred CCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEe
Q psy6452 392 NIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN 471 (594)
Q Consensus 392 N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 471 (594)
|.+..++... +.. +++|+.|++++|.+++..+..+..+++|++|+
T Consensus 202 n~l~~~~~~~-~~~----------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 246 (330)
T 1xku_A 202 NKITKVDAAS-LKG----------------------------------LNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246 (330)
T ss_dssp SCCCEECTGG-GTT----------------------------------CTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred CcCCccCHHH-hcC----------------------------------CCCCCEEECCCCcCceeChhhccCCCCCCEEE
Confidence 6555443222 123 34566666666677777777788899999999
Q ss_pred CCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcccccc-ccC------CCCCcEEEccCCCCcc--c-Cccc
Q psy6452 472 CSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED-IGN------LICLEKLNISHNKVYK--L-PESF 541 (594)
Q Consensus 472 Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~------l~~L~~L~Ls~N~l~~--l-p~~~ 541 (594)
+++| .+..+|..+..+++|++|++++|.|+.++.. |.. ...|+.|++++|.+.. + |..|
T Consensus 247 L~~N-----------~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f 315 (330)
T 1xku_A 247 LNNN-----------KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315 (330)
T ss_dssp CCSS-----------CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred CCCC-----------cCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence 9995 5668888899999999999999999988764 432 4789999999999983 4 4589
Q ss_pred cCCCCCCEEECcCCC
Q psy6452 542 ANLKSLKILDVSYNK 556 (594)
Q Consensus 542 ~~l~~L~~L~Ls~N~ 556 (594)
..+.+++.++|++|+
T Consensus 316 ~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 316 RCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCCCGGGEEC----
T ss_pred ccccceeEEEecccC
Confidence 999999999999985
No 45
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.97 E-value=1.4e-29 Score=280.25 Aligned_cols=264 Identities=22% Similarity=0.259 Sum_probs=172.6
Q ss_pred CccEEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCc
Q psy6452 151 ALSTRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCN 230 (594)
Q Consensus 151 ~L~~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~ 230 (594)
+++.+++++|.++.||..+.++|++|+|++|+|+.++.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~------------------------------------------ 78 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA------------------------------------------ 78 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC------------------------------------------
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC------------------------------------------
Confidence 35678888888888887777788888888888876651
Q ss_pred cCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCcc
Q psy6452 231 KQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLK 310 (594)
Q Consensus 231 ~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~ 310 (594)
.+++|++|+|++|+|+.++. .+++|++|++++|.++++ +. .+++|+.|++++|+++.+|.. +++|+
T Consensus 79 -~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l---~~----~l~~L~~L~L~~N~l~~lp~~--l~~L~ 144 (622)
T 3g06_A 79 -LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHL---PA----LPSGLCKLWIFGNQLTSLPVL--PPGLQ 144 (622)
T ss_dssp -CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCC---CC----CCTTCCEEECCSSCCSCCCCC--CTTCC
T ss_pred -cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCC---CC----CCCCcCEEECCCCCCCcCCCC--CCCCC
Confidence 14678888888888887776 567888888888886653 32 457788888888888877753 47788
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCC
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMN 390 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~ 390 (594)
+|++++|.++++|. .+.+|+.|++++|.++.++ ..+++|+.|++++|.|++++. ..++|+.|+++
T Consensus 145 ~L~Ls~N~l~~l~~---------~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~ 209 (622)
T 3g06_A 145 ELSVSDNQLASLPA---------LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT--LPSELYKLWAY 209 (622)
T ss_dssp EEECCSSCCSCCCC---------CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECC
T ss_pred EEECcCCcCCCcCC---------ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC--ccchhhEEECc
Confidence 88888888777663 2256777777777777766 245667777777777665442 12334444444
Q ss_pred CCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceE
Q psy6452 391 HNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470 (594)
Q Consensus 391 ~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 470 (594)
+|.+..+|. .+++|+.|
T Consensus 210 ~N~l~~l~~---------------------------------------------------------------~~~~L~~L 226 (622)
T 3g06_A 210 NNRLTSLPA---------------------------------------------------------------LPSGLKEL 226 (622)
T ss_dssp SSCCSSCCC---------------------------------------------------------------CCTTCCEE
T ss_pred CCcccccCC---------------------------------------------------------------CCCCCCEE
Confidence 433333221 01333444
Q ss_pred eCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEE
Q psy6452 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKIL 550 (594)
Q Consensus 471 ~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 550 (594)
++++| .+..+| ..+++|+.|+|++|+|+.+|. .+++|+.|+|++|+|+.+|..+..+++|+.|
T Consensus 227 ~Ls~N-----------~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 227 IVSGN-----------RLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTV 289 (622)
T ss_dssp ECCSS-----------CCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEE
T ss_pred EccCC-----------ccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEE
Confidence 44442 222233 224567777777777777766 5577777777777777777777777777777
Q ss_pred ECcCCCCCc-cCcccc
Q psy6452 551 DVSYNKLTM-LPDGFV 565 (594)
Q Consensus 551 ~Ls~N~l~~-ip~~l~ 565 (594)
+|++|+|+. +|..+.
T Consensus 290 ~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 290 NLEGNPLSERTLQALR 305 (622)
T ss_dssp ECCSCCCCHHHHHHHH
T ss_pred EecCCCCCCcCHHHHH
Confidence 777777773 344343
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5.8e-32 Score=290.93 Aligned_cols=341 Identities=15% Similarity=0.081 Sum_probs=201.7
Q ss_pred CCCcccEEEccCCCCcccc----hHhhhcCCCCCEEECCCCCCCCccccchhhhhcCC----CCCEEEcCCCCCCC----
Q psy6452 232 QYHDIFTVNLSHQDINFVQ----ESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLT----NLIVLDLSHNKLSE---- 299 (594)
Q Consensus 232 ~l~~L~~L~Ls~n~l~~l~----~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~----~L~~L~Ls~N~l~~---- 299 (594)
.+++|++|+|++|+++... +..+..+++|++|+|++|.+++. .+..++..++ +|++|+|++|.++.
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~--~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV--GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH--HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChH--HHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 3567778888888777432 33456677788888888775431 1223334454 68888888887773
Q ss_pred -CC-CcCCCcCccEEeccCCccccCc-hhhhhccccccCCCcceEEcCCCCCCCCC----hhhhccCCCCcEEECCCCCC
Q psy6452 300 -LP-DFLNFKVLKELDISHNNFESMP-LCLQVHFYVHIPYKHSQSDISHNNFESMP----LCLQVHFCKLVKLDISHNQI 372 (594)
Q Consensus 300 -lp-~~~~l~~L~~L~Ls~N~l~~lp-~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~----~~~~~~l~~L~~L~Ls~N~l 372 (594)
++ .+..+++|++|++++|.++... ..+.... .....+|++|++++|.++... ...+..+++|++|++++|.+
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL-LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH-TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHH-hcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 23 3667777888888888776422 1111111 111246778888888777543 33345567788888888777
Q ss_pred CCCCCccc-------cCCccEEeCCCCCCCCC-----CchhhhcccCcccEEECcCCCCccCCccHHHhhhccccccccc
Q psy6452 373 KILHKPRC-------THTLQTFSMNHNIGMKI-----PEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVF 440 (594)
Q Consensus 373 ~~l~~~~~-------~~~L~~L~L~~N~~~~i-----p~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~ 440 (594)
+......+ .++|++|++++|.+... +.. +..+++|+.|++++|. +.+.-...+.. .....+
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~--l~~~~~L~~L~Ls~n~-l~~~~~~~l~~----~~~~~~ 255 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI--VASKASLRELALGSNK-LGDVGMAELCP----GLLHPS 255 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH--HHHCTTCCEEECCSSB-CHHHHHHHHHH----HHTSTT
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH--HHhCCCccEEeccCCc-CChHHHHHHHH----HHhcCC
Confidence 65332222 23777888887766653 332 2567778888887763 21111000000 011235
Q ss_pred CCCcEEEcCCcccccc----CccccccCCCcceEeCCCCcCcccccccccccccCccccc-CCCCCcEEeCccccCcc--
Q psy6452 441 SNLISLHMQNTAAVMS----NVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNC-- 513 (594)
Q Consensus 441 ~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~-~l~~L~~L~Ls~N~l~~-- 513 (594)
++|++|++++|.++.. .+..+..+++|++|++++|.+..... ..+...+. ..++|++|+|++|.++.
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~------~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA------RLLCETLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH------HHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH------HHHHHHhccCCccceeeEcCCCCCchHH
Confidence 6777888887777664 34455567777888887763321110 01111111 22477777777777763
Q ss_pred ---ccccccCCCCCcEEEccCCCCccc-Ccc----ccC-CCCCCEEECcCCCCC-----ccCcccccCCCCcEEEccCCC
Q psy6452 514 ---IPEDIGNLICLEKLNISHNKVYKL-PES----FAN-LKSLKILDVSYNKLT-----MLPDGFVMLSNLTTFYAQRKY 579 (594)
Q Consensus 514 ---ip~~~~~l~~L~~L~Ls~N~l~~l-p~~----~~~-l~~L~~L~Ls~N~l~-----~ip~~l~~l~~L~~L~L~~N~ 579 (594)
++..+..+++|++|+|++|+++.. +.. +.. .++|++|+|++|+|+ .+|..+..+++|++|++++|+
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 455566677777777777777633 122 221 567777777777777 466667777777777777777
Q ss_pred CcccCHhHH
Q psy6452 580 WMFLTISLL 588 (594)
Q Consensus 580 l~~l~~~~~ 588 (594)
++......+
T Consensus 410 i~~~~~~~l 418 (461)
T 1z7x_W 410 LGDAGILQL 418 (461)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 765544333
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=5.9e-30 Score=275.28 Aligned_cols=386 Identities=15% Similarity=0.080 Sum_probs=253.4
Q ss_pred CccEEecCCCCCcccChhh----hccCcEEEccCccccccccccccCCCCCccccCCCCccccccccccccccccccccc
Q psy6452 151 ALSTRTFCDHELQSIEDDI----LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTEL 226 (594)
Q Consensus 151 ~L~~l~l~~n~l~~ip~~~----l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~ 226 (594)
.++.++++++.++..+... +++|++|+|++|.+++.... .+
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-----------------------------------~l 48 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK-----------------------------------DI 48 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHH-----------------------------------HH
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHH-----------------------------------HH
Confidence 4568888888887666432 77899999999988753210 11
Q ss_pred ccCccCCCcccEEEccCCCCcccch-HhhhcCC----CCCEEECCCCCCCCcc--ccchhhhhcCCCCCEEEcCCCCCCC
Q psy6452 227 NCCNKQYHDIFTVNLSHQDINFVQE-SMSQKLT----NLTVLDLSHNNHQDIN--FVQESMSQKLTNLIVLDLSHNKLSE 299 (594)
Q Consensus 227 ~~~~~~l~~L~~L~Ls~n~l~~l~~-~~f~~l~----~L~~L~Ls~N~l~~i~--~l~~~~~~~l~~L~~L~Ls~N~l~~ 299 (594)
+..+..+++|++|+|++|.++.... ..+..++ +|++|+|++|.+++.. .+ +..+..+++|++|+|++|.++.
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l-~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL-SSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH-HHHTTSCTTCCEEECCSSBCHH
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH-HHHHccCCceeEEECCCCcCch
Confidence 2223446778888888888876443 3334455 6888888888865321 22 3445678888888888888763
Q ss_pred C--CC-----cCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhc-----cCCCCcEEEC
Q psy6452 300 L--PD-----FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV-----HFCKLVKLDI 367 (594)
Q Consensus 300 l--p~-----~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~-----~l~~L~~L~L 367 (594)
. .. +...++|++|++++|+++.......... +...++|++|++++|.++......+. ..++|++|++
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L 206 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV-LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH-HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH-HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEc
Confidence 2 11 2235678888888888775321111000 11125788888888887754333222 3568888888
Q ss_pred CCCCCCCCCCc------cccCCccEEeCCCCCCCCCC-----chhhhcccCcccEEECcCCCCccCC----ccHHHhhhc
Q psy6452 368 SHNQIKILHKP------RCTHTLQTFSMNHNIGMKIP-----EWFWYQEFLCLKELNMSSTDPFFEH----LPIWLLNHM 432 (594)
Q Consensus 368 s~N~l~~l~~~------~~~~~L~~L~L~~N~~~~ip-----~~~~~~~~~~L~~L~Ls~n~~~~~~----lp~~~~~~~ 432 (594)
++|.++..... ...++|++|++++|.++... ..+ +..+++|+.|++++|. +.+. ++..
T Consensus 207 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~-~~~~~~L~~L~L~~n~-l~~~~~~~l~~~----- 279 (461)
T 1z7x_W 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGL-LHPSSRLRTLWIWECG-ITAKGCGDLCRV----- 279 (461)
T ss_dssp TTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHH-TSTTCCCCEEECTTSC-CCHHHHHHHHHH-----
T ss_pred cCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHH-hcCCCCceEEECcCCC-CCHHHHHHHHHH-----
Confidence 88887763211 22457888888888665432 111 2357889999998874 2221 2322
Q ss_pred ccccccccCCCcEEEcCCccccccCcccccc-----CCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCc
Q psy6452 433 ELKENGVFSNLISLHMQNTAAVMSNVSQLKY-----LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLS 507 (594)
Q Consensus 433 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls 507 (594)
+..+++|++|++++|.++...+..+.. .++|+.|++++|.+... ....++..+..+++|++|+|+
T Consensus 280 ----l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~------~~~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 280 ----LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA------CCSHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp ----HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG------GHHHHHHHHHHCSSCCEEECC
T ss_pred ----HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH------HHHHHHHHHhhCCCccEEEcc
Confidence 233678999999999887665555543 36899999999743321 112356677788999999999
Q ss_pred cccCccc-cc----cccC-CCCCcEEEccCCCCc-----ccCccccCCCCCCEEECcCCCCCcc-----Cccc-ccCCCC
Q psy6452 508 NVQLNCI-PE----DIGN-LICLEKLNISHNKVY-----KLPESFANLKSLKILDVSYNKLTML-----PDGF-VMLSNL 570 (594)
Q Consensus 508 ~N~l~~i-p~----~~~~-l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~~i-----p~~l-~~l~~L 570 (594)
+|.|+.. +. .+.. .++|++|+|++|+++ .+|..+..+++|++|+|++|+|+.. .+.+ ....+|
T Consensus 350 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L 429 (461)
T 1z7x_W 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 429 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCC
T ss_pred CCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcch
Confidence 9999843 22 2332 689999999999999 6788888899999999999999832 2222 234579
Q ss_pred cEEEccCCCCcccCHhHHhh
Q psy6452 571 TTFYAQRKYWMFLTISLLCY 590 (594)
Q Consensus 571 ~~L~L~~N~l~~l~~~~~~~ 590 (594)
+.|.+.++.+.......+..
T Consensus 430 ~~L~~~~~~~~~~~~~~l~~ 449 (461)
T 1z7x_W 430 EQLVLYDIYWSEEMEDRLQA 449 (461)
T ss_dssp CEEECTTCCCCHHHHHHHHH
T ss_pred hheeecccccCHHHHHHHHH
Confidence 99999998887665555443
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1e-27 Score=256.47 Aligned_cols=241 Identities=22% Similarity=0.288 Sum_probs=163.9
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
.++..++.++.||..+.++++.|+|++|+|+++.+ ..|.++
T Consensus 47 ~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~---------------------------------------~~~~~l 87 (440)
T 3zyj_A 47 KVICVRKNLREVPDGISTNTRLLNLHENQIQIIKV---------------------------------------NSFKHL 87 (440)
T ss_dssp EEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECT---------------------------------------TTTSSC
T ss_pred EEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCH---------------------------------------HHhhCC
Confidence 44556778889998888889999999999887651 223456
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~~ 311 (594)
++|++|+|++|+|+.+++..|.++++|++|+|++|+++. ++...|..+++|++|+|++|.++.++. |..+++|++
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 164 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT---IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS---CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe---eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE
Confidence 788888888888888887778888888888888888554 566667777888888888887776663 666777777
Q ss_pred EeccCC-ccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCC
Q psy6452 312 LDISHN-NFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMN 390 (594)
Q Consensus 312 L~Ls~N-~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~ 390 (594)
|++++| .++.+ +...|.++++|++|++++|.++.++.
T Consensus 165 L~l~~~~~l~~i-----------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~------------- 202 (440)
T 3zyj_A 165 LDLGELKRLSYI-----------------------------SEGAFEGLSNLRYLNLAMCNLREIPN------------- 202 (440)
T ss_dssp EECCCCTTCCEE-----------------------------CTTTTTTCSSCCEEECTTSCCSSCCC-------------
T ss_pred eCCCCCCCccee-----------------------------CcchhhcccccCeecCCCCcCccccc-------------
Confidence 777663 33333 33344566777777777777664321
Q ss_pred CCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceE
Q psy6452 391 HNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470 (594)
Q Consensus 391 ~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 470 (594)
+..+++|+.|++++ |.+++.
T Consensus 203 ------------~~~l~~L~~L~Ls~----------------------------------N~l~~~-------------- 222 (440)
T 3zyj_A 203 ------------LTPLIKLDELDLSG----------------------------------NHLSAI-------------- 222 (440)
T ss_dssp ------------CTTCSSCCEEECTT----------------------------------SCCCEE--------------
T ss_pred ------------cCCCcccCEEECCC----------------------------------CccCcc--------------
Confidence 11222222222222 222221
Q ss_pred eCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccc-cccCCCCCcEEEccCCCCcccCc-cccCCCCCC
Q psy6452 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKVYKLPE-SFANLKSLK 548 (594)
Q Consensus 471 ~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~ 548 (594)
.|..+..+++|+.|+|++|+|+.++. .|..+++|+.|+|++|+|+.+|. .|..+++|+
T Consensus 223 --------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 223 --------------------RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp --------------------CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred --------------------ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 13344456677788888888886644 47788888888888888887765 567788888
Q ss_pred EEECcCCCCC
Q psy6452 549 ILDVSYNKLT 558 (594)
Q Consensus 549 ~L~Ls~N~l~ 558 (594)
.|+|++|.+.
T Consensus 283 ~L~L~~Np~~ 292 (440)
T 3zyj_A 283 RIHLHHNPWN 292 (440)
T ss_dssp EEECCSSCEE
T ss_pred EEEcCCCCcc
Confidence 8888888776
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.7e-28 Score=254.73 Aligned_cols=173 Identities=18% Similarity=0.165 Sum_probs=137.0
Q ss_pred EecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCCC
Q psy6452 155 RTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYH 234 (594)
Q Consensus 155 l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l~ 234 (594)
.+.+++.++.||....++|++|++++|+++++++ ..+.+++
T Consensus 36 c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~---------------------------------------~~~~~l~ 76 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISN---------------------------------------SDLQRCV 76 (353)
T ss_dssp EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECT---------------------------------------TTTTTCT
T ss_pred eeCCCCCcccccccccccCcEEECCCCcCcccCH---------------------------------------HHhccCC
Confidence 4567889999999888899999999999998652 1234578
Q ss_pred cccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC---cCCCcCccE
Q psy6452 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD---FLNFKVLKE 311 (594)
Q Consensus 235 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~---~~~l~~L~~ 311 (594)
+|++|++++|+|+.+++..|.++++|++|++++|++++ ++...|+.+++|++|++++|+++.+|. |..+++|++
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN---LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS---CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc---CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcE
Confidence 99999999999999988889999999999999999665 677778899999999999999998875 778999999
Q ss_pred EeccCC-ccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCC
Q psy6452 312 LDISHN-NFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374 (594)
Q Consensus 312 L~Ls~N-~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 374 (594)
|++++| .++.++...+. ..++|++|++++|.++++.+..|..+++|++|++++|.++.
T Consensus 154 L~l~~n~~~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFA-----GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp EEEEESSSCCEECTTTTT-----TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred EECCCCccccccCHHHcc-----CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 999998 47766543221 12567777777777776666666666677777777666654
No 50
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.3e-28 Score=249.99 Aligned_cols=260 Identities=17% Similarity=0.194 Sum_probs=201.1
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEe
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELD 313 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~ 313 (594)
.+++.++++.+.+...+...+..+++|++|+|++|.+++ +++..|..+++|++|+|++|.++.+++|..+++|++|+
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 86 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ---ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLD 86 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCC---CCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEE
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCc---CCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEE
Confidence 457778889999988888888888999999999999665 56677889999999999999999777788999999999
Q ss_pred ccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCC
Q psy6452 314 ISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNI 393 (594)
Q Consensus 314 Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~ 393 (594)
+++|.+++++.. ++|++|++++|.++.++... +++|++|++++|+++++.+..
T Consensus 87 Ls~n~l~~l~~~----------~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~-------------- 139 (317)
T 3o53_A 87 LNNNYVQELLVG----------PSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLD-------------- 139 (317)
T ss_dssp CCSSEEEEEEEC----------TTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBC--------------
T ss_pred CcCCccccccCC----------CCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchh--------------
Confidence 999999886621 46777777777766655432 455666666666665432211
Q ss_pred CCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCcccc-ccCCCcceEeC
Q psy6452 394 GMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL-KYLKNIKYLNC 472 (594)
Q Consensus 394 ~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L 472 (594)
+..++ +|++|++++|.+++..+..+ ..+++|++|++
T Consensus 140 ---------~~~l~----------------------------------~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 140 ---------EGCRS----------------------------------RVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp ---------TGGGS----------------------------------SEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred ---------hhccC----------------------------------CCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 12333 55555555566666656655 47889999999
Q ss_pred CCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEEC
Q psy6452 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDV 552 (594)
Q Consensus 473 s~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 552 (594)
++|. +..+|. ...+++|++|+|++|+|+.+|..+..+++|++|+|++|+|+.+|..+..+++|+.|++
T Consensus 177 ~~N~-----------l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 177 QYNF-----------IYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244 (317)
T ss_dssp TTSC-----------CCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred CCCc-----------Cccccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEc
Confidence 9963 334432 2347899999999999999988888999999999999999999888888999999999
Q ss_pred cCCCCC--ccCcccccCCCCcEEEccCC
Q psy6452 553 SYNKLT--MLPDGFVMLSNLTTFYAQRK 578 (594)
Q Consensus 553 s~N~l~--~ip~~l~~l~~L~~L~L~~N 578 (594)
++|+++ .+|..+..+++|+.|+++++
T Consensus 245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCCccCcCHHHHHhccccceEEECCCc
Confidence 999998 66777888899999888843
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.1e-28 Score=251.19 Aligned_cols=273 Identities=19% Similarity=0.218 Sum_probs=189.0
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~ 311 (594)
+.....++++++++.+|...+ ++|++|++++|.+++ ++...|..+++|++|++++|.++.++ .|.++++|++
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNNRITY---ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC---TTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCeEeeCCCCCccccccccc---ccCcEEECCCCcCcc---cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 444558889999999987554 588999999999554 66667788999999999999988764 4888888899
Q ss_pred EeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCCh-hhhccCCCCcEEECCCCC-CCCCCCccccCCccEEeC
Q psy6452 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPL-CLQVHFCKLVKLDISHNQ-IKILHKPRCTHTLQTFSM 389 (594)
Q Consensus 312 L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~~L~~L~L 389 (594)
|++++|+++++|...+.. .++|++|++++|+++.++. ..|.++++|++|++++|. ++.+.+..
T Consensus 105 L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---------- 169 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKP-----LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD---------- 169 (353)
T ss_dssp EECCSSCCSSCCHHHHTT-----CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT----------
T ss_pred EECCCCcCCcCCHhHhCC-----CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHH----------
Confidence 988888888877653321 2466777777777766665 555666666666666663 44332111
Q ss_pred CCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcce
Q psy6452 390 NHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKY 469 (594)
Q Consensus 390 ~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 469 (594)
+..++ +|+.|++++|.+++..+..+..+++|++
T Consensus 170 -------------~~~l~----------------------------------~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 170 -------------FAGLT----------------------------------FLEELEIDASDLQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp -------------TTTCC----------------------------------EEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred -------------ccCCC----------------------------------CCCEEECCCCCcCccCHHHHhccccCCe
Confidence 12333 4444555555555555666777777777
Q ss_pred EeCCCCcCcccccccccccccCcccc-cCCCCCcEEeCccccCcccccc----ccCCCCCcEEEccCCCCc-----ccCc
Q psy6452 470 LNCSNDIDHRKSQDFVNVLWELPLSI-LYLSSIQELHLSNVQLNCIPED----IGNLICLEKLNISHNKVY-----KLPE 539 (594)
Q Consensus 470 L~Ls~n~~~~~~~~~~n~~~~ip~~~-~~l~~L~~L~Ls~N~l~~ip~~----~~~l~~L~~L~Ls~N~l~-----~lp~ 539 (594)
|++++| .++.+|..+ ..+++|+.|++++|.++.++.. ......++.++|+++.++ .+|.
T Consensus 203 L~l~~n-----------~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 203 LILHMK-----------QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp EEEECS-----------CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred ecCCCC-----------ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence 777774 234444433 3467788888888887755321 234567778888888776 4667
Q ss_pred cccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcccCH
Q psy6452 540 SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFLTI 585 (594)
Q Consensus 540 ~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l~~ 585 (594)
++..+++|++|+|++|+|+.+|.. |..+++|++|++++|+++.-.+
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 778888888888888888888877 5788888888888888876543
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=1.2e-27 Score=244.17 Aligned_cols=250 Identities=22% Similarity=0.273 Sum_probs=172.4
Q ss_pred CcccEEEccCCCCcc--cchHhhhcCCCCCEEECCC-CCCCCccccchhhhhcCCCCCEEEcCCCCCC-CCC-CcCCCcC
Q psy6452 234 HDIFTVNLSHQDINF--VQESMSQKLTNLTVLDLSH-NNHQDINFVQESMSQKLTNLIVLDLSHNKLS-ELP-DFLNFKV 308 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~--l~~~~f~~l~~L~~L~Ls~-N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp-~~~~l~~ 308 (594)
.+++.|+|++|.++. ..+..|.++++|++|++++ |.+++ .+| ..+..+++|++|+|++|.++ .+| .|..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~--~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG--PIP-PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES--CCC-GGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc--cCC-hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 567888888888775 3334567777788888874 76543 233 33467777777777777776 555 3666777
Q ss_pred ccEEeccCCcccc-CchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEE
Q psy6452 309 LKELDISHNNFES-MPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTF 387 (594)
Q Consensus 309 L~~L~Ls~N~l~~-lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L 387 (594)
|++|++++|.+++ +|.. |..+++|++|++++|++++.
T Consensus 127 L~~L~Ls~N~l~~~~p~~------------------------------~~~l~~L~~L~L~~N~l~~~------------ 164 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPS------------------------------ISSLPNLVGITFDGNRISGA------------ 164 (313)
T ss_dssp CCEEECCSSEEESCCCGG------------------------------GGGCTTCCEEECCSSCCEEE------------
T ss_pred CCEEeCCCCccCCcCChH------------------------------HhcCCCCCeEECcCCcccCc------------
Confidence 7777777777663 4432 23566666777766666531
Q ss_pred eCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCc
Q psy6452 388 SMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNI 467 (594)
Q Consensus 388 ~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 467 (594)
+|..+ ..++ ++|+.|++++|.+++..+..+..++ |
T Consensus 165 ---------~p~~l--~~l~---------------------------------~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 165 ---------IPDSY--GSFS---------------------------------KLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp ---------CCGGG--GCCC---------------------------------TTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred ---------CCHHH--hhhh---------------------------------hcCcEEECcCCeeeccCChHHhCCc-c
Confidence 12211 1111 1445555555555555566666665 7
Q ss_pred ceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCc-ccCccccCCCC
Q psy6452 468 KYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVY-KLPESFANLKS 546 (594)
Q Consensus 468 ~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 546 (594)
+.|++++| ...+..|..+..+++|+.|+|++|.++..+..+..+++|++|+|++|+|+ .+|.++..+++
T Consensus 200 ~~L~Ls~N----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 200 AFVDLSRN----------MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp SEEECCSS----------EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred cEEECcCC----------cccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence 77777776 44455667777888888888888888866555888899999999999998 67888999999
Q ss_pred CCEEECcCCCCC-ccCcccccCCCCcEEEccCCC-CcccC
Q psy6452 547 LKILDVSYNKLT-MLPDGFVMLSNLTTFYAQRKY-WMFLT 584 (594)
Q Consensus 547 L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~-l~~l~ 584 (594)
|++|+|++|+|+ .+|.. ..+++|+.+++++|+ +...|
T Consensus 270 L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 999999999998 67765 788999999999998 44433
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.9e-28 Score=250.52 Aligned_cols=245 Identities=18% Similarity=0.165 Sum_probs=197.5
Q ss_pred CccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcC
Q psy6452 229 CNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKV 308 (594)
Q Consensus 229 ~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~ 308 (594)
.+..+++|++|+|++|+|+.+++..|..+++|++|+|++|.+++ +++ +..+++|++|++++|.++.++. .++
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~--~~~l~~L~~L~Ls~n~l~~l~~---~~~ 100 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE---TLD--LESLSTLRTLDLNNNYVQELLV---GPS 100 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE---EEE--ETTCTTCCEEECCSSEEEEEEE---CTT
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc---chh--hhhcCCCCEEECcCCccccccC---CCC
Confidence 34456799999999999999999999999999999999999765 333 6899999999999999987763 389
Q ss_pred ccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEe
Q psy6452 309 LKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFS 388 (594)
Q Consensus 309 L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~ 388 (594)
|++|++++|.+++++... .++|++|++++|+++.++...|..+++|++|++++|.++++.+..+.
T Consensus 101 L~~L~l~~n~l~~~~~~~--------~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------- 165 (317)
T 3o53_A 101 IETLHAANNNISRVSCSR--------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA------- 165 (317)
T ss_dssp CCEEECCSSCCSEEEECC--------CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG-------
T ss_pred cCEEECCCCccCCcCccc--------cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh-------
Confidence 999999999999876432 26899999999999999998888999999999999999875433221
Q ss_pred CCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcc
Q psy6452 389 MNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIK 468 (594)
Q Consensus 389 L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 468 (594)
..+++|+.|++++| .++.. .....+++|+
T Consensus 166 ---------------~~l~~L~~L~L~~N----------------------------------~l~~~--~~~~~l~~L~ 194 (317)
T 3o53_A 166 ---------------ASSDTLEHLNLQYN----------------------------------FIYDV--KGQVVFAKLK 194 (317)
T ss_dssp ---------------GGTTTCCEEECTTS----------------------------------CCCEE--ECCCCCTTCC
T ss_pred ---------------hccCcCCEEECCCC----------------------------------cCccc--ccccccccCC
Confidence 23344444444443 23222 1122366777
Q ss_pred eEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCc--ccCccccCCCC
Q psy6452 469 YLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVY--KLPESFANLKS 546 (594)
Q Consensus 469 ~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~ 546 (594)
+|++++| .+..+|..+..+++|+.|+|++|.|+.+|..+..+++|+.|+|++|.++ .+|..+..+++
T Consensus 195 ~L~Ls~N-----------~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~ 263 (317)
T 3o53_A 195 TLDLSSN-----------KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (317)
T ss_dssp EEECCSS-----------CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred EEECCCC-----------cCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence 7777774 4555666788889999999999999999999999999999999999999 66778899999
Q ss_pred CCEEECcCC-CCC
Q psy6452 547 LKILDVSYN-KLT 558 (594)
Q Consensus 547 L~~L~Ls~N-~l~ 558 (594)
|+.|++++| .++
T Consensus 264 L~~l~l~~~~~l~ 276 (317)
T 3o53_A 264 VQTVAKQTVKKLT 276 (317)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ceEEECCCchhcc
Confidence 999999954 444
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=9.3e-27 Score=236.63 Aligned_cols=245 Identities=21% Similarity=0.303 Sum_probs=166.0
Q ss_pred cEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCC----CccccCCcc
Q psy6452 310 KELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH----KPRCTHTLQ 385 (594)
Q Consensus 310 ~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~----~~~~~~~L~ 385 (594)
+.++++++.++.+|.. +++++++|++++|.++.++..+|.++++|++|++++|.++.+. .....++|+
T Consensus 10 ~~l~c~~~~l~~ip~~--------~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 81 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTG--------IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81 (306)
T ss_dssp TEEECCSSCCSSCCSC--------CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCC
T ss_pred CEEEcCCCCcccCCCC--------CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccC
Confidence 3445555555555432 2245555555555555555555555555555555555555431 011234555
Q ss_pred EEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCC
Q psy6452 386 TFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLK 465 (594)
Q Consensus 386 ~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 465 (594)
+|++++|.+..+|..+ ..+++|+.|++++|+ + ..++. ...+..+++|++|++++|.+.+..+..+..++
T Consensus 82 ~L~Ls~n~i~~l~~~~--~~l~~L~~L~l~~n~-l-~~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 150 (306)
T 2z66_A 82 YLDLSFNGVITMSSNF--LGLEQLEHLDFQHSN-L-KQMSE-------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150 (306)
T ss_dssp EEECCSCSEEEEEEEE--ETCTTCCEEECTTSE-E-ESSTT-------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCT
T ss_pred EEECCCCccccChhhc--CCCCCCCEEECCCCc-c-ccccc-------chhhhhccCCCEEECCCCcCCccchhhcccCc
Confidence 6666665555555543 566777777777753 1 11111 12344567888888888888888888888889
Q ss_pred CcceEeCCCCcCcccccccccccc-cCcccccCCCCCcEEeCccccCccc-cccccCCCCCcEEEccCCCCcccCc-ccc
Q psy6452 466 NIKYLNCSNDIDHRKSQDFVNVLW-ELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICLEKLNISHNKVYKLPE-SFA 542 (594)
Q Consensus 466 ~L~~L~Ls~n~~~~~~~~~~n~~~-~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~lp~-~~~ 542 (594)
+|++|++++| ...+ .+|..+..+++|++|+|++|.|+.+ |..+..+++|++|+|++|+++.++. .+.
T Consensus 151 ~L~~L~l~~n----------~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 220 (306)
T 2z66_A 151 SLEVLKMAGN----------SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220 (306)
T ss_dssp TCCEEECTTC----------EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred CCCEEECCCC----------ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence 9999999986 3333 4677888889999999999999977 5568889999999999999998865 788
Q ss_pred CCCCCCEEECcCCCCCcc-CcccccCC-CCcEEEccCCCCccc
Q psy6452 543 NLKSLKILDVSYNKLTML-PDGFVMLS-NLTTFYAQRKYWMFL 583 (594)
Q Consensus 543 ~l~~L~~L~Ls~N~l~~i-p~~l~~l~-~L~~L~L~~N~l~~l 583 (594)
.+++|++|+|++|+|+.+ |..+..++ +|++|+|++|+++.-
T Consensus 221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 889999999999999854 55677774 899999999998764
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.6e-27 Score=240.76 Aligned_cols=272 Identities=21% Similarity=0.231 Sum_probs=179.6
Q ss_pred ccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCC---C-CcCCCcCccE
Q psy6452 236 IFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSEL---P-DFLNFKVLKE 311 (594)
Q Consensus 236 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~l---p-~~~~l~~L~~ 311 (594)
-+.++++++.++.+|...+ ++|++|++++|+++. ++..+|..+++|++|+|++|.++.+ + .+..+++|++
T Consensus 9 ~~~l~c~~~~l~~ip~~~~---~~l~~L~L~~n~l~~---i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 82 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGIP---SSATRLELESNKLQS---LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82 (306)
T ss_dssp TTEEECCSSCCSSCCSCCC---TTCCEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred CCEEEcCCCCcccCCCCCC---CCCCEEECCCCccCc---cCHhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence 3578888888888887443 678888888888554 6677778888888888888888754 2 4557788888
Q ss_pred EeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCCh-hhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCC
Q psy6452 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPL-CLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMN 390 (594)
Q Consensus 312 L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~ 390 (594)
|++++|.++.+|..+.. .++|++|++++|.++.++. ..|..+++|++|++++|.++++.+..
T Consensus 83 L~Ls~n~i~~l~~~~~~------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----------- 145 (306)
T 2z66_A 83 LDLSFNGVITMSSNFLG------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI----------- 145 (306)
T ss_dssp EECCSCSEEEEEEEEET------CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-----------
T ss_pred EECCCCccccChhhcCC------CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh-----------
Confidence 88888888877654321 2567777777777766654 45566777777777777665432211
Q ss_pred CCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccc-cCccccccCCCcce
Q psy6452 391 HNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVM-SNVSQLKYLKNIKY 469 (594)
Q Consensus 391 ~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~ 469 (594)
+..++ +|+.|++++|.+++ ..+..+..+++|++
T Consensus 146 ------------~~~l~----------------------------------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 146 ------------FNGLS----------------------------------SLEVLKMAGNSFQENFLPDIFTELRNLTF 179 (306)
T ss_dssp ------------TTTCT----------------------------------TCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred ------------cccCc----------------------------------CCCEEECCCCccccccchhHHhhCcCCCE
Confidence 12333 44444444455544 34556667777777
Q ss_pred EeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccc-cccCCCCCcEEEccCCCCccc-CccccCC-CC
Q psy6452 470 LNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKVYKL-PESFANL-KS 546 (594)
Q Consensus 470 L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l-~~ 546 (594)
|++++| ...+..|..+..+++|++|+|++|.++.++. .+..+++|++|+|++|+++.+ |..+..+ ++
T Consensus 180 L~Ls~n----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 249 (306)
T 2z66_A 180 LDLSQC----------QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249 (306)
T ss_dssp EECTTS----------CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred EECCCC----------CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence 777775 2333335667777888888888888887765 477888888888888888865 4467777 48
Q ss_pred CCEEECcCCCCCccCc---ccccCCCCcEEEccCCCCcccCHh
Q psy6452 547 LKILDVSYNKLTMLPD---GFVMLSNLTTFYAQRKYWMFLTIS 586 (594)
Q Consensus 547 L~~L~Ls~N~l~~ip~---~l~~l~~L~~L~L~~N~l~~l~~~ 586 (594)
|++|+|++|+++.-.. ....+...+.+.+..+.+..-.+.
T Consensus 250 L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 250 LAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp CCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred CCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 8888888888873211 122334444455555555543333
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=7.3e-26 Score=250.50 Aligned_cols=269 Identities=25% Similarity=0.247 Sum_probs=218.2
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEe
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELD 313 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~ 313 (594)
.+++.|++++|.|+.+|...+ ++|++|+|++|.|+. +|. .+++|++|+|++|+|+.+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~---lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTS---LPA----LPPELRTLEVSGNQLTSLPV--LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSC---CCC----CCTTCCEEEECSCCCSCCCC--CCTTCCEEE
T ss_pred CCCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCC---CCC----cCCCCCEEEcCCCcCCcCCC--CCCCCCEEE
Confidence 358999999999999987654 799999999999765 443 57899999999999999987 779999999
Q ss_pred ccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCC
Q psy6452 314 ISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNI 393 (594)
Q Consensus 314 Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~ 393 (594)
+++|.++++|. .+.+|+.|++++|+++.+|.. +++|++|++++|.+++++. ..++|+.|++++|.
T Consensus 108 Ls~N~l~~l~~---------~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 108 IFSNPLTHLPA---------LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQ 172 (622)
T ss_dssp ECSCCCCCCCC---------CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC
T ss_pred CcCCcCCCCCC---------CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC--ccCCCCEEECCCCC
Confidence 99999999875 236899999999999988863 4789999999999988753 44678888888887
Q ss_pred CCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCC
Q psy6452 394 GMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS 473 (594)
Q Consensus 394 ~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 473 (594)
+..+|. .+++|+.|++++ |.+++... .+++|+.|+++
T Consensus 173 l~~l~~-----~~~~L~~L~Ls~----------------------------------N~l~~l~~----~~~~L~~L~L~ 209 (622)
T 3g06_A 173 LTSLPM-----LPSGLQELSVSD----------------------------------NQLASLPT----LPSELYKLWAY 209 (622)
T ss_dssp CSCCCC-----CCTTCCEEECCS----------------------------------SCCSCCCC----CCTTCCEEECC
T ss_pred CCCCcc-----cCCCCcEEECCC----------------------------------CCCCCCCC----ccchhhEEECc
Confidence 777662 234455555554 44443221 24678888888
Q ss_pred CCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEECc
Q psy6452 474 NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVS 553 (594)
Q Consensus 474 ~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls 553 (594)
+| .+..+|.. +++|+.|+|++|+|+.+| ..+++|+.|+|++|+|+.+|. .+++|+.|+|+
T Consensus 210 ~N-----------~l~~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 210 NN-----------RLTSLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVY 269 (622)
T ss_dssp SS-----------CCSSCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred CC-----------cccccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCC
Confidence 85 44556643 478999999999999998 466899999999999999987 67899999999
Q ss_pred CCCCCccCcccccCCCCcEEEccCCCCcccCHhHHhhhh
Q psy6452 554 YNKLTMLPDGFVMLSNLTTFYAQRKYWMFLTISLLCYLM 592 (594)
Q Consensus 554 ~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 592 (594)
+|+|+.||..+..+++|+.|+|++|+++...+..+..+.
T Consensus 270 ~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 270 RNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp SSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 999999999999999999999999999998888776654
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=9.8e-26 Score=242.01 Aligned_cols=152 Identities=18% Similarity=0.204 Sum_probs=111.8
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
..+..+++++.||..+.+++++|+|++|+|+++. +..|.++
T Consensus 58 ~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~---------------------------------------~~~~~~l 98 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQ---------------------------------------ADTFRHL 98 (452)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEEC---------------------------------------TTTTTTC
T ss_pred EEEECCCCcCccCCCCCCCccEEECcCCcCceEC---------------------------------------HHHcCCC
Confidence 4556677888899888888999999999888765 1233557
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~ 311 (594)
++|++|+|++|+|+.+++..|.++++|++|+|++|+++. +++..|..+++|++|+|++|.++.++ .|..+++|++
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 175 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV---IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB---CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc---cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccE
Confidence 788888888888888888888888888888888888554 66777778888888888888888776 3677778888
Q ss_pred EeccC-CccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCC
Q psy6452 312 LDISH-NNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH 376 (594)
Q Consensus 312 L~Ls~-N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 376 (594)
|++++ |.++.++. ..|.++++|++|++++|++++++
T Consensus 176 L~l~~~~~l~~i~~-----------------------------~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 176 LDLGELKKLEYISE-----------------------------GAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp EECCCCTTCCEECT-----------------------------TTTTTCTTCCEEECTTSCCSSCC
T ss_pred EeCCCCCCccccCh-----------------------------hhccCCCCCCEEECCCCcccccc
Confidence 88777 34444443 33445666666666666666543
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.7e-25 Score=240.05 Aligned_cols=245 Identities=20% Similarity=0.263 Sum_probs=172.3
Q ss_pred CCCEEEcCCCCCCCCCCcCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEE
Q psy6452 286 NLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKL 365 (594)
Q Consensus 286 ~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 365 (594)
....++.+++.++.+|.-. .++|++|+|++|.++.++...+. ..++|+.|+|++|.++.++...|.++++|++|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 128 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFR-----HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTT-----TCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcC-----CCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence 4567777777777777311 25777888888887776543322 12577777777777777777777777777777
Q ss_pred ECCCCCCCCCCCccc--cCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCC
Q psy6452 366 DISHNQIKILHKPRC--THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNL 443 (594)
Q Consensus 366 ~Ls~N~l~~l~~~~~--~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L 443 (594)
+|++|+++.++...+ .++|++|++++|.+..++... +..+++|+.|++++|+
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~~~------------------------- 182 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYA-FNRVPSLMRLDLGELK------------------------- 182 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTT-TTTCTTCCEEECCCCT-------------------------
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhH-HhcCCcccEEeCCCCC-------------------------
Confidence 777777777665433 346667777766666666544 3555555555555532
Q ss_pred cEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccc-cccccCCC
Q psy6452 444 ISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLI 522 (594)
Q Consensus 444 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~ 522 (594)
.+.......|..+++|++|++++| .+..+| .+..+++|++|+|++|.|+.+ |..|.+++
T Consensus 183 --------~l~~i~~~~~~~l~~L~~L~L~~n-----------~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 242 (452)
T 3zyi_A 183 --------KLEYISEGAFEGLFNLKYLNLGMC-----------NIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242 (452)
T ss_dssp --------TCCEECTTTTTTCTTCCEEECTTS-----------CCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCT
T ss_pred --------CccccChhhccCCCCCCEEECCCC-----------cccccc-cccccccccEEECcCCcCcccCcccccCcc
Confidence 333334456777778888888875 334444 466778888888888888866 45588888
Q ss_pred CCcEEEccCCCCccc-CccccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcc
Q psy6452 523 CLEKLNISHNKVYKL-PESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMF 582 (594)
Q Consensus 523 ~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ 582 (594)
+|+.|+|++|+++.+ +..|..+++|+.|+|++|+|+.+|.. +..+++|++|+|++|+|..
T Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 888888888888877 44788888888888888888877665 7788888888888888764
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=5.9e-26 Score=245.68 Aligned_cols=234 Identities=19% Similarity=0.220 Sum_probs=174.0
Q ss_pred CCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEeccCCccccCchhhhhccccccCCC
Q psy6452 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYK 337 (594)
Q Consensus 258 ~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~ 337 (594)
++|++|+|++|.+++ +++..|..+++|++|+|++|.++++++|..+++|++|+|++|.|+++|.. ++
T Consensus 34 ~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~----------~~ 100 (487)
T 3oja_A 34 WNVKELDLSGNPLSQ---ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG----------PS 100 (487)
T ss_dssp GGCCEEECCSSCCCC---CCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC----------TT
T ss_pred CCccEEEeeCCcCCC---CCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC----------CC
Confidence 378888888888655 55666788888888888888888666688888888888888888876531 46
Q ss_pred cceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCC
Q psy6452 338 HSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSST 417 (594)
Q Consensus 338 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n 417 (594)
|+.|++++|.++.++.. .+++|+.|++++|.++++.+.. +..
T Consensus 101 L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~-----------------------~~~------------ 142 (487)
T 3oja_A 101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLD-----------------------EGC------------ 142 (487)
T ss_dssp CCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBC-----------------------GGG------------
T ss_pred cCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchh-----------------------hcC------------
Confidence 66666666666665543 2456666666666666532211 122
Q ss_pred CCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccc-cCCCcceEeCCCCcCcccccccccccccCccccc
Q psy6452 418 DPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK-YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL 496 (594)
Q Consensus 418 ~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~ 496 (594)
+++|+.|++++|.+++..+..+. .+++|+.|++++|. +..+|. ..
T Consensus 143 ----------------------l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-----------l~~~~~-~~ 188 (487)
T 3oja_A 143 ----------------------RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-----------IYDVKG-QV 188 (487)
T ss_dssp ----------------------GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-----------CCEEEC-CC
T ss_pred ----------------------CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-----------cccccc-cc
Confidence 23566666666677776677765 78899999999863 333332 33
Q ss_pred CCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCC--ccCcccccCCCCcEEE
Q psy6452 497 YLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLT--MLPDGFVMLSNLTTFY 574 (594)
Q Consensus 497 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~ip~~l~~l~~L~~L~ 574 (594)
.+++|+.|+|++|.|+.+|..+..+++|+.|+|++|.|+.+|..+..+++|+.|++++|.+. .+|..+..++.|+.++
T Consensus 189 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~ 268 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (487)
T ss_dssp CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHH
T ss_pred cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEe
Confidence 57889999999999998888888889999999999999998888888899999999999988 6677788888888888
Q ss_pred cc
Q psy6452 575 AQ 576 (594)
Q Consensus 575 L~ 576 (594)
++
T Consensus 269 ~~ 270 (487)
T 3oja_A 269 KQ 270 (487)
T ss_dssp HH
T ss_pred cc
Confidence 86
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.8e-25 Score=224.70 Aligned_cols=217 Identities=18% Similarity=0.157 Sum_probs=181.6
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
.++.++++++.||...+++|++|+|++|+++++++ ..|..+
T Consensus 15 ~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~---------------------------------------~~~~~~ 55 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPA---------------------------------------ASFRAC 55 (285)
T ss_dssp EEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECT---------------------------------------TTTTTC
T ss_pred EEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCH---------------------------------------HHcccC
Confidence 66778889999998888999999999999998662 223557
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCC-CCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCcc
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNN-HQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLK 310 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~ 310 (594)
++|++|++++|.++.+.+..|.++++|++|++++|. ++. +++..+..+++|++|++++|.++.++ .|.++++|+
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 132 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS---VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC---CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc---cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC
Confidence 899999999999999988889999999999999997 655 55667789999999999999999875 378899999
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc--cCCccEEe
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC--THTLQTFS 388 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~~~L~~L~ 388 (594)
+|++++|.++.++...+. ..++|++|++++|+++.++...|.++++|++|++++|.++++.+..+ .++|+.|+
T Consensus 133 ~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 207 (285)
T 1ozn_A 133 YLYLQDNALQALPDDTFR-----DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207 (285)
T ss_dssp EEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred EEECCCCcccccCHhHhc-----cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEee
Confidence 999999999988765432 23689999999999999998888899999999999999998765543 35888888
Q ss_pred CCCCCCCCCCchhhhcccCcccEEECcCCC
Q psy6452 389 MNHNIGMKIPEWFWYQEFLCLKELNMSSTD 418 (594)
Q Consensus 389 L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~ 418 (594)
+++|.+..++... +..+++|+.|++++|.
T Consensus 208 l~~n~l~~~~~~~-~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 208 LFANNLSALPTEA-LAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCSSCCSCCCHHH-HTTCTTCCEEECCSSC
T ss_pred CCCCcCCcCCHHH-cccCcccCEEeccCCC
Confidence 8888888887654 4677888888888875
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.9e-26 Score=249.57 Aligned_cols=238 Identities=17% Similarity=0.163 Sum_probs=193.7
Q ss_pred cCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCcc
Q psy6452 231 KQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLK 310 (594)
Q Consensus 231 ~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~ 310 (594)
..+++|++|+|++|.|+.+++..|..+++|++|+|++|.+++ +++ +..+++|++|+|++|.|+.++.. ++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~~--l~~l~~L~~L~Ls~N~l~~l~~~---~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE---TLD--LESLSTLRTLDLNNNYVQELLVG---PSIE 102 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE---EEE--CTTCTTCCEEECCSSEEEEEEEC---TTCC
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC---Ccc--cccCCCCCEEEecCCcCCCCCCC---CCcC
Confidence 345689999999999999999899999999999999999765 333 68999999999999999987643 8999
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCC
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMN 390 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~ 390 (594)
+|++++|.+++++... .++|+.|++++|.++++++..|.++++|+.|+|++|.++++.+..+.
T Consensus 103 ~L~L~~N~l~~~~~~~--------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--------- 165 (487)
T 3oja_A 103 TLHAANNNISRVSCSR--------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA--------- 165 (487)
T ss_dssp EEECCSSCCCCEEECC--------CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG---------
T ss_pred EEECcCCcCCCCCccc--------cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh---------
Confidence 9999999999976432 26899999999999999888888999999999999999875432221
Q ss_pred CCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceE
Q psy6452 391 HNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470 (594)
Q Consensus 391 ~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 470 (594)
..+++|+.|++++| .+++. ..+..+++|+.|
T Consensus 166 -------------~~l~~L~~L~Ls~N----------------------------------~l~~~--~~~~~l~~L~~L 196 (487)
T 3oja_A 166 -------------ASSDTLEHLNLQYN----------------------------------FIYDV--KGQVVFAKLKTL 196 (487)
T ss_dssp -------------GGTTTCCEEECTTS----------------------------------CCCEE--ECCCCCTTCCEE
T ss_pred -------------hhCCcccEEecCCC----------------------------------ccccc--cccccCCCCCEE
Confidence 23444444444443 33333 122346777788
Q ss_pred eCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCc--ccCccccCCCCCC
Q psy6452 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVY--KLPESFANLKSLK 548 (594)
Q Consensus 471 ~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~ 548 (594)
++++| .+..+|..+..+++|+.|+|++|.|+.+|..+..+++|+.|++++|.+. .+|.++..++.|+
T Consensus 197 ~Ls~N-----------~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 197 DLSSN-----------KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (487)
T ss_dssp ECCSS-----------CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred ECCCC-----------CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence 88874 4455666788899999999999999999999999999999999999999 6777888899999
Q ss_pred EEECc
Q psy6452 549 ILDVS 553 (594)
Q Consensus 549 ~L~Ls 553 (594)
.++++
T Consensus 266 ~l~~~ 270 (487)
T 3oja_A 266 TVAKQ 270 (487)
T ss_dssp HHHHH
T ss_pred EEecc
Confidence 99886
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.8e-25 Score=229.51 Aligned_cols=240 Identities=20% Similarity=0.179 Sum_probs=174.8
Q ss_pred CcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCcc
Q psy6452 306 FKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQ 385 (594)
Q Consensus 306 l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~ 385 (594)
.+++++|+|++|.++.+|..++.. ++|++|++++|.++.+|..+ .++++|++|++++|.++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l------~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~------------ 140 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRL------SHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPLR------------ 140 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGG------TTCSEEEEESSCCCCCCSCG-GGGTTCSEEEEESCCCC------------
T ss_pred ccceeEEEccCCCchhcChhhhhC------CCCCEEECCCCCccchhHHH-hccCCCCEEECCCCccc------------
Confidence 356667777777776666554432 45666666666666555432 45666666666666655
Q ss_pred EEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCC
Q psy6452 386 TFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLK 465 (594)
Q Consensus 386 ~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 465 (594)
.+|..+ ..+++|+.|++++|+ ..+.+|..+........+..+++|++|++++|.++ ..|..+..++
T Consensus 141 ----------~lp~~l--~~l~~L~~L~L~~n~-~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~ 206 (328)
T 4fcg_A 141 ----------ALPASI--ASLNRLRELSIRACP-ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ 206 (328)
T ss_dssp ----------CCCGGG--GGCTTCCEEEEEEET-TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT
T ss_pred ----------cCcHHH--hcCcCCCEEECCCCC-CccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCC
Confidence 444433 566677777777653 45556554433222233456789999999999998 5677799999
Q ss_pred CcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCc-cccccccCCCCCcEEEccCCCCc-ccCccccC
Q psy6452 466 NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVY-KLPESFAN 543 (594)
Q Consensus 466 ~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 543 (594)
+|++|++++| .+..+|..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|++. .+|..+..
T Consensus 207 ~L~~L~L~~N-----------~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 275 (328)
T 4fcg_A 207 NLKSLKIRNS-----------PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275 (328)
T ss_dssp TCCEEEEESS-----------CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred CCCEEEccCC-----------CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc
Confidence 9999999995 45568888999999999999998776 77888999999999999998766 67889999
Q ss_pred CCCCCEEECcCCCCC-ccCcccccCCCCcEEEccCCCCcccCHhHHh
Q psy6452 544 LKSLKILDVSYNKLT-MLPDGFVMLSNLTTFYAQRKYWMFLTISLLC 589 (594)
Q Consensus 544 l~~L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~l~~l~~~~~~ 589 (594)
+++|++|+|++|++. .+|..+..+++|+.+++..|.+..++.....
T Consensus 276 l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~~~~~~ 322 (328)
T 4fcg_A 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPV 322 (328)
T ss_dssp CTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-------
T ss_pred CCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHhhhhcc
Confidence 999999999998776 8999999999999999999998888765443
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.1e-26 Score=236.94 Aligned_cols=259 Identities=15% Similarity=0.084 Sum_probs=177.9
Q ss_pred cCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhh------hcCCCCCEEEcCCCCCC-CCCC-
Q psy6452 231 KQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMS------QKLTNLIVLDLSHNKLS-ELPD- 302 (594)
Q Consensus 231 ~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~------~~l~~L~~L~Ls~N~l~-~lp~- 302 (594)
...++|++|++++|.+ .+|...+.. |++|+|++|.++.+ .++.... ..+++|++|+|++|.++ .+|.
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRLTVRAA-RIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEEEEEEE-ECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH---HhhcccccccccCC-CcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 4457899999999999 888776544 89999999997543 3444331 16899999999999998 5664
Q ss_pred c--CCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc
Q psy6452 303 F--LNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC 380 (594)
Q Consensus 303 ~--~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 380 (594)
+ ..+++|++|++++|+++++|..+.... ...+++|++|++++|+++.++...|.++++|++|++++|++.+...
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~-~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--- 190 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATRDAWLAELQ-QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--- 190 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSSSSHHHHHH-TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH---
T ss_pred HHHhcCCCccEEEccCCCCcchhHHHHHHH-HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH---
Confidence 4 789999999999999999875554321 1223678888888888888887777788888888888887653100
Q ss_pred cCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccc
Q psy6452 381 THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQ 460 (594)
Q Consensus 381 ~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 460 (594)
++..+.+..+++|+.|++++| .+++.
T Consensus 191 ----------------~~~~~~~~~l~~L~~L~L~~N----------------------------------~l~~~---- 216 (312)
T 1wwl_A 191 ----------------LISALCPLKFPTLQVLALRNA----------------------------------GMETP---- 216 (312)
T ss_dssp ----------------HHHHSCTTSCTTCCEEECTTS----------------------------------CCCCH----
T ss_pred ----------------HHHHHHhccCCCCCEEECCCC----------------------------------cCcch----
Confidence 011110122333333333332 22210
Q ss_pred cccCCCcceEeCCCCcCcccccccccccccCcc-cccCCCCCcEEeCccccCcccc--ccccCCCCCcEEEccCCCCccc
Q psy6452 461 LKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPL-SILYLSSIQELHLSNVQLNCIP--EDIGNLICLEKLNISHNKVYKL 537 (594)
Q Consensus 461 ~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~-~~~~l~~L~~L~Ls~N~l~~ip--~~~~~l~~L~~L~Ls~N~l~~l 537 (594)
+.++. .+..+++|++|+|++|+|+..+ ..+..+++|++|+|++|+|+.+
T Consensus 217 ----------------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i 268 (312)
T 1wwl_A 217 ----------------------------SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268 (312)
T ss_dssp ----------------------------HHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC
T ss_pred ----------------------------HHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh
Confidence 01111 1234567777777777777543 3356678888888888888888
Q ss_pred CccccCCCCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCccc
Q psy6452 538 PESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 538 p~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l 583 (594)
|..+. ++|++|+|++|+|+.+|. +..+++|++|++++|+|+..
T Consensus 269 p~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 269 PKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTCC
T ss_pred hhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCCC
Confidence 77665 788888888888888766 78888888888888888754
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=6.3e-25 Score=234.88 Aligned_cols=243 Identities=23% Similarity=0.333 Sum_probs=178.4
Q ss_pred ccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc--cCCccE
Q psy6452 309 LKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC--THTLQT 386 (594)
Q Consensus 309 L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~~~L~~ 386 (594)
.+.++++++.++.+|..+ +.+++.|+|++|+++.++...|.++++|++|+|++|.|+.+....+ .++|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~--------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~ 116 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI--------STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT 116 (440)
T ss_dssp SCEEECCSCCCSSCCSCC--------CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCE
T ss_pred CCEEEeCCCCcCcCCCCC--------CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCE
Confidence 344555555555555322 2445555555555555555555555555555555555555543333 245555
Q ss_pred EeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCC-ccccccCccccccCC
Q psy6452 387 FSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQN-TAAVMSNVSQLKYLK 465 (594)
Q Consensus 387 L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~ 465 (594)
|++++|.+..++... +..+++|+.|++++|. ...+|. ..+..+++|+.|++++ +.+....+..|..++
T Consensus 117 L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~--i~~~~~--------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 185 (440)
T 3zyj_A 117 LELFDNRLTTIPNGA-FVYLSKLKELWLRNNP--IESIPS--------YAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185 (440)
T ss_dssp EECCSSCCSSCCTTT-SCSCSSCCEEECCSCC--CCEECT--------TTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred EECCCCcCCeeCHhH-hhccccCceeeCCCCc--ccccCH--------HHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence 555555555565543 4788999999999985 223332 2345678999999998 556666777899999
Q ss_pred CcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccc-cccccCCCCCcEEEccCCCCcccC-ccccC
Q psy6452 466 NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICLEKLNISHNKVYKLP-ESFAN 543 (594)
Q Consensus 466 ~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~ 543 (594)
+|++|++++| .+..+| .+..+++|++|+|++|+|+.+ |..|..+++|+.|+|++|+|+.++ ..|..
T Consensus 186 ~L~~L~L~~n-----------~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 186 NLRYLNLAMC-----------NLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp SCCEEECTTS-----------CCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred ccCeecCCCC-----------cCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence 9999999995 455666 478899999999999999977 556999999999999999999884 48999
Q ss_pred CCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcc
Q psy6452 544 LKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMF 582 (594)
Q Consensus 544 l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ 582 (594)
+++|+.|+|++|+|+.+|.. +..+++|+.|+|++|+|..
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 99999999999999988766 7899999999999999874
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=2.2e-24 Score=216.86 Aligned_cols=219 Identities=19% Similarity=0.286 Sum_probs=123.6
Q ss_pred cEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc--cCCccEE
Q psy6452 310 KELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC--THTLQTF 387 (594)
Q Consensus 310 ~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~~~L~~L 387 (594)
++++++++.++.+|.. +++++++|++++|.++.++...|..+++|++|++++|.++++.+..+ .++|++|
T Consensus 14 ~~~~c~~~~l~~ip~~--------~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 85 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG--------IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL 85 (285)
T ss_dssp CEEECCSSCCSSCCTT--------CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred eEEEcCcCCcccCCcC--------CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEE
Confidence 4555555555555532 23455566666666665555555566666666666666665533322 2344444
Q ss_pred eCCCCC-CCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCC
Q psy6452 388 SMNHNI-GMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKN 466 (594)
Q Consensus 388 ~L~~N~-~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 466 (594)
++++|. +..++... +..+++ |++|++++|.+++..+..+..+++
T Consensus 86 ~l~~n~~l~~~~~~~-~~~l~~----------------------------------L~~L~l~~n~l~~~~~~~~~~l~~ 130 (285)
T 1ozn_A 86 DLSDNAQLRSVDPAT-FHGLGR----------------------------------LHTLHLDRCGLQELGPGLFRGLAA 130 (285)
T ss_dssp ECCSCTTCCCCCTTT-TTTCTT----------------------------------CCEEECTTSCCCCCCTTTTTTCTT
T ss_pred eCCCCCCccccCHHH-hcCCcC----------------------------------CCEEECCCCcCCEECHhHhhCCcC
Confidence 444442 33332221 234444 445555555555555555666666
Q ss_pred cceEeCCCCcCcccccccccccccCc-ccccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCccc-CccccC
Q psy6452 467 IKYLNCSNDIDHRKSQDFVNVLWELP-LSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKL-PESFAN 543 (594)
Q Consensus 467 L~~L~Ls~n~~~~~~~~~~n~~~~ip-~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~ 543 (594)
|++|++++| .+..+| ..+..+++|++|+|++|+|+.+|.. |..+++|++|+|++|+++.+ |..|..
T Consensus 131 L~~L~l~~n-----------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 199 (285)
T 1ozn_A 131 LQYLYLQDN-----------ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199 (285)
T ss_dssp CCEEECCSS-----------CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CCEEECCCC-----------cccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccC
Confidence 666666664 223333 2355566666666666666666553 66666666666666666655 446666
Q ss_pred CCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcc
Q psy6452 544 LKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMF 582 (594)
Q Consensus 544 l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ 582 (594)
+++|+.|++++|+|+.+|.. +..+++|++|++++|++..
T Consensus 200 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 66666667666666666543 6666666666666666653
No 66
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=5.3e-25 Score=224.55 Aligned_cols=229 Identities=18% Similarity=0.179 Sum_probs=180.7
Q ss_pred cCccEEeccCCcccc---CchhhhhccccccCCCcceEEcCC-CCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccC
Q psy6452 307 KVLKELDISHNNFES---MPLCLQVHFYVHIPYKHSQSDISH-NNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTH 382 (594)
Q Consensus 307 ~~L~~L~Ls~N~l~~---lp~~~~~~~~~~~~~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 382 (594)
.++++|+|++|.+++ +|..+... ++|++|++++ |.+.+..+..|.++++|++|++++|.+++.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l------~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~------- 116 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANL------PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA------- 116 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGC------TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-------
T ss_pred ceEEEEECCCCCccCCcccChhHhCC------CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-------
Confidence 567888888888874 56554322 5777777774 777644444456777777777777777642
Q ss_pred CccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccc
Q psy6452 383 TLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK 462 (594)
Q Consensus 383 ~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 462 (594)
+|..+ ..+++|+.|++++|. +.+.+|..+ ..+++|++|++++|.+++..+..+.
T Consensus 117 --------------~p~~~--~~l~~L~~L~Ls~N~-l~~~~p~~~---------~~l~~L~~L~L~~N~l~~~~p~~l~ 170 (313)
T 1ogq_A 117 --------------IPDFL--SQIKTLVTLDFSYNA-LSGTLPPSI---------SSLPNLVGITFDGNRISGAIPDSYG 170 (313)
T ss_dssp --------------CCGGG--GGCTTCCEEECCSSE-EESCCCGGG---------GGCTTCCEEECCSSCCEEECCGGGG
T ss_pred --------------CCHHH--hCCCCCCEEeCCCCc-cCCcCChHH---------hcCCCCCeEECcCCcccCcCCHHHh
Confidence 33332 567777777777763 444555433 4467889999999999988899999
Q ss_pred cCC-CcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCc-cccccccCCCCCcEEEccCCCCcccCcc
Q psy6452 463 YLK-NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVYKLPES 540 (594)
Q Consensus 463 ~l~-~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~~lp~~ 540 (594)
.+. +|++|++++| ...+.+|..+..++ |++|++++|.++ .+|..|..+++|++|+|++|+++..+..
T Consensus 171 ~l~~~L~~L~L~~N----------~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 239 (313)
T 1ogq_A 171 SFSKLFTSMTISRN----------RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp CCCTTCCEEECCSS----------EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred hhhhcCcEEECcCC----------eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence 998 9999999998 56668888898887 999999999999 5566799999999999999999976666
Q ss_pred ccCCCCCCEEECcCCCCC-ccCcccccCCCCcEEEccCCCCc-ccCH
Q psy6452 541 FANLKSLKILDVSYNKLT-MLPDGFVMLSNLTTFYAQRKYWM-FLTI 585 (594)
Q Consensus 541 ~~~l~~L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~l~-~l~~ 585 (594)
+..+++|++|+|++|+|+ .+|..+..+++|++|+|++|+++ .+|.
T Consensus 240 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 889999999999999999 88999999999999999999998 4544
No 67
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.7e-24 Score=222.29 Aligned_cols=235 Identities=20% Similarity=0.223 Sum_probs=148.4
Q ss_pred cCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC-CcCCCcCccEEeccCCccccCchhhhhcccccc
Q psy6452 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP-DFLNFKVLKELDISHNNFESMPLCLQVHFYVHI 334 (594)
Q Consensus 256 ~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~ 334 (594)
..+++++|+|++|.++. +|..+ ..+++|++|+|++|.++.+| .+..+++|++|+|++|.++.+|..+...
T Consensus 79 ~~~~l~~L~L~~n~l~~---lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l----- 149 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQ---FPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASL----- 149 (328)
T ss_dssp TSTTCCEEEEESSCCSS---CCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGC-----
T ss_pred cccceeEEEccCCCchh---cChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcC-----
Confidence 45778888888888553 56554 45888888888888888777 4777888888888888888777654321
Q ss_pred CCCcceEEcCCCCCC-CCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEE
Q psy6452 335 PYKHSQSDISHNNFE-SMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELN 413 (594)
Q Consensus 335 ~~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~ 413 (594)
++|++|++++|++. .+|.... . .++.+ .....++|++|++++|.+..+|..+ ..++
T Consensus 150 -~~L~~L~L~~n~~~~~~p~~~~-~------~~~~~-------~~~~l~~L~~L~L~~n~l~~lp~~l--~~l~------ 206 (328)
T 4fcg_A 150 -NRLRELSIRACPELTELPEPLA-S------TDASG-------EHQGLVNLQSLRLEWTGIRSLPASI--ANLQ------ 206 (328)
T ss_dssp -TTCCEEEEEEETTCCCCCSCSE-E------EC-CC-------CEEESTTCCEEEEEEECCCCCCGGG--GGCT------
T ss_pred -cCCCEEECCCCCCccccChhHh-h------ccchh-------hhccCCCCCEEECcCCCcCcchHhh--cCCC------
Confidence 35555555554332 3332221 0 00000 0000223333333333333333332 3333
Q ss_pred CcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcc
Q psy6452 414 MSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPL 493 (594)
Q Consensus 414 Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~ 493 (594)
+|++|++++|.+++. +..+..+++|++|++++| +..+.+|.
T Consensus 207 ----------------------------~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n----------~~~~~~p~ 247 (328)
T 4fcg_A 207 ----------------------------NLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGC----------TALRNYPP 247 (328)
T ss_dssp ----------------------------TCCEEEEESSCCCCC-CGGGGGCTTCCEEECTTC----------TTCCBCCC
T ss_pred ----------------------------CCCEEEccCCCCCcC-chhhccCCCCCEEECcCC----------cchhhhHH
Confidence 455555555555543 335677778888888877 66777787
Q ss_pred cccCCCCCcEEeCccccCc-cccccccCCCCCcEEEccCCCCc-ccCccccCCCCCCEEECcCCCCCccC
Q psy6452 494 SILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVY-KLPESFANLKSLKILDVSYNKLTMLP 561 (594)
Q Consensus 494 ~~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ip 561 (594)
.+..+++|++|+|++|.+. .+|..+..+++|++|+|++|++. .+|..+..+++|+.+++..|.+..++
T Consensus 248 ~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence 8888888888888887655 77777888888888888887765 67888888888888888887766553
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=7.7e-24 Score=213.45 Aligned_cols=201 Identities=19% Similarity=0.269 Sum_probs=118.7
Q ss_pred cCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccC
Q psy6452 303 FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTH 382 (594)
Q Consensus 303 ~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 382 (594)
+.++++++++++++|.++.+|..+ +++++.|++++|.++.++...|.++++|++|++++|.|+.++.....+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--------~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~ 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--------PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP 77 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--------CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCT
T ss_pred ccccCCccEEECCCCCCCcCCCCC--------CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCC
Confidence 456677777777777777777432 357777888888887777777788889999999999888776655555
Q ss_pred CccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccc
Q psy6452 383 TLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK 462 (594)
Q Consensus 383 ~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 462 (594)
+|++|++++|.+..+|..+ ..+ ++|++|++++|+++...+..|.
T Consensus 78 ~L~~L~Ls~N~l~~l~~~~--~~l----------------------------------~~L~~L~l~~N~l~~l~~~~~~ 121 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSLPLLG--QTL----------------------------------PALTVLDVSFNRLTSLPLGALR 121 (290)
T ss_dssp TCCEEECCSSCCSSCCCCT--TTC----------------------------------TTCCEEECCSSCCCCCCSSTTT
T ss_pred cCCEEECCCCcCCcCchhh--ccC----------------------------------CCCCEEECCCCcCcccCHHHHc
Confidence 6666666666665555432 222 3444444444445544445555
Q ss_pred cCCCcceEeCCCCcCcccccccccccccCcc-cccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCcccCcc
Q psy6452 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPL-SILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKLPES 540 (594)
Q Consensus 463 ~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~-~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~lp~~ 540 (594)
.+++|++|++++| .+..+|. .+..+++|+.|+|++|+|+.+|.. |..+++|++|+|++|+|+.+|..
T Consensus 122 ~l~~L~~L~L~~N-----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~ 190 (290)
T 1p9a_G 122 GLGELQELYLKGN-----------ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190 (290)
T ss_dssp TCTTCCEEECTTS-----------CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCCEEECCCC-----------CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh
Confidence 5555555555553 2222222 233455555555555555555443 34455555555555555555554
Q ss_pred ccCCCCCCEEECcCCCCC
Q psy6452 541 FANLKSLKILDVSYNKLT 558 (594)
Q Consensus 541 ~~~l~~L~~L~Ls~N~l~ 558 (594)
+..+.+|+.|+|++|.+.
T Consensus 191 ~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 191 FFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTCCCSEEECCSCCBC
T ss_pred hcccccCCeEEeCCCCcc
Confidence 444455555555555554
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=2.1e-25 Score=247.53 Aligned_cols=334 Identities=14% Similarity=0.053 Sum_probs=218.1
Q ss_pred CCCcccEEEccCCCCcccc----hHhhhcCCCCCEEECCCCCCCCcc--ccchhhhhcCCCCCEEEcCCCCCCCCC-CcC
Q psy6452 232 QYHDIFTVNLSHQDINFVQ----ESMSQKLTNLTVLDLSHNNHQDIN--FVQESMSQKLTNLIVLDLSHNKLSELP-DFL 304 (594)
Q Consensus 232 ~l~~L~~L~Ls~n~l~~l~----~~~f~~l~~L~~L~Ls~N~l~~i~--~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~ 304 (594)
++++|++|+|++|.++... ...+..+++|++|++++|.++++. .+ ...+..+++|++|++++|.+..++ .+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL-ETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHH-HHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHH-HHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 4678888888888876553 234567888888888888876322 22 234467888888888888887776 356
Q ss_pred CCcCccEEeccCCcccc-CchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCc---cc
Q psy6452 305 NFKVLKELDISHNNFES-MPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKP---RC 380 (594)
Q Consensus 305 ~l~~L~~L~Ls~N~l~~-lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~---~~ 380 (594)
.+++|++|++++..... .+... .....+.+|+.|+++++....++. .+..+++|++|++++|.++..... ..
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~ 316 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKY---MNLVFPRKLCRLGLSYMGPNEMPI-LFPFAAQIRKLDLLYALLETEDHCTLIQK 316 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSS---SCCCCCTTCCEEEETTCCTTTGGG-GGGGGGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred hhhHHHhhcccccccccchHHHH---HHhhccccccccCccccchhHHHH-HHhhcCCCcEEecCCCcCCHHHHHHHHHh
Confidence 77888888887533221 11110 112344678888888865555554 345788899999998887653321 34
Q ss_pred cCCccEEeCCCCCCCCCCchhhhcccCcccEEECcC----------CCCccCCccHHHhhhcccccccccCCCcEEEcCC
Q psy6452 381 THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS----------TDPFFEHLPIWLLNHMELKENGVFSNLISLHMQN 450 (594)
Q Consensus 381 ~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~----------n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~ 450 (594)
.++|+.|+++++ +...........+++|+.|++++ ++...+.-...+ ...+++|++|+++.
T Consensus 317 ~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l--------~~~~~~L~~L~l~~ 387 (592)
T 3ogk_B 317 CPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL--------AQGCQELEYMAVYV 387 (592)
T ss_dssp CTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH--------HHHCTTCSEEEEEE
T ss_pred CcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH--------HhhCccCeEEEeec
Confidence 568888888843 22111111235678899999984 332222111111 13467899999988
Q ss_pred ccccccCcccccc-CCCcceEeCCCCcCccccccccccccc------CcccccCCCCCcEEeCcccc--Cc-ccccc-cc
Q psy6452 451 TAAVMSNVSQLKY-LKNIKYLNCSNDIDHRKSQDFVNVLWE------LPLSILYLSSIQELHLSNVQ--LN-CIPED-IG 519 (594)
Q Consensus 451 n~l~~~~~~~~~~-l~~L~~L~Ls~n~~~~~~~~~~n~~~~------ip~~~~~l~~L~~L~Ls~N~--l~-~ip~~-~~ 519 (594)
+.+++..+..+.. +++|+.|+++++... +.++. ++..+..+++|++|++++|. ++ ..+.. ..
T Consensus 388 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~-------n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~ 460 (592)
T 3ogk_B 388 SDITNESLESIGTYLKNLCDFRLVLLDRE-------ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460 (592)
T ss_dssp SCCCHHHHHHHHHHCCSCCEEEEEECSCC-------SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH
T ss_pred CCccHHHHHHHHhhCCCCcEEEEeecCCC-------ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH
Confidence 8888777766655 888999988621000 23333 33335668889999997543 55 22233 34
Q ss_pred CCCCCcEEEccCCCCcc--cCccccCCCCCCEEECcCCCCC--ccCcccccCCCCcEEEccCCCCcccCHh
Q psy6452 520 NLICLEKLNISHNKVYK--LPESFANLKSLKILDVSYNKLT--MLPDGFVMLSNLTTFYAQRKYWMFLTIS 586 (594)
Q Consensus 520 ~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~--~ip~~l~~l~~L~~L~L~~N~l~~l~~~ 586 (594)
.+++|++|+|++|+++. ++..+..+++|++|+|++|+|+ .++..+..+++|++|+|++|+++.....
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~ 531 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQD 531 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTT
T ss_pred hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHH
Confidence 57889999999998873 4555678889999999999887 2444456788999999999988765443
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.5e-23 Score=209.68 Aligned_cols=216 Identities=19% Similarity=0.269 Sum_probs=181.3
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
..+..+..++.||....++|++|++++|+++++++ ..|.++
T Consensus 11 ~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~---------------------------------------~~~~~l 51 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGS---------------------------------------YSFFSF 51 (276)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECT---------------------------------------TTTTTC
T ss_pred eEEecCCCccccCCCCCCCccEEECCCCcccccCH---------------------------------------hHhccc
Confidence 45566778899998888899999999999998762 123457
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~~ 311 (594)
++|++|++++|+++.+++..|.++++|++|++++|.+++ +++..|..+++|++|++++|.++.++. +..+++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 128 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS---LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE---ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc---cChhhhcCCccccEEECCCCCccccCchhcccCCCCCE
Confidence 899999999999999999889999999999999999655 666778899999999999999998874 889999999
Q ss_pred EeccCCcccc--CchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCc----EEECCCCCCCCCCCccccC-Cc
Q psy6452 312 LDISHNNFES--MPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLV----KLDISHNQIKILHKPRCTH-TL 384 (594)
Q Consensus 312 L~Ls~N~l~~--lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~----~L~Ls~N~l~~l~~~~~~~-~L 384 (594)
|++++|.++. +|..+.. .++|++|++++|+++.++...|..+++|+ .|++++|.++.++...+.. +|
T Consensus 129 L~l~~n~l~~~~l~~~~~~------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L 202 (276)
T 2z62_A 129 LNVAHNLIQSFKLPEYFSN------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202 (276)
T ss_dssp EECCSSCCCCCCCCGGGGG------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCE
T ss_pred EECcCCccceecCchhhcc------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcc
Confidence 9999999997 5655432 26899999999999999888777777777 8999999999887665443 79
Q ss_pred cEEeCCCCCCCCCCchhhhcccCcccEEECcCCC
Q psy6452 385 QTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTD 418 (594)
Q Consensus 385 ~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~ 418 (594)
+.|++++|.+..+|... +..+++|+.|++++|.
T Consensus 203 ~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 203 KELALDTNQLKSVPDGI-FDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEEECCSSCCSCCCTTT-TTTCCSCCEEECCSSC
T ss_pred cEEECCCCceeecCHhH-hcccccccEEEccCCc
Confidence 99999999888888765 4678888888888864
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.8e-23 Score=209.35 Aligned_cols=204 Identities=25% Similarity=0.269 Sum_probs=156.1
Q ss_pred cCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCc
Q psy6452 228 CCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFK 307 (594)
Q Consensus 228 ~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~ 307 (594)
|.+..+++++.+++++++++.+|...+ +++++|+|++|.+++ +++..|..+++|++|+|++|.|+.++....++
T Consensus 4 C~~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~ 77 (290)
T 1p9a_G 4 CEVSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYT---FSLATLMPYTRLTQLNLDRAELTKLQVDGTLP 77 (290)
T ss_dssp SEEECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSE---EEGGGGTTCTTCCEEECTTSCCCEEECCSCCT
T ss_pred ccccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCc---cCHHHhhcCCCCCEEECCCCccCcccCCCCCC
Confidence 445778999999999999999997654 789999999999654 66777889999999999999999888778899
Q ss_pred CccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEE
Q psy6452 308 VLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTF 387 (594)
Q Consensus 308 ~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L 387 (594)
+|++|++++|+++.+|..+. ..++|+.|++++|+++.++...|.++++|++|++++|+++++++.
T Consensus 78 ~L~~L~Ls~N~l~~l~~~~~------~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~--------- 142 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSLPLLGQ------TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG--------- 142 (290)
T ss_dssp TCCEEECCSSCCSSCCCCTT------TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT---------
T ss_pred cCCEEECCCCcCCcCchhhc------cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh---------
Confidence 99999999999998886432 124677777777777777776677777777777777776654322
Q ss_pred eCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCc
Q psy6452 388 SMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNI 467 (594)
Q Consensus 388 ~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 467 (594)
.|..+++|
T Consensus 143 ------------------------------------------------------------------------~~~~l~~L 150 (290)
T 1p9a_G 143 ------------------------------------------------------------------------LLTPTPKL 150 (290)
T ss_dssp ------------------------------------------------------------------------TTTTCTTC
T ss_pred ------------------------------------------------------------------------hcccccCC
Confidence 12223333
Q ss_pred ceEeCCCCcCcccccccccccccCcc-cccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCc
Q psy6452 468 KYLNCSNDIDHRKSQDFVNVLWELPL-SILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVY 535 (594)
Q Consensus 468 ~~L~Ls~n~~~~~~~~~~n~~~~ip~-~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~ 535 (594)
+.|++++| .+..+|. .+..+++|+.|+|++|+|+.+|..+..+.+|+.|+|++|.+.
T Consensus 151 ~~L~L~~N-----------~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 151 EKLSLANN-----------NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CEEECTTS-----------CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CEEECCCC-----------cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 33333332 2233333 235578899999999999999999888899999999999987
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=2.6e-23 Score=207.99 Aligned_cols=204 Identities=22% Similarity=0.259 Sum_probs=129.9
Q ss_pred CCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc--cCCccEEeCCCCCCCCCCchhhhcccCcccEEE
Q psy6452 336 YKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC--THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELN 413 (594)
Q Consensus 336 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~ 413 (594)
.++++|++++|.++.++...|.++++|++|++++|+++.++...+ .++|++|++++|.+..++... +..+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l------- 99 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA-FSGL------- 99 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT-TTTC-------
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh-hcCC-------
Confidence 445555555555555555455555566666666665555443222 123333333333333333221 2333
Q ss_pred CcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccc-cCc
Q psy6452 414 MSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLW-ELP 492 (594)
Q Consensus 414 Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~-~ip 492 (594)
++|++|++++|.+++..+..+..+++|++|++++| ...+ .+|
T Consensus 100 ---------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----------~l~~~~l~ 142 (276)
T 2z62_A 100 ---------------------------SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN----------LIQSFKLP 142 (276)
T ss_dssp ---------------------------TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS----------CCCCCCCC
T ss_pred ---------------------------ccccEEECCCCCccccCchhcccCCCCCEEECcCC----------ccceecCc
Confidence 45555555555666655556777888888888885 2222 357
Q ss_pred ccccCCCCCcEEeCccccCccccc-cccCCCCCc----EEEccCCCCcccCccccCCCCCCEEECcCCCCCccCcc-ccc
Q psy6452 493 LSILYLSSIQELHLSNVQLNCIPE-DIGNLICLE----KLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDG-FVM 566 (594)
Q Consensus 493 ~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~----~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~ 566 (594)
..+..+++|++|+|++|+++.++. .+..+++|+ +|++++|+++.++.......+|+.|+|++|+|+.+|.. +..
T Consensus 143 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp GGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTT
T ss_pred hhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcc
Confidence 778888888888888888887754 355555555 88888888888866554555888888888888888766 678
Q ss_pred CCCCcEEEccCCCCcccC
Q psy6452 567 LSNLTTFYAQRKYWMFLT 584 (594)
Q Consensus 567 l~~L~~L~L~~N~l~~l~ 584 (594)
+++|++|++++|+|+.-.
T Consensus 223 l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 223 LTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCSCCEEECCSSCBCCCT
T ss_pred cccccEEEccCCcccccC
Confidence 888888888888888543
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=9.9e-23 Score=203.14 Aligned_cols=88 Identities=28% Similarity=0.513 Sum_probs=48.0
Q ss_pred ccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCccCcc-cccCCCCc
Q psy6452 495 ILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLT 571 (594)
Q Consensus 495 ~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~ 571 (594)
+..+++|++|+|++|.|+.+|.. |..+++|++|+|++|+++.++. .|..+++|++|+|++|+|+.+|.. +..+++|+
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 34445555555555555555443 4555555555555555555543 355555555555555555555443 55555555
Q ss_pred EEEccCCCCcc
Q psy6452 572 TFYAQRKYWMF 582 (594)
Q Consensus 572 ~L~L~~N~l~~ 582 (594)
.|+|++|+|..
T Consensus 209 ~L~l~~N~~~c 219 (270)
T 2o6q_A 209 MLQLQENPWDC 219 (270)
T ss_dssp EEECCSSCBCC
T ss_pred EEEecCCCeeC
Confidence 55555555543
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=7.1e-23 Score=204.17 Aligned_cols=193 Identities=19% Similarity=0.263 Sum_probs=152.9
Q ss_pred cEEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccC
Q psy6452 153 STRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232 (594)
Q Consensus 153 ~~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~ 232 (594)
+.+++++++++.||....+++++|+|++|+++++++ ..|.+
T Consensus 19 ~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~---------------------------------------~~~~~ 59 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPS---------------------------------------KAFHR 59 (270)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCT---------------------------------------TSSSS
T ss_pred CEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCH---------------------------------------HHhcC
Confidence 467888899999998888889999999999987651 23355
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCcc
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLK 310 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~ 310 (594)
+++|++|++++|+|+.++..+|..+++|++|++++|++++ ++...|..+++|++|++++|.++.++. |..+++|+
T Consensus 60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 136 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA---LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC---CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc---CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCC
Confidence 7889999999999999998888889999999999999655 667778889999999999999998774 77889999
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc--cCCccEEe
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC--THTLQTFS 388 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~~~L~~L~ 388 (594)
+|++++|.++.+|...+. ..++|+.|++++|.++.++...|.++++|++|++++|+++.++...+ .++|+.|+
T Consensus 137 ~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 137 YLSLGYNELQSLPKGVFD-----KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211 (270)
T ss_dssp EEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred EEECCCCcCCccCHhHcc-----CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEE
Confidence 999999999988765432 22688888888888888888888888888888888888887654332 22444444
Q ss_pred CCCC
Q psy6452 389 MNHN 392 (594)
Q Consensus 389 L~~N 392 (594)
+++|
T Consensus 212 l~~N 215 (270)
T 2o6q_A 212 LQEN 215 (270)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 4444
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=5.5e-24 Score=216.90 Aligned_cols=250 Identities=14% Similarity=0.091 Sum_probs=170.9
Q ss_pred CccEEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCc
Q psy6452 151 ALSTRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCN 230 (594)
Q Consensus 151 ~L~~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~ 230 (594)
+|+.+.+++|.+ .+|..+...|++|+|++|+++........ . .....+
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~------~-------------------------~~~~~~ 91 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRI------L-------------------------FGALRV 91 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHH------H-------------------------HHHHHH
T ss_pred CceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHH------H-------------------------HHHHHh
Confidence 466778888888 89988877799999999999653311000 0 000001
Q ss_pred cCCCcccEEEccCCCCcc-cchHhh-hcCCCCCEEECCCCCCCCccccchhhhhcC-----CCCCEEEcCCCCCCCCC--
Q psy6452 231 KQYHDIFTVNLSHQDINF-VQESMS-QKLTNLTVLDLSHNNHQDINFVQESMSQKL-----TNLIVLDLSHNKLSELP-- 301 (594)
Q Consensus 231 ~~l~~L~~L~Ls~n~l~~-l~~~~f-~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l-----~~L~~L~Ls~N~l~~lp-- 301 (594)
.++++|++|+|++|+++. ++...| ..+++|++|+|++|+++++ | ..+..+ ++|++|+|++|+++.++
T Consensus 92 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~ 167 (312)
T 1wwl_A 92 LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR---D-AWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167 (312)
T ss_dssp HTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS---S-SHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred cCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch---h-HHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence 246788888888888874 444433 7788888888888886653 3 334454 78888888888888766
Q ss_pred CcCCCcCccEEeccCCccccC---chhhhhccccccCCCcceEEcCCCCCCC---CChhhhccCCCCcEEECCCCCCCCC
Q psy6452 302 DFLNFKVLKELDISHNNFESM---PLCLQVHFYVHIPYKHSQSDISHNNFES---MPLCLQVHFCKLVKLDISHNQIKIL 375 (594)
Q Consensus 302 ~~~~l~~L~~L~Ls~N~l~~l---p~~~~~~~~~~~~~~L~~L~Ls~N~l~~---i~~~~~~~l~~L~~L~Ls~N~l~~l 375 (594)
.|..+++|++|++++|++.+. +..+. ....++|++|++++|+++. ++...+.++++|++|++++|++++.
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISALC----PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHHSC----TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHHHH----hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 477888888888888887642 22220 1223678888888888884 3445566778888888888888875
Q ss_pred CC-c--cccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCcc
Q psy6452 376 HK-P--RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTA 452 (594)
Q Consensus 376 ~~-~--~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~ 452 (594)
.+ . ...++|++|++++|.+..+|..+. ++|+.|++++|+ +.+ +|. +..+++|++|++++|+
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~-l~~-~p~----------~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNR-LDR-NPS----------PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSC-CCS-CCC----------TTTSCEEEEEECTTCT
T ss_pred cchhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCC-CCC-Chh----------HhhCCCCCEEeccCCC
Confidence 52 2 234688888888888888887652 788888888875 222 232 3456788888888888
Q ss_pred cccc
Q psy6452 453 AVMS 456 (594)
Q Consensus 453 l~~~ 456 (594)
+++.
T Consensus 308 l~~~ 311 (312)
T 1wwl_A 308 FLDS 311 (312)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 8753
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=3.1e-23 Score=202.88 Aligned_cols=203 Identities=16% Similarity=0.185 Sum_probs=144.0
Q ss_pred CcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCCCcccEEEc
Q psy6452 162 LQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNL 241 (594)
Q Consensus 162 l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L 241 (594)
++.||. ..++|++|++++|+++++++ ..|.++++|++|++
T Consensus 23 l~~ip~-~~~~l~~L~l~~n~l~~i~~---------------------------------------~~~~~l~~L~~L~l 62 (239)
T 2xwt_C 23 IQRIPS-LPPSTQTLKLIETHLRTIPS---------------------------------------HAFSNLPNISRIYV 62 (239)
T ss_dssp CSSCCC-CCTTCCEEEEESCCCSEECT---------------------------------------TTTTTCTTCCEEEE
T ss_pred ccccCC-CCCcccEEEEeCCcceEECH---------------------------------------HHccCCCCCcEEeC
Confidence 666776 55678888888888877651 12345677888888
Q ss_pred cCCC-CcccchHhhhcCCCCCEEECCC-CCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCcc---EEeccC
Q psy6452 242 SHQD-INFVQESMSQKLTNLTVLDLSH-NNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLK---ELDISH 316 (594)
Q Consensus 242 s~n~-l~~l~~~~f~~l~~L~~L~Ls~-N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~---~L~Ls~ 316 (594)
++|+ ++.+++..|.++++|++|++++ |+++. +++..|..+++|++|++++|.++.+|.|..+++|+ +|++++
T Consensus 63 ~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~---i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~ 139 (239)
T 2xwt_C 63 SIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY---IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139 (239)
T ss_dssp ECCSSCCEECTTTEESCTTCCEEEEEEETTCCE---ECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEES
T ss_pred CCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE---cCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCC
Confidence 8886 7888777777888888888887 77543 56666777888888888888888777777777777 888888
Q ss_pred C-ccccCchhhhhccccccCCCcc-eEEcCCCCCCCCChhhhccCCCCcEEECCCCC-CCCCCCccc--c-CCccEEeCC
Q psy6452 317 N-NFESMPLCLQVHFYVHIPYKHS-QSDISHNNFESMPLCLQVHFCKLVKLDISHNQ-IKILHKPRC--T-HTLQTFSMN 390 (594)
Q Consensus 317 N-~l~~lp~~~~~~~~~~~~~~L~-~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~--~-~~L~~L~L~ 390 (594)
| .++.+|...+.. ..+|+ .|++++|+++.++...|.. ++|+.|++++|+ ++.++...+ . ++|+.|+++
T Consensus 140 N~~l~~i~~~~~~~-----l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 140 NPYMTSIPVNAFQG-----LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213 (239)
T ss_dssp CTTCCEECTTTTTT-----TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECT
T ss_pred CcchhhcCcccccc-----hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECC
Confidence 8 777776553322 25677 7888888777777777755 677888888884 777665433 2 567777777
Q ss_pred CCCCCCCCchhhhcccCcccEEECcCC
Q psy6452 391 HNIGMKIPEWFWYQEFLCLKELNMSST 417 (594)
Q Consensus 391 ~N~~~~ip~~~~~~~~~~L~~L~Ls~n 417 (594)
+|.+..+|.. .+++|+.|+++++
T Consensus 214 ~N~l~~l~~~----~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 214 QTSVTALPSK----GLEHLKELIARNT 236 (239)
T ss_dssp TCCCCCCCCT----TCTTCSEEECTTC
T ss_pred CCccccCChh----HhccCceeeccCc
Confidence 7777777653 3566777777664
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1.8e-22 Score=205.28 Aligned_cols=216 Identities=18% Similarity=0.241 Sum_probs=148.9
Q ss_pred CCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEeccCCccccCchhhhhccccccCCCcc
Q psy6452 260 LTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHS 339 (594)
Q Consensus 260 L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~ 339 (594)
+..+.+..+.++++ +. +..+++|++|++++|.++.++.+..+++|++|++++|.++.++. +. ..++|+
T Consensus 21 ~~~~~l~~~~~~~~--~~---~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~------~l~~L~ 88 (308)
T 1h6u_A 21 AIKIAAGKSNVTDT--VT---QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LK------NLTKIT 88 (308)
T ss_dssp HHHHHTTCSSTTSE--EC---HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GT------TCCSCC
T ss_pred HHHHHhCCCCcCce--ec---HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-Hc------cCCCCC
Confidence 33445666775552 11 24678899999999999988888888999999999999888775 22 225677
Q ss_pred eEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCC
Q psy6452 340 QSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDP 419 (594)
Q Consensus 340 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~ 419 (594)
+|++++|.++.++ .+..+++|++|++++|++++++.. ..+++|+.|++++
T Consensus 89 ~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~l-------------------------~~l~~L~~L~l~~--- 138 (308)
T 1h6u_A 89 ELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTPL-------------------------AGLSNLQVLYLDL--- 138 (308)
T ss_dssp EEECCSCCCSCCG--GGTTCTTCCEEECTTSCCCCCGGG-------------------------TTCTTCCEEECCS---
T ss_pred EEEccCCcCCCch--hhcCCCCCCEEECCCCCCCCchhh-------------------------cCCCCCCEEECCC---
Confidence 7777777777664 345666777777777766654321 2333344444433
Q ss_pred ccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCC
Q psy6452 420 FFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLS 499 (594)
Q Consensus 420 ~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~ 499 (594)
|.+++..+ +..+++|+.|++++| .+..++. +..++
T Consensus 139 -------------------------------n~l~~~~~--l~~l~~L~~L~l~~n-----------~l~~~~~-l~~l~ 173 (308)
T 1h6u_A 139 -------------------------------NQITNISP--LAGLTNLQYLSIGNA-----------QVSDLTP-LANLS 173 (308)
T ss_dssp -------------------------------SCCCCCGG--GGGCTTCCEEECCSS-----------CCCCCGG-GTTCT
T ss_pred -------------------------------CccCcCcc--ccCCCCccEEEccCC-----------cCCCChh-hcCCC
Confidence 33333222 555666666666664 2333443 66778
Q ss_pred CCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCccCccc
Q psy6452 500 SIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGF 564 (594)
Q Consensus 500 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip~~l 564 (594)
+|+.|++++|.++.++. +..+++|++|+|++|+++.++. +..+++|+.|++++|+++..|..+
T Consensus 174 ~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 174 KLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp TCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCEEC
T ss_pred CCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCeee
Confidence 89999999999988875 7888899999999999988874 888889999999999888776553
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=9.9e-23 Score=203.39 Aligned_cols=227 Identities=19% Similarity=0.240 Sum_probs=128.7
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEe
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELD 313 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~ 313 (594)
..+..+++..+.+..+.. ...+++|+.|++++|.++.+ + .+..+++|++|++++|.++.++.+..+++|++|+
T Consensus 19 ~~l~~l~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~---~--~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV---Q--GIQYLPNVRYLALGGNKLHDISALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHTCSCTTSEEC--HHHHTTCCEEECTTSCCCCC---T--TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEE
T ss_pred HHHHHHHhcCcccccccc--cccccceeeeeeCCCCcccc---c--ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEE
Confidence 345556666666665544 34567777777777775543 1 2356677777777777777666666677777777
Q ss_pred ccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCC
Q psy6452 314 ISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNI 393 (594)
Q Consensus 314 Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~ 393 (594)
+++|.+++++...+. ..++|++|++++|+++.++...|.++++|++|++++|+++++++
T Consensus 92 L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------- 150 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFD-----KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK---------------- 150 (272)
T ss_dssp CTTSCCCCCCTTTTT-----TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------------
T ss_pred CCCCccCccChhHhc-----CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH----------------
Confidence 777776665543321 11345555555555555555544455555555555555443321
Q ss_pred CCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCC
Q psy6452 394 GMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS 473 (594)
Q Consensus 394 ~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 473 (594)
..+..+++|+.|+++
T Consensus 151 -----------------------------------------------------------------~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 151 -----------------------------------------------------------------GVFDKLTNLTELDLS 165 (272)
T ss_dssp -----------------------------------------------------------------TTTTTCTTCCEEECC
T ss_pred -----------------------------------------------------------------HHhccCccCCEEECC
Confidence 222223333333333
Q ss_pred CCcCcccccccccccccCcccccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCcccCccccCCCCCCEEEC
Q psy6452 474 NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKLPESFANLKSLKILDV 552 (594)
Q Consensus 474 ~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 552 (594)
+| +..+..+..+..+++|++|++++|+++.++.. +..+++|++|+|++|.+. +.+++|+.|++
T Consensus 166 ~n----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~ 229 (272)
T 3rfs_A 166 YN----------QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSE 229 (272)
T ss_dssp SS----------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHH
T ss_pred CC----------CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHH
Confidence 32 11111122234556677777777777766544 677777777777777654 23456777777
Q ss_pred cCCCCC-ccCcccccCCC
Q psy6452 553 SYNKLT-MLPDGFVMLSN 569 (594)
Q Consensus 553 s~N~l~-~ip~~l~~l~~ 569 (594)
+.|+++ .+|.+++.+..
T Consensus 230 ~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 230 WINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp HHHHTGGGBBCTTSCBCG
T ss_pred HHHhCCCcccCcccccCC
Confidence 777777 66766665544
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.7e-23 Score=216.31 Aligned_cols=134 Identities=20% Similarity=0.209 Sum_probs=83.8
Q ss_pred EEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccch----hhhhcCC-CCCEEEcCCCCCCCCC--CcCCC----
Q psy6452 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQE----SMSQKLT-NLIVLDLSHNKLSELP--DFLNF---- 306 (594)
Q Consensus 238 ~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~----~~~~~l~-~L~~L~Ls~N~l~~lp--~~~~l---- 306 (594)
++++++|.++...+..+...++|++|+|++|.+++ .+. ..+..++ +|++|+|++|.++... .+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~---~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYS---ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGG---SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCCh---HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 45677777777766666556668888888887544 333 4556676 7888888888777543 23332
Q ss_pred -cCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhc----c-CCCCcEEECCCCCCCC
Q psy6452 307 -KVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV----H-FCKLVKLDISHNQIKI 374 (594)
Q Consensus 307 -~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~----~-l~~L~~L~Ls~N~l~~ 374 (594)
++|++|+|++|.++..+.......+...+++|++|++++|.++..+...+. . .++|++|++++|.++.
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 778888888888776543322221223335677777777777666554432 2 2467777777777664
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3.2e-22 Score=199.72 Aligned_cols=184 Identities=22% Similarity=0.255 Sum_probs=106.4
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCcc
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLK 310 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~ 310 (594)
+++|++|++++|+++.++ .+..+++|++|++++|.+++ +++..|..+++|++|++++|+++.++. |..+++|+
T Consensus 62 l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQS---LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp CTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCC---CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCc---cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 456666666666666654 35566666666666666443 445555566666666666666665553 55666666
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCC
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMN 390 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~ 390 (594)
+|++++|.++++|...+. ..++|+.|++++|++++++...|.++++|++|++++|++++++
T Consensus 137 ~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------------- 197 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFD-----KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP-------------- 197 (272)
T ss_dssp EEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--------------
T ss_pred EEECCCCccCccCHHHhc-----cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC--------------
Confidence 666666666665543321 1245666666666666665555555566666666666555443
Q ss_pred CCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCC
Q psy6452 391 HNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKN 466 (594)
Q Consensus 391 ~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 466 (594)
... +..+++|+.|++++|. +.+. +++++.+++..|.+++..|..++.+..
T Consensus 198 --------~~~-~~~l~~L~~L~l~~N~-~~~~----------------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 198 --------DGV-FDRLTSLQYIWLHDNP-WDCT----------------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp --------TTT-TTTCTTCCEEECCSSC-BCCC----------------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred --------HHH-HhCCcCCCEEEccCCC-cccc----------------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 322 3456677777777653 2222 235566666666666666665555443
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.2e-21 Score=199.19 Aligned_cols=217 Identities=18% Similarity=0.253 Sum_probs=165.8
Q ss_pred cccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEec
Q psy6452 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314 (594)
Q Consensus 235 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~L 314 (594)
++..+.+..+.++.+.. +..+++|++|++++|.++.+ + .+..+++|++|++++|.++.++.+..+++|++|++
T Consensus 20 ~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~l---~--~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L 92 (308)
T 1h6u_A 20 NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI---E--GVQYLNNLIGLELKDNQITDLAPLKNLTKITELEL 92 (308)
T ss_dssp HHHHHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCCC---T--TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEEC
T ss_pred HHHHHHhCCCCcCceec--HHHcCCcCEEEeeCCCccCc---h--hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEc
Confidence 34445666777776544 45789999999999997764 3 25789999999999999999988999999999999
Q ss_pred cCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCC
Q psy6452 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIG 394 (594)
Q Consensus 315 s~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~ 394 (594)
++|.++.++. + ...++|++|++++|.++.++. +..+++|++|++++|.+++++..
T Consensus 93 ~~n~l~~~~~-~------~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~l---------------- 147 (308)
T 1h6u_A 93 SGNPLKNVSA-I------AGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPL---------------- 147 (308)
T ss_dssp CSCCCSCCGG-G------TTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGG----------------
T ss_pred cCCcCCCchh-h------cCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCccc----------------
Confidence 9999999863 2 233799999999999999875 67999999999999999876532
Q ss_pred CCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCC
Q psy6452 395 MKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474 (594)
Q Consensus 395 ~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 474 (594)
..+++|+.|++++| .+++..+ +..+++|+.|++++
T Consensus 148 ---------~~l~~L~~L~l~~n----------------------------------~l~~~~~--l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 148 ---------AGLTNLQYLSIGNA----------------------------------QVSDLTP--LANLSKLTTLKADD 182 (308)
T ss_dssp ---------GGCTTCCEEECCSS----------------------------------CCCCCGG--GTTCTTCCEEECCS
T ss_pred ---------cCCCCccEEEccCC----------------------------------cCCCChh--hcCCCCCCEEECCC
Confidence 23333444444433 3332222 45566666666666
Q ss_pred CcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccc
Q psy6452 475 DIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESF 541 (594)
Q Consensus 475 n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~ 541 (594)
| .+..++. +..+++|++|+|++|+++.++. +..+++|+.|+|++|.++..|..+
T Consensus 183 n-----------~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 183 N-----------KISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp S-----------CCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCEEC
T ss_pred C-----------ccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCeee
Confidence 4 2333443 6678899999999999998874 899999999999999999877644
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.8e-22 Score=205.50 Aligned_cols=84 Identities=20% Similarity=0.269 Sum_probs=60.0
Q ss_pred cCCCCCcEEeCccccCccc-cccccCC---CCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCccCcccccCCCCc
Q psy6452 496 LYLSSIQELHLSNVQLNCI-PEDIGNL---ICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLT 571 (594)
Q Consensus 496 ~~l~~L~~L~Ls~N~l~~i-p~~~~~l---~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~ 571 (594)
..+++|++|+|++|+|+.+ |..+..+ ++|++|+|++|+|+.+|..+. ++|++|+|++|+|+.+|. +..+++|+
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~ 297 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVD 297 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCS
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCcc
Confidence 3456677777777777754 5555544 577888888888877776553 678888888888887755 66778888
Q ss_pred EEEccCCCCcc
Q psy6452 572 TFYAQRKYWMF 582 (594)
Q Consensus 572 ~L~L~~N~l~~ 582 (594)
+|+|++|+|+.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 88888887764
No 83
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=4.6e-23 Score=228.62 Aligned_cols=135 Identities=10% Similarity=0.002 Sum_probs=90.4
Q ss_pred ccCCCcEEEcC-----------CccccccCccc-cccCCCcceEeCCCCcCcccccccccccccCcccccC-CCCCcEEe
Q psy6452 439 VFSNLISLHMQ-----------NTAAVMSNVSQ-LKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELH 505 (594)
Q Consensus 439 ~~~~L~~L~l~-----------~n~l~~~~~~~-~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~-l~~L~~L~ 505 (594)
.+++|++|+++ .+.++...... +..+++|++|+++.| +..+..+..+.. +++|+.|+
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~----------~l~~~~~~~l~~~~~~L~~L~ 409 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS----------DITNESLESIGTYLKNLCDFR 409 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES----------CCCHHHHHHHHHHCCSCCEEE
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC----------CccHHHHHHHHhhCCCCcEEE
Confidence 35567777777 24554433322 345677777777554 223333334443 78899999
Q ss_pred Cc----cccCccc------cccccCCCCCcEEEccCCC--Ccc-cCcc-ccCCCCCCEEECcCCCCCc--cCcccccCCC
Q psy6452 506 LS----NVQLNCI------PEDIGNLICLEKLNISHNK--VYK-LPES-FANLKSLKILDVSYNKLTM--LPDGFVMLSN 569 (594)
Q Consensus 506 Ls----~N~l~~i------p~~~~~l~~L~~L~Ls~N~--l~~-lp~~-~~~l~~L~~L~Ls~N~l~~--ip~~l~~l~~ 569 (594)
++ .|.++.. +..+.++++|++|+|++|. ++. .+.. ...+++|++|+|++|+++. ++..+..+++
T Consensus 410 l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 489 (592)
T 3ogk_B 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN 489 (592)
T ss_dssp EEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTT
T ss_pred EeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcc
Confidence 96 6677753 3336778999999997543 552 2222 3458899999999999983 5555788999
Q ss_pred CcEEEccCCCCccc
Q psy6452 570 LTTFYAQRKYWMFL 583 (594)
Q Consensus 570 L~~L~L~~N~l~~l 583 (594)
|++|+|++|+++.-
T Consensus 490 L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 490 LQKLEMRGCCFSER 503 (592)
T ss_dssp CCEEEEESCCCBHH
T ss_pred cCeeeccCCCCcHH
Confidence 99999999998643
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.3e-21 Score=191.10 Aligned_cols=176 Identities=22% Similarity=0.237 Sum_probs=151.2
Q ss_pred cEEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccC
Q psy6452 153 STRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232 (594)
Q Consensus 153 ~~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~ 232 (594)
+.++++++.++.+|..+.+++++|+|++|+++++.+ ..|.+
T Consensus 17 ~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~---------------------------------------~~~~~ 57 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSD---------------------------------------ATFRG 57 (251)
T ss_dssp TEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCT---------------------------------------TTTTT
T ss_pred eEEecCCCCccccCCCCCCCCCEEEccCCCcCccCH---------------------------------------hHhcC
Confidence 367888999999999888899999999999998762 22345
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCcc
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLK 310 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~ 310 (594)
+++|++|+|++|+|+.+++..|..+++|++|+|++|++++ +++..|..+++|++|+|++|+|+.++. |..+++|+
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 134 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS---LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK 134 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc---cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCccc
Confidence 7899999999999999999989999999999999999665 677788899999999999999998884 78899999
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCC
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 375 (594)
+|+|++|+++++|...+. ..++|+.|+|++|+++.++...|..+++|+.|++++|.++..
T Consensus 135 ~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 135 ELRLNTNQLQSIPAGAFD-----KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp EEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred EEECcCCcCCccCHHHcC-----cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999999999998864332 226899999999999999988888899999999999988753
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.5e-22 Score=210.68 Aligned_cols=264 Identities=18% Similarity=0.177 Sum_probs=170.6
Q ss_pred EEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC------CcCCCc-CccEEeccCCccccCchhhhhcccccc
Q psy6452 262 VLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP------DFLNFK-VLKELDISHNNFESMPLCLQVHFYVHI 334 (594)
Q Consensus 262 ~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp------~~~~l~-~L~~L~Ls~N~l~~lp~~~~~~~~~~~ 334 (594)
++++++|.+++ ..+.++...++|++|+|++|.++.++ .|..++ +|++|+|++|.++..............
T Consensus 2 ~~~ls~n~~~~---~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 2 NYKLTLHPGSN---PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EEECCCCTTCC---HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred ccccccccchH---HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 56889999766 34455566677999999999998765 256777 899999999999876433322222223
Q ss_pred CCCcceEEcCCCCCCCCChhhhc----cC-CCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcc-cCc
Q psy6452 335 PYKHSQSDISHNNFESMPLCLQV----HF-CKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQE-FLC 408 (594)
Q Consensus 335 ~~~L~~L~Ls~N~l~~i~~~~~~----~l-~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~-~~~ 408 (594)
+++|++|++++|.++......+. .+ ++|++|++++|.++......+.. .+.. .++
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-------------------~l~~~~~~ 139 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ-------------------AFSNLPAS 139 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH-------------------HHTTSCTT
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH-------------------HHHhCCCc
Confidence 36888888888888876655333 33 78888888888887654322110 0112 235
Q ss_pred ccEEECcCCCCccCCccHHHhhhccccccccc-CCCcEEEcCCccccccCccccc----cC-CCcceEeCCCCcCccccc
Q psy6452 409 LKELNMSSTDPFFEHLPIWLLNHMELKENGVF-SNLISLHMQNTAAVMSNVSQLK----YL-KNIKYLNCSNDIDHRKSQ 482 (594)
Q Consensus 409 L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~Ls~n~~~~~~~ 482 (594)
|+.|++++|. +.+.-+..+.... ..+ .+|++|++++|.+++..+..+. .+ ++|++|++++|.+....
T Consensus 140 L~~L~Ls~N~-l~~~~~~~l~~~l-----~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~- 212 (362)
T 3goz_A 140 ITSLNLRGND-LGIKSSDELIQIL-----AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS- 212 (362)
T ss_dssp CCEEECTTSC-GGGSCHHHHHHHH-----HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC-
T ss_pred eeEEEccCCc-CCHHHHHHHHHHH-----hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH-
Confidence 6666666653 2221111111111 112 3788888888888777765443 34 58999999986433210
Q ss_pred ccccccccCcccccC-CCCCcEEeCccccCcccc-----ccccCCCCCcEEEccCCCCc--------ccCccccCCCCCC
Q psy6452 483 DFVNVLWELPLSILY-LSSIQELHLSNVQLNCIP-----EDIGNLICLEKLNISHNKVY--------KLPESFANLKSLK 548 (594)
Q Consensus 483 ~~~n~~~~ip~~~~~-l~~L~~L~Ls~N~l~~ip-----~~~~~l~~L~~L~Ls~N~l~--------~lp~~~~~l~~L~ 548 (594)
...++..+.. .++|++|+|++|.|+..+ ..+..+++|++|+|++|.+. .++..+..+++|+
T Consensus 213 -----~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~ 287 (362)
T 3goz_A 213 -----YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287 (362)
T ss_dssp -----HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred -----HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence 1125555555 358999999999888543 33577888999999998844 3344567788888
Q ss_pred EEECcCCCCCc
Q psy6452 549 ILDVSYNKLTM 559 (594)
Q Consensus 549 ~L~Ls~N~l~~ 559 (594)
.||+++|+|..
T Consensus 288 ~LdL~~N~l~~ 298 (362)
T 3goz_A 288 LVDKNGKEIHP 298 (362)
T ss_dssp EECTTSCBCCG
T ss_pred EEecCCCcCCC
Confidence 89999998873
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=6.7e-22 Score=193.31 Aligned_cols=191 Identities=13% Similarity=0.168 Sum_probs=167.4
Q ss_pred CccEEecCCCCCcccChhh---hccCcEEEccCcc-ccccccccccCCCCCccccCCCCccccccccccccccccccccc
Q psy6452 151 ALSTRTFCDHELQSIEDDI---LVQLECLHIDNNK-AQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTEL 226 (594)
Q Consensus 151 ~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~-i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~ 226 (594)
.++.+++++|+++.++... +++|++|++++|+ ++++++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~-------------------------------------- 73 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES-------------------------------------- 73 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT--------------------------------------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH--------------------------------------
Confidence 6779999999999999865 7889999999997 887662
Q ss_pred ccCccCCCcccEEEccC-CCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCC---EEEcCCC-CCCCCC
Q psy6452 227 NCCNKQYHDIFTVNLSH-QDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLI---VLDLSHN-KLSELP 301 (594)
Q Consensus 227 ~~~~~~l~~L~~L~Ls~-n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~---~L~Ls~N-~l~~lp 301 (594)
..|.++++|++|++++ |+|+.+++..|.++++|++|++++|.+++ +|. |..+++|+ +|++++| .++.++
T Consensus 74 -~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~---lp~--~~~l~~L~~L~~L~l~~N~~l~~i~ 147 (239)
T 2xwt_C 74 -HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM---FPD--LTKVYSTDIFFILEITDNPYMTSIP 147 (239)
T ss_dssp -TTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS---CCC--CTTCCBCCSEEEEEEESCTTCCEEC
T ss_pred -hHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc---ccc--cccccccccccEEECCCCcchhhcC
Confidence 2335678999999999 99999999999999999999999999776 444 67888888 9999999 999887
Q ss_pred C--cCCCcCcc-EEeccCCccccCchhhhhccccccCCCcceEEcCCCC-CCCCChhhhccC-CCCcEEECCCCCCCCCC
Q psy6452 302 D--FLNFKVLK-ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNN-FESMPLCLQVHF-CKLVKLDISHNQIKILH 376 (594)
Q Consensus 302 ~--~~~l~~L~-~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~-l~~i~~~~~~~l-~~L~~L~Ls~N~l~~l~ 376 (594)
. |.++++|+ +|++++|+++.+|...+.. .+|+.|++++|+ ++.++...|.++ ++|+.|++++|+++.++
T Consensus 148 ~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~------~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 148 VNAFQGLCNETLTLKLYNNGFTSVQGYAFNG------TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp TTTTTTTBSSEEEEECCSCCCCEECTTTTTT------CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred cccccchhcceeEEEcCCCCCcccCHhhcCC------CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC
Confidence 4 88999999 9999999999998765422 589999999995 999999999999 99999999999999988
Q ss_pred CccccCCccEEeCCCC
Q psy6452 377 KPRCTHTLQTFSMNHN 392 (594)
Q Consensus 377 ~~~~~~~L~~L~L~~N 392 (594)
.. ..++|+.|+++++
T Consensus 222 ~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 222 SK-GLEHLKELIARNT 236 (239)
T ss_dssp CT-TCTTCSEEECTTC
T ss_pred hh-HhccCceeeccCc
Confidence 76 5669999999876
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=2.4e-22 Score=204.51 Aligned_cols=227 Identities=15% Similarity=0.142 Sum_probs=165.9
Q ss_pred hhhccCccEEecCCCCCcc-----cChhh-hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccc
Q psy6452 146 TVKTEALSTRTFCDHELQS-----IEDDI-LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAM 219 (594)
Q Consensus 146 ~~~~~~L~~l~l~~n~l~~-----ip~~~-l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 219 (594)
.++...++.+.+.+..++. +.... +++|++|++++|.+++..+...+.
T Consensus 60 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-------------------------- 113 (310)
T 4glp_A 60 TVKALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLE-------------------------- 113 (310)
T ss_dssp GGSSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSS--------------------------
T ss_pred HhhhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhh--------------------------
Confidence 3445556677777666532 33333 677999999999999765321100
Q ss_pred cccccccccCccCCCcccEEEccCCCCccc----chHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCC
Q psy6452 220 ELIDTELNCCNKQYHDIFTVNLSHQDINFV----QESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN 295 (594)
Q Consensus 220 n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l----~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N 295 (594)
..+++|++|+|++|+++.. +...+..+++|++|+|++|.+++ +++..|+.+++|++|+|++|
T Consensus 114 -----------~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~N 179 (310)
T 4glp_A 114 -----------ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA---FSCEQVRAFPALTSLDLSDN 179 (310)
T ss_dssp -----------CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC---CCTTSCCCCTTCCEEECCSC
T ss_pred -----------ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch---hhHHHhccCCCCCEEECCCC
Confidence 3467899999999998863 23445678999999999999655 56677788999999999999
Q ss_pred CCCC---CC---CcCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccC---CCCcEEE
Q psy6452 296 KLSE---LP---DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHF---CKLVKLD 366 (594)
Q Consensus 296 ~l~~---lp---~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l---~~L~~L~ 366 (594)
++.+ ++ .+..+++|++|++++|+++.++...... ....++|++|+|++|+++++.+..+..+ ++|++|+
T Consensus 180 ~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l--~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~ 257 (310)
T 4glp_A 180 PGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL--AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLN 257 (310)
T ss_dssp TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH--HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEE
T ss_pred CCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH--HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEE
Confidence 8763 32 2367889999999999998766432110 1223689999999999998733333344 6999999
Q ss_pred CCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCC
Q psy6452 367 ISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTD 418 (594)
Q Consensus 367 Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~ 418 (594)
+++|+|+.++... .++|+.|++++|.+..+|. +..+++|+.|++++|.
T Consensus 258 Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 258 LSFAGLEQVPKGL-PAKLRVLDLSSNRLNRAPQ---PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSSCCCSCCSCC-CSCCSCEECCSCCCCSCCC---TTSCCCCSCEECSSTT
T ss_pred CCCCCCCchhhhh-cCCCCEEECCCCcCCCCch---hhhCCCccEEECcCCC
Confidence 9999999876544 3799999999999988876 3678999999999985
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=3.4e-21 Score=199.52 Aligned_cols=213 Identities=17% Similarity=0.164 Sum_probs=136.0
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
..+.+++++++||..+++++++|+|++|+|+.+++ ..|.++
T Consensus 13 ~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~---------------------------------------~~f~~l 53 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQK---------------------------------------GAFSGF 53 (350)
T ss_dssp EEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECT---------------------------------------TSSTTC
T ss_pred EEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCH---------------------------------------HHHcCC
Confidence 34455777888887777788888888888887651 233456
Q ss_pred CcccEEEccCCCCc-ccchHhhhcCCCCCE-EECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCc
Q psy6452 234 HDIFTVNLSHQDIN-FVQESMSQKLTNLTV-LDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVL 309 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~-~l~~~~f~~l~~L~~-L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L 309 (594)
++|++|+|++|++. .++..+|.++++|++ +.+++|+++ .+++.+|..+++|++|++++|+++.++. +....++
T Consensus 54 ~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~---~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 130 (350)
T 4ay9_X 54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL---YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 130 (350)
T ss_dssp TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC---EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSC
T ss_pred CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc---ccCchhhhhccccccccccccccccCCchhhcccchh
Confidence 77777777777763 466667777777654 455567743 3566667777777777777777776664 3345566
Q ss_pred cEEeccC-CccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECC-CCCCCCCCCccc--cCCcc
Q psy6452 310 KELDISH-NNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDIS-HNQIKILHKPRC--THTLQ 385 (594)
Q Consensus 310 ~~L~Ls~-N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~~--~~~L~ 385 (594)
..|++.+ +.++.++...+ ...+..++.|++++|+|+.++..+| ...+|+.|+++ +|.++.++...| .++|+
T Consensus 131 ~~l~l~~~~~i~~l~~~~f----~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~ 205 (350)
T 4ay9_X 131 VLLDIQDNINIHTIERNSF----VGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPV 205 (350)
T ss_dssp EEEEEESCTTCCEECTTSS----TTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCS
T ss_pred hhhhhccccccccccccch----hhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccc
Confidence 6677654 46666664432 1223456677777777777777666 34567777775 466666665543 34677
Q ss_pred EEeCCCCCCCCCCchhhhcccCcccEEECcCC
Q psy6452 386 TFSMNHNIGMKIPEWFWYQEFLCLKELNMSST 417 (594)
Q Consensus 386 ~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n 417 (594)
.|++++|.+..+|... +.+|+.|.+.++
T Consensus 206 ~LdLs~N~l~~lp~~~----~~~L~~L~~l~~ 233 (350)
T 4ay9_X 206 ILDISRTRIHSLPSYG----LENLKKLRARST 233 (350)
T ss_dssp EEECTTSCCCCCCSSS----CTTCCEEECTTC
T ss_pred hhhcCCCCcCccChhh----hccchHhhhccC
Confidence 7777777777776533 344555554443
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=2.8e-21 Score=200.09 Aligned_cols=238 Identities=19% Similarity=0.187 Sum_probs=147.5
Q ss_pred cEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCC-CCC--CcCCCcCccE-E
Q psy6452 237 FTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS-ELP--DFLNFKVLKE-L 312 (594)
Q Consensus 237 ~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp--~~~~l~~L~~-L 312 (594)
+.+++++++++.||..++ +++++|+|++|+|+ .+++++|+++++|++|+|++|++. .+| .|.+++++++ +
T Consensus 12 ~~v~C~~~~Lt~iP~~l~---~~l~~L~Ls~N~i~---~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP---RNAIELRFVLTKLR---VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEESTTCCSCCTTCC---TTCSEEEEESCCCS---EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEecCCCCCccCcCcC---CCCCEEEccCCcCC---CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 578889999999987653 67889999999854 477888888899999999999875 355 3677777664 5
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCC-CCCCCCCCccccCCccEEeCCC
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISH-NQIKILHKPRCTHTLQTFSMNH 391 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~~L~~L~L~~ 391 (594)
.+++|+++.+++..+.. .++|++|++++|+++.++...+....++..|++.+ +++..++...+.
T Consensus 86 ~~~~N~l~~l~~~~f~~-----l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~---------- 150 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQN-----LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV---------- 150 (350)
T ss_dssp EEEETTCCEECTTSBCC-----CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSST----------
T ss_pred cccCCcccccCchhhhh-----ccccccccccccccccCCchhhcccchhhhhhhccccccccccccchh----------
Confidence 56667777765443211 13455555555555555544444444444554432 334333322111
Q ss_pred CCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEe
Q psy6452 392 NIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN 471 (594)
Q Consensus 392 N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 471 (594)
.+ ...++.|++++|+++.+.+..|. ..+|+.++
T Consensus 151 -------------~~---------------------------------~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~ 183 (350)
T 4ay9_X 151 -------------GL---------------------------------SFESVILWLNKNGIQEIHNSAFN-GTQLDELN 183 (350)
T ss_dssp -------------TS---------------------------------BSSCEEEECCSSCCCEECTTSST-TEEEEEEE
T ss_pred -------------hc---------------------------------chhhhhhccccccccCCChhhcc-ccchhHHh
Confidence 00 01344445555555544444443 34566677
Q ss_pred CCCCcCcccccccccccccCcc-cccCCCCCcEEeCccccCccccccccCCCCCcEEEccC-CCCcccCccccCCCCCCE
Q psy6452 472 CSNDIDHRKSQDFVNVLWELPL-SILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISH-NKVYKLPESFANLKSLKI 549 (594)
Q Consensus 472 Ls~n~~~~~~~~~~n~~~~ip~-~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~ 549 (594)
++++ |.++.+|. .|..+++|++|+|++|+|+.+|.. .+.+|+.|.+.+ +.++.+|. +..+++|+.
T Consensus 184 l~~~----------n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~ 250 (350)
T 4ay9_X 184 LSDN----------NNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALME 250 (350)
T ss_dssp CTTC----------TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCE
T ss_pred hccC----------CcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC-chhCcChhh
Confidence 7654 56677764 456788888888888888888764 234455554433 45677774 777888888
Q ss_pred EECcCC
Q psy6452 550 LDVSYN 555 (594)
Q Consensus 550 L~Ls~N 555 (594)
++++++
T Consensus 251 l~l~~~ 256 (350)
T 4ay9_X 251 ASLTYP 256 (350)
T ss_dssp EECSCH
T ss_pred CcCCCC
Confidence 888764
No 90
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.86 E-value=2.3e-22 Score=223.02 Aligned_cols=137 Identities=15% Similarity=0.078 Sum_probs=95.2
Q ss_pred cCCCcEEEcCCccccccCccccc-cCCCcceEeCCCCcCccccccccccccc------CcccccCCCCCcEEeCccccCc
Q psy6452 440 FSNLISLHMQNTAAVMSNVSQLK-YLKNIKYLNCSNDIDHRKSQDFVNVLWE------LPLSILYLSSIQELHLSNVQLN 512 (594)
Q Consensus 440 ~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~~~~~n~~~~------ip~~~~~l~~L~~L~Ls~N~l~ 512 (594)
+++|+.|.+..+.+++.....+. .+++|+.|+++.+..... +.++. ++..+..+++|+.|+|++ .++
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~-----~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP-----DYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC-----CTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc-----ccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 57888888888888776666654 588899999882100000 12222 222356788999999987 666
Q ss_pred -ccccccc-CCCCCcEEEccCCCCccc-Cccc-cCCCCCCEEECcCCCCCc--cCcccccCCCCcEEEccCCCCcc
Q psy6452 513 -CIPEDIG-NLICLEKLNISHNKVYKL-PESF-ANLKSLKILDVSYNKLTM--LPDGFVMLSNLTTFYAQRKYWMF 582 (594)
Q Consensus 513 -~ip~~~~-~l~~L~~L~Ls~N~l~~l-p~~~-~~l~~L~~L~Ls~N~l~~--ip~~l~~l~~L~~L~L~~N~l~~ 582 (594)
..+..+. .+++|++|+|++|.++.. ...+ ..+++|++|+|++|+++. +......+++|++|++++|+++.
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 2233344 489999999999999732 2233 678999999999999973 22335668999999999999853
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=1.5e-20 Score=205.53 Aligned_cols=202 Identities=22% Similarity=0.300 Sum_probs=128.5
Q ss_pred CCCEEEcCCCCCCCCCC-cCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcE
Q psy6452 286 NLIVLDLSHNKLSELPD-FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVK 364 (594)
Q Consensus 286 ~L~~L~Ls~N~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 364 (594)
+|+.|+|++|.|+++|. + .++|++|+|++|.|+.+| .. +++|+.|++++|.|+.+|. +.+ +|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip-~~--------l~~L~~L~Ls~N~l~~ip~--l~~--~L~~ 124 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP-EL--------PASLEYLDACDNRLSTLPE--LPA--SLKH 124 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC-CC--------CTTCCEEECCSSCCSCCCC--CCT--TCCE
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc-cc--------cCCCCEEEccCCCCCCcch--hhc--CCCE
Confidence 88899999998888885 4 378888888888888877 21 2577777777777777766 323 6777
Q ss_pred EECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCc
Q psy6452 365 LDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLI 444 (594)
Q Consensus 365 L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~ 444 (594)
|++++|.|++++. ..++|+.|++++|.+..+|.
T Consensus 125 L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--------------------------------------------- 157 (571)
T 3cvr_A 125 LDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE--------------------------------------------- 157 (571)
T ss_dssp EECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---------------------------------------------
T ss_pred EECCCCcCCCCCC--cCccccEEeCCCCccCcCCC---------------------------------------------
Confidence 7777777766543 33344444444443333322
Q ss_pred EEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCC
Q psy6452 445 SLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICL 524 (594)
Q Consensus 445 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L 524 (594)
.+++|+.|++++| .+..+|. +. ++|+.|+|++|.|+.+|. +.. +|
T Consensus 158 ------------------~l~~L~~L~Ls~N-----------~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L 202 (571)
T 3cvr_A 158 ------------------LPTSLEVLSVRNN-----------QLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RN 202 (571)
T ss_dssp ------------------CCTTCCEEECCSS-----------CCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC-----
T ss_pred ------------------cCCCcCEEECCCC-----------CCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hh
Confidence 2344555555553 2333554 33 688889999999988887 654 67
Q ss_pred -------cEEEccCCCCcccCccccCCCCCCEEECcCCCCC-ccCcccccCCCC-------cEEEccCCCCcccC
Q psy6452 525 -------EKLNISHNKVYKLPESFANLKSLKILDVSYNKLT-MLPDGFVMLSNL-------TTFYAQRKYWMFLT 584 (594)
Q Consensus 525 -------~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~l~~L-------~~L~L~~N~l~~l~ 584 (594)
+.|+|++|+|+.||..+..+++|+.|+|++|+|+ .+|..+..+... .++++++|.+..++
T Consensus 203 ~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~ 277 (571)
T 3cvr_A 203 HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277 (571)
T ss_dssp -----CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHHSCC---CEEECCC---------
T ss_pred hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhcCccccCCeeEEeeccccccccc
Confidence 8999999999988887777889999999999988 556666554332 13445555554443
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=3.4e-20 Score=182.67 Aligned_cols=175 Identities=23% Similarity=0.335 Sum_probs=107.1
Q ss_pred CccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEE
Q psy6452 308 VLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTF 387 (594)
Q Consensus 308 ~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L 387 (594)
..++++++++.++.+|.. ++.+++.|++++|.++.++...|.++++|++|++++|.++++.+..+
T Consensus 15 ~~~~l~~~~~~l~~~p~~--------~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------- 79 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG--------IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF------- 79 (251)
T ss_dssp GGTEEECTTCCCSSCCSC--------CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-------
T ss_pred CCeEEecCCCCccccCCC--------CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh-------
Confidence 456677777777766643 23566777777777777776666777777777777777765433211
Q ss_pred eCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCc
Q psy6452 388 SMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNI 467 (594)
Q Consensus 388 ~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 467 (594)
..++ +|++|++++|.++...+..|..+++|
T Consensus 80 ----------------~~l~----------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L 109 (251)
T 3m19_A 80 ----------------DDLT----------------------------------ELGTLGLANNQLASLPLGVFDHLTQL 109 (251)
T ss_dssp ----------------TTCT----------------------------------TCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ----------------ccCC----------------------------------cCCEEECCCCcccccChhHhcccCCC
Confidence 2222 34444444444444444555666666
Q ss_pred ceEeCCCCcCcccccccccccccCccc-ccCCCCCcEEeCccccCccccc-cccCCCCCcEEEccCCCCcccCc-cccCC
Q psy6452 468 KYLNCSNDIDHRKSQDFVNVLWELPLS-ILYLSSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKVYKLPE-SFANL 544 (594)
Q Consensus 468 ~~L~Ls~n~~~~~~~~~~n~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l 544 (594)
++|++++| .+..+|.. +..+++|++|+|++|+|+.+|. .|..+++|++|+|++|+|+.++. .|..+
T Consensus 110 ~~L~L~~N-----------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 178 (251)
T 3m19_A 110 DKLYLGGN-----------QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178 (251)
T ss_dssp CEEECCSS-----------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred CEEEcCCC-----------cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence 67777664 23344432 4556667777777777766655 36666677777777777666644 56666
Q ss_pred CCCCEEECcCCCCC
Q psy6452 545 KSLKILDVSYNKLT 558 (594)
Q Consensus 545 ~~L~~L~Ls~N~l~ 558 (594)
++|+.|+|++|+++
T Consensus 179 ~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 179 GKLQTITLFGNQFD 192 (251)
T ss_dssp TTCCEEECCSCCBC
T ss_pred CCCCEEEeeCCcee
Confidence 66777777777665
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.4e-21 Score=205.19 Aligned_cols=254 Identities=11% Similarity=0.096 Sum_probs=163.2
Q ss_pred CCC-CcCCCcCccEEeccCCccccCc-hhhhhccccccCCCcceEEcCCCCCCCCC----hhh------hccCCCCcEEE
Q psy6452 299 ELP-DFLNFKVLKELDISHNNFESMP-LCLQVHFYVHIPYKHSQSDISHNNFESMP----LCL------QVHFCKLVKLD 366 (594)
Q Consensus 299 ~lp-~~~~l~~L~~L~Ls~N~l~~lp-~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~----~~~------~~~l~~L~~L~ 366 (594)
.++ .+..+++|++|+|++|.++... ..+... +...++|+.|+|++|.+..+. ..+ +..+++|++|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~--l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN--IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHT--TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHH--HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 444 3556788889999988887632 111111 122357788888776655432 222 34667777777
Q ss_pred CCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhccccccccc------
Q psy6452 367 ISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVF------ 440 (594)
Q Consensus 367 Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~------ 440 (594)
|++|.++..... .++.. +..+++|+.|++++|. +.+..+..+... +..+
T Consensus 101 Ls~n~l~~~~~~-----------------~l~~~--l~~~~~L~~L~L~~n~-l~~~~~~~l~~~-----l~~l~~~~~~ 155 (386)
T 2ca6_A 101 LSDNAFGPTAQE-----------------PLIDF--LSKHTPLEHLYLHNNG-LGPQAGAKIARA-----LQELAVNKKA 155 (386)
T ss_dssp CCSCCCCTTTHH-----------------HHHHH--HHHCTTCCEEECCSSC-CHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred CCCCcCCHHHHH-----------------HHHHH--HHhCCCCCEEECcCCC-CCHHHHHHHHHH-----HHHHhhhhhc
Confidence 777777652110 02222 2456677777777664 221111111111 1111
Q ss_pred ---CCCcEEEcCCcccccc-Cc---cccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccC--
Q psy6452 441 ---SNLISLHMQNTAAVMS-NV---SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQL-- 511 (594)
Q Consensus 441 ---~~L~~L~l~~n~l~~~-~~---~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l-- 511 (594)
++|++|++++|+++.. .+ ..+..+++|+.|++++|.+.... ....+|..+..+++|+.|+|++|.|
T Consensus 156 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g-----~~~l~~~~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG-----IEHLLLEGLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp HTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHH-----HHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred ccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhH-----HHHHHHHHhhcCCCccEEECcCCCCCc
Confidence 5788888888887633 22 35667888888888886332110 0012334677788899999999998
Q ss_pred ---ccccccccCCCCCcEEEccCCCCcc-----cCcccc--CCCCCCEEECcCCCCCc-----cCccc-ccCCCCcEEEc
Q psy6452 512 ---NCIPEDIGNLICLEKLNISHNKVYK-----LPESFA--NLKSLKILDVSYNKLTM-----LPDGF-VMLSNLTTFYA 575 (594)
Q Consensus 512 ---~~ip~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~--~l~~L~~L~Ls~N~l~~-----ip~~l-~~l~~L~~L~L 575 (594)
..+|..+..+++|++|+|++|+|+. ++..+. .+++|++|+|++|+|+. +|..+ ..+++|++|++
T Consensus 231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 4677778888999999999999884 455663 38899999999999986 77776 66899999999
Q ss_pred cCCCCcccC
Q psy6452 576 QRKYWMFLT 584 (594)
Q Consensus 576 ~~N~l~~l~ 584 (594)
++|+++...
T Consensus 311 ~~N~l~~~~ 319 (386)
T 2ca6_A 311 NGNRFSEED 319 (386)
T ss_dssp TTSBSCTTS
T ss_pred cCCcCCcch
Confidence 999998777
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=2e-20 Score=204.57 Aligned_cols=209 Identities=19% Similarity=0.242 Sum_probs=153.6
Q ss_pred CCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEeccCCccccCchhhhhccccccCCCc
Q psy6452 259 NLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKH 338 (594)
Q Consensus 259 ~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L 338 (594)
+|++|+|++|.|++ +|..+ .++|++|+|++|.|+.+| ..+++|++|++++|.|+++|. +. .+|
T Consensus 60 ~L~~L~Ls~n~L~~---lp~~l---~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~--------~~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSS---LPDNL---PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LP--------ASL 122 (571)
T ss_dssp TCSEEECCSSCCSC---CCSCC---CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CC--------TTC
T ss_pred CccEEEeCCCCCCc---cCHhH---cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hh--------cCC
Confidence 99999999999766 56554 378999999999999999 668999999999999999986 32 389
Q ss_pred ceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCC
Q psy6452 339 SQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTD 418 (594)
Q Consensus 339 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~ 418 (594)
+.|++++|.|+.+|. .+++|+.|++++|.|++++. ..++|+.|++++|.+..+|. + . ++|+.|++++|
T Consensus 123 ~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l--~--~~L~~L~Ls~N- 190 (571)
T 3cvr_A 123 KHLDVDNNQLTMLPE----LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-L--P--ESLEALDVSTN- 190 (571)
T ss_dssp CEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-C--C--TTCCEEECCSS-
T ss_pred CEEECCCCcCCCCCC----cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-h--h--CCCCEEECcCC-
Confidence 999999999999987 57899999999999999876 56789999999998888877 3 1 45555555544
Q ss_pred CccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCC
Q psy6452 419 PFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYL 498 (594)
Q Consensus 419 ~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l 498 (594)
.++... . +.. +| ....
T Consensus 191 ---------------------------------~L~~lp-~-~~~--~L---------------------------~~~~ 206 (571)
T 3cvr_A 191 ---------------------------------LLESLP-A-VPV--RN---------------------------HHSE 206 (571)
T ss_dssp ---------------------------------CCSSCC-C-CC------------------------------------
T ss_pred ---------------------------------CCCchh-h-HHH--hh---------------------------hccc
Confidence 333111 1 110 00 0112
Q ss_pred CCCcEEeCccccCccccccccCCCCCcEEEccCCCCcc-cCccccCCCC-------CCEEECcCCCCCcc
Q psy6452 499 SSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYK-LPESFANLKS-------LKILDVSYNKLTML 560 (594)
Q Consensus 499 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~-------L~~L~Ls~N~l~~i 560 (594)
..|+.|+|++|.|+.||..+..+++|+.|+|++|.|+. +|..+..+.. -.++++++|++..+
T Consensus 207 ~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~~~~~~~~~l~~~~~~~~ 276 (571)
T 3cvr_A 207 ETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276 (571)
T ss_dssp -CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHHSCC---CEEECCC--------
T ss_pred ccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhcCccccCCeeEEeecccccccc
Confidence 35699999999999999998889999999999999984 4655544322 12345666665544
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=2.1e-21 Score=203.82 Aligned_cols=112 Identities=17% Similarity=0.215 Sum_probs=79.5
Q ss_pred ccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcc-----cccccc--CCCCCcEEEccCC
Q psy6452 460 QLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC-----IPEDIG--NLICLEKLNISHN 532 (594)
Q Consensus 460 ~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~--~l~~L~~L~Ls~N 532 (594)
.+..+++|++|++++|.+... -...+|..+..+++|++|+|++|.|+. ++..+. .+++|++|+|++|
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~------g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHL------GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHH------HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred HhhcCCCccEEECcCCCCCcH------HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 566777788888887622110 025567777788899999999999883 466663 4899999999999
Q ss_pred CCcc-----cCccc-cCCCCCCEEECcCCCCCccC---cc-cccCCCCcEEEccC
Q psy6452 533 KVYK-----LPESF-ANLKSLKILDVSYNKLTMLP---DG-FVMLSNLTTFYAQR 577 (594)
Q Consensus 533 ~l~~-----lp~~~-~~l~~L~~L~Ls~N~l~~ip---~~-l~~l~~L~~L~L~~ 577 (594)
.|+. +|..+ ..+++|++|+|++|+++... .. ...+++++.+.+..
T Consensus 285 ~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 285 EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 9996 77766 66899999999999999543 22 23445555555544
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=3.1e-19 Score=179.81 Aligned_cols=189 Identities=17% Similarity=0.234 Sum_probs=139.0
Q ss_pred EEecCCCCCcccChhh-hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccC
Q psy6452 154 TRTFCDHELQSIEDDI-LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~-l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~ 232 (594)
.+.+..+.++.+.... +++|++|++++|.++.++ . +..
T Consensus 28 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~---------~--------------------------------~~~ 66 (291)
T 1h6t_A 28 KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ---------G--------------------------------IQY 66 (291)
T ss_dssp HHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCT---------T--------------------------------GGG
T ss_pred HHHhcCCCcccccchhhcCcccEEEccCCCcccCh---------h--------------------------------Hhc
Confidence 3345566666554444 888888888888887654 1 123
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEE
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKEL 312 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L 312 (594)
+++|++|+|++|+++.+++ +..+++|++|++++|.++++ +. +..+++|++|++++|.++.++.+..+++|++|
T Consensus 67 l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~---~~--l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L 139 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL---SS--LKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG---GG--GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEE
T ss_pred CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC---hh--hccCCCCCEEECCCCcCCCChhhcCCCCCCEE
Confidence 6788888888888888877 77888888888888887663 32 56888888888888888888888888888888
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCC
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN 392 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N 392 (594)
++++|++++++ .+ ...++|+.|++++|.+++++. +..+++|+.|++++|.+++++.....++|+.|++++|
T Consensus 140 ~l~~n~l~~~~-~l------~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 140 YLGNNKITDIT-VL------SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp ECCSSCCCCCG-GG------GGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEE
T ss_pred EccCCcCCcch-hh------ccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCC
Confidence 88888888773 22 223678888888888887776 5678888888888888887765455556777777776
Q ss_pred CCCCCCc
Q psy6452 393 IGMKIPE 399 (594)
Q Consensus 393 ~~~~ip~ 399 (594)
.+...|.
T Consensus 211 ~i~~~~~ 217 (291)
T 1h6t_A 211 ECLNKPI 217 (291)
T ss_dssp EEECCCE
T ss_pred cccCCcc
Confidence 6555444
No 97
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=1.2e-21 Score=217.29 Aligned_cols=386 Identities=12% Similarity=0.026 Sum_probs=218.7
Q ss_pred ccCccEEecCCCCCcccChhh----hccCcEEEccCc-cccccccccccCCCCCccccCCCCcccccccccccccccccc
Q psy6452 149 TEALSTRTFCDHELQSIEDDI----LVQLECLHIDNN-KAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELID 223 (594)
Q Consensus 149 ~~~L~~l~l~~n~l~~ip~~~----l~~L~~L~Ls~N-~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~ 223 (594)
..+|+.++++++.++...... +++|++|+|++| .++..........++.++..++ +.+.+.
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L--------------~~~~i~ 169 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL--------------RESDVD 169 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEEC--------------TTCEEE
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeC--------------cCCccC
Confidence 446777888777665433222 467888888877 4443211111111111111111 111111
Q ss_pred c----ccccCccCCCcccEEEccCCCCcccchH----hhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCC
Q psy6452 224 T----ELNCCNKQYHDIFTVNLSHQDINFVQES----MSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN 295 (594)
Q Consensus 224 ~----~~~~~~~~l~~L~~L~Ls~n~l~~l~~~----~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N 295 (594)
. .+......+++|++|++++|. ..+... .+..+++|++|++++|. .+..++ ..+..+++|++|+++.+
T Consensus 170 ~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~--~~~~l~-~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 170 DVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAV--PLEKLA-TLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTS--CHHHHH-HHHHHCTTCSEEECSBC
T ss_pred CcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCC--cHHHHH-HHHhcCCcceEcccccc
Confidence 1 111222345677777777776 222222 22445777777777762 133333 34456777777776554
Q ss_pred CC-------CCCC-CcCCCcCccEE-eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCC-ChhhhccCCCCcEE
Q psy6452 296 KL-------SELP-DFLNFKVLKEL-DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESM-PLCLQVHFCKLVKL 365 (594)
Q Consensus 296 ~l-------~~lp-~~~~l~~L~~L-~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L 365 (594)
.. ..++ .+.++++|+.| .+.+.....++.... ..++|++|++++|.++.. ....+..+++|+.|
T Consensus 246 ~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~------~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L 319 (594)
T 2p1m_B 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS------VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRL 319 (594)
T ss_dssp CCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH------HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEE
T ss_pred cCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHH------hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEE
Confidence 32 1222 35566677776 344433333433221 226899999999986632 22334578899999
Q ss_pred ECCCCCCCCCCCc---cccCCccEEeCCC---------CCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcc
Q psy6452 366 DISHNQIKILHKP---RCTHTLQTFSMNH---------NIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHME 433 (594)
Q Consensus 366 ~Ls~N~l~~l~~~---~~~~~L~~L~L~~---------N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~ 433 (594)
++++| ++..... ...++|+.|++.+ +.++..........+++|+.|.++.++ +.+..+..+.
T Consensus 320 ~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~-l~~~~~~~l~---- 393 (594)
T 2p1m_B 320 WVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ-MTNAALITIA---- 393 (594)
T ss_dssp EEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC-CCHHHHHHHH----
T ss_pred eCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC-cCHHHHHHHH----
Confidence 99988 4321111 1246889998833 233222111112357889999776653 3332222221
Q ss_pred cccccccCCCcEEEcC--C----cccccc-----CccccccCCCcceEeCCCCcCcccccccccccccCcccccC-CCCC
Q psy6452 434 LKENGVFSNLISLHMQ--N----TAAVMS-----NVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSI 501 (594)
Q Consensus 434 ~~~~~~~~~L~~L~l~--~----n~l~~~-----~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~-l~~L 501 (594)
..+++|+.|+++ + +.++.. .+..+..+++|+.|+++++ .....+..+.. +++|
T Consensus 394 ----~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~-----------l~~~~~~~l~~~~~~L 458 (594)
T 2p1m_B 394 ----RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-----------LTDKVFEYIGTYAKKM 458 (594)
T ss_dssp ----HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSS-----------CCHHHHHHHHHHCTTC
T ss_pred ----hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCc-----------ccHHHHHHHHHhchhc
Confidence 235789999998 3 455522 1223677899999999773 22222233333 7899
Q ss_pred cEEeCccccCccc-ccc-ccCCCCCcEEEccCCCCccc--CccccCCCCCCEEECcCCCCCc-cCccc-ccCCCCcEEEc
Q psy6452 502 QELHLSNVQLNCI-PED-IGNLICLEKLNISHNKVYKL--PESFANLKSLKILDVSYNKLTM-LPDGF-VMLSNLTTFYA 575 (594)
Q Consensus 502 ~~L~Ls~N~l~~i-p~~-~~~l~~L~~L~Ls~N~l~~l--p~~~~~l~~L~~L~Ls~N~l~~-ip~~l-~~l~~L~~L~L 575 (594)
+.|+|++|.++.. +.. ...+++|++|+|++|.++.. ......+++|++|++++|+++. -...+ ..+++|+...+
T Consensus 459 ~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~ 538 (594)
T 2p1m_B 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVI 538 (594)
T ss_dssp CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEE
T ss_pred cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 9999999999732 223 36789999999999999732 2344568899999999999962 12223 56788877777
Q ss_pred cCCC
Q psy6452 576 QRKY 579 (594)
Q Consensus 576 ~~N~ 579 (594)
..+.
T Consensus 539 ~~~~ 542 (594)
T 2p1m_B 539 DERG 542 (594)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 6653
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.4e-19 Score=188.13 Aligned_cols=177 Identities=21% Similarity=0.271 Sum_probs=150.3
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCcc-C
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNK-Q 232 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~-~ 232 (594)
.+++++++++.||..+...+++|+|++|+|+++++. .|. +
T Consensus 22 ~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~---------------------------------------~~~~~ 62 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE---------------------------------------WTPTR 62 (361)
T ss_dssp EEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTT---------------------------------------SSSSC
T ss_pred EEEeCCCCcCccCccCCCCCCEEECCCCCCCccChh---------------------------------------hhhhc
Confidence 577888999999998888999999999999987621 123 5
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCcc
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLK 310 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~ 310 (594)
+++|++|+|++|+|+.+++..|.++++|++|+|++|+|+. +++..|..+++|++|+|++|+|+.++ .|.++++|+
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 139 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT---LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc---CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCC
Confidence 7899999999999999999999999999999999999654 67788899999999999999999775 588999999
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCC--CcEEECCCCCCCC
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCK--LVKLDISHNQIKI 374 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~--L~~L~Ls~N~l~~ 374 (594)
+|+|++|+|+.+|..++... ...++|+.|+|++|+|+.++...|..++. ++.|+|++|.+.-
T Consensus 140 ~L~L~~N~l~~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 140 KLYLSQNQISRFPVELIKDG--NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp EEECCSSCCCSCCGGGTC------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred EEECCCCcCCeeCHHHhcCc--ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 99999999999987654210 22368999999999999999888888876 4889999998763
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=3e-19 Score=179.92 Aligned_cols=171 Identities=19% Similarity=0.227 Sum_probs=92.3
Q ss_pred CCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccc
Q psy6452 360 CKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGV 439 (594)
Q Consensus 360 ~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~ 439 (594)
++|+.|++++|.++.++.....++|+.|++++|.+..++. +..+++|+.|++++|. ...+| .+..
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~--l~~~~----------~l~~ 110 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENK--VKDLS----------SLKD 110 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC--CCCGG----------GGTT
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCc--CCCCh----------hhcc
Confidence 3444444444444433332233334444444443333333 2445555555555543 11111 1233
Q ss_pred cCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcccccccc
Q psy6452 440 FSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIG 519 (594)
Q Consensus 440 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~ 519 (594)
+++|++|++++|.+++. ..+..+++|+.|++++| .+..+ ..+..+++|+.|++++|.|+.++. +.
T Consensus 111 l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n-----------~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~ 175 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNN-----------KITDI-TVLSRLTKLDTLSLEDNQISDIVP-LA 175 (291)
T ss_dssp CTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSS-----------CCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GT
T ss_pred CCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCC-----------cCCcc-hhhccCCCCCEEEccCCccccchh-hc
Confidence 45566666666666553 34666677777777764 22233 345566677777777777766655 66
Q ss_pred CCCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCccC
Q psy6452 520 NLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLP 561 (594)
Q Consensus 520 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip 561 (594)
.+++|++|+|++|+|+.++. +..+++|+.|++++|+++..|
T Consensus 176 ~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp TCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred CCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCc
Confidence 66777777777777766653 666667777777777666543
No 100
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=7.7e-20 Score=187.83 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=37.6
Q ss_pred CCCCEEEcCCCCCCCCC-CcCCCcCccEEeccCCcccc--CchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCC
Q psy6452 285 TNLIVLDLSHNKLSELP-DFLNFKVLKELDISHNNFES--MPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCK 361 (594)
Q Consensus 285 ~~L~~L~Ls~N~l~~lp-~~~~l~~L~~L~Ls~N~l~~--lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~ 361 (594)
++++.|++++|.+...+ .+..+++|++|++++|.++. ++..+. ..++|++|++++|.++......+..+++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~------~~~~L~~L~L~~~~l~~~~~~~l~~~~~ 143 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS------QCSKLQNLSLEGLRLSDPIVNTLAKNSN 143 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT------TBCCCSEEECTTCBCCHHHHHHHTTCTT
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHh------hCCCCCEEeCcCcccCHHHHHHHhcCCC
Confidence 44444444444444222 33445555555555555442 222111 1134444444444444322333345666
Q ss_pred CcEEECCCC-CCC
Q psy6452 362 LVKLDISHN-QIK 373 (594)
Q Consensus 362 L~~L~Ls~N-~l~ 373 (594)
|++|++++| .++
T Consensus 144 L~~L~L~~~~~l~ 156 (336)
T 2ast_B 144 LVRLNLSGCSGFS 156 (336)
T ss_dssp CSEEECTTCBSCC
T ss_pred CCEEECCCCCCCC
Confidence 666666666 444
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=1.3e-18 Score=192.26 Aligned_cols=189 Identities=17% Similarity=0.231 Sum_probs=121.6
Q ss_pred EEecCCCCCcccChhh-hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccC
Q psy6452 154 TRTFCDHELQSIEDDI-LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~-l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~ 232 (594)
.+.+.++.+..+.... +++|+.|++++|.+..++ . +..
T Consensus 25 ~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~---------~--------------------------------l~~ 63 (605)
T 1m9s_A 25 KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ---------G--------------------------------IQY 63 (605)
T ss_dssp HHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT---------T--------------------------------GGG
T ss_pred HHhccCCCcccccchhcCCCCCEEECcCCCCCCCh---------H--------------------------------Hcc
Confidence 3444555555544443 677777777777766543 1 123
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEE
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKEL 312 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L 312 (594)
+++|+.|+|++|+|+.+++ +..+++|++|+|++|.|+++ + .+..+++|++|+|++|.++.++.+..+++|+.|
T Consensus 64 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l---~--~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L 136 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL---S--SLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 136 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC---T--TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEE
T ss_pred CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC---h--hhccCCCCCEEEecCCCCCCCccccCCCccCEE
Confidence 5677777777777777666 66777777777777776553 2 245677777777777777777667777777777
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCC
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN 392 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N 392 (594)
+|++|.++.++ .+ ...++|+.|+|++|.++.+++ +..+++|+.|+|++|+|++++....+++|+.|++++|
T Consensus 137 ~Ls~N~l~~l~-~l------~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 137 YLGNNKITDIT-VL------SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp ECCSSCCCCCG-GG------GSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSE
T ss_pred ECCCCccCCch-hh------cccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCC
Confidence 77777777663 21 222567777777777776655 5567777777777777776654445556777777776
Q ss_pred CCCCCCc
Q psy6452 393 IGMKIPE 399 (594)
Q Consensus 393 ~~~~ip~ 399 (594)
.+...|.
T Consensus 208 ~l~~~p~ 214 (605)
T 1m9s_A 208 ECLNKPI 214 (605)
T ss_dssp EEECCCC
T ss_pred cCcCCcc
Confidence 5555544
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=8.1e-19 Score=167.50 Aligned_cols=130 Identities=27% Similarity=0.348 Sum_probs=85.2
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
.++.++++++.+|...+++|++|++++|+++++++ ..|..+
T Consensus 11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~---------------------------------------~~~~~l 51 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPN---------------------------------------GVFDEL 51 (208)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCT---------------------------------------TTTTTC
T ss_pred EEEecCCCccCCCCCCCCCCcEEEcCCCccCcCCh---------------------------------------hhhccc
Confidence 45556667777776667777777777777775541 112345
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~~ 311 (594)
++|++|++++|+|+.+++..|..+++|++|++++|++++ ++...|..+++|++|++++|+++.++. |..+++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 128 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS---LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD 128 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc---cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCE
Confidence 667777777777777776666677777777777777543 455556667777777777777776653 556666666
Q ss_pred EeccCCccccCchh
Q psy6452 312 LDISHNNFESMPLC 325 (594)
Q Consensus 312 L~Ls~N~l~~lp~~ 325 (594)
|++++|.+++++..
T Consensus 129 L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 129 LRLYQNQLKSVPDG 142 (208)
T ss_dssp EECCSSCCSCCCTT
T ss_pred EECCCCccceeCHH
Confidence 66666666665543
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=3.9e-18 Score=165.44 Aligned_cols=150 Identities=19% Similarity=0.217 Sum_probs=82.3
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
.++.++++++.||..+.++|++|+|++|+|+++.+ ..|..+
T Consensus 23 ~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~---------------------------------------~~~~~l 63 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEP---------------------------------------GVFDSL 63 (229)
T ss_dssp EEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCT---------------------------------------TTTTTC
T ss_pred EeEccCCCcCccCCCCCCCCCEEEcCCCccCccCH---------------------------------------HHhhCc
Confidence 44555556666665555566666666666655431 112234
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC-CcCCCcCccEE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP-DFLNFKVLKEL 312 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~l~~L~~L 312 (594)
++|++|+|++|+|+.++...|..+++|++|+|++|+|++ +++..|..+++|++|+|++|+|+.+| .+..+++
T Consensus 64 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~---l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~---- 136 (229)
T 3e6j_A 64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV---LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTH---- 136 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTT----
T ss_pred cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc---cChhHhCcchhhCeEeccCCcccccCcccccCCC----
Confidence 455555555555555555555555555555555555333 33444445555555555555555444 3444444
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCC
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 374 (594)
|+.|+|++|+|+.++...|..+++|+.|++++|.+..
T Consensus 137 -------------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 137 -------------------------LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp -------------------------CSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred -------------------------CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 4555555555555555555677788888888888764
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=3.7e-18 Score=162.91 Aligned_cols=131 Identities=26% Similarity=0.310 Sum_probs=98.5
Q ss_pred ccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCccEEe
Q psy6452 236 IFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELD 313 (594)
Q Consensus 236 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~~L~ 313 (594)
-+.++++++.++.++... .++|++|++++|++++ +++..|..+++|++|++++|+++.++. |..+++|++|+
T Consensus 9 ~~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI---PAQTTYLDLETNSLKS---LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp TTEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEecCCCccCCCCCC---CCCCcEEEcCCCccCc---CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence 357788888888887643 4678888888888654 566677788888888888888887774 67888888888
Q ss_pred ccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCC
Q psy6452 314 ISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHK 377 (594)
Q Consensus 314 Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 377 (594)
+++|.++.+|...+. ..++|++|++++|+++.++...|.++++|++|++++|++++++.
T Consensus 83 Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFD-----KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp CCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCCCcCCccCHhHhc-----CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence 888888887754422 22577788888888877777777777788888888887776543
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=4.8e-18 Score=163.78 Aligned_cols=150 Identities=17% Similarity=0.222 Sum_probs=103.5
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
.+++++++++.||..+.++|++|+|++|+|+++++ ..|..+
T Consensus 15 ~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~---------------------------------------~~~~~l 55 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPP---------------------------------------GAFSPY 55 (220)
T ss_dssp EEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECT---------------------------------------TSSTTC
T ss_pred EEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCH---------------------------------------hHhhCC
Confidence 45666777888887777778888888888776551 123446
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~ 311 (594)
++|++|+|++|+|+.+.+..|.++++|++|+|++|+|+. ++..+|..+++|++|+|++|+|+.++ .|..+++|++
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~---l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 132 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE---LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc---cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence 677777777777777777777777777777777777543 56666677777777777777777664 3666666666
Q ss_pred EeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCC
Q psy6452 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374 (594)
Q Consensus 312 L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 374 (594)
|+|++|.|+.++ ...|..+++|+.|++++|.+..
T Consensus 133 L~L~~N~l~~~~-----------------------------~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 133 LSLYDNKLQTIA-----------------------------KGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp EECCSSCCSCCC-----------------------------TTTTTTCTTCCEEECCSSCEEC
T ss_pred EECCCCcCCEEC-----------------------------HHHHhCCCCCCEEEeCCCCcCC
Confidence 666666666554 3344566777777777777654
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=3.5e-18 Score=188.71 Aligned_cols=168 Identities=25% Similarity=0.262 Sum_probs=145.9
Q ss_pred CCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccE
Q psy6452 232 QYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKE 311 (594)
Q Consensus 232 ~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~ 311 (594)
.+++|+.|++++|.|..++. +..+++|+.|+|++|.|+++ ++ +..+++|+.|+|++|.++.++.+..+++|++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~---~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDI---KP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCC---GG--GGGCTTCCEEECCSSCCCCCTTSTTCTTCCE
T ss_pred cCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCC---hh--hccCCCCCEEECcCCCCCCChhhccCCCCCE
Confidence 46789999999999999975 78999999999999997774 33 6799999999999999999999999999999
Q ss_pred EeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCC
Q psy6452 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNH 391 (594)
Q Consensus 312 L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~ 391 (594)
|+|++|.++.++. + ...++|+.|+|++|.++.+ ..+..+++|+.|+|++|.|+++.+...+++|+.|+|++
T Consensus 114 L~Ls~N~l~~l~~-l------~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 114 LSLEHNGISDING-L------VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSK 184 (605)
T ss_dssp EECTTSCCCCCGG-G------GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred EEecCCCCCCCcc-c------cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcC
Confidence 9999999998763 2 2336899999999999998 45679999999999999999987766677999999999
Q ss_pred CCCCCCCchhhhcccCcccEEECcCCC
Q psy6452 392 NIGMKIPEWFWYQEFLCLKELNMSSTD 418 (594)
Q Consensus 392 N~~~~ip~~~~~~~~~~L~~L~Ls~n~ 418 (594)
|.+..++. +..+++|+.|++++|+
T Consensus 185 N~i~~l~~---l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 185 NHISDLRA---LAGLKNLDVLELFSQE 208 (605)
T ss_dssp SCCCBCGG---GTTCTTCSEEECCSEE
T ss_pred CCCCCChH---HccCCCCCEEEccCCc
Confidence 98888864 4678889999998875
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=2.4e-18 Score=170.60 Aligned_cols=125 Identities=22% Similarity=0.279 Sum_probs=61.9
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEE
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKEL 312 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L 312 (594)
+++|++|+|++|+|+.+++ |..+++|++|++++|+++++. .. .. ++|++|+|++|+++.++.+..+++|++|
T Consensus 62 l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~---~~--~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L 133 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLN---GI--PS-ACLSRLFLDNNELRDTDSLIHLKNLEIL 133 (263)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCT---TC--CC-SSCCEEECCSSCCSBSGGGTTCTTCCEE
T ss_pred CCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcC---cc--cc-CcccEEEccCCccCCChhhcCcccccEE
Confidence 3455555555555555554 455555555555555544422 11 11 5555555555555555555555555555
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCC
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 374 (594)
++++|++++++ .+ ...++|+.|++++|+++++ ..+..+++|+.|++++|.++.
T Consensus 134 ~Ls~N~i~~~~-~l------~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 134 SIRNNKLKSIV-ML------GFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp ECTTSCCCBCG-GG------GGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred ECCCCcCCCCh-HH------ccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 55555555543 11 1113455555555555444 223344455555555554443
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=2.6e-18 Score=170.39 Aligned_cols=178 Identities=20% Similarity=0.220 Sum_probs=149.8
Q ss_pred ChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCCCcccEEEccCCC
Q psy6452 166 EDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQD 245 (594)
Q Consensus 166 p~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~ 245 (594)
|...+.+++.+++++|.++++.. +..+++|++|++++|+
T Consensus 14 pd~~l~~l~~l~l~~~~i~~~~~-----------------------------------------~~~l~~L~~L~l~~n~ 52 (263)
T 1xeu_A 14 PDPGLANAVKQNLGKQSVTDLVS-----------------------------------------QKELSGVQNFNGDNSN 52 (263)
T ss_dssp CSHHHHHHHHHHHTCSCTTSEEC-----------------------------------------HHHHTTCSEEECTTSC
T ss_pred CCHHHHHHHHHHhcCCCcccccc-----------------------------------------hhhcCcCcEEECcCCC
Confidence 33337778888899888887641 1346889999999999
Q ss_pred CcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEeccCCccccCchh
Q psy6452 246 INFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLC 325 (594)
Q Consensus 246 l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~ 325 (594)
|+.++ .+..+++|++|+|++|+++++ ++ +..+++|++|+|++|+++.+|.+.. ++|++|++++|++++++.
T Consensus 53 i~~l~--~l~~l~~L~~L~L~~N~i~~~---~~--l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~- 123 (263)
T 1xeu_A 53 IQSLA--GMQFFTNLKELHLSHNQISDL---SP--LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDS- 123 (263)
T ss_dssp CCCCT--TGGGCTTCCEEECCSSCCCCC---GG--GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSGG-
T ss_pred cccch--HHhhCCCCCEEECCCCccCCC---hh--hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCChh-
Confidence 99988 478999999999999997764 44 6899999999999999999998777 999999999999999863
Q ss_pred hhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchh
Q psy6452 326 LQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWF 401 (594)
Q Consensus 326 ~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~ 401 (594)
+ ...++|+.|++++|++++++ .+..+++|+.|++++|+++++......++|+.|++++|.+...|...
T Consensus 124 l------~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~~~~~~ 191 (263)
T 1xeu_A 124 L------IHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKY 191 (263)
T ss_dssp G------TTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEECCCEEC
T ss_pred h------cCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcccCCcccc
Confidence 2 23379999999999999986 46789999999999999999866666789999999999887776543
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.9e-17 Score=160.59 Aligned_cols=152 Identities=21% Similarity=0.208 Sum_probs=117.1
Q ss_pred cccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCccEE
Q psy6452 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKEL 312 (594)
Q Consensus 235 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~~L 312 (594)
..+.+++++++++.+|... .++|++|+|++|.|++ +++..|..+++|++|+|++|+|+.+|. |..+++|++|
T Consensus 20 s~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITK---LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred eCCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCc---cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEE
Confidence 4567888888888887644 3778888888888655 445666788888888888888887773 6778888888
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc--cCCccEEeCC
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC--THTLQTFSMN 390 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~~~L~~L~L~ 390 (594)
+|++|+|+.++...+.. .++|+.|++++|+|+.+|..+ ..+++|++|+|++|+|+.++...+ .++|+.|+++
T Consensus 94 ~Ls~N~l~~l~~~~~~~-----l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 94 DLGTNQLTVLPSAVFDR-----LVHLKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp ECCSSCCCCCCTTTTTT-----CTTCCEEECCSSCCCSCCTTG-GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ECCCCcCCccChhHhCc-----chhhCeEeccCCcccccCccc-ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 88888888877654322 267888888888888887665 589999999999999999886544 4699999999
Q ss_pred CCCCCCCC
Q psy6452 391 HNIGMKIP 398 (594)
Q Consensus 391 ~N~~~~ip 398 (594)
+|.+..-.
T Consensus 168 ~N~~~c~c 175 (229)
T 3e6j_A 168 GNPWDCEC 175 (229)
T ss_dssp TSCBCTTB
T ss_pred CCCccCCc
Confidence 99766443
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=1.5e-17 Score=160.20 Aligned_cols=152 Identities=17% Similarity=0.210 Sum_probs=120.2
Q ss_pred ccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccEEe
Q psy6452 236 IFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKELD 313 (594)
Q Consensus 236 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~L~ 313 (594)
-+.+++++++++.+|.... ++|++|++++|+|++ +++..|..+++|++|+|++|+|+.++ .|.++++|++|+
T Consensus 13 ~~~v~c~~~~l~~iP~~l~---~~l~~L~l~~n~i~~---i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP---ETITEIRLEQNTIKV---IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC---TTCCEEECCSSCCCE---ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred CCEEEcCCCCcCcCCCccC---cCCCEEECCCCcCCC---cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence 3578888888888876543 678888888888544 56667778888888888888888663 577888888888
Q ss_pred ccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc--cCCccEEeCCC
Q psy6452 314 ISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC--THTLQTFSMNH 391 (594)
Q Consensus 314 Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~~~L~~L~L~~ 391 (594)
|++|.|+.+|...+.. ..+|+.|+|++|+++.+++..|.++++|++|+|++|+|++++...+ .++|+.|++++
T Consensus 87 Ls~N~l~~l~~~~f~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 87 LYGNKITELPKSLFEG-----LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCSSCCCCCCTTTTTT-----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCCccCHhHccC-----CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 8888888887765432 2688888888888888888888899999999999999999987644 46899999999
Q ss_pred CCCCCCC
Q psy6452 392 NIGMKIP 398 (594)
Q Consensus 392 N~~~~ip 398 (594)
|.+....
T Consensus 162 N~~~c~c 168 (220)
T 2v9t_B 162 NPFICDC 168 (220)
T ss_dssp SCEECSG
T ss_pred CCcCCCC
Confidence 9765433
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=160.43 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=108.9
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
.+++++|.++.||..+...+++|+|++|+|+++.+. ..|..+
T Consensus 15 ~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~--------------------------------------~~~~~l 56 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEAT--------------------------------------GIFKKL 56 (220)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCC--------------------------------------CCGGGC
T ss_pred EeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCch--------------------------------------hhhccC
Confidence 567778888888877777788888888888876411 112446
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~ 311 (594)
++|++|+|++|+|+.+++..|.++++|++|+|++|++++ +++..|..+++|++|+|++|+|+.++ .|..+++|++
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 133 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN---VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC---CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc---cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence 778888888888888887777888888888888888554 55666777888888888888877664 3667777777
Q ss_pred EeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCC
Q psy6452 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374 (594)
Q Consensus 312 L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 374 (594)
|+|++|++++++ +..|..+++|+.|++++|.+..
T Consensus 134 L~L~~N~l~~~~-----------------------------~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 134 LSLYDNQITTVA-----------------------------PGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp EECTTSCCCCBC-----------------------------TTTTTTCTTCCEEECCSCCEEC
T ss_pred EECCCCcCCEEC-----------------------------HHHhcCCCCCCEEEecCcCCcC
Confidence 777777776653 2334466777778888777764
No 112
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=3.6e-18 Score=175.09 Aligned_cols=95 Identities=21% Similarity=0.257 Sum_probs=70.7
Q ss_pred CCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCcccCc-cccCCCCCC-EEECcCCCCCccCcc-cccCCCCcEE
Q psy6452 498 LSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKLPE-SFANLKSLK-ILDVSYNKLTMLPDG-FVMLSNLTTF 573 (594)
Q Consensus 498 l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~-~L~Ls~N~l~~ip~~-l~~l~~L~~L 573 (594)
+++|+.|+|++|+++.||+. |.++++|+.|+|++| ++.|+. +|.++++|+ .+++.+ .++.|++. |.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 56777777777777777765 777777777777776 777755 777777777 777777 67777544 7777778877
Q ss_pred EccCCCCcccCHhHHhhhhCC
Q psy6452 574 YAQRKYWMFLTISLLCYLMGL 594 (594)
Q Consensus 574 ~L~~N~l~~l~~~~~~~l~~L 594 (594)
++++|.++.|+..+|.++.+|
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCC
T ss_pred EeCCCccCccchhhhcCCcch
Confidence 777777777777777776654
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.2e-17 Score=173.65 Aligned_cols=171 Identities=25% Similarity=0.242 Sum_probs=138.3
Q ss_pred ccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhh-cCCCCCEEEcCCCCCCCCC--CcCCCcCccEE
Q psy6452 236 IFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQ-KLTNLIVLDLSHNKLSELP--DFLNFKVLKEL 312 (594)
Q Consensus 236 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~-~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~L 312 (594)
-+.+++++++++.+|...+ +.+++|+|++|+|++ ++...|. .+++|++|+|++|+|+.++ .|.++++|++|
T Consensus 20 ~~~l~c~~~~l~~iP~~~~---~~l~~L~Ls~N~l~~---l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSR---LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL 93 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC---TTCSEEECCSSCCCE---ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEEeCCCCcCccCccCC---CCCCEEECCCCCCCc---cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence 4688999999999887543 568899999998554 6667776 8899999999999999776 48889999999
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc-----cCCccEE
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC-----THTLQTF 387 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~-----~~~L~~L 387 (594)
+|++|+|+.++...+.. ..+|+.|+|++|+|+.+++..|.++++|+.|+|++|+|+.++...+ .++|+.|
T Consensus 94 ~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 94 DLSSNHLHTLDEFLFSD-----LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp ECCSSCCCEECTTTTTT-----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred ECCCCcCCcCCHHHhCC-----CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence 99999999887654332 2689999999999998888888899999999999999998876654 5689999
Q ss_pred eCCCCCCCCCCchhhhcccCc--ccEEECcCCC
Q psy6452 388 SMNHNIGMKIPEWFWYQEFLC--LKELNMSSTD 418 (594)
Q Consensus 388 ~L~~N~~~~ip~~~~~~~~~~--L~~L~Ls~n~ 418 (594)
++++|.+..+|... +..++. ++.|++++|.
T Consensus 169 ~L~~N~l~~l~~~~-~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 169 DLSSNKLKKLPLTD-LQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ECCSSCCCCCCHHH-HHHSCHHHHTTEECCSSC
T ss_pred ECCCCCCCccCHHH-hhhccHhhcceEEecCCC
Confidence 99999888888654 456665 4788998875
No 114
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=9.2e-18 Score=172.28 Aligned_cols=254 Identities=17% Similarity=0.110 Sum_probs=187.9
Q ss_pred cCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCC--C-CccccCC
Q psy6452 307 KVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL--H-KPRCTHT 383 (594)
Q Consensus 307 ~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l--~-~~~~~~~ 383 (594)
..++.+++++|.+. +..+... ...+++.|++++|.+.+.....+ .+++|++|++++|.++.. + .....++
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~----~~~~l~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRL----LSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHH----HHTTCSEEECTTCEECSCCCSCC-CCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred hhheeeccccccCC--HHHHHhh----hhccceEEEcCCccccccchhhc-cCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 34889999999887 2222211 12589999999999998877765 789999999999998753 2 1234579
Q ss_pred ccEEeCCCCCCCC-CCchhhhcccCcccEEECcCCCCccC-CccHHHhhhcccccccccCCCcEEEcCCc-ccccc-Ccc
Q psy6452 384 LQTFSMNHNIGMK-IPEWFWYQEFLCLKELNMSSTDPFFE-HLPIWLLNHMELKENGVFSNLISLHMQNT-AAVMS-NVS 459 (594)
Q Consensus 384 L~~L~L~~N~~~~-ip~~~~~~~~~~L~~L~Ls~n~~~~~-~lp~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~ 459 (594)
|++|++++|.+.. .+.. +..+++|+.|++++|..+.+ .++..+ ..+++|++|++++| .+++. .+.
T Consensus 120 L~~L~L~~~~l~~~~~~~--l~~~~~L~~L~L~~~~~l~~~~l~~~~---------~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNT--LAKNSNLVRLNLSGCSGFSEFALQTLL---------SSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp CSEEECTTCBCCHHHHHH--HTTCTTCSEEECTTCBSCCHHHHHHHH---------HHCTTCCEEECCCCTTCCHHHHHH
T ss_pred CCEEeCcCcccCHHHHHH--HhcCCCCCEEECCCCCCCCHHHHHHHH---------hcCCCCCEEcCCCCCCcChHHHHH
Confidence 9999999997663 3333 36799999999999843443 244322 34679999999999 88865 466
Q ss_pred ccccCC-CcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCcccc-Cc-cccccccCCCCCcEEEccCCC-Cc
Q psy6452 460 QLKYLK-NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQ-LN-CIPEDIGNLICLEKLNISHNK-VY 535 (594)
Q Consensus 460 ~~~~l~-~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~-l~-~ip~~~~~l~~L~~L~Ls~N~-l~ 535 (594)
.+..++ +|++|++++|..... -+.+|..+..+++|++|++++|. ++ ..+..+..+++|++|++++|. +.
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~-------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQ-------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSC-------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred HHHhcccCCCEEEeCCCcccCC-------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 688899 999999999721100 04556677788999999999999 66 566778999999999999995 33
Q ss_pred cc-CccccCCCCCCEEECcCCCCCccCcccccC-CCCcEEEccCCCCcccCHhHH
Q psy6452 536 KL-PESFANLKSLKILDVSYNKLTMLPDGFVML-SNLTTFYAQRKYWMFLTISLL 588 (594)
Q Consensus 536 ~l-p~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l-~~L~~L~L~~N~l~~l~~~~~ 588 (594)
.- ...+..+++|+.|++++| ++. ..+..+ .+|+.|++++|+++.+.+..+
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred HHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhhCcceEEecccCccccCCcc
Confidence 11 125788999999999999 432 124444 347778899999998776544
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=3.9e-20 Score=203.09 Aligned_cols=118 Identities=20% Similarity=0.272 Sum_probs=60.1
Q ss_pred CcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCC
Q psy6452 443 LISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLI 522 (594)
Q Consensus 443 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~ 522 (594)
|+.|++++|.+++. |. +..+++|+.|++++| .+..+|..++.+++|+.|+|++|.|+.+| .+..++
T Consensus 443 L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N-----------~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~ 508 (567)
T 1dce_A 443 VRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHN-----------RLRALPPALAALRCLEVLQASDNALENVD-GVANLP 508 (567)
T ss_dssp CSEEECTTSCCSSC-CC-GGGGTTCCEEECCSS-----------CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCS
T ss_pred ceEEEecCCCCCCC-cC-ccccccCcEeecCcc-----------cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCC
Confidence 44555555555443 22 555555555555553 23345555555555555555555555554 455555
Q ss_pred CCcEEEccCCCCccc--CccccCCCCCCEEECcCCCCCccCccc----ccCCCCcEEE
Q psy6452 523 CLEKLNISHNKVYKL--PESFANLKSLKILDVSYNKLTMLPDGF----VMLSNLTTFY 574 (594)
Q Consensus 523 ~L~~L~Ls~N~l~~l--p~~~~~l~~L~~L~Ls~N~l~~ip~~l----~~l~~L~~L~ 574 (594)
+|++|+|++|+|+.+ |..+..+++|+.|+|++|+|+.+|... ..+++|+.|+
T Consensus 509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 555555555555544 445555555555555555555443322 2245555554
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=5.3e-17 Score=156.43 Aligned_cols=88 Identities=23% Similarity=0.357 Sum_probs=45.4
Q ss_pred cccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCccc-CccccCCCCCCEEECcCCCCCcc-CcccccCCCC
Q psy6452 494 SILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKL-PESFANLKSLKILDVSYNKLTML-PDGFVMLSNL 570 (594)
Q Consensus 494 ~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~l~~L 570 (594)
.|..+++|++|+|++|.|+.++.. |..+++|++|+|++|+|+.+ |..|..+++|++|+|++|+|+.+ |..|..+++|
T Consensus 76 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 155 (220)
T 2v70_A 76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTC
T ss_pred HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCC
Confidence 344455555555555555544433 45555555555555555544 33455555555555555555544 3335555555
Q ss_pred cEEEccCCCCc
Q psy6452 571 TTFYAQRKYWM 581 (594)
Q Consensus 571 ~~L~L~~N~l~ 581 (594)
++|+|++|+|+
T Consensus 156 ~~L~L~~N~l~ 166 (220)
T 2v70_A 156 STLNLLANPFN 166 (220)
T ss_dssp CEEECCSCCEE
T ss_pred CEEEecCcCCc
Confidence 55555555554
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=8.2e-17 Score=152.23 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=94.5
Q ss_pred CCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcc-cccccc
Q psy6452 441 SNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC-IPEDIG 519 (594)
Q Consensus 441 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~-ip~~~~ 519 (594)
++|++|++++|.++. +..+..+++|++|++++| ...+..|..+..+++|++|++++|.++. .|..+.
T Consensus 66 ~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n----------~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~ 133 (197)
T 4ezg_A 66 HNIKDLTINNIHATN--YNPISGLSNLERLRIMGK----------DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133 (197)
T ss_dssp TTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECT----------TCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHT
T ss_pred CCCCEEEccCCCCCc--chhhhcCCCCCEEEeECC----------ccCcccChhhcCCCCCCEEEecCCccCcHhHHHHh
Confidence 344444454443332 235667777777887776 3334456667778889999999998884 566788
Q ss_pred CCCCCcEEEccCCC-CcccCccccCCCCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCcc
Q psy6452 520 NLICLEKLNISHNK-VYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMF 582 (594)
Q Consensus 520 ~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ 582 (594)
.+++|++|+|++|+ ++.+| .+..+++|++|++++|+|+.++ .+..+++|++|++++|+|..
T Consensus 134 ~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 134 TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred hCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 89999999999998 88886 5888899999999999999886 68888999999999998764
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.8e-16 Score=149.82 Aligned_cols=154 Identities=16% Similarity=0.175 Sum_probs=111.8
Q ss_pred ccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhccccc
Q psy6452 357 VHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKE 436 (594)
Q Consensus 357 ~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~ 436 (594)
..+++|+.|++++|.++.++.....++|++|++++|.+..++ .
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-------------------------------------~ 83 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-------------------------------------P 83 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-------------------------------------G
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-------------------------------------h
Confidence 356677888888887776553333344444444444333222 2
Q ss_pred ccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCcccc-Ccccc
Q psy6452 437 NGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQ-LNCIP 515 (594)
Q Consensus 437 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~-l~~ip 515 (594)
+..+++|++|++++|.+++..+..+..+++|++|++++| ...+..|..+..+++|++|++++|. ++.+|
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n----------~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS----------AHDDSILTKINTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS----------BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC----------ccCcHhHHHHhhCCCCCEEEccCCCCccccH
Confidence 234567777777777777777778888899999999987 4444567778888999999999997 88887
Q ss_pred ccccCCCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCc
Q psy6452 516 EDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTM 559 (594)
Q Consensus 516 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ 559 (594)
.+..+++|++|++++|+++.++ .+..+++|++|++++|+|..
T Consensus 154 -~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 154 -PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred -hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 5888999999999999999887 68889999999999998863
No 119
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.67 E-value=1.1e-15 Score=160.59 Aligned_cols=265 Identities=10% Similarity=0.127 Sum_probs=182.4
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~ 311 (594)
..++.+.+.. .++.|+..+|.++ +|+.+.+..+ +..++..+|.+ .+|+.+.+.. .++.++ .|.++++|+.
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~----i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG----LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT----CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC----ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 5667777754 6888888888875 7999998876 44577788877 4799999985 677666 5888899999
Q ss_pred EeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCC
Q psy6452 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNH 391 (594)
Q Consensus 312 L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~ 391 (594)
+++++|.++.++...+.. .+|+.+.+.. .++.|+..+|.++++|+.+++..| ++.+...+|..
T Consensus 185 l~l~~n~l~~I~~~aF~~------~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~--------- 247 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFVY------AGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE--------- 247 (401)
T ss_dssp EECTTSCCSEECTTTTTT------CCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT---------
T ss_pred eecCCCcceEechhhEee------cccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc---------
Confidence 999999999888776542 5788888874 488888889989999999998864 55554444321
Q ss_pred CCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEe
Q psy6452 392 NIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN 471 (594)
Q Consensus 392 N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 471 (594)
.+|+.+.+.+ .++.+...+|.++++|+.++
T Consensus 248 ---------------~~L~~i~lp~-----------------------------------~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 248 ---------------SGITTVKLPN-----------------------------------GVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp ---------------CCCSEEEEET-----------------------------------TCCEECTTTTTTCTTCCEEE
T ss_pred ---------------CCccEEEeCC-----------------------------------CccEEChhHhhCCCCCCEEE
Confidence 2233333321 22233334455555555555
Q ss_pred CCCCcCcccccccccccccC-cccccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCcccCc-cccCCCCCC
Q psy6452 472 CSNDIDHRKSQDFVNVLWEL-PLSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKLPE-SFANLKSLK 548 (594)
Q Consensus 472 Ls~n~~~~~~~~~~n~~~~i-p~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~ 548 (594)
+.+|.... +....+ +.+|.++++|+.++|. +.++.|+.. |.++++|+.+.|..| ++.|.. +|.++ +|+
T Consensus 278 l~~~~~~~------~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~ 348 (401)
T 4fdw_A 278 TYGSTFND------DPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIK 348 (401)
T ss_dssp EESSCCCC------CTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCC
T ss_pred eCCccccC------CcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCC
Confidence 55432110 011122 2356677788888888 457777664 888888888888554 777754 78888 889
Q ss_pred EEECcCCCCCccCcc-cccCC-CCcEEEccCCCCcc
Q psy6452 549 ILDVSYNKLTMLPDG-FVMLS-NLTTFYAQRKYWMF 582 (594)
Q Consensus 549 ~L~Ls~N~l~~ip~~-l~~l~-~L~~L~L~~N~l~~ 582 (594)
.+++++|.+..++.. |..++ +++.|++..+.+..
T Consensus 349 ~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 349 EVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEK 384 (401)
T ss_dssp EEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHHH
T ss_pred EEEEcCCCCcccccccccCCCCCccEEEeCHHHHHH
Confidence 999988888877655 77774 77888887776543
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=1.2e-16 Score=163.87 Aligned_cols=286 Identities=14% Similarity=0.090 Sum_probs=171.7
Q ss_pred CCcccEEEccCCCCcccchHhhhc-CCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCC------
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQK-LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLN------ 305 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~-l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~------ 305 (594)
+.+++.|.++++ +....-..+.. +++|++|||++|++... ....+ .++.++.+.+..|.|.. ..|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~-~~~~~---~~~~~~~~~~~~~~I~~-~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMY-SGKAG---TYPNGKFYIYMANFVPA-YAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCE-EESSS---SSGGGCCEEECTTEECT-TTTEEEETTEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEe-cCccc---cccccccccccccccCH-HHhcccccccc
Confidence 456788888764 33222233344 77888888888886521 12222 22224555555553321 13566
Q ss_pred --CcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCC----CCCCCcc
Q psy6452 306 --FKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQI----KILHKPR 379 (594)
Q Consensus 306 --l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l----~~l~~~~ 379 (594)
+++|+.|+|.+ .++.|+...+... .+|+.+++++|.+..|+..+|.++.++..+.+..+.. ..+....
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~-----~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~ 171 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGC-----DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFA 171 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTC-----TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcC-----cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccc
Confidence 77777777777 7777776655332 5777788887777777778887777777776665321 1122111
Q ss_pred ccCCccEEeCCCCCCCCCCchhhhcccCccc-EEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCc
Q psy6452 380 CTHTLQTFSMNHNIGMKIPEWFWYQEFLCLK-ELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNV 458 (594)
Q Consensus 380 ~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~-~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 458 (594)
|..+..|+ .+.+.. .+.++..+... .....++..+.+.++-......
T Consensus 172 -----------------------f~~~~~L~~~i~~~~----~~~l~~~~~~~-----~~~~~~~~~l~~~~~l~~~~~~ 219 (329)
T 3sb4_A 172 -----------------------FIEGEPLETTIQVGA----MGKLEDEIMKA-----GLQPRDINFLTIEGKLDNADFK 219 (329)
T ss_dssp -----------------------EEESCCCEEEEEECT----TCCHHHHHHHT-----TCCGGGCSEEEEEECCCHHHHH
T ss_pred -----------------------cccccccceeEEecC----CCcHHHHHhhc-----ccCccccceEEEeeeecHHHHH
Confidence 22333333 333332 22233322211 0112244444444332111111
Q ss_pred cccccCCCcceEeCCCCcCcccccccccccccCcc-cccCCCCCcEEeCccccCcccccc-ccCCCCCc-EEEccCCCCc
Q psy6452 459 SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPL-SILYLSSIQELHLSNVQLNCIPED-IGNLICLE-KLNISHNKVY 535 (594)
Q Consensus 459 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~-~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~-~L~Ls~N~l~ 535 (594)
.....+++|+.+++++| .+..+|. +|.++++|+.|+|.+| ++.|+.. |.++++|+ .+++.+ +++
T Consensus 220 ~l~~~~~~L~~l~L~~n-----------~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~ 286 (329)
T 3sb4_A 220 LIRDYMPNLVSLDISKT-----------NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT 286 (329)
T ss_dssp HHHHHCTTCCEEECTTB-----------CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC
T ss_pred HHHHhcCCCeEEECCCC-----------CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce
Confidence 11123677777777774 3445553 4667788888888887 8888765 88888898 899988 788
Q ss_pred ccCc-cccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEc
Q psy6452 536 KLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYA 575 (594)
Q Consensus 536 ~lp~-~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L 575 (594)
.|+. +|.++++|+.|++++|+++.|+.. |.++++|+.++.
T Consensus 287 ~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 287 AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8854 888899999999988999988765 888888888864
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=3.8e-18 Score=187.31 Aligned_cols=125 Identities=22% Similarity=0.220 Sum_probs=107.8
Q ss_pred CcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCC
Q psy6452 443 LISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLI 522 (594)
Q Consensus 443 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~ 522 (594)
|..+.+.+|.++...+ ..|+.|++++| .+..+|. +..+++|+.|+|++|.|+.+|..++.++
T Consensus 425 L~~l~l~~n~i~~l~~------~~L~~L~Ls~n-----------~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 486 (567)
T 1dce_A 425 LRSKFLLENSVLKMEY------ADVRVLHLAHK-----------DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALR 486 (567)
T ss_dssp HHHHHHHHHHHHHHHH------TTCSEEECTTS-----------CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCT
T ss_pred hhhhhhhcccccccCc------cCceEEEecCC-----------CCCCCcC-ccccccCcEeecCcccccccchhhhcCC
Confidence 3344444455544322 25899999995 5566886 9999999999999999999999999999
Q ss_pred CCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCcc--CcccccCCCCcEEEccCCCCcccCHh
Q psy6452 523 CLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTML--PDGFVMLSNLTTFYAQRKYWMFLTIS 586 (594)
Q Consensus 523 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~i--p~~l~~l~~L~~L~L~~N~l~~l~~~ 586 (594)
+|+.|+|++|+|+.+| .+..+++|++|+|++|+|+.+ |..+..+++|+.|+|++|+++.+|+.
T Consensus 487 ~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 487 CLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp TCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 9999999999999998 899999999999999999987 88899999999999999999998764
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=2.3e-16 Score=145.07 Aligned_cols=135 Identities=23% Similarity=0.190 Sum_probs=116.3
Q ss_pred cCCCcEEEcCCcccc-ccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcc-cccc
Q psy6452 440 FSNLISLHMQNTAAV-MSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC-IPED 517 (594)
Q Consensus 440 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~-ip~~ 517 (594)
.++|+.|++++|.++ +..+..+..+++|++|++++| .+..+ ..+..+++|++|+|++|.++. +|..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-----------~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~ 90 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-----------GLISV-SNLPKLPKLKKLELSENRIFGGLDML 90 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-----------CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHH
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-----------CCCCh-hhhccCCCCCEEECcCCcCchHHHHH
Confidence 468889999999887 566777888999999999996 34444 577888999999999999997 7777
Q ss_pred ccCCCCCcEEEccCCCCcccC--ccccCCCCCCEEECcCCCCCccCc----ccccCCCCcEEEccCCCCcccCHh
Q psy6452 518 IGNLICLEKLNISHNKVYKLP--ESFANLKSLKILDVSYNKLTMLPD----GFVMLSNLTTFYAQRKYWMFLTIS 586 (594)
Q Consensus 518 ~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~~L~Ls~N~l~~ip~----~l~~l~~L~~L~L~~N~l~~l~~~ 586 (594)
+..+++|++|+|++|+|+.+| ..+..+++|++|++++|+++.+|. .+..+++|++|++++|.+..+|.+
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 778999999999999999886 688999999999999999998877 688999999999999999988753
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=1.9e-16 Score=179.03 Aligned_cols=120 Identities=24% Similarity=0.242 Sum_probs=63.5
Q ss_pred ccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCccc
Q psy6452 458 VSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKL 537 (594)
Q Consensus 458 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~l 537 (594)
+..+..+..|+.|+|++| .+..+|..++.+++|++|+|++|.|+.+|..|..+++|++|+|++|+|+.|
T Consensus 217 ~~~~~~l~~L~~L~Ls~n-----------~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l 285 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNL-----------QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL 285 (727)
T ss_dssp -----CCCCCCEEECTTS-----------CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC
T ss_pred hhhhccCCCCcEEECCCC-----------CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc
Confidence 344455555555555553 233455555555555555555555555555555555555555555555555
Q ss_pred CccccCCCCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCcccCHhHH
Q psy6452 538 PESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLTISLL 588 (594)
Q Consensus 538 p~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~~~~~ 588 (594)
|..|..+++|++|+|++|.|+.||..|..+++|++|+|++|+|+..++..+
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred ChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 555555555555555555555555555555555555555555555444444
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=1.5e-16 Score=179.98 Aligned_cols=115 Identities=25% Similarity=0.310 Sum_probs=59.1
Q ss_pred hHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC-CcCCCcCccEEeccCCccccCchhhhhc
Q psy6452 251 ESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP-DFLNFKVLKELDISHNNFESMPLCLQVH 329 (594)
Q Consensus 251 ~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~l~~L~~L~Ls~N~l~~lp~~~~~~ 329 (594)
+..|..++.|+.|+|++|.+.. ++..++ .+++|++|+|++|.|+.+| .|.++++|++|+|++|.|+.+|..+...
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~---l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFN---ISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp -----CCCCCCEEECTTSCCSC---CCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred hhhhccCCCCcEEECCCCCCCC---CChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence 3444555555555555555332 344443 5555555555555555555 3555555555555555555555443322
Q ss_pred cccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCC
Q psy6452 330 FYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH 376 (594)
Q Consensus 330 ~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 376 (594)
.+|++|+|++|.|+.+|.. |..+++|++|+|++|.|++..
T Consensus 293 ------~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 293 ------FQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp ------TTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHH
T ss_pred ------CCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCCC
Confidence 3555555555555555544 445666666666666665543
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=6.6e-15 Score=154.60 Aligned_cols=249 Identities=12% Similarity=0.139 Sum_probs=166.7
Q ss_pred hhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccEEeccCCccccCchhhhhccc
Q psy6452 254 SQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKELDISHNNFESMPLCLQVHFY 331 (594)
Q Consensus 254 f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~ 331 (594)
+..+..++.+.+..+ +..++..+|.+. +|+.+.+..+ ++.|+ .|.+ .+|+.+.+.. .++.|+.
T Consensus 109 ~~~~~~l~~i~ip~~----i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~------- 173 (401)
T 4fdw_A 109 TEILKGYNEIILPNS----VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKE------- 173 (401)
T ss_dssp EEECSSCSEEECCTT----CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECS-------
T ss_pred EEecCCccEEEECCc----cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehH-------
Confidence 345577788887753 445677777764 6888887765 66555 3555 3566666654 4444443
Q ss_pred cccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCcccc-CCccEEeCCCCCCCCCCchhhhcccCccc
Q psy6452 332 VHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCT-HTLQTFSMNHNIGMKIPEWFWYQEFLCLK 410 (594)
Q Consensus 332 ~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~L~~N~~~~ip~~~~~~~~~~L~ 410 (594)
.+|.++++|+.+++++|.++.++...|. .+|+.+.+..+ +..|+... |..+++|+
T Consensus 174 ----------------------~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~a-F~~~~~L~ 229 (401)
T 4fdw_A 174 ----------------------DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQA-FLKTSQLK 229 (401)
T ss_dssp ----------------------STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTT-TTTCTTCC
T ss_pred ----------------------HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhH-hhCCCCCC
Confidence 3444555555555555555544433332 23344443322 33333333 34555555
Q ss_pred EEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCccccccccccccc
Q psy6452 411 ELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWE 490 (594)
Q Consensus 411 ~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ 490 (594)
.+++..+ ++.+...+|.+ .+|+.+.+.++ +..
T Consensus 230 ~l~l~~~-----------------------------------l~~I~~~aF~~-~~L~~i~lp~~------------i~~ 261 (401)
T 4fdw_A 230 TIEIPEN-----------------------------------VSTIGQEAFRE-SGITTVKLPNG------------VTN 261 (401)
T ss_dssp CEECCTT-----------------------------------CCEECTTTTTT-CCCSEEEEETT------------CCE
T ss_pred EEecCCC-----------------------------------ccCcccccccc-CCccEEEeCCC------------ccE
Confidence 5555442 33344566666 67888888653 334
Q ss_pred C-cccccCCCCCcEEeCccccCc-----ccccc-ccCCCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCccCc
Q psy6452 491 L-PLSILYLSSIQELHLSNVQLN-----CIPED-IGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPD 562 (594)
Q Consensus 491 i-p~~~~~l~~L~~L~Ls~N~l~-----~ip~~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ip~ 562 (594)
+ +.+|.++++|+.+++.+|.+. .|+.. |.++++|+.++|. +.++.|+. +|.++++|+.+.|..| ++.|+.
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 4 356778999999999998876 67654 9999999999999 56999966 8999999999999654 888865
Q ss_pred c-cccCCCCcEEEccCCCCcccCHhHHhhhh
Q psy6452 563 G-FVMLSNLTTFYAQRKYWMFLTISLLCYLM 592 (594)
Q Consensus 563 ~-l~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 592 (594)
. |..+ +|+.+++.+|.+..++...|.++.
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred HhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence 5 9999 999999999999999988887653
No 126
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.62 E-value=9.7e-15 Score=153.38 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=50.3
Q ss_pred cccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCccCcc-cccCCCC
Q psy6452 494 SILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNL 570 (594)
Q Consensus 494 ~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L 570 (594)
.+..+.+|+.+.+..+ ++.|++. |.++.+|+.++|.++ ++.|.. +|.++.+|+.+++..| ++.|+.. |.++++|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3445566666666543 5555443 666666666666533 666643 6666666666666654 6655443 6666666
Q ss_pred cEEEccCCCCccc
Q psy6452 571 TTFYAQRKYWMFL 583 (594)
Q Consensus 571 ~~L~L~~N~l~~l 583 (594)
+.+++..+ ++.+
T Consensus 369 ~~i~lp~~-~~~~ 380 (394)
T 4fs7_A 369 KKVELPKR-LEQY 380 (394)
T ss_dssp CEEEEEGG-GGGG
T ss_pred CEEEECCC-CEEh
Confidence 66666543 3434
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=4.5e-15 Score=137.59 Aligned_cols=130 Identities=25% Similarity=0.318 Sum_probs=106.9
Q ss_pred cEEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccC
Q psy6452 153 STRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232 (594)
Q Consensus 153 ~~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~ 232 (594)
+.+++++++++.+|...+++|++|++++|+++++++ ..|..
T Consensus 10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~---------------------------------------~~~~~ 50 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPH---------------------------------------GVFDK 50 (177)
T ss_dssp TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCT---------------------------------------TTTTT
T ss_pred CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCH---------------------------------------HHhcC
Confidence 367778888999998778899999999999887651 12245
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCcc
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLK 310 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~ 310 (594)
+++|++|++++|+|+.+++..|..+++|++|++++|++++ +++..+..+++|++|++++|.++.+|. |..+++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 127 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS---LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc---cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccC
Confidence 6789999999999999988888889999999999999665 566777888999999999999998874 67789999
Q ss_pred EEeccCCccccCch
Q psy6452 311 ELDISHNNFESMPL 324 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~ 324 (594)
+|++++|.++..++
T Consensus 128 ~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 128 KIWLHTNPWDCSCP 141 (177)
T ss_dssp EEECCSSCBCCCHH
T ss_pred EEEecCCCeeccCc
Confidence 99999998886443
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=3e-15 Score=141.03 Aligned_cols=125 Identities=22% Similarity=0.261 Sum_probs=107.6
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
.+++++++++.||..++++|++|+|++|+|+.++ ..|..+
T Consensus 14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip----------------------------------------~~~~~l 53 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP----------------------------------------KELSNY 53 (193)
T ss_dssp EEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC----------------------------------------GGGGGC
T ss_pred EEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH----------------------------------------HHhhcc
Confidence 6778889999999888889999999999998654 122457
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~~ 311 (594)
++|++|+|++|+|+.+++..|.++++|++|+|++|+|++ +++..|..+++|++|+|++|.|+.+|. |..+++|++
T Consensus 54 ~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~---i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (193)
T 2wfh_A 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC---IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130 (193)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB---CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE---eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccE
Confidence 889999999999999999889999999999999999655 667778899999999999999998884 778999999
Q ss_pred EeccCCcccc
Q psy6452 312 LDISHNNFES 321 (594)
Q Consensus 312 L~Ls~N~l~~ 321 (594)
|++++|.+..
T Consensus 131 L~L~~N~~~C 140 (193)
T 2wfh_A 131 LAIGANPLYC 140 (193)
T ss_dssp EECCSSCEEC
T ss_pred EEeCCCCeec
Confidence 9999998874
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=4.8e-15 Score=139.49 Aligned_cols=128 Identities=19% Similarity=0.303 Sum_probs=107.6
Q ss_pred cEEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccC
Q psy6452 153 STRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232 (594)
Q Consensus 153 ~~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~ 232 (594)
+.+++++|+++.||..+..+|++|++++|+|+++++. ..|..
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~--------------------------------------~~~~~ 52 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSD--------------------------------------GLFGR 52 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCS--------------------------------------CSGGG
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCc--------------------------------------ccccc
Confidence 3678889999999988888999999999999887621 11245
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCC-C-CcCCCcCcc
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSEL-P-DFLNFKVLK 310 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p-~~~~l~~L~ 310 (594)
+++|++|+|++|+|+.+.+..|.++++|++|+|++|+|++ +++..|..+++|++|+|++|+|+.+ | .|..+++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE---ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE---ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCc---cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 7889999999999999988888999999999999999655 6667778899999999999999965 3 477889999
Q ss_pred EEeccCCcccc
Q psy6452 311 ELDISHNNFES 321 (594)
Q Consensus 311 ~L~Ls~N~l~~ 321 (594)
+|++++|.++.
T Consensus 130 ~L~L~~N~l~c 140 (192)
T 1w8a_A 130 SLNLASNPFNC 140 (192)
T ss_dssp EEECTTCCBCC
T ss_pred EEEeCCCCccC
Confidence 99999999885
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.1e-14 Score=134.99 Aligned_cols=129 Identities=22% Similarity=0.282 Sum_probs=110.2
Q ss_pred cccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCccEE
Q psy6452 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKEL 312 (594)
Q Consensus 235 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~~L 312 (594)
..+.+++++++++.+|... .++|++|++++|++++ +++..|..+++|++|++++|.++.++. |..+++|++|
T Consensus 8 ~~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQS---LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccE---eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 4678999999999998654 3789999999999665 667778899999999999999998884 7899999999
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCC
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 374 (594)
++++|.++++|...+. ..++|++|++++|.++.++...|..+++|++|++++|.++.
T Consensus 82 ~l~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFD-----KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCCCCccccCHHHhh-----CCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 9999999998865432 22689999999999999998888889999999999998875
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=9.2e-15 Score=137.64 Aligned_cols=125 Identities=20% Similarity=0.318 Sum_probs=96.0
Q ss_pred cEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccc-cccCCC
Q psy6452 444 ISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPE-DIGNLI 522 (594)
Q Consensus 444 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~ 522 (594)
+.++++++.++..... + .++|+.|++++| .+..+|..+..+++|+.|+|++|.|+.++. .|.+++
T Consensus 13 ~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n-----------~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~ 78 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-I--PRDVTELYLDGN-----------QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78 (193)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCCEEECCSS-----------CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CEEEcCCCCCCcCCCC-C--CCCCCEEECCCC-----------cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC
Confidence 4556666666544322 2 246788888874 455777778888888888888888887765 488888
Q ss_pred CCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcc
Q psy6452 523 CLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMF 582 (594)
Q Consensus 523 ~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ 582 (594)
+|++|+|++|+|+.++. .|..+++|++|+|++|+|+.+|.. |..+++|+.|+|++|+|..
T Consensus 79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 88888888888888855 788888888888888888888775 7888888888888888864
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.1e-15 Score=135.63 Aligned_cols=126 Identities=24% Similarity=0.264 Sum_probs=93.1
Q ss_pred cCCCcEEEcCCcccc-ccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcc-cccc
Q psy6452 440 FSNLISLHMQNTAAV-MSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC-IPED 517 (594)
Q Consensus 440 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~-ip~~ 517 (594)
.++++.|++++|.++ +..+..+..+++|++|++++| .+..+ ..+..+++|++|++++|.|+. +|..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-----------~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~ 83 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-----------GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL 83 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-----------CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-----------CCCCc-hhhhcCCCCCEEECCCCcccchHHHH
Confidence 357778888888777 566667777888888888875 23333 456677788888888888886 6666
Q ss_pred ccCCCCCcEEEccCCCCcccC--ccccCCCCCCEEECcCCCCCccCc----ccccCCCCcEEEccC
Q psy6452 518 IGNLICLEKLNISHNKVYKLP--ESFANLKSLKILDVSYNKLTMLPD----GFVMLSNLTTFYAQR 577 (594)
Q Consensus 518 ~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~~L~Ls~N~l~~ip~----~l~~l~~L~~L~L~~ 577 (594)
+..+++|++|++++|+++.++ ..+..+++|++|++++|+++.+|. .+..+++|++|++++
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777788888888888888764 567778888888888888887765 477788888887763
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=5.3e-15 Score=132.97 Aligned_cols=121 Identities=24% Similarity=0.161 Sum_probs=107.4
Q ss_pred cCCCcceEeCCCCcCccccccccccc-ccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcc-cCcc
Q psy6452 463 YLKNIKYLNCSNDIDHRKSQDFVNVL-WELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYK-LPES 540 (594)
Q Consensus 463 ~l~~L~~L~Ls~n~~~~~~~~~~n~~-~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~-lp~~ 540 (594)
..++|+.|++++| ... +.+|..+..+++|+.|++++|.|+.+ ..+..+++|++|+|++|+++. +|..
T Consensus 15 ~~~~l~~L~l~~n----------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~ 83 (149)
T 2je0_A 15 TPSDVKELVLDNS----------RSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL 83 (149)
T ss_dssp CGGGCSEEECTTC----------BCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH
T ss_pred CCccCeEEEccCC----------cCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHH
Confidence 3478999999997 333 47888889999999999999999988 679999999999999999998 7777
Q ss_pred ccCCCCCCEEECcCCCCCccC--cccccCCCCcEEEccCCCCcccCH---hHHhhhhCC
Q psy6452 541 FANLKSLKILDVSYNKLTMLP--DGFVMLSNLTTFYAQRKYWMFLTI---SLLCYLMGL 594 (594)
Q Consensus 541 ~~~l~~L~~L~Ls~N~l~~ip--~~l~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L 594 (594)
+..+++|++|++++|+|+.+| ..+..+++|++|++++|+++.++. ..+..+.+|
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence 888999999999999999875 679999999999999999999998 678777664
No 134
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=6.9e-15 Score=135.08 Aligned_cols=111 Identities=28% Similarity=0.335 Sum_probs=87.5
Q ss_pred CCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcccc--ccc
Q psy6452 441 SNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIP--EDI 518 (594)
Q Consensus 441 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip--~~~ 518 (594)
++|+.|++++|.++.. ..+..+++|++|++++| ...+.+|..+..+++|++|+|++|.|+.+| ..+
T Consensus 49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N----------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l 116 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSEN----------RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPL 116 (168)
T ss_dssp GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESC----------CCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGG
T ss_pred CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCC----------cCchHHHHHHhhCCCCCEEeccCCccCcchhHHHH
Confidence 3455555555555544 56677788888888886 333336666667899999999999999876 568
Q ss_pred cCCCCCcEEEccCCCCcccCc----cccCCCCCCEEECcCCCCCccCcc
Q psy6452 519 GNLICLEKLNISHNKVYKLPE----SFANLKSLKILDVSYNKLTMLPDG 563 (594)
Q Consensus 519 ~~l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~Ls~N~l~~ip~~ 563 (594)
..+++|++|++++|.++.+|. .+..+++|++|++++|.+.++|++
T Consensus 117 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 117 KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 999999999999999998876 788999999999999999988875
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.56 E-value=1.2e-13 Score=145.03 Aligned_cols=303 Identities=9% Similarity=0.076 Sum_probs=184.1
Q ss_pred ccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC-----
Q psy6452 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP----- 301 (594)
Q Consensus 227 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp----- 301 (594)
..+|.++.+|+++.+.. .++.|+..+|.++++|+.+++..+ +..+...+|.++.+|+.+.+..+ +..+.
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~----l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS----VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT----CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC----ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence 45677778888888864 488888888888888888888754 33466777777777777666543 22111
Q ss_pred -------------------CcCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCC
Q psy6452 302 -------------------DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKL 362 (594)
Q Consensus 302 -------------------~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L 362 (594)
.|.++++|+.+.+.++ ++.++...+.. ..+|+.+++..+ ++.|...+|.++..|
T Consensus 138 ~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~-----c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 138 GCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSG-----CGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-----CTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred cccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccC-----CCCceEEEcCCC-ceEeCchhhcccccc
Confidence 2455566666666543 23344333321 145555555544 555556666666666
Q ss_pred cEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCC
Q psy6452 363 VKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSN 442 (594)
Q Consensus 363 ~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~ 442 (594)
+.+.+..+...--.......+|+.+.+... ...+.... +..+..++.+.+..+. .......+..+..
T Consensus 211 ~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~-f~~~~~l~~~~~~~~~-----------~~i~~~~F~~~~~ 277 (394)
T 4fs7_A 211 ENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSV-FYGCTDLESISIQNNK-----------LRIGGSLFYNCSG 277 (394)
T ss_dssp CBCCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSST-TTTCSSCCEEEECCTT-----------CEECSCTTTTCTT
T ss_pred ceeecCCCceEeehhhcccCCCceEEECCC-ceeccccc-ccccccceeEEcCCCc-----------ceeeccccccccc
Confidence 666555443221111111235555555433 22333333 3556666666665532 1112223344556
Q ss_pred CcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCc-ccccCCCCCcEEeCccccCcccccc-ccC
Q psy6452 443 LISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELP-LSILYLSSIQELHLSNVQLNCIPED-IGN 520 (594)
Q Consensus 443 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip-~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~ 520 (594)
++.+......+ ....|..+.+|+.+.+.++ +..++ .+|.++.+|+.++|..+ ++.|... |.+
T Consensus 278 l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~------------i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 341 (394)
T 4fs7_A 278 LKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS------------VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRG 341 (394)
T ss_dssp CCEEEECSSEE---CTTTTTTCTTCCEEEECTT------------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTT
T ss_pred cceeccCceee---ccccccccccccccccccc------------cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccC
Confidence 66666655432 3345677788888877653 22332 35677888999998754 7788654 888
Q ss_pred CCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCccCcccccCCCCcEE
Q psy6452 521 LICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTF 573 (594)
Q Consensus 521 l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L 573 (594)
+.+|+.+++..| ++.|.. +|.++.+|+.+++..+ ++.+...|.++++|+.+
T Consensus 342 c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 342 CTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred CCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence 999999999876 888855 8889999999998754 56565668888888765
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=2.4e-14 Score=134.63 Aligned_cols=87 Identities=24% Similarity=0.395 Sum_probs=48.1
Q ss_pred ccCCCCCcEEeCccccCccc-cccccCCCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCcc-CcccccCCCCc
Q psy6452 495 ILYLSSIQELHLSNVQLNCI-PEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTML-PDGFVMLSNLT 571 (594)
Q Consensus 495 ~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~i-p~~l~~l~~L~ 571 (594)
+..+++|++|+|++|+|+.+ |..|..+++|++|+|++|+|+.++. .|..+++|++|+|++|+|+.+ |..+..+++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 44555555555555555544 3345555555555555555555533 355555555555555555533 34455555555
Q ss_pred EEEccCCCCc
Q psy6452 572 TFYAQRKYWM 581 (594)
Q Consensus 572 ~L~L~~N~l~ 581 (594)
+|+|++|+|+
T Consensus 130 ~L~L~~N~l~ 139 (192)
T 1w8a_A 130 SLNLASNPFN 139 (192)
T ss_dssp EEECTTCCBC
T ss_pred EEEeCCCCcc
Confidence 5555555555
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=5.7e-15 Score=136.85 Aligned_cols=132 Identities=17% Similarity=0.115 Sum_probs=106.9
Q ss_pred cccCCCcEEEcCCccccccCccccccCC-CcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccc
Q psy6452 438 GVFSNLISLHMQNTAAVMSNVSQLKYLK-NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPE 516 (594)
Q Consensus 438 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 516 (594)
..+.+|+.|++++|.++.. +. +..+. +|++|++++|. +..+ ..+..+++|++|+|++|.|+.+|.
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~-----------l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~ 81 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNE-----------IRKL-DGFPLLRRLKTLLVNNNRICRIGE 81 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSC-----------CCEE-CCCCCCSSCCEEECCSSCCCEECS
T ss_pred CCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCC-----------CCcc-cccccCCCCCEEECCCCcccccCc
Confidence 3456778888888887754 33 44444 89999999863 3334 467788899999999999998886
Q ss_pred c-ccCCCCCcEEEccCCCCcccCc--cccCCCCCCEEECcCCCCCccCcc----cccCCCCcEEEccCCCCccc
Q psy6452 517 D-IGNLICLEKLNISHNKVYKLPE--SFANLKSLKILDVSYNKLTMLPDG----FVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 517 ~-~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~ip~~----l~~l~~L~~L~L~~N~l~~l 583 (594)
. +..+++|++|+|++|+|+.+|. .+..+++|+.|++++|+++.+|.. +..+++|+.|++++|.+...
T Consensus 82 ~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 6 5889999999999999998887 788999999999999999988875 88999999999999987654
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=4.5e-14 Score=130.72 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=104.9
Q ss_pred cccccCCCcceEeCCCCcCcccccccccccccCcccccCC-CCCcEEeCccccCccccccccCCCCCcEEEccCCCCccc
Q psy6452 459 SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYL-SSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKL 537 (594)
Q Consensus 459 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l-~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~l 537 (594)
..+..+.+|+.|++++| .+..+|. +..+ ++|+.|+|++|.|+.+ ..+..+++|++|+|++|+|+.+
T Consensus 13 ~~~~~~~~L~~L~l~~n-----------~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~ 79 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGY-----------KIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRI 79 (176)
T ss_dssp CEEECTTSCEEEECTTS-----------CCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEE
T ss_pred HhcCCcCCceEEEeeCC-----------CCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccccc
Confidence 44677899999999996 3445554 4444 4999999999999998 6799999999999999999999
Q ss_pred Cc-cccCCCCCCEEECcCCCCCccCc--ccccCCCCcEEEccCCCCcccCHh---HHhhhhCC
Q psy6452 538 PE-SFANLKSLKILDVSYNKLTMLPD--GFVMLSNLTTFYAQRKYWMFLTIS---LLCYLMGL 594 (594)
Q Consensus 538 p~-~~~~l~~L~~L~Ls~N~l~~ip~--~l~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L 594 (594)
|. .|..+++|++|+|++|+|+.+|. .+..+++|++|++++|+++.+|.. ++..+.+|
T Consensus 80 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 80 GEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQV 142 (176)
T ss_dssp CSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTC
T ss_pred CcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCcc
Confidence 76 45899999999999999999987 689999999999999999999876 56666543
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=2.3e-13 Score=125.82 Aligned_cols=105 Identities=31% Similarity=0.486 Sum_probs=87.0
Q ss_pred ceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccc-cccccCCCCCcEEEccCCCCcccCc-cccCCC
Q psy6452 468 KYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICLEKLNISHNKVYKLPE-SFANLK 545 (594)
Q Consensus 468 ~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~ 545 (594)
+.+++++ +.++.+|..+. ++|+.|+|++|+|+.+ |..|.++++|++|+|++|+|+.+|. .|..++
T Consensus 15 ~~l~~~~-----------n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 81 (174)
T 2r9u_A 15 TLVNCQN-----------IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT 81 (174)
T ss_dssp SEEECCS-----------SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cEEEeCC-----------CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcc
Confidence 5677777 45667776664 7899999999999977 4458889999999999999998876 568889
Q ss_pred CCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcccCH
Q psy6452 546 SLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFLTI 585 (594)
Q Consensus 546 ~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l~~ 585 (594)
+|++|+|++|+|+.+|.. |..+++|++|+|++|+|...+.
T Consensus 82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 999999999999988776 8889999999999999887765
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=2.7e-13 Score=124.74 Aligned_cols=106 Identities=27% Similarity=0.431 Sum_probs=87.5
Q ss_pred cceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccc-cccccCCCCCcEEEccCCCCcccCc-cccCC
Q psy6452 467 IKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICLEKLNISHNKVYKLPE-SFANL 544 (594)
Q Consensus 467 L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l 544 (594)
.+.+++++ +.+..+|..+. ++|++|+|++|+|+.+ |..|..+++|++|+|++|+|+.+|. .|..+
T Consensus 11 ~~~l~~s~-----------n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l 77 (170)
T 3g39_A 11 GTTVDCSG-----------KSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77 (170)
T ss_dssp TTEEECTT-----------SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred CCEEEeCC-----------CCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCC
Confidence 46777877 45566776553 7899999999999987 4458899999999999999998876 57889
Q ss_pred CCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcccCH
Q psy6452 545 KSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFLTI 585 (594)
Q Consensus 545 ~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l~~ 585 (594)
++|++|+|++|+|+.+|.. |..+++|++|+|++|+|+....
T Consensus 78 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 78 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999999999999988775 8889999999999999887654
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.45 E-value=8.7e-12 Score=130.79 Aligned_cols=131 Identities=11% Similarity=0.119 Sum_probs=69.1
Q ss_pred CccCCC-cccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCC
Q psy6452 229 CNKQYH-DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLN 305 (594)
Q Consensus 229 ~~~~l~-~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~ 305 (594)
+|.++. .|+++.+.. .++.|...+|.++.+|+.+.++.|.-..+..+...+|.++.+|+.+.+..+ ++.++ .|..
T Consensus 58 aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 444443 466666653 366666666666666666666665444444555666666666666655443 44333 3556
Q ss_pred CcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCC
Q psy6452 306 FKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISH 369 (594)
Q Consensus 306 l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~ 369 (594)
+.+|+.+.+.. .++.++...+.. ...|+.+.+..+ ++.|...+|. ..+|+.+.+..
T Consensus 136 c~~L~~i~lp~-~~~~I~~~~F~~-----c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~ 191 (394)
T 4gt6_A 136 CEELDTVTIPE-GVTSVADGMFSY-----CYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPA 191 (394)
T ss_dssp CTTCCEEECCT-TCCEECTTTTTT-----CTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECT
T ss_pred hcccccccccc-eeeeecccceec-----ccccccccccce-eeEecccccc-ccceeEEEECC
Confidence 66666666643 233343333211 134555555432 4455555553 24455555543
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=5.3e-16 Score=146.75 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=110.1
Q ss_pred cccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccc
Q psy6452 404 QEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQD 483 (594)
Q Consensus 404 ~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~ 483 (594)
.....++.++++.+. +.|.+|.. .... ..+..+++|++|++++|.+++. + .+..+++|++|++++|
T Consensus 15 ~~~~~l~~l~l~~~~-l~~~~~~l--~~l~-~~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n-------- 80 (198)
T 1ds9_A 15 EERKSVVATEAEKVE-LHGMIPPI--EKMD-ATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRN-------- 80 (198)
T ss_dssp HHTTCCCCTTCSEEE-CCBCCTTC--CCCH-HHHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEE--------
T ss_pred HhcccccCcchheeE-eccccCcH--hhhh-HHHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCC--------
Confidence 344556666665543 34444320 0000 0223466888888888888774 3 7778888888888874
Q ss_pred cccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCc--cccCCCCCCEEECcCCCCCcc-
Q psy6452 484 FVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPE--SFANLKSLKILDVSYNKLTML- 560 (594)
Q Consensus 484 ~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~i- 560 (594)
.+..+|..+..+++|++|+|++|+|+.+| .+..+++|++|+|++|+|+.++. .+..+++|++|++++|+++..
T Consensus 81 ---~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 81 ---LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp ---EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred ---CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 45567777777788888888888888876 57778888888888888887654 677888888888888888743
Q ss_pred Cc----------ccccCCCCcEEEccCCCCcccC
Q psy6452 561 PD----------GFVMLSNLTTFYAQRKYWMFLT 584 (594)
Q Consensus 561 p~----------~l~~l~~L~~L~L~~N~l~~l~ 584 (594)
|. .+..+++|++|+ +|+++...
T Consensus 157 ~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~e 188 (198)
T 1ds9_A 157 KENNATSEYRIEVVKRLPNLKKLD--GMPVDVDE 188 (198)
T ss_dssp HTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTTT
T ss_pred ccccchHHHHHHHHHhCCCcEEEC--CcccCHHH
Confidence 32 167788888776 77776543
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=3.5e-13 Score=124.06 Aligned_cols=87 Identities=28% Similarity=0.376 Sum_probs=65.7
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~~ 311 (594)
++|++|+|++|+|+.+++..|.++++|++|+|++|+|++ +++..|..+++|++|+|++|+|+.++. |..+++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~---l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV---LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc---cChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCE
Confidence 466777777777777777777778888888888887554 566777778888888888888887763 677888888
Q ss_pred EeccCCccccCc
Q psy6452 312 LDISHNNFESMP 323 (594)
Q Consensus 312 L~Ls~N~l~~lp 323 (594)
|+|++|.++..+
T Consensus 107 L~L~~N~~~c~c 118 (170)
T 3g39_A 107 IWLLNNPWDCAC 118 (170)
T ss_dssp EECCSSCBCTTB
T ss_pred EEeCCCCCCCCc
Confidence 888888877654
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=6.2e-13 Score=122.84 Aligned_cols=88 Identities=26% Similarity=0.359 Sum_probs=56.3
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~~ 311 (594)
++|++|+|++|+|+.+++..|.++++|++|+|++|+|++ ++...|..+++|++|+|++|+|+.+|. |..+++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA---IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc---cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCE
Confidence 345556666666666655556666666666666666444 455556666777777777777766663 666777777
Q ss_pred EeccCCccccCch
Q psy6452 312 LDISHNNFESMPL 324 (594)
Q Consensus 312 L~Ls~N~l~~lp~ 324 (594)
|+|++|.+...+.
T Consensus 110 L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 110 IYLYNNPWDCECR 122 (174)
T ss_dssp EECCSSCBCTTBG
T ss_pred EEeCCCCcccccc
Confidence 7777777765553
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.39 E-value=1.3e-11 Score=129.53 Aligned_cols=305 Identities=11% Similarity=0.169 Sum_probs=215.8
Q ss_pred CCcccchHhhhcCC-CCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCC---CCCCC--CcCCCcCccEEeccCCc
Q psy6452 245 DINFVQESMSQKLT-NLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNK---LSELP--DFLNFKVLKELDISHNN 318 (594)
Q Consensus 245 ~l~~l~~~~f~~l~-~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~---l~~lp--~~~~l~~L~~L~Ls~N~ 318 (594)
.++.|...+|.++. .|+.+.+..+ +..|...+|.++.+|+.+.+..|. ++.|+ .|.++.+|+.+.+..+
T Consensus 50 ~Vt~Ig~~aF~~~~~~L~sI~iP~s----vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~- 124 (394)
T 4gt6_A 50 PVSKIGDRVFCNYKYVLTSVQIPDT----VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS- 124 (394)
T ss_dssp EEEEECTTTTTTCCSCCCEEEECTT----CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-
T ss_pred eeeEcCHhhccCCCCcCEEEEECCC----eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-
Confidence 46788999999885 6999999864 556788999999999999998875 66565 5888999998887654
Q ss_pred cccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccC-CccEEeCCCCCCCCC
Q psy6452 319 FESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTH-TLQTFSMNHNIGMKI 397 (594)
Q Consensus 319 l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~-~L~~L~L~~N~~~~i 397 (594)
++.++...+.. ..+|+.+.+.. .+..+....|.++.+|+.+.+..+ ++.+....|.. .|+.+.+..+.. .+
T Consensus 125 ~~~I~~~aF~~-----c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~-~i 196 (394)
T 4gt6_A 125 VTEIDSEAFHH-----CEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT-RI 196 (394)
T ss_dssp CSEECTTTTTT-----CTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC-EE
T ss_pred cceehhhhhhh-----hcccccccccc-eeeeecccceecccccccccccce-eeEeccccccccceeEEEECCccc-cc
Confidence 66666555432 36899999964 567888899999999999999765 66666665543 688888765522 22
Q ss_pred CchhhhcccCcccEEECcCCCCccCCccHHHhhh-----cccccccccCCCcEEEcCCccccccCccccccCCCcceEeC
Q psy6452 398 PEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNH-----MELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472 (594)
Q Consensus 398 p~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 472 (594)
.... |..+..+.......... ..+...+... ...........+..+.+. +.++.....+|.++..|+.+.+
T Consensus 197 ~~~a-f~~c~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~l 272 (394)
T 4gt6_A 197 GTNA-FSECFALSTITSDSESY--PAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKM 272 (394)
T ss_dssp CTTT-TTTCTTCCEEEECCSSS--CBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEEC
T ss_pred ccch-hhhccccceeccccccc--ccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEec
Confidence 2222 46677777776554321 0111000000 000111122234444443 3455666778999999999998
Q ss_pred CCCcCcccccccccccccCcccccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCcccCc-cccCCCCCCEE
Q psy6452 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKLPE-SFANLKSLKIL 550 (594)
Q Consensus 473 s~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L 550 (594)
.++. ..--...|.++++|+.+.+. +.++.|++. |.++.+|+.++|..+ ++.|.. +|.++.+|+.+
T Consensus 273 p~~~-----------~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 273 PDSV-----------VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp CTTC-----------CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred cccc-----------ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence 7642 21122456788999999996 668888775 999999999999864 888855 89999999999
Q ss_pred ECcCCCCCccCcc-cccCCCCcEEEccCCCC
Q psy6452 551 DVSYNKLTMLPDG-FVMLSNLTTFYAQRKYW 580 (594)
Q Consensus 551 ~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l 580 (594)
.+.. .++.|.+. |.++++|+.+++.+|..
T Consensus 340 ~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 340 AIPS-SVTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp EECT-TCCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred EECc-ccCEEhHhHhhCCCCCCEEEECCcee
Confidence 9975 48888665 99999999999998754
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=1.9e-14 Score=135.97 Aligned_cols=132 Identities=20% Similarity=0.150 Sum_probs=97.6
Q ss_pred cCCCcEEEcCCccccccCcc------ccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcc
Q psy6452 440 FSNLISLHMQNTAAVMSNVS------QLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC 513 (594)
Q Consensus 440 ~~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ 513 (594)
...++.++++.+.+++..+. .+..+++|++|++++| .+..+| .+..+++|+.|++++|.|+.
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-----------~l~~l~-~~~~l~~L~~L~l~~n~l~~ 84 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-----------NIEKIS-SLSGMENLRILSLGRNLIKK 84 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-----------EESCCC-CHHHHTTCCEEEEEEEEECS
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-----------CCcccc-ccccCCCCCEEECCCCCccc
Confidence 34666666666666666555 6777888888888874 445566 77777888888888888888
Q ss_pred ccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCccCc--ccccCCCCcEEEccCCCCcccC
Q psy6452 514 IPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPD--GFVMLSNLTTFYAQRKYWMFLT 584 (594)
Q Consensus 514 ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip~--~l~~l~~L~~L~L~~N~l~~l~ 584 (594)
+|..+..+++|++|+|++|+++.+| .+..+++|++|++++|+|+.++. .+..+++|++|++++|+++..+
T Consensus 85 l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 85 IENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp CSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred ccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 7776777778888888888888776 57777788888888888887654 4777888888888888876553
No 147
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.31 E-value=5.3e-11 Score=124.01 Aligned_cols=305 Identities=11% Similarity=0.101 Sum_probs=163.8
Q ss_pred cCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcC
Q psy6452 231 KQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKV 308 (594)
Q Consensus 231 ~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~ 308 (594)
....+|+.+.+. ..++.|+..+|.++.+|+.++|..+ +..+...+|.++ +|+.+.+..+ ++.++ .|.. .+
T Consensus 43 ~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~----v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 43 KDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST----VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp GGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT----CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred ccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc----ceEechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence 345678888886 4688999999999999999999754 445778888776 6888877644 66555 3554 47
Q ss_pred ccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCcccc-CCccEE
Q psy6452 309 LKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCT-HTLQTF 387 (594)
Q Consensus 309 L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L 387 (594)
|+.+.+..+ ++.+....+.. .+++.+.+.. .++.+....|..+.+++.+.+..+........... ....
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~------~~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 184 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYN------SSVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNK-- 184 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTT------CCCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTS--
T ss_pred cccccCCCc-ccccccccccc------ceeeeeeccc-eeeccccchhcccccccccccccccceeecccceeccccc--
Confidence 899888765 44454443322 3455555543 45667777788888888888876654332211100 0000
Q ss_pred eCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCc
Q psy6452 388 SMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNI 467 (594)
Q Consensus 388 ~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 467 (594)
.+... +.....+..+.+.... .......+....+++.+.+..+ +......+|.++..|
T Consensus 185 --------~~~~~--~~~~~~~~~~~~~~~~-----------~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L 242 (379)
T 4h09_A 185 --------TILES--YPAAKTGTEFTIPSTV-----------KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKAL 242 (379)
T ss_dssp --------SEEEE--CCTTCCCSEEECCTTC-----------CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSC
T ss_pred --------ceecc--ccccccccccccccce-----------eEEeecccccccccceeeeccc-eeEEccccccCCccc
Confidence 00000 0112222222222110 0001111122334444444322 333334445555555
Q ss_pred ceEeCCCCcCcccccccccccccCc-ccccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCcccCc-cccCC
Q psy6452 468 KYLNCSNDIDHRKSQDFVNVLWELP-LSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKLPE-SFANL 544 (594)
Q Consensus 468 ~~L~Ls~n~~~~~~~~~~n~~~~ip-~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l 544 (594)
+.+.+..+ +..+. ..+.++.+|+.+.+..+ ++.++.. |.++.+|+.+.+.++.++.|+. +|.++
T Consensus 243 ~~i~lp~~------------v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c 309 (379)
T 4h09_A 243 DEIAIPKN------------VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDC 309 (379)
T ss_dssp CEEEECTT------------CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTC
T ss_pred eEEEcCCC------------ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCC
Confidence 55555442 11111 23444555666655432 4455443 5666666666666666666643 56666
Q ss_pred CCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcccCHhHHhh
Q psy6452 545 KSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFLTISLLCY 590 (594)
Q Consensus 545 ~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~ 590 (594)
.+|+.+.|..+ ++.|... |.++++|+.+.+..+ ++.|...+|.+
T Consensus 310 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~ 354 (379)
T 4h09_A 310 VKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEG 354 (379)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred CCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence 66666666532 5555443 666666666666443 55566665544
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=9.3e-13 Score=136.86 Aligned_cols=162 Identities=19% Similarity=0.113 Sum_probs=85.6
Q ss_pred CCccEEeCCCCCCCCCCchhhh---c-ccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccC
Q psy6452 382 HTLQTFSMNHNIGMKIPEWFWY---Q-EFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSN 457 (594)
Q Consensus 382 ~~L~~L~L~~N~~~~ip~~~~~---~-~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 457 (594)
+.|+.|++++|.++........ . ..++|+.|++++|. +...-...+. ..+.+|+.|++++|.++...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~--------~~L~~L~~L~Ls~n~l~~~~ 142 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLL--------PVFLRARKLGLQLNSLGPEA 142 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTH--------HHHHTEEEEECCSSCCCHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHH--------HHHHhccHhhcCCCCCCHHH
Confidence 4677777777766544332211 1 22567777777764 1111111111 12235677777777766554
Q ss_pred cccc-----ccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcc-----ccccccCCCCCcEE
Q psy6452 458 VSQL-----KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC-----IPEDIGNLICLEKL 527 (594)
Q Consensus 458 ~~~~-----~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L 527 (594)
...+ ...++|+.|++++|.+... -...++..+..+++|++|+|++|.|+. ++..+...++|++|
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~l~~~------~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L 216 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNPLTAA------GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL 216 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSCCHHH------HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEE
T ss_pred HHHHHHHHHhcCCccceeeCCCCCCChH------HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeE
Confidence 4444 2345666666666532211 011233344455666666666666662 33445555666666
Q ss_pred EccCCCCcc-----cCccccCCCCCCEEECcCCCCC
Q psy6452 528 NISHNKVYK-----LPESFANLKSLKILDVSYNKLT 558 (594)
Q Consensus 528 ~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~ 558 (594)
+|++|.|+. +...+...++|++|+|++|.|+
T Consensus 217 ~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp ECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred ECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 666666662 2334445566666666666666
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=3.7e-13 Score=139.88 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=76.7
Q ss_pred cCCCcEEEcCCccccccCccc----cccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcc--
Q psy6452 440 FSNLISLHMQNTAAVMSNVSQ----LKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC-- 513 (594)
Q Consensus 440 ~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~-- 513 (594)
.++|+.|++++|.++...... +..+++|++|++++|.+.... ...++..+...++|++|+|++|.|+.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g------~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG------LELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHH------HHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHH------HHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 358999999999987654443 467899999999998543211 12345566777899999999999983
Q ss_pred ---ccccccCCCCCcEEEccCCCCcccC-cccc---CCC--CCCEEE--CcCCCCC
Q psy6452 514 ---IPEDIGNLICLEKLNISHNKVYKLP-ESFA---NLK--SLKILD--VSYNKLT 558 (594)
Q Consensus 514 ---ip~~~~~l~~L~~L~Ls~N~l~~lp-~~~~---~l~--~L~~L~--Ls~N~l~ 558 (594)
++..+...++|++|+|++|.|+... ..+. ... .|+.+. +..|.++
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 4455677899999999999998431 1222 222 266776 6666665
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=2.9e-11 Score=124.32 Aligned_cols=95 Identities=22% Similarity=0.174 Sum_probs=77.0
Q ss_pred ccccCcccccCCCCCcEEeCcc-ccCccccc-cccCCCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCccCcc
Q psy6452 487 VLWELPLSILYLSSIQELHLSN-VQLNCIPE-DIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG 563 (594)
Q Consensus 487 ~~~~ip~~~~~l~~L~~L~Ls~-N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ip~~ 563 (594)
.+..+|. +..+++|+.|+|++ |.|+.+|. .|.++++|++|+|++|+|+.++. .|..+++|+.|+|++|+|+.+|..
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 6777887 88888888888886 88888874 48888888888888888887754 788888888888888888888776
Q ss_pred -cccCCCCcEEEccCCCCccc
Q psy6452 564 -FVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 564 -l~~l~~L~~L~L~~N~l~~l 583 (594)
+..++ |+.|+|++|+|...
T Consensus 99 ~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 99 TVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp TTCSCC-CCEEECCSSCCCCC
T ss_pred HcccCC-ceEEEeeCCCccCC
Confidence 44444 88888888888754
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.13 E-value=3.3e-09 Score=110.33 Aligned_cols=288 Identities=11% Similarity=0.104 Sum_probs=183.8
Q ss_pred HhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccEEeccCCccccCchhhhhc
Q psy6452 252 SMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKELDISHNNFESMPLCLQVH 329 (594)
Q Consensus 252 ~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~L~Ls~N~l~~lp~~~~~~ 329 (594)
.+|....+|+.+.+... +..|+..+|.++.+|+.++|..+ ++.|+ .|.++ +|+.+.+.. .++.++...+..
T Consensus 40 ~~~~~~~~i~~v~ip~~----vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~ 112 (379)
T 4h09_A 40 PWYKDRDRISEVRVNSG----ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQG 112 (379)
T ss_dssp TTGGGGGGCSEEEECTT----EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTT
T ss_pred cccccccCCEEEEeCCC----ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceecc
Confidence 44667788999998753 66788899999999999999754 77666 47665 677777654 355565544422
Q ss_pred cccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcc
Q psy6452 330 FYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCL 409 (594)
Q Consensus 330 ~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L 409 (594)
.+|+.+.+..+ ++.+...+|.+. +|+.+.+..+ ++.+....+ ..+..+
T Consensus 113 ------~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f-----------------------~~~~~l 160 (379)
T 4h09_A 113 ------TDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIG-----------------------YKAENL 160 (379)
T ss_dssp ------CCCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTT-----------------------TTCTTC
T ss_pred ------CCcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchh-----------------------cccccc
Confidence 35777777543 455555566443 4555544432 333332222 233444
Q ss_pred cEEECcCCCCccCCccHHH--hhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccc
Q psy6452 410 KELNMSSTDPFFEHLPIWL--LNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNV 487 (594)
Q Consensus 410 ~~L~Ls~n~~~~~~lp~~~--~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~ 487 (594)
+.+.+..++.......... ........+.....+..+.+... ........+..+.+|+.+.+..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~------------ 227 (379)
T 4h09_A 161 EKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG------------ 227 (379)
T ss_dssp CEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT------------
T ss_pred cccccccccceeecccceecccccceeccccccccccccccccc-eeEEeecccccccccceeeeccc------------
Confidence 4444333210000000000 00000011122234444444332 23334456677788888888763
Q ss_pred cccC-cccccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCccCcc-
Q psy6452 488 LWEL-PLSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG- 563 (594)
Q Consensus 488 ~~~i-p~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ip~~- 563 (594)
+..+ ...+.++..|+.+.+..+ ++.|... |.++.+|+.+.+.. .++.++. +|.++.+|+.+.+.++.++.|++.
T Consensus 228 ~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a 305 (379)
T 4h09_A 228 VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRV 305 (379)
T ss_dssp CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTT
T ss_pred eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhh
Confidence 2222 235667889999999876 7777664 88999999999975 4777865 899999999999999999999766
Q ss_pred cccCCCCcEEEccCCCCcccCHhHHhhhhCC
Q psy6452 564 FVMLSNLTTFYAQRKYWMFLTISLLCYLMGL 594 (594)
Q Consensus 564 l~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 594 (594)
|.++.+|+.+.|..+ ++.|+..+|.++.+|
T Consensus 306 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 306 FMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 999999999999765 999999999887765
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=1.7e-10 Score=118.59 Aligned_cols=84 Identities=20% Similarity=0.218 Sum_probs=43.6
Q ss_pred CcccEEEccC-CCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCcc
Q psy6452 234 HDIFTVNLSH-QDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLK 310 (594)
Q Consensus 234 ~~L~~L~Ls~-n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~ 310 (594)
++|+.|+|++ |+|+.+++..|.++++|++|+|++|+|++ +++..|..+++|++|+|++|+|+.+|. |..++ |+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~ 106 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF---VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQ 106 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE---ECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CC
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce---eCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ce
Confidence 4455555553 55555555555555555555555555333 344445555555555555555555542 22232 55
Q ss_pred EEeccCCcccc
Q psy6452 311 ELDISHNNFES 321 (594)
Q Consensus 311 ~L~Ls~N~l~~ 321 (594)
+|+|++|.+..
T Consensus 107 ~l~l~~N~~~c 117 (347)
T 2ifg_A 107 ELVLSGNPLHC 117 (347)
T ss_dssp EEECCSSCCCC
T ss_pred EEEeeCCCccC
Confidence 55555555553
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.70 E-value=4.7e-09 Score=97.66 Aligned_cols=117 Identities=15% Similarity=0.044 Sum_probs=80.7
Q ss_pred ccccCCCcceEeCCCC-cCcccccccccccccCcccccCCCCCcEEeCccccCc-----cccccccCCCCCcEEEccCCC
Q psy6452 460 QLKYLKNIKYLNCSND-IDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN-----CIPEDIGNLICLEKLNISHNK 533 (594)
Q Consensus 460 ~~~~l~~L~~L~Ls~n-~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~-----~ip~~~~~l~~L~~L~Ls~N~ 533 (594)
.+...++|+.|++++| .+.... ...+...+...++|++|+|++|.|+ .+...+...++|++|+|++|.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g------~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPT------LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHH------HHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHhcCCCCCEEEecCCCCCCHHH------HHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3444556666666664 332211 1122334455678888888888887 345556677889999999999
Q ss_pred Ccc-----cCccccCCCCCCEEEC--cCCCCCc-----cCcccccCCCCcEEEccCCCCcc
Q psy6452 534 VYK-----LPESFANLKSLKILDV--SYNKLTM-----LPDGFVMLSNLTTFYAQRKYWMF 582 (594)
Q Consensus 534 l~~-----lp~~~~~l~~L~~L~L--s~N~l~~-----ip~~l~~l~~L~~L~L~~N~l~~ 582 (594)
|+. +...+...++|++|+| ++|.|+. +.+.+...+.|++|+|++|.+..
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 883 4556777788999999 7899883 45556777889999999998763
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.62 E-value=2.7e-08 Score=102.42 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=92.5
Q ss_pred cccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccc--cCCCcceEeCCCCcCcccc
Q psy6452 404 QEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK--YLKNIKYLNCSNDIDHRKS 481 (594)
Q Consensus 404 ~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~~~~~~ 481 (594)
..+|+|+.|++++|.. -.++ .+ ..++|+.|++..+.+.......+. .+++|+.|+|+.+......
T Consensus 169 ~~~P~L~~L~L~g~~~--l~l~----------~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~ 235 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNN--LSIG----------KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGF 235 (362)
T ss_dssp HTCTTCCEEEEECCBT--CBCC----------SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTC
T ss_pred hcCCCCcEEEEeCCCC--ceec----------cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccccc
Confidence 4566777777766410 0111 11 145777787777776655444443 6788888887531000000
Q ss_pred cccccccccCcccc--cCCCCCcEEeCccccCcc-ccccc---cCCCCCcEEEccCCCCcc-----cCccccCCCCCCEE
Q psy6452 482 QDFVNVLWELPLSI--LYLSSIQELHLSNVQLNC-IPEDI---GNLICLEKLNISHNKVYK-----LPESFANLKSLKIL 550 (594)
Q Consensus 482 ~~~~n~~~~ip~~~--~~l~~L~~L~Ls~N~l~~-ip~~~---~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L 550 (594)
. ..+..+...+ ..+++|+.|+|++|.++. .+..+ ..+++|++|+|+.|.|+. ++..+..+++|+.|
T Consensus 236 ~---~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L 312 (362)
T 2ra8_A 236 D---GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312 (362)
T ss_dssp C---SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEE
T ss_pred c---hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEE
Confidence 0 0011111112 247899999999998872 22222 357889999999999884 34444567889999
Q ss_pred ECcCCCCCc-cCccccc-CCCCcEEEccCCC
Q psy6452 551 DVSYNKLTM-LPDGFVM-LSNLTTFYAQRKY 579 (594)
Q Consensus 551 ~Ls~N~l~~-ip~~l~~-l~~L~~L~L~~N~ 579 (594)
+|++|.|+. .-..+.. + ...+++++++
T Consensus 313 ~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 313 NMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp ECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 999998883 2122222 2 3568888876
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.47 E-value=8.4e-08 Score=98.76 Aligned_cols=138 Identities=20% Similarity=0.138 Sum_probs=93.2
Q ss_pred cccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccc--cCCCCCcEEeCcc--cc---
Q psy6452 438 GVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSI--LYLSSIQELHLSN--VQ--- 510 (594)
Q Consensus 438 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~--~~l~~L~~L~Ls~--N~--- 510 (594)
..+++|+.|+++++.-... ..+. +++|+.|++..+.+.. .....+ ..+++|+.|+|+. |.
T Consensus 169 ~~~P~L~~L~L~g~~~l~l--~~~~-~~~L~~L~L~~~~l~~----------~~l~~l~~~~lp~L~~L~L~~~~~~~~~ 235 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSI--GKKP-RPNLKSLEIISGGLPD----------SVVEDILGSDLPNLEKLVLYVGVEDYGF 235 (362)
T ss_dssp HTCTTCCEEEEECCBTCBC--CSCB-CTTCSEEEEECSBCCH----------HHHHHHHHSBCTTCCEEEEECBCGGGTC
T ss_pred hcCCCCcEEEEeCCCCcee--cccc-CCCCcEEEEecCCCCh----------HHHHHHHHccCCCCcEEEEecccccccc
Confidence 4568999999988731111 2233 7899999998763221 111122 2578999999863 22
Q ss_pred ---Cccccccc--cCCCCCcEEEccCCCCcc-cCccc---cCCCCCCEEECcCCCCCc-----cCcccccCCCCcEEEcc
Q psy6452 511 ---LNCIPEDI--GNLICLEKLNISHNKVYK-LPESF---ANLKSLKILDVSYNKLTM-----LPDGFVMLSNLTTFYAQ 576 (594)
Q Consensus 511 ---l~~ip~~~--~~l~~L~~L~Ls~N~l~~-lp~~~---~~l~~L~~L~Ls~N~l~~-----ip~~l~~l~~L~~L~L~ 576 (594)
+..+...+ ..+++|++|+|++|.+.. .+..+ ..+++|++|+|++|.|+. ++.++..+++|+.|+|+
T Consensus 236 ~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 236 DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred chhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence 22333333 357999999999999983 22222 357899999999999994 45556778999999999
Q ss_pred CCCCcccCHhHH
Q psy6452 577 RKYWMFLTISLL 588 (594)
Q Consensus 577 ~N~l~~l~~~~~ 588 (594)
+|+|+.-....+
T Consensus 316 ~n~i~d~~~~~l 327 (362)
T 2ra8_A 316 YNYLSDEMKKEL 327 (362)
T ss_dssp SBBCCHHHHHHH
T ss_pred CCcCCHHHHHHH
Confidence 998775444333
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.45 E-value=3.8e-08 Score=91.42 Aligned_cols=113 Identities=11% Similarity=0.149 Sum_probs=79.7
Q ss_pred cCCCcEEEcCCc-cccccCc----cccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCc--
Q psy6452 440 FSNLISLHMQNT-AAVMSNV----SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN-- 512 (594)
Q Consensus 440 ~~~L~~L~l~~n-~l~~~~~----~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~-- 512 (594)
.+.|+.|++++| .+..... ..+...++|++|+|++|.+.... ...+...+...++|++|+|++|.|+
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g------~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV------AFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHH------HHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHH------HHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 446666666666 6654322 33455677888888887443221 1123334555678999999999998
Q ss_pred ---cccccccCCCCCcEEEc--cCCCCcc-----cCccccCCCCCCEEECcCCCCC
Q psy6452 513 ---CIPEDIGNLICLEKLNI--SHNKVYK-----LPESFANLKSLKILDVSYNKLT 558 (594)
Q Consensus 513 ---~ip~~~~~l~~L~~L~L--s~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~ 558 (594)
.+...+...++|++|+| ++|.|+. +...+...++|++|+|++|.|.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 35667888899999999 8899982 4556777789999999999887
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=1.8e-07 Score=91.64 Aligned_cols=87 Identities=24% Similarity=0.336 Sum_probs=63.1
Q ss_pred CcccE--EEccCCCCcccch---HhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCc-
Q psy6452 234 HDIFT--VNLSHQDINFVQE---SMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFK- 307 (594)
Q Consensus 234 ~~L~~--L~Ls~n~l~~l~~---~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~- 307 (594)
+.|+. ++++.|....++. .+..++++|+.|+|++|+|+++..++ ..+..+++|+.|+|++|+|+++.++..+.
T Consensus 141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~-~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~ 219 (267)
T 3rw6_A 141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSERELDKIKG 219 (267)
T ss_dssp HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGT-THHHHSTTCCEEECTTSCCCSGGGGGGGTT
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccch-hHHhhCCCCCEEECCCCccCCchhhhhccc
Confidence 44555 6677776554442 23367889999999999988866554 34468899999999999998776555444
Q ss_pred -CccEEeccCCcccc
Q psy6452 308 -VLKELDISHNNFES 321 (594)
Q Consensus 308 -~L~~L~Ls~N~l~~ 321 (594)
+|++|+|++|.+.+
T Consensus 220 l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 220 LKLEELWLDGNSLCD 234 (267)
T ss_dssp SCCSEEECTTSTTGG
T ss_pred CCcceEEccCCcCcc
Confidence 88888888888874
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=2e-07 Score=91.29 Aligned_cols=77 Identities=23% Similarity=0.194 Sum_probs=47.6
Q ss_pred CCCCCcEEeCccccCcccc---ccccCCCCCcEEEccCCCCcccCc--cccCCCCCCEEECcCCCCC-ccCc-------c
Q psy6452 497 YLSSIQELHLSNVQLNCIP---EDIGNLICLEKLNISHNKVYKLPE--SFANLKSLKILDVSYNKLT-MLPD-------G 563 (594)
Q Consensus 497 ~l~~L~~L~Ls~N~l~~ip---~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~-~ip~-------~ 563 (594)
++++|+.|+|++|+|+.++ ..+..+++|+.|+|++|+|+.+.. .+..+ +|++|+|++|.++ .+|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 4567777777777777543 345567777777777777776522 22333 6777777777776 3431 2
Q ss_pred cccCCCCcEEE
Q psy6452 564 FVMLSNLTTFY 574 (594)
Q Consensus 564 l~~l~~L~~L~ 574 (594)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45667776665
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.84 E-value=9.2e-06 Score=75.31 Aligned_cols=88 Identities=16% Similarity=0.050 Sum_probs=65.0
Q ss_pred cccCCCCCcEEeCccccCc-----cccccccCCCCCcEEEccCCCCc-----ccCccccCCCCCCEEECcCC---CCC--
Q psy6452 494 SILYLSSIQELHLSNVQLN-----CIPEDIGNLICLEKLNISHNKVY-----KLPESFANLKSLKILDVSYN---KLT-- 558 (594)
Q Consensus 494 ~~~~l~~L~~L~Ls~N~l~-----~ip~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N---~l~-- 558 (594)
.+..-+.|+.|+|++|.|+ .|.+.+..-+.|++|+|++|+|+ .|-+++..-+.|++|+|++| .|.
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 4445578888899888888 45556667788999999999988 34556777778999999865 444
Q ss_pred ---ccCcccccCCCCcEEEccCCCCc
Q psy6452 559 ---MLPDGFVMLSNLTTFYAQRKYWM 581 (594)
Q Consensus 559 ---~ip~~l~~l~~L~~L~L~~N~l~ 581 (594)
.|.+.+...+.|++|+++.|.+.
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 24455677788999998877543
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=1.5e-05 Score=72.52 Aligned_cols=86 Identities=13% Similarity=0.121 Sum_probs=65.0
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCC-CCCccccchhhhhcC----CCCCEEEcCCC-CCC--CCCCcC
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNN-HQDINFVQESMSQKL----TNLIVLDLSHN-KLS--ELPDFL 304 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~i~~l~~~~~~~l----~~L~~L~Ls~N-~l~--~lp~~~ 304 (594)
-..|++||++++.|+...-..+.++++|++|+|++|. |++- .-..+..+ ++|++|+|++| +|+ ++..+.
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~---gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG---CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH---HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH---HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 3479999999999987766667899999999999985 5541 11222333 47999999998 487 455677
Q ss_pred CCcCccEEeccCCc-ccc
Q psy6452 305 NFKVLKELDISHNN-FES 321 (594)
Q Consensus 305 ~l~~L~~L~Ls~N~-l~~ 321 (594)
.+++|++|+++++. ++.
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 88999999999985 554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.66 E-value=4.9e-05 Score=70.41 Aligned_cols=90 Identities=21% Similarity=0.262 Sum_probs=72.4
Q ss_pred cCCCCCcEEeCccc-cCc-----cccccccCCCCCcEEEccCCCCc-----ccCccccCCCCCCEEECcCCCCC-----c
Q psy6452 496 LYLSSIQELHLSNV-QLN-----CIPEDIGNLICLEKLNISHNKVY-----KLPESFANLKSLKILDVSYNKLT-----M 559 (594)
Q Consensus 496 ~~l~~L~~L~Ls~N-~l~-----~ip~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~-----~ 559 (594)
.+-+.|++|+|++| .|. .+-+.+..-+.|+.|+|++|+|. .|.+.+...+.|++|+|++|+|+ .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34578999999986 887 45666788899999999999999 45556777789999999999999 3
Q ss_pred cCcccccCCCCcEEEccCCCCcccCH
Q psy6452 560 LPDGFVMLSNLTTFYAQRKYWMFLTI 585 (594)
Q Consensus 560 ip~~l~~l~~L~~L~L~~N~l~~l~~ 585 (594)
|.+.+...+.|++|+|++|....+..
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~ 143 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGN 143 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCH
Confidence 56667888899999999765434443
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.64 E-value=7.4e-05 Score=64.63 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=45.3
Q ss_pred cEEeCccccCc--cccccccCCCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCC
Q psy6452 502 QELHLSNVQLN--CIPEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLT 558 (594)
Q Consensus 502 ~~L~Ls~N~l~--~ip~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~ 558 (594)
..++.+++.++ .+|..+. .+|++|+|++|+|+.||. .|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888888 8887654 468889999999998866 6788888999999998887
No 163
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.51 E-value=5.3e-05 Score=68.85 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=51.8
Q ss_pred CCCcEEeCccccCcccc-ccccCCCCCcEEEccCCC-Cc--ccCccccCC----CCCCEEECcCC-CCCc--cCcccccC
Q psy6452 499 SSIQELHLSNVQLNCIP-EDIGNLICLEKLNISHNK-VY--KLPESFANL----KSLKILDVSYN-KLTM--LPDGFVML 567 (594)
Q Consensus 499 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l----~~L~~L~Ls~N-~l~~--ip~~l~~l 567 (594)
..|++||++++.|+..- ..+..+++|++|+|++|. |+ .+ ..+..+ ++|++|+|++| +||. + ..+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcC
Confidence 36777777777776321 235677788888888774 65 22 223333 36788888776 4772 3 335667
Q ss_pred CCCcEEEccCCC-Ccc
Q psy6452 568 SNLTTFYAQRKY-WMF 582 (594)
Q Consensus 568 ~~L~~L~L~~N~-l~~ 582 (594)
++|++|+|++.+ ++.
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 788888887765 443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.50 E-value=0.00017 Score=62.35 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=49.2
Q ss_pred cEEeccCCccc--cCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCC
Q psy6452 310 KELDISHNNFE--SMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIK 373 (594)
Q Consensus 310 ~~L~Ls~N~l~--~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 373 (594)
..++.+++.++ .+|. .+|.+++.|+|++|+|+.++..+|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~--------~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPT--------AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCS--------CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCC--------CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47889999988 8885 35578999999999999999999999999999999999875
No 165
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=94.58 E-value=0.01 Score=47.29 Aligned_cols=31 Identities=39% Similarity=0.765 Sum_probs=27.2
Q ss_pred ccccccCCCCeeeeceeeeeeeccccccccc
Q psy6452 92 IHTCEKCEKPIMIYGRMICTIMKFGKEITTV 122 (594)
Q Consensus 92 ~~~C~~C~~~~~~~g~~i~~~~~~~~~~~~~ 122 (594)
+++|++|+.|+.++||++||.+++..+-...
T Consensus 1 ~hfC~~C~~Pi~iygRmIPCkHvFCydCa~~ 31 (101)
T 3vk6_A 1 VHFCDKCGLPIKVYGRMIPCKHVFCYDCAIL 31 (101)
T ss_dssp CCBCTTTCSBCSEEEEEETTCCEEEHHHHHH
T ss_pred CeecCccCCCeEEEeeeccccccHHHHHHHH
Confidence 4799999999999999999999998776533
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=74.38 E-value=1.8 Score=34.73 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=29.5
Q ss_pred CCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCC
Q psy6452 244 QDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN 295 (594)
Q Consensus 244 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N 295 (594)
..++.|...+|.++.+|+.+.+-.+ +..|...+|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~----v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN----IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT----SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc----hheEcHHHHhccCCccEEEEcCC
Confidence 3556666666666666766666654 23355566666666666666554
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.76 E-value=13 Score=29.55 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=38.1
Q ss_pred ccccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCC
Q psy6452 225 ELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNN 269 (594)
Q Consensus 225 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~ 269 (594)
.-..+|.++.+|+++.+-. .++.|...+|.++.+|+.+.+....
T Consensus 11 I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp SCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred ecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCCC
Confidence 3356788999999999986 5899999999999999999998754
Done!